Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69477.t1 | XP_003628625.1 | 97.4 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 2.20E-34 | 156 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69477.t1 | P58728 | 88.3 | 77 | 9 | 0 | 1 | 77 | 1 | 77 | 2.5e-34 | 147.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69477.t1 | G7IW51 | 97.4 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 1.6e-34 | 156.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene69477 | 0.808271 | 3.36E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene69477 | 0.855454 | 6.24E-62 | -1.69E-46 |
| MS.gene049341 | MS.gene69477 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene049382 | MS.gene69477 | 0.81134 | 7.35E-51 | -1.69E-46 |
| MS.gene049653 | MS.gene69477 | 0.815981 | 6.99E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene69477 | 0.822761 | 1.99E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene69477 | 0.849561 | 2.99E-60 | -1.69E-46 |
| MS.gene050689 | MS.gene69477 | 0.814146 | 1.79E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene69477 | 0.834727 | 2.54E-56 | -1.69E-46 |
| MS.gene050815 | MS.gene69477 | 0.805096 | 1.57E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene69477 | 0.814407 | 1.56E-51 | -1.69E-46 |
| MS.gene051241 | MS.gene69477 | 0.806698 | 7.25E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene69477 | 0.839027 | 2.03E-57 | -1.69E-46 |
| MS.gene051245 | MS.gene69477 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene69477 | 0.805668 | 1.19E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene69477 | 0.842598 | 2.34E-58 | -1.69E-46 |
| MS.gene052286 | MS.gene69477 | 0.846382 | 2.25E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene69477 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene052376 | MS.gene69477 | 0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene69477 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene69477 | 0.801612 | 8.30E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene69477 | 0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene054658 | MS.gene69477 | 0.809078 | 2.26E-50 | -1.69E-46 |
| MS.gene055441 | MS.gene69477 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene69477 | 0.827984 | 1.16E-54 | -1.69E-46 |
| MS.gene055623 | MS.gene69477 | 0.825112 | 5.60E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene69477 | 0.82043 | 6.89E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene69477 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene057140 | MS.gene69477 | 0.835575 | 1.55E-56 | -1.69E-46 |
| MS.gene057234 | MS.gene69477 | 0.832013 | 1.20E-55 | -1.69E-46 |
| MS.gene057392 | MS.gene69477 | 0.825348 | 4.92E-54 | -1.69E-46 |
| MS.gene057693 | MS.gene69477 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene69477 | 0.823652 | 1.23E-53 | -1.69E-46 |
| MS.gene05795 | MS.gene69477 | 0.817148 | 3.83E-52 | -1.69E-46 |
| MS.gene058054 | MS.gene69477 | 0.813814 | 2.12E-51 | -1.69E-46 |
| MS.gene058055 | MS.gene69477 | 0.845338 | 4.32E-59 | -1.69E-46 |
| MS.gene058595 | MS.gene69477 | 0.805998 | 1.02E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene69477 | 0.827697 | 1.36E-54 | -1.69E-46 |
| MS.gene059317 | MS.gene69477 | 0.84912 | 3.96E-60 | -1.69E-46 |
| MS.gene059569 | MS.gene69477 | 0.814203 | 1.74E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene69477 | 0.821728 | 3.46E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene69477 | 0.814951 | 1.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69477.t1 | MTR_3g019310 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 3.33e-50 | 159 |
| MS.gene69477.t1 | MTR_3g019300 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 3.33e-50 | 159 |
| MS.gene69477.t1 | MTR_8g062750 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 4.83e-50 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69477.t1 | AT4G14342 | 88.312 | 77 | 9 | 0 | 1 | 77 | 1 | 77 | 2.25e-46 | 149 |
| MS.gene69477.t1 | AT4G14342 | 87.013 | 77 | 10 | 0 | 1 | 77 | 1 | 77 | 6.18e-46 | 149 |
| MS.gene69477.t1 | AT3G23325 | 87.013 | 77 | 10 | 0 | 1 | 77 | 1 | 77 | 1.20e-45 | 147 |
Find 47 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACTTTGGTTTGTTATT+TGG | 0.113693 | 8.1:+40984607 | MS.gene69477:CDS |
| CTAAGAATGCTCCTGGAAAT+AGG | 0.305183 | 8.1:+40985415 | MS.gene69477:CDS |
| CTTAAACATGTTCATGGTAG+TGG | 0.305336 | 8.1:-40985544 | None:intergenic |
| ATCCTTCTTAAACATGTTCA+TGG | 0.333864 | 8.1:-40985550 | None:intergenic |
| CTATTTCCAGGAGCATTCTT+AGG | 0.337930 | 8.1:-40985414 | None:intergenic |
| CATTGAACATGATGTTATAA+AGG | 0.351672 | 8.1:+40985638 | MS.gene69477:CDS |
| TTTGGTTTGTTATTTGGAAA+TGG | 0.364058 | 8.1:+40984613 | MS.gene69477:CDS |
| ACACAATCACTCCTATTTCC+AGG | 0.369049 | 8.1:-40985426 | None:intergenic |
| CTTTATAACATCATGTTCAA+TGG | 0.388456 | 8.1:-40985637 | None:intergenic |
| TTGCGTTGCAGGCGAGTGAT+AGG | 0.389437 | 8.1:+40983708 | MS.gene69477:intron |
| TGCAATTTGTTGCCGCAAAT+AGG | 0.398954 | 8.1:+40984563 | MS.gene69477:CDS |
| ACATCATGTTCAATGGGATT+AGG | 0.403952 | 8.1:-40985630 | None:intergenic |
| TCTAGAAAAGATTGACGATT+AGG | 0.414211 | 8.1:+40985686 | MS.gene69477:CDS |
| TAGAAAAGTAAGAAAGTAAA+GGG | 0.419141 | 8.1:-40983859 | None:intergenic |
| GAGTATTAGTACTCAAACTT+TGG | 0.420355 | 8.1:+40984595 | MS.gene69477:CDS |
| ATCGCTCAAAACGAATCTAT+TGG | 0.432806 | 8.1:+40983881 | MS.gene69477:CDS |
| TCTAACCTGCGAGCAGAAAA+CGG | 0.434191 | 8.1:-40984996 | None:intergenic |
| CTCTCCTTGTCACCTATTTG+CGG | 0.435540 | 8.1:-40984575 | None:intergenic |
| TTTATAACATCATGTTCAAT+GGG | 0.440066 | 8.1:-40985636 | None:intergenic |
| ATAGAAAAGTAAGAAAGTAA+AGG | 0.454525 | 8.1:-40983860 | None:intergenic |
| CAAGCTAAATACGTTGGAAC+TGG | 0.455380 | 8.1:+40983761 | MS.gene69477:CDS |
| ATGTCTCGTCTAATAATGAA+TGG | 0.462306 | 8.1:+40985586 | MS.gene69477:CDS |
| CTGATATCAACAGATTTGAA+TGG | 0.473717 | 8.1:+40983789 | MS.gene69477:CDS |
| AGCTTGAAGATGCTCAAGTT+GGG | 0.482407 | 8.1:-40983744 | None:intergenic |
| CTAACCTGCGAGCAGAAAAC+GGG | 0.500124 | 8.1:-40984995 | None:intergenic |
| AGTAAGAAAGTAAAGGGTAA+TGG | 0.502423 | 8.1:-40983853 | None:intergenic |
| TAGCTTGAAGATGCTCAAGT+TGG | 0.503852 | 8.1:-40983745 | None:intergenic |
| AAGGGAAAGCGGTGAAGTGG+AGG | 0.509855 | 8.1:+40985464 | MS.gene69477:CDS |
| ACAAAGCCTAAGAATGCTCC+TGG | 0.510487 | 8.1:+40985408 | MS.gene69477:CDS |
| TTGTTTCTATAGCGAAGGAC+AGG | 0.513579 | 8.1:-40985389 | None:intergenic |
| TTAAACATGTTCATGGTAGT+GGG | 0.514094 | 8.1:-40985543 | None:intergenic |
| GTCTAATAATGAATGGGTTG+TGG | 0.525184 | 8.1:+40985593 | MS.gene69477:CDS |
| AGAACGATGAAGAACTTTCA+AGG | 0.532477 | 8.1:-40984749 | None:intergenic |
| TACCATGAACATGTTTAAGA+AGG | 0.533995 | 8.1:+40985548 | MS.gene69477:CDS |
| TCTCAGATTGCTACTAGTGA+GGG | 0.545698 | 8.1:+40985347 | MS.gene69477:intron |
| GATAGCTATGCTTCATACAT+TGG | 0.549071 | 8.1:+40983830 | MS.gene69477:CDS |
| TGATATCAACAGATTTGAAT+GGG | 0.559675 | 8.1:+40983790 | MS.gene69477:CDS |
| AGGCTTTGTTTCTATAGCGA+AGG | 0.562793 | 8.1:-40985394 | None:intergenic |
| CATCTTCAAGCTAAATACGT+TGG | 0.583881 | 8.1:+40983755 | MS.gene69477:CDS |
| TTCTCAGATTGCTACTAGTG+AGG | 0.597874 | 8.1:+40985346 | MS.gene69477:intron |
| ACATGATGTTATAAAGGATG+AGG | 0.598600 | 8.1:+40985644 | MS.gene69477:CDS |
| AGGGAAAGCGGTGAAGTGGA+GGG | 0.601469 | 8.1:+40985465 | MS.gene69477:CDS |
| CATGATGTTATAAAGGATGA+GGG | 0.610571 | 8.1:+40985645 | MS.gene69477:CDS |
| TGTCTCGTCTAATAATGAAT+GGG | 0.616497 | 8.1:+40985587 | MS.gene69477:CDS |
| TAATAATGAATGGGTTGTGG+CGG | 0.624094 | 8.1:+40985596 | MS.gene69477:CDS |
| GTTGCCGCAAATAGGTGACA+AGG | 0.651430 | 8.1:+40984571 | MS.gene69477:CDS |
| GATGTTATAAAGGATGAGGG+TGG | 0.702090 | 8.1:+40985648 | MS.gene69477:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATCCTATTTTTAAAA+TGG | - | chr8.1:40985059-40985078 | None:intergenic | 10.0% |
| !!! | AATAATCCTATTTTTAAAAT+GGG | - | chr8.1:40985058-40985077 | None:intergenic | 10.0% |
| !!! | ATTTTAAAAATAGGATTATT+TGG | + | chr8.1:40985058-40985077 | MS.gene69477:intron | 10.0% |
| !!! | GATTTAATTATTTTAAAAAC+AGG | + | chr8.1:40985109-40985128 | MS.gene69477:intron | 10.0% |
| !!! | GTATTTTATTAGAAATAAAT+AGG | - | chr8.1:40984798-40984817 | None:intergenic | 10.0% |
| !!! | AAACAAAATTACTTGTTAAT+TGG | + | chr8.1:40983978-40983997 | MS.gene69477:intron | 15.0% |
| !!! | AATATTTTTAAGAGAAGATT+TGG | + | chr8.1:40985513-40985532 | MS.gene69477:CDS | 15.0% |
| !!! | TCTTCTCTTAAAAATATTTT+TGG | - | chr8.1:40985511-40985530 | None:intergenic | 15.0% |
| !!! | TGTTTTTTATACTGTTAAAT+TGG | + | chr8.1:40984023-40984042 | MS.gene69477:intron | 15.0% |
| !! | ATAGAAAAGTAAGAAAGTAA+AGG | - | chr8.1:40983863-40983882 | None:intergenic | 20.0% |
| !! | TAGAAAAGTAAGAAAGTAAA+GGG | - | chr8.1:40983862-40983881 | None:intergenic | 20.0% |
| !! | TTTATAACATCATGTTCAAT+GGG | - | chr8.1:40985639-40985658 | None:intergenic | 20.0% |
| !! | TTTATACTGTTAAATTGGAA+GGG | + | chr8.1:40984028-40984047 | MS.gene69477:intron | 20.0% |
| !!! | AGAAAACCCATTTTAAAAAT+AGG | + | chr8.1:40985049-40985068 | MS.gene69477:intron | 20.0% |
| !!! | ATGTATATTTGAGTTTAAGA+TGG | + | chr8.1:40984866-40984885 | MS.gene69477:intron | 20.0% |
| !!! | ATTTTTTGAAGATATGAATC+TGG | - | chr8.1:40984820-40984839 | None:intergenic | 20.0% |
| !!! | TGTATATTTGAGTTTAAGAT+GGG | + | chr8.1:40984867-40984886 | MS.gene69477:intron | 20.0% |
| !!! | TTCCTATGATTTTTAAATCA+CGG | - | chr8.1:40984661-40984680 | None:intergenic | 20.0% |
| !!! | TTTTATACTGTTAAATTGGA+AGG | + | chr8.1:40984027-40984046 | MS.gene69477:intron | 20.0% |
| ! | AACCGTGATTTAAAAATCAT+AGG | + | chr8.1:40984656-40984675 | MS.gene69477:intron | 25.0% |
| ! | AATAGAATAATGATGTTGAG+TGG | + | chr8.1:40984187-40984206 | MS.gene69477:intron | 25.0% |
| ! | CATTGAACATGATGTTATAA+AGG | + | chr8.1:40985638-40985657 | MS.gene69477:CDS | 25.0% |
| ! | CTCAAAGTGAAATATCTAAA+AGG | - | chr8.1:40984165-40984184 | None:intergenic | 25.0% |
| ! | CTTTATAACATCATGTTCAA+TGG | - | chr8.1:40985640-40985659 | None:intergenic | 25.0% |
| ! | TGATATCAACAGATTTGAAT+GGG | + | chr8.1:40983790-40983809 | MS.gene69477:CDS | 25.0% |
| ! | TGTAGAACTTACTGAAAAAA+GGG | + | chr8.1:40985446-40985465 | MS.gene69477:CDS | 25.0% |
| ! | TTAACGAAATCATGAAACTA+CGG | + | chr8.1:40983673-40983692 | MS.gene69477:intron | 25.0% |
| !! | CTTTTAGATATTTCACTTTG+AGG | + | chr8.1:40984163-40984182 | MS.gene69477:intron | 25.0% |
| !!! | ATTCCATGTTTTTTGTTTTG+AGG | + | chr8.1:40983940-40983959 | MS.gene69477:intron | 25.0% |
| !!! | TCAAACTTTGGTTTGTTATT+TGG | + | chr8.1:40984607-40984626 | MS.gene69477:CDS | 25.0% |
| !!! | TTTGGTTTGTTATTTGGAAA+TGG | + | chr8.1:40984613-40984632 | MS.gene69477:CDS | 25.0% |
| AAACATATCTATGAATACGC+AGG | + | chr8.1:40984279-40984298 | MS.gene69477:intron | 30.0% | |
| AAAGTAGCACTAGACAAAAA+TGG | - | chr8.1:40985203-40985222 | None:intergenic | 30.0% | |
| AAATCATAGGAAACGATTAG+AGG | + | chr8.1:40984669-40984688 | MS.gene69477:intron | 30.0% | |
| AAGCGATTTAAGAGAGAATT+GGG | + | chr8.1:40984701-40984720 | MS.gene69477:intron | 30.0% | |
| AATAAGGATGAAACAGATGA+GGG | - | chr8.1:40985264-40985283 | None:intergenic | 30.0% | |
| AATCATAGGAAACGATTAGA+GGG | + | chr8.1:40984670-40984689 | MS.gene69477:intron | 30.0% | |
| ACACCTCAAAACAAAAAACA+TGG | - | chr8.1:40983946-40983965 | None:intergenic | 30.0% | |
| ACATGATGTTATAAAGGATG+AGG | + | chr8.1:40985644-40985663 | MS.gene69477:CDS | 30.0% | |
| AGTAAGAAAGTAAAGGGTAA+TGG | - | chr8.1:40983856-40983875 | None:intergenic | 30.0% | |
| ATCCTTCTTAAACATGTTCA+TGG | - | chr8.1:40985553-40985572 | None:intergenic | 30.0% | |
| ATGTCTCGTCTAATAATGAA+TGG | + | chr8.1:40985586-40985605 | MS.gene69477:CDS | 30.0% | |
| CATGATGTTATAAAGGATGA+GGG | + | chr8.1:40985645-40985664 | MS.gene69477:CDS | 30.0% | |
| CTATATAGTAGGTTAACAAC+AGG | - | chr8.1:40984096-40984115 | None:intergenic | 30.0% | |
| CTCAAATATACATCTTTCTG+AGG | - | chr8.1:40984859-40984878 | None:intergenic | 30.0% | |
| CTGATATCAACAGATTTGAA+TGG | + | chr8.1:40983789-40983808 | MS.gene69477:CDS | 30.0% | |
| GAGTATTAGTACTCAAACTT+TGG | + | chr8.1:40984595-40984614 | MS.gene69477:CDS | 30.0% | |
| GTGTAGAACTTACTGAAAAA+AGG | + | chr8.1:40985445-40985464 | MS.gene69477:CDS | 30.0% | |
| TACCATGAACATGTTTAAGA+AGG | + | chr8.1:40985548-40985567 | MS.gene69477:CDS | 30.0% | |
| TGTCTCGTCTAATAATGAAT+GGG | + | chr8.1:40985587-40985606 | MS.gene69477:CDS | 30.0% | |
| TTAAACATGTTCATGGTAGT+GGG | - | chr8.1:40985546-40985565 | None:intergenic | 30.0% | |
| TTGTTAACCTACTATATAGC+CGG | + | chr8.1:40984097-40984116 | MS.gene69477:intron | 30.0% | |
| ! | TAATCGTCAATCTTTTCTAG+AGG | - | chr8.1:40985687-40985706 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTAAATTGACCG+GGG | - | chr8.1:40984073-40984092 | None:intergenic | 30.0% |
| !! | GATTTGTTTCTAAATTGACC+GGG | - | chr8.1:40984074-40984093 | None:intergenic | 30.0% |
| !! | GGATTTGTTTCTAAATTGAC+CGG | - | chr8.1:40984075-40984094 | None:intergenic | 30.0% |
| ACATCATGTTCAATGGGATT+AGG | - | chr8.1:40985633-40985652 | None:intergenic | 35.0% | |
| AGAACGATGAAGAACTTTCA+AGG | - | chr8.1:40984752-40984771 | None:intergenic | 35.0% | |
| AGCGATTTAAGAGAGAATTG+GGG | + | chr8.1:40984702-40984721 | MS.gene69477:intron | 35.0% | |
| ATCGCTCAAAACGAATCTAT+TGG | + | chr8.1:40983881-40983900 | MS.gene69477:CDS | 35.0% | |
| CAAGCGATTTAAGAGAGAAT+TGG | + | chr8.1:40984700-40984719 | MS.gene69477:intron | 35.0% | |
| CAATGAAAACAGAGAAGAAC+AGG | - | chr8.1:40985307-40985326 | None:intergenic | 35.0% | |
| CATCTTCAAGCTAAATACGT+TGG | + | chr8.1:40983755-40983774 | MS.gene69477:CDS | 35.0% | |
| CCAAGTTACTTATCTCACTA+AGG | - | chr8.1:40984329-40984348 | None:intergenic | 35.0% | |
| CCTTAGTGAGATAAGTAACT+TGG | + | chr8.1:40984326-40984345 | MS.gene69477:intron | 35.0% | |
| CTTAAACATGTTCATGGTAG+TGG | - | chr8.1:40985547-40985566 | None:intergenic | 35.0% | |
| CTTACTGAAAAAAGGGAAAG+CGG | + | chr8.1:40985453-40985472 | MS.gene69477:CDS | 35.0% | |
| GAATAAGGATGAAACAGATG+AGG | - | chr8.1:40985265-40985284 | None:intergenic | 35.0% | |
| GATAGCTATGCTTCATACAT+TGG | + | chr8.1:40983830-40983849 | MS.gene69477:CDS | 35.0% | |
| GTGAGATAAGTAACTTGGTT+AGG | + | chr8.1:40984331-40984350 | MS.gene69477:intron | 35.0% | |
| TAATTGACCGGCTATATAGT+AGG | - | chr8.1:40984107-40984126 | None:intergenic | 35.0% | |
| TACTGTTAAATTGGAAGGGT+TGG | + | chr8.1:40984032-40984051 | MS.gene69477:intron | 35.0% | |
| TCTGAGAAGTAGAAGCAATT+TGG | - | chr8.1:40985334-40985353 | None:intergenic | 35.0% | |
| ! | ACAGCGTTATACTTTTATGC+AGG | + | chr8.1:40983907-40983926 | MS.gene69477:CDS | 35.0% |
| !! | GTCTAATAATGAATGGGTTG+TGG | + | chr8.1:40985593-40985612 | MS.gene69477:CDS | 35.0% |
| !! | TAATAATGAATGGGTTGTGG+CGG | + | chr8.1:40985596-40985615 | MS.gene69477:CDS | 35.0% |
| AAGATGGGAATCTCTTTCTG+AGG | - | chr8.1:40984916-40984935 | None:intergenic | 40.0% | |
| ACAAGAAAATGCACTGCAAC+AGG | - | chr8.1:40984541-40984560 | None:intergenic | 40.0% | |
| ACACAATCACTCCTATTTCC+AGG | - | chr8.1:40985429-40985448 | None:intergenic | 40.0% | |
| AGAAGACATGTTTCTCCATG+CGG | + | chr8.1:40985019-40985038 | MS.gene69477:intron | 40.0% | |
| AGCTTGAAGATGCTCAAGTT+GGG | - | chr8.1:40983747-40983766 | None:intergenic | 40.0% | |
| ATGGACAAGAAAGGATGGAA+AGG | - | chr8.1:40985227-40985246 | None:intergenic | 40.0% | |
| CAAGCTAAATACGTTGGAAC+TGG | + | chr8.1:40983761-40983780 | MS.gene69477:CDS | 40.0% | |
| CTAAGAATGCTCCTGGAAAT+AGG | + | chr8.1:40985415-40985434 | MS.gene69477:CDS | 40.0% | |
| CTAGTACACCACTAATTGAC+CGG | - | chr8.1:40984119-40984138 | None:intergenic | 40.0% | |
| CTATATAGCCGGTCAATTAG+TGG | + | chr8.1:40984108-40984127 | MS.gene69477:intron | 40.0% | |
| GATGTTATAAAGGATGAGGG+TGG | + | chr8.1:40985648-40985667 | MS.gene69477:CDS | 40.0% | |
| GGGATATGACTCGATTACAA+AGG | - | chr8.1:40984777-40984796 | None:intergenic | 40.0% | |
| GTGGATAGTATTCTCTCTCA+TGG | + | chr8.1:40984206-40984225 | MS.gene69477:intron | 40.0% | |
| TAGCTTGAAGATGCTCAAGT+TGG | - | chr8.1:40983748-40983767 | None:intergenic | 40.0% | |
| TCTCAGATTGCTACTAGTGA+GGG | + | chr8.1:40985347-40985366 | MS.gene69477:intron | 40.0% | |
| TGAAACAGATGAGGGAAAAC+TGG | - | chr8.1:40985256-40985275 | None:intergenic | 40.0% | |
| TGTTGTCAGTAGTACTGCTA+TGG | + | chr8.1:40984463-40984482 | MS.gene69477:intron | 40.0% | |
| TTCTCAGATTGCTACTAGTG+AGG | + | chr8.1:40985346-40985365 | MS.gene69477:intron | 40.0% | |
| ! | AAGAGAGAATTGGGGCTTTT+AGG | + | chr8.1:40984710-40984729 | MS.gene69477:intron | 40.0% |
| ! | GAGTTTAAGATGGGAACAGT+GGG | + | chr8.1:40984876-40984895 | MS.gene69477:intron | 40.0% |
| ! | TGAGTTTAAGATGGGAACAG+TGG | + | chr8.1:40984875-40984894 | MS.gene69477:intron | 40.0% |
| !! | AGGCTTTGTTTCTATAGCGA+AGG | - | chr8.1:40985397-40985416 | None:intergenic | 40.0% |
| !! | CTATTTCCAGGAGCATTCTT+AGG | - | chr8.1:40985417-40985436 | None:intergenic | 40.0% |
| !! | TCGTCAATCTTTTCTAGAGG+TGG | - | chr8.1:40985684-40985703 | None:intergenic | 40.0% |
| !! | TGCAATTTGTTGCCGCAAAT+AGG | + | chr8.1:40984563-40984582 | MS.gene69477:CDS | 40.0% |
| !! | TTGTTTCTATAGCGAAGGAC+AGG | - | chr8.1:40985392-40985411 | None:intergenic | 40.0% |
| !!! | AGAATTGGGGCTTTTAGGTT+AGG | + | chr8.1:40984715-40984734 | MS.gene69477:intron | 40.0% |
| AAAAAGGGAAAGCGGTGAAG+TGG | + | chr8.1:40985461-40985480 | MS.gene69477:CDS | 45.0% | |
| AATGGTACGCTTAGCTAGAG+AGG | + | chr8.1:40984631-40984650 | MS.gene69477:intron | 45.0% | |
| ACAAAGCCTAAGAATGCTCC+TGG | + | chr8.1:40985408-40985427 | MS.gene69477:CDS | 45.0% | |
| AGACAAAAATGGTCGCAGCA+GGG | - | chr8.1:40985192-40985211 | None:intergenic | 45.0% | |
| AGCAGTACTACTGACAACAC+AGG | - | chr8.1:40984462-40984481 | None:intergenic | 45.0% | |
| ATAGATTCCCACACACGTTG+TGG | + | chr8.1:40984400-40984419 | MS.gene69477:intron | 45.0% | |
| ATCTTCTGATTTCTGCACGC+GGG | + | chr8.1:40984931-40984950 | MS.gene69477:intron | 45.0% | |
| ATTCGTCGTGAGGGAGAATA+AGG | - | chr8.1:40985280-40985299 | None:intergenic | 45.0% | |
| CAGAGATGGACAAGAAAGGA+TGG | - | chr8.1:40985232-40985251 | None:intergenic | 45.0% | |
| CATCTTCTGATTTCTGCACG+CGG | + | chr8.1:40984930-40984949 | MS.gene69477:intron | 45.0% | |
| CTCTCCTTGTCACCTATTTG+CGG | - | chr8.1:40984578-40984597 | None:intergenic | 45.0% | |
| GAAGACATGTTTCTCCATGC+GGG | + | chr8.1:40985020-40985039 | MS.gene69477:intron | 45.0% | |
| GCGTGCAGAAATCAGAAGAT+GGG | - | chr8.1:40984931-40984950 | None:intergenic | 45.0% | |
| TAGACAAAAATGGTCGCAGC+AGG | - | chr8.1:40985193-40985212 | None:intergenic | 45.0% | |
| TCTAACCTGCGAGCAGAAAA+CGG | - | chr8.1:40984999-40985018 | None:intergenic | 45.0% | |
| TGGACAGAGATGGACAAGAA+AGG | - | chr8.1:40985236-40985255 | None:intergenic | 45.0% | |
| ! | AATACCCATTTTCTGCTCGC+AGG | + | chr8.1:40984961-40984980 | MS.gene69477:intron | 45.0% |
| ! | GGTTTTCTTTATGACCCGCA+TGG | - | chr8.1:40985037-40985056 | None:intergenic | 45.0% |
| !! | ACAAAATTATTAATAATTAA+AGG | - | chr8.1:40985139-40985158 | None:intergenic | 5.0% |
| !!! | ATTTAATTATTTTAAAAACA+GGG | + | chr8.1:40985110-40985129 | MS.gene69477:intron | 5.0% |
| !!! | TATTTTATTAGAAATAAATA+GGG | - | chr8.1:40984797-40984816 | None:intergenic | 5.0% |
| AACAGGACGAATTCGTCGTG+AGG | - | chr8.1:40985290-40985309 | None:intergenic | 50.0% | |
| AAGATGGGAACAGTGGGTCA+TGG | + | chr8.1:40984882-40984901 | MS.gene69477:intron | 50.0% | |
| ACAGGACGAATTCGTCGTGA+GGG | - | chr8.1:40985289-40985308 | None:intergenic | 50.0% | |
| ATTCCCACACACGTTGTGGT+AGG | + | chr8.1:40984404-40984423 | MS.gene69477:intron | 50.0% | |
| CAACCTACCACAACGTGTGT+GGG | - | chr8.1:40984410-40984429 | None:intergenic | 50.0% | |
| CGCGTGCAGAAATCAGAAGA+TGG | - | chr8.1:40984932-40984951 | None:intergenic | 50.0% | |
| CTAACCTGCGAGCAGAAAAC+GGG | - | chr8.1:40984998-40985017 | None:intergenic | 50.0% | |
| CTGACCTGCGAGCAGAAAAT+GGG | - | chr8.1:40984968-40984987 | None:intergenic | 50.0% | |
| GACAAAAATGGTCGCAGCAG+GGG | - | chr8.1:40985191-40985210 | None:intergenic | 50.0% | |
| GAGGGAAAACTGGACAGAGA+TGG | - | chr8.1:40985246-40985265 | None:intergenic | 50.0% | |
| GGCAGGCAATAGCGAAATAG+CGG | + | chr8.1:40984484-40984503 | MS.gene69477:intron | 50.0% | |
| GTCAGTAGTACTGCTATGGC+AGG | + | chr8.1:40984467-40984486 | MS.gene69477:intron | 50.0% | |
| GTTGCCGCAAATAGGTGACA+AGG | + | chr8.1:40984571-40984590 | MS.gene69477:CDS | 50.0% | |
| TCAACCTACCACAACGTGTG+TGG | - | chr8.1:40984411-40984430 | None:intergenic | 50.0% | |
| TCTGACCTGCGAGCAGAAAA+TGG | - | chr8.1:40984969-40984988 | None:intergenic | 50.0% | |
| ! | AATACCCGTTTTCTGCTCGC+AGG | + | chr8.1:40984991-40985010 | MS.gene69477:CDS | 50.0% |
| AAGGGAAAGCGGTGAAGTGG+AGG | + | chr8.1:40985464-40985483 | MS.gene69477:CDS | 55.0% | |
| AGGGAAAGCGGTGAAGTGGA+GGG | + | chr8.1:40985465-40985484 | MS.gene69477:CDS | 55.0% | |
| CGAAATAGCGGCGAGGACTA+GGG | + | chr8.1:40984496-40984515 | MS.gene69477:intron | 55.0% | |
| GAAATAGCGGCGAGGACTAG+GGG | + | chr8.1:40984497-40984516 | MS.gene69477:intron | 55.0% | |
| GCAATAGCGAAATAGCGGCG+AGG | + | chr8.1:40984489-40984508 | MS.gene69477:intron | 55.0% | |
| GTCGCAGCAGGGGATAAAGA+GGG | - | chr8.1:40985181-40985200 | None:intergenic | 55.0% | |
| TTGCGTTGCAGGCGAGTGAT+AGG | + | chr8.1:40983708-40983727 | MS.gene69477:intron | 55.0% | |
| GCGAAATAGCGGCGAGGACT+AGG | + | chr8.1:40984495-40984514 | MS.gene69477:intron | 60.0% | |
| GGACCATCAGTGTGCAACCC+CGG | + | chr8.1:40984053-40984072 | MS.gene69477:intron | 60.0% | |
| GGTCGCAGCAGGGGATAAAG+AGG | - | chr8.1:40985182-40985201 | None:intergenic | 60.0% | |
| GTTGCGTTGCGTTGCGTTGC+AGG | + | chr8.1:40983697-40983716 | MS.gene69477:intron | 60.0% | |
| TGACCGGGGTTGCACACTGA+TGG | - | chr8.1:40984059-40984078 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 40983618 | 40985707 | 40983618 | ID=MS.gene69477 |
| chr8.1 | mRNA | 40983618 | 40985707 | 40983618 | ID=MS.gene69477.t1;Parent=MS.gene69477 |
| chr8.1 | exon | 40983618 | 40983623 | 40983618 | ID=MS.gene69477.t1.exon1;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40983618 | 40983623 | 40983618 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| chr8.1 | exon | 40983719 | 40983928 | 40983719 | ID=MS.gene69477.t1.exon2;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40983719 | 40983928 | 40983719 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| chr8.1 | exon | 40984563 | 40984634 | 40984563 | ID=MS.gene69477.t1.exon3;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40984563 | 40984634 | 40984563 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| chr8.1 | exon | 40984732 | 40984778 | 40984732 | ID=MS.gene69477.t1.exon4;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40984732 | 40984778 | 40984732 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| chr8.1 | exon | 40984983 | 40985012 | 40984983 | ID=MS.gene69477.t1.exon5;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40984983 | 40985012 | 40984983 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| chr8.1 | exon | 40985353 | 40985707 | 40985353 | ID=MS.gene69477.t1.exon6;Parent=MS.gene69477.t1 |
| chr8.1 | CDS | 40985353 | 40985707 | 40985353 | ID=cds.MS.gene69477.t1;Parent=MS.gene69477.t1 |
| Gene Sequence |
| Protein sequence |
