AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69722


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69722.t1 MTR_3g080410 96.133 362 14 0 1 362 1 362 0.0 684
MS.gene69722.t1 MTR_5g085580 73.684 342 90 0 20 361 19 360 0.0 528
MS.gene69722.t1 MTR_1g056640 66.055 327 111 0 22 348 34 360 7.46e-158 452
MS.gene69722.t1 MTR_1g077990 48.788 330 165 4 19 347 24 350 2.92e-101 305
MS.gene69722.t1 MTR_4g084480 44.875 361 189 5 3 362 4 355 3.17e-101 304
MS.gene69722.t1 MTR_4g084480 44.875 361 189 5 3 362 11 362 3.91e-101 304
MS.gene69722.t1 MTR_4g084480 44.875 361 189 5 3 362 11 362 3.95e-101 304
MS.gene69722.t1 MTR_4g052970 47.164 335 165 5 22 353 25 350 1.00e-100 303
MS.gene69722.t1 MTR_2g086530 43.750 336 184 3 9 343 12 343 3.48e-95 289
MS.gene69722.t1 MTR_2g086530 45.031 322 172 3 23 343 5 322 4.37e-95 288
MS.gene69722.t1 MTR_4g010200 44.986 349 186 4 4 351 13 356 8.60e-95 288
MS.gene69722.t1 MTR_2g019345 45.614 342 178 6 7 343 1 339 2.57e-93 284
MS.gene69722.t1 MTR_6g088885 41.429 350 203 2 1 349 1 349 1.20e-91 283
MS.gene69722.t1 MTR_7g053500 43.925 321 175 4 27 343 27 346 1.70e-91 282
MS.gene69722.t1 MTR_1g007810 44.828 319 169 4 26 342 16 329 1.44e-89 273
MS.gene69722.t1 MTR_1g031900 41.429 350 200 3 4 349 1 349 1.68e-89 278
MS.gene69722.t1 MTR_4g069940 42.690 342 189 4 4 343 10 346 2.03e-89 276
MS.gene69722.t1 MTR_1g031900 41.429 350 200 3 4 349 1 349 2.39e-89 277
MS.gene69722.t1 MTR_8g012400 40.698 344 199 4 4 343 7 349 1.14e-88 275
MS.gene69722.t1 MTR_3g065460 41.926 353 195 4 1 349 3 349 8.53e-88 273
MS.gene69722.t1 MTR_4g088155 39.306 346 203 3 7 346 4 348 2.63e-87 271
MS.gene69722.t1 MTR_3g116510 43.252 326 182 3 20 343 21 345 7.75e-87 270
MS.gene69722.t1 MTR_4g114850 42.683 328 186 2 19 345 19 345 2.28e-85 263
MS.gene69722.t1 MTR_4g114850 42.683 328 186 2 19 345 19 345 2.65e-85 263
MS.gene69722.t1 MTR_4g114850 42.683 328 186 2 19 345 19 345 3.42e-85 263
MS.gene69722.t1 MTR_4g132280 40.169 356 194 4 4 341 8 362 3.51e-85 267
MS.gene69722.t1 MTR_1g022160 42.812 320 180 3 26 343 24 342 4.24e-85 264
MS.gene69722.t1 MTR_1g022160 42.812 320 180 3 26 343 24 342 2.44e-84 264
MS.gene69722.t1 MTR_1g022160 42.812 320 180 3 26 343 24 342 2.70e-84 264
MS.gene69722.t1 MTR_1g022160 42.812 320 180 3 26 343 24 342 2.85e-84 264
MS.gene69722.t1 MTR_5g078200 41.667 336 187 3 1 333 3 332 9.46e-82 261
MS.gene69722.t1 MTR_3g083580 38.720 328 196 3 23 346 23 349 1.35e-81 257
MS.gene69722.t1 MTR_4g083500 43.824 340 180 8 26 362 44 375 8.91e-81 256
MS.gene69722.t1 MTR_7g026340 42.991 321 174 6 24 342 21 334 8.97e-81 254
MS.gene69722.t1 MTR_4g076570 42.679 321 177 4 23 343 19 332 1.41e-80 250
MS.gene69722.t1 MTR_5g078200 43.000 300 167 2 37 333 1 299 1.33e-78 253
MS.gene69722.t1 MTR_1g052430 42.593 324 177 5 21 343 27 342 2.24e-78 246
MS.gene69722.t1 MTR_8g085720 38.261 345 202 3 4 345 11 347 3.13e-78 249
MS.gene69722.t1 MTR_4g076470 42.679 321 170 8 25 345 22 328 6.88e-78 243
MS.gene69722.t1 MTR_8g102340 40.000 330 163 3 20 349 22 316 1.06e-77 247
MS.gene69722.t1 MTR_4g076255 43.519 324 163 8 25 345 24 330 6.07e-77 240
MS.gene69722.t1 MTR_4g076490 41.742 333 181 7 25 357 96 415 9.53e-76 240
MS.gene69722.t1 MTR_4g076440 41.543 337 182 9 10 345 6 328 4.11e-75 235
MS.gene69722.t1 MTR_4g076430 42.547 322 169 9 25 345 22 328 5.21e-75 235
MS.gene69722.t1 MTR_7g053500 44.610 269 144 4 79 343 2 269 1.26e-74 236
MS.gene69722.t1 MTR_4g076500 40.127 314 179 4 22 335 74 378 1.94e-73 233
MS.gene69722.t1 MTR_2g034470 39.450 327 185 8 25 349 29 344 9.27e-71 225
MS.gene69722.t1 MTR_8g012400 42.007 269 151 4 79 343 2 269 1.56e-69 223
MS.gene69722.t1 MTR_2g034480 40.663 332 180 10 25 352 26 344 1.06e-68 220
MS.gene69722.t1 MTR_2g034470 39.185 319 181 8 33 349 2 309 1.14e-67 216
MS.gene69722.t1 MTR_2g034440 38.801 317 183 7 25 339 21 328 1.72e-66 213
MS.gene69722.t1 MTR_7g081350 36.842 342 206 7 1 341 1 333 2.09e-66 213
MS.gene69722.t1 MTR_7g081370 36.812 345 190 9 1 341 1 321 2.14e-61 200
MS.gene69722.t1 MTR_3g116510 45.283 212 115 1 132 343 1 211 1.17e-59 195
MS.gene69722.t1 MTR_2g027560 37.349 332 194 9 20 343 22 347 1.33e-55 189
MS.gene69722.t1 MTR_4g112025 36.182 351 206 12 2 343 9 350 1.83e-53 184
MS.gene69722.t1 MTR_8g092070 34.441 331 203 10 26 349 34 357 1.22e-51 181
MS.gene69722.t1 MTR_1g010120 36.086 327 191 11 26 343 26 343 9.36e-51 176
MS.gene69722.t1 MTR_4g124440 34.637 358 209 13 4 352 11 352 1.58e-50 176
MS.gene69722.t1 MTR_7g085390 34.097 349 205 13 1 336 1 337 7.73e-50 174
MS.gene69722.t1 MTR_6g032820 35.043 351 196 15 3 338 8 341 2.05e-48 169
MS.gene69722.t1 MTR_1g053320 34.954 329 195 11 26 343 30 350 6.46e-47 166
MS.gene69722.t1 MTR_3g095050 32.386 352 217 15 9 349 14 355 3.75e-45 161
MS.gene69722.t1 MTR_3g108600 34.639 332 184 11 19 343 24 329 1.22e-44 160
MS.gene69722.t1 MTR_5g081720 32.131 305 195 8 42 342 53 349 1.28e-43 155
MS.gene69722.t1 MTR_3g031770 33.846 325 201 9 25 343 26 342 1.77e-42 154
MS.gene69722.t1 MTR_4g134280 37.768 233 133 9 114 341 3 228 1.46e-37 139
MS.gene69722.t1 MTR_4g036775 41.346 104 56 2 240 343 77 175 3.95e-17 79.7
MS.gene69722.t1 MTR_4g036775 42.029 69 40 0 24 92 20 88 2.61e-11 63.2
MS.gene69722.t1 MTR_4g036680 41.346 104 56 2 240 343 77 175 9.21e-17 79.0
MS.gene69722.t1 MTR_4g036680 42.029 69 40 0 23 91 19 87 2.33e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69722.t1 AT2G05790 72.754 334 91 0 22 355 21 354 0.0 530
MS.gene69722.t1 AT5G55180 68.111 323 103 0 21 343 22 344 2.48e-158 452
MS.gene69722.t1 AT5G55180 68.111 323 103 0 21 343 22 344 2.75e-158 452
MS.gene69722.t1 AT4G26830 64.201 338 119 2 9 346 9 344 2.21e-148 427
MS.gene69722.t1 AT4G26830 65.231 325 112 1 22 346 25 348 2.45e-148 427
MS.gene69722.t1 AT1G32860 47.853 326 165 4 25 347 28 351 2.95e-103 311
MS.gene69722.t1 AT2G27500 46.687 332 170 3 23 353 26 351 7.08e-100 300
MS.gene69722.t1 AT2G27500 46.687 332 170 3 23 353 26 351 1.14e-99 300
MS.gene69722.t1 AT4G18340 45.245 347 181 4 8 347 10 354 2.72e-98 296
MS.gene69722.t1 AT4G18340 45.376 346 180 4 8 346 10 353 4.99e-98 296
MS.gene69722.t1 AT1G30080 45.115 348 182 4 3 343 7 352 6.45e-98 296
MS.gene69722.t1 AT1G30080 47.352 321 166 3 24 343 34 352 1.06e-97 296
MS.gene69722.t1 AT5G24318 45.794 321 167 4 25 343 29 344 1.32e-96 292
MS.gene69722.t1 AT5G42100 47.147 333 168 6 15 343 18 346 2.11e-96 293
MS.gene69722.t1 AT5G42100 47.147 333 168 6 15 343 18 346 2.26e-96 293
MS.gene69722.t1 AT5G24318 44.543 339 181 4 25 361 29 362 1.11e-95 292
MS.gene69722.t1 AT3G15800 47.561 328 167 4 27 352 44 368 2.29e-95 290
MS.gene69722.t1 AT5G24318 44.543 339 181 4 25 361 29 362 2.68e-95 291
MS.gene69722.t1 AT2G16230 44.720 322 176 2 26 346 25 345 8.25e-92 284
MS.gene69722.t1 AT5G42720 44.638 345 182 4 4 346 10 347 1.11e-91 281
MS.gene69722.t1 AT2G26600 43.413 334 184 3 16 345 21 353 3.55e-90 276
MS.gene69722.t1 AT5G56590 41.411 326 188 3 23 346 23 347 2.34e-87 273
MS.gene69722.t1 AT4G29360 42.857 343 193 2 6 346 15 356 1.93e-86 271
MS.gene69722.t1 AT4G14080 41.088 331 191 3 19 346 35 364 4.34e-86 268
MS.gene69722.t1 AT4G34480 44.514 319 175 2 26 343 26 343 6.44e-86 264
MS.gene69722.t1 AT4G29360 41.159 345 202 1 2 346 3 346 2.08e-85 268
MS.gene69722.t1 AT3G07320 40.841 333 190 5 27 355 26 355 1.11e-84 264
MS.gene69722.t1 AT2G01630 40.979 327 189 2 26 349 23 348 1.96e-84 261
MS.gene69722.t1 AT2G01630 40.979 327 189 2 26 349 23 348 4.23e-84 262
MS.gene69722.t1 AT4G34480 44.514 319 175 2 26 343 26 343 4.94e-84 264
MS.gene69722.t1 AT3G23770 40.176 341 195 4 19 353 30 367 5.30e-84 263
MS.gene69722.t1 AT2G01630 40.979 327 189 2 26 349 23 348 4.30e-83 261
MS.gene69722.t1 AT1G66250 40.597 335 194 3 18 349 24 356 5.37e-83 261
MS.gene69722.t1 AT1G11820 40.125 319 187 3 26 341 44 361 5.84e-81 252
MS.gene69722.t1 AT3G13560 39.939 328 191 4 19 341 17 343 4.68e-80 254
MS.gene69722.t1 AT3G13560 39.939 328 191 4 19 341 17 343 4.68e-80 254
MS.gene69722.t1 AT3G13560 39.939 328 191 4 19 341 17 343 4.68e-80 254
MS.gene69722.t1 AT3G13560 39.939 328 191 4 19 341 17 343 4.68e-80 254
MS.gene69722.t1 AT3G13560 39.939 328 191 4 19 341 17 343 4.68e-80 254
MS.gene69722.t1 AT1G11820 40.125 319 187 3 26 341 44 361 8.35e-80 252
MS.gene69722.t1 AT1G11820 40.125 319 187 3 26 341 44 361 1.81e-79 252
MS.gene69722.t1 AT2G27500 44.604 278 147 3 77 353 2 273 1.43e-78 244
MS.gene69722.t1 AT4G16260 39.710 345 196 7 4 348 5 337 4.44e-76 238
MS.gene69722.t1 AT3G57270 41.231 325 180 7 23 345 24 339 4.76e-73 230
MS.gene69722.t1 AT3G46570 42.000 350 182 12 1 343 7 342 9.52e-72 228
MS.gene69722.t1 AT4G16260 40.190 316 180 6 33 348 2 308 5.02e-71 224
MS.gene69722.t1 AT3G55430 38.690 336 187 12 14 343 19 341 5.27e-70 226
MS.gene69722.t1 AT2G26600 42.913 254 143 2 93 345 7 259 2.67e-69 219
MS.gene69722.t1 AT3G61810 37.386 329 187 5 26 346 55 372 1.18e-68 220
MS.gene69722.t1 AT1G77780 39.650 343 192 9 4 343 2 332 4.70e-66 213
MS.gene69722.t1 AT3G57260 37.427 342 197 8 4 345 14 338 3.02e-65 210
MS.gene69722.t1 AT3G57260 37.427 342 197 8 4 345 30 354 6.32e-65 210
MS.gene69722.t1 AT5G24318 44.934 227 121 1 135 361 1 223 3.21e-64 207
MS.gene69722.t1 AT2G39640 35.756 344 207 10 3 343 6 338 2.05e-60 203
MS.gene69722.t1 AT1G77790 36.443 343 208 7 3 343 7 341 1.87e-59 196
MS.gene69722.t1 AT3G57240 36.875 320 188 8 26 345 35 340 8.39e-59 194
MS.gene69722.t1 AT5G20390 36.364 341 205 9 3 341 11 341 1.54e-58 193
MS.gene69722.t1 AT4G34480 47.186 231 120 2 114 343 3 232 2.70e-58 194
MS.gene69722.t1 AT5G20330 38.838 327 189 8 19 343 27 344 5.80e-58 192
MS.gene69722.t1 AT5G20340 37.764 331 193 9 16 343 33 353 7.36e-56 186
MS.gene69722.t1 AT3G24330 33.799 358 218 12 2 349 16 364 3.47e-54 186
MS.gene69722.t1 AT1G33220 36.012 336 196 7 9 343 17 334 5.98e-53 178
MS.gene69722.t1 AT5G18220 33.898 354 214 11 5 351 13 353 5.65e-51 177
MS.gene69722.t1 AT2G19440 35.088 342 198 14 19 349 16 344 1.61e-50 176
MS.gene69722.t1 AT2G19440 35.088 342 198 14 19 349 16 344 1.61e-50 176
MS.gene69722.t1 AT4G17180 34.111 343 205 11 24 357 23 353 1.73e-50 176
MS.gene69722.t1 AT3G55780 29.375 320 216 7 42 356 51 365 8.93e-50 171
MS.gene69722.t1 AT1G64760 34.706 340 202 14 24 353 23 352 3.47e-49 172
MS.gene69722.t1 AT1G64760 34.706 340 202 14 24 353 23 352 3.47e-49 172
MS.gene69722.t1 AT5G58090 36.111 324 185 13 24 336 20 332 1.79e-48 170
MS.gene69722.t1 AT5G64790 34.181 354 215 11 4 349 8 351 7.77e-48 169
MS.gene69722.t1 AT4G31140 33.718 347 213 13 19 356 20 358 3.89e-47 167
MS.gene69722.t1 AT3G04010 32.493 357 221 12 6 353 15 360 7.34e-46 164
MS.gene69722.t1 AT5G20870 33.618 351 207 14 2 336 7 347 2.24e-45 162
MS.gene69722.t1 AT5G20560 33.433 335 210 9 4 335 12 336 2.09e-44 156
MS.gene69722.t1 AT5G58480 33.435 329 203 9 25 345 25 345 6.86e-43 155

Find 0 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATGTAAACAAAAAAGA+TGG + 22525:20147-20166 MS.gene69722:intergenic 15.0%
!!! AAAAAGCGCAAATAAATAAA+CGG + 22525:21250-21269 MS.gene69722:intergenic 20.0%
!!! TTATTAATTGTTGTTACAGA+TGG - 22525:20367-20386 MS.gene69722:CDS 20.0%
! TAATATAAACATGTGTGTGT+AGG - 22525:20200-20219 MS.gene69722:CDS 25.0%
! TTTAATGAAAATGGGAAAGT+GGG - 22525:21267-21286 MS.gene69722:intron 25.0%
!! TTTTAATGAAAATGGGAAAG+TGG - 22525:21266-21285 MS.gene69722:intron 25.0%
!!! GTTTAGCATTGGTTTAATTA+CGG + 22525:20863-20882 MS.gene69722:intergenic 25.0%
!!! TTGCGCTTTTTAATGAAAAT+GGG - 22525:21259-21278 MS.gene69722:intron 25.0%
!!! TTTAGCATTGGTTTAATTAC+GGG + 22525:20862-20881 MS.gene69722:intergenic 25.0%
!!! TTTGCGCTTTTTAATGAAAA+TGG - 22525:21258-21277 MS.gene69722:intron 25.0%
GTTAAGAAGATTCTGAACAA+CGG - 22525:21192-21211 MS.gene69722:intron 30.0%
TATAGAAGAGTTGTTCGTTT+GGG + 22525:20561-20580 MS.gene69722:intergenic 30.0%
TCATAAACCTTCTTCATATC+AGG + 22525:21327-21346 MS.gene69722:intergenic 30.0%
TGTATGTGAAAGTGACTTAT+CGG + 22525:20236-20255 MS.gene69722:intergenic 30.0%
TTAACTACTTTGAATGCTGA+GGG + 22525:20436-20455 MS.gene69722:intergenic 30.0%
! GTTTTATCCTGATATGAAGA+AGG - 22525:21317-21336 MS.gene69722:intron 30.0%
! TTTGTGAATGTTTTTCATGG+CGG + 22525:20722-20741 MS.gene69722:intergenic 30.0%
!! AAGAGATTTTGATGGAATTG+TGG + 22525:20765-20784 MS.gene69722:intergenic 30.0%
!! AGCTTTGTGAATGTTTTTCA+TGG + 22525:20725-20744 MS.gene69722:intergenic 30.0%
!! GTTAAGCTTCTAAAATCACA+AGG - 22525:20451-20470 MS.gene69722:CDS 30.0%
!!! TAATATTTTAACCCGTTACC+CGG + 22525:21009-21028 MS.gene69722:intergenic 30.0%
AATTACGGGTTCTATGAGAT+CGG + 22525:20848-20867 MS.gene69722:intergenic 35.0%
CAAAAAAGATGGTGAAGAAG+TGG + 22525:20136-20155 MS.gene69722:intergenic 35.0%
CTTAACTACTTTGAATGCTG+AGG + 22525:20437-20456 MS.gene69722:intergenic 35.0%
GTATAGAAGAGTTGTTCGTT+TGG + 22525:20562-20581 MS.gene69722:intergenic 35.0%
TAAAATCACAAGGAATCGAC+CGG - 22525:20461-20480 MS.gene69722:CDS 35.0%
TTATGATGTTCCGTTTACTG+TGG - 22525:21341-21360 MS.gene69722:intron 35.0%
! GATTGGTGAAGAGATTTTGA+TGG + 22525:20773-20792 MS.gene69722:intergenic 35.0%
! GTTTACGGTTACTTTGATTC+CGG + 22525:20536-20555 MS.gene69722:intergenic 35.0%
! TTGTGAATGTTTTTCATGGC+GGG + 22525:20721-20740 MS.gene69722:intergenic 35.0%
!! AGATTTTGATGGAATTGTGG+AGG + 22525:20762-20781 MS.gene69722:intergenic 35.0%
!! TCCGGATAAGGATTTTAGAA+CGG + 22525:20512-20531 MS.gene69722:intergenic 35.0%
AAAATCACAAGGAATCGACC+GGG - 22525:20462-20481 MS.gene69722:CDS 40.0%
AAGAAGATTCTGAACAACGG+TGG - 22525:21195-21214 MS.gene69722:intron 40.0%
AAGATGGTGAAGAAGTGGAA+TGG + 22525:20131-20150 MS.gene69722:intergenic 40.0%
AATTCCGTTGGAGTGAACTA+TGG - 22525:20391-20410 MS.gene69722:CDS 40.0%
AGAAGATTCTGAACAACGGT+GGG - 22525:21196-21215 MS.gene69722:intron 40.0%
AGATTCGCATTCGGTCTTAA+AGG + 22525:21225-21244 MS.gene69722:intergenic 40.0%
ATTACGGGTTCTATGAGATC+GGG + 22525:20847-20866 MS.gene69722:intergenic 40.0%
ATTCGCATTCGGTCTTAAAG+GGG + 22525:21223-21242 MS.gene69722:intergenic 40.0%
CTAAAATCCTTATCCGGATC+CGG - 22525:20514-20533 MS.gene69722:CDS 40.0%
GATTCGCATTCGGTCTTAAA+GGG + 22525:21224-21243 MS.gene69722:intergenic 40.0%
GTTACAGATGGTAATTCCGT+TGG - 22525:20379-20398 MS.gene69722:CDS 40.0%
TAAACGGTCAGATTCGCATT+CGG + 22525:21234-21253 MS.gene69722:intergenic 40.0%
TAGAGTGGTTGTGAGTGAAA+CGG - 22525:21095-21114 MS.gene69722:intron 40.0%
TCAAATACGACGACGTTTCA+CGG + 22525:20891-20910 MS.gene69722:intergenic 40.0%
TCAATACAACGACGTTAGAG+TGG - 22525:21080-21099 MS.gene69722:intron 40.0%
TCATCACTATCACCTTTCGA+AGG + 22525:21126-21145 MS.gene69722:intergenic 40.0%
TGAAACGTCGTCGTATTTGA+TGG - 22525:20891-20910 MS.gene69722:CDS 40.0%
TTGTTCGTTTGGGAGGTTTA+CGG + 22525:20551-20570 MS.gene69722:intergenic 40.0%
! AAAGGTGATAGTGATGAGGT+GGG - 22525:21129-21148 MS.gene69722:intron 40.0%
! TGTGAATGTTTTTCATGGCG+GGG + 22525:20720-20739 MS.gene69722:intergenic 40.0%
! TTCGAAAGGTGATAGTGATG+AGG - 22525:21125-21144 MS.gene69722:intron 40.0%
! TTGACTCGTAGGCGAAAAAT+GGG + 22525:20927-20946 MS.gene69722:intergenic 40.0%
! TTTGACTCGTAGGCGAAAAA+TGG + 22525:20928-20947 MS.gene69722:intergenic 40.0%
!! GCCGTTCTAAAATCCTTATC+CGG - 22525:20508-20527 MS.gene69722:CDS 40.0%
!!! ATAAGGATTTTAGAACGGCC+GGG + 22525:20507-20526 MS.gene69722:intergenic 40.0%
!!! ATGGCTTCGATTTGGGTTTT+GGG + 22525:20643-20662 MS.gene69722:intergenic 40.0%
!!! GATAAGGATTTTAGAACGGC+CGG + 22525:20508-20527 MS.gene69722:intergenic 40.0%
!!! GGTAAACGACGACGTTTTTT+TGG + 22525:20618-20637 MS.gene69722:intergenic 40.0%
!!! GTTTTTTTGGAGCCATGTGA+GGG + 22525:20605-20624 MS.gene69722:intergenic 40.0%
AGAAGAGTTGTTCGTTTGGG+AGG + 22525:20558-20577 MS.gene69722:intergenic 45.0%
AGAGTGGTTGTGAGTGAAAC+GGG - 22525:21096-21115 MS.gene69722:intron 45.0%
CCAAAATTCCTCTCCGAAGT+AGG + 22525:21294-21313 MS.gene69722:intergenic 45.0%
CCAATCGCTTTATCTGCTCT+CGG - 22525:20787-20806 MS.gene69722:CDS 45.0%
CTACTTTGAATGCTGAGGGT+AGG + 22525:20432-20451 MS.gene69722:intergenic 45.0%
GAAGAGTTACCGTGACGTTT+CGG - 22525:21371-21390 MS.gene69722:CDS 45.0%
GAAGCAATACCTGCAAGTAG+TGG + 22525:20109-20128 MS.gene69722:intergenic 45.0%
GAGGTATGAGGAAATGAGGA+TGG + 22525:20080-20099 MS.gene69722:intergenic 45.0%
TCACGGAGGAAGTTTAGCAT+TGG + 22525:20874-20893 MS.gene69722:intergenic 45.0%
TCCTCTTATCCGTCTTCAAC+CGG - 22525:20811-20830 MS.gene69722:CDS 45.0%
TGATGTTCCGTTTACTGTGG+CGG - 22525:21344-21363 MS.gene69722:intron 45.0%
TTGAATGACCCGGTTGAAGA+CGG + 22525:20823-20842 MS.gene69722:intergenic 45.0%
TTTGATTCCGGATCCGGATA+AGG + 22525:20524-20543 MS.gene69722:intergenic 45.0%
! CCTACTTCGGAGAGGAATTT+TGG - 22525:21291-21310 MS.gene69722:intron 45.0%
! GAAAGGTGATAGTGATGAGG+TGG - 22525:21128-21147 MS.gene69722:intron 45.0%
! GGTTACTTTGATTCCGGATC+CGG + 22525:20530-20549 MS.gene69722:intergenic 45.0%
! GTGAGAGGTATGAGGAAATG+AGG + 22525:20084-20103 MS.gene69722:intergenic 45.0%
! TAGTGGAAGTGAGAGGTATG+AGG + 22525:20092-20111 MS.gene69722:intergenic 45.0%
!! CGCTTTGTTTCGTGAAAACC+CGG - 22525:20972-20991 MS.gene69722:CDS 45.0%
!! GCTTTGTTTCGTGAAAACCC+GGG - 22525:20973-20992 MS.gene69722:CDS 45.0%
!!! CGTTTTTTTGGAGCCATGTG+AGG + 22525:20606-20625 MS.gene69722:intergenic 45.0%
!!! GAGGGCGTAGGAAAGTTTTT+TGG + 22525:20587-20606 MS.gene69722:intergenic 45.0%
!!! GATGGCTTCGATTTGGGTTT+TGG + 22525:20644-20663 MS.gene69722:intergenic 45.0%
!!! TGGCTTCGATTTGGGTTTTG+GGG + 22525:20642-20661 MS.gene69722:intergenic 45.0%
AAACCCGGGTAATGTGGATC+CGG - 22525:20987-21006 MS.gene69722:CDS 50.0%
AACTTTCCTACGCCCTCACA+TGG - 22525:20590-20609 MS.gene69722:CDS 50.0%
AATACGACGACGTTTCACGG+AGG + 22525:20888-20907 MS.gene69722:intergenic 50.0%
ATGTTCCGTTTACTGTGGCG+GGG - 22525:21346-21365 MS.gene69722:intron 50.0%
CCGAGAGCAGATAAAGCGAT+TGG + 22525:20790-20809 MS.gene69722:intergenic 50.0%
CCTCTTATCCGTCTTCAACC+GGG - 22525:20812-20831 MS.gene69722:CDS 50.0%
CTCTCACTTCCACTACTTGC+AGG - 22525:20097-20116 MS.gene69722:CDS 50.0%
GACGAAGACTTCGTTACCGA+CGG + 22525:20668-20687 MS.gene69722:intergenic 50.0%
GAGATCGGGTTTGAATGACC+CGG + 22525:20833-20852 MS.gene69722:intergenic 50.0%
GATGTTCCGTTTACTGTGGC+GGG - 22525:21345-21364 MS.gene69722:intron 50.0%
GCGACCATAGTTCACTCCAA+CGG + 22525:20398-20417 MS.gene69722:intergenic 50.0%
GGTAATGTGGATCCGGGTAA+CGG - 22525:20994-21013 MS.gene69722:CDS 50.0%
GTAATGTGGATCCGGGTAAC+GGG - 22525:20995-21014 MS.gene69722:CDS 50.0%
TCGTGAAAACCCGGGTAATG+TGG - 22525:20981-21000 MS.gene69722:CDS 50.0%
TGGGAAAGTGGGACCTACTT+CGG - 22525:21278-21297 MS.gene69722:intron 50.0%
TGGTTGTGAGTGAAACGGGT+TGG - 22525:21100-21119 MS.gene69722:intron 50.0%
TTACCCGGATCCACATTACC+CGG + 22525:20994-21013 MS.gene69722:intergenic 50.0%
TTCAACCCCGCCACAGTAAA+CGG + 22525:21354-21373 MS.gene69722:intergenic 50.0%
! AACGTCAGCGTTTGACTCGT+AGG + 22525:20938-20957 MS.gene69722:intergenic 50.0%
! CTGCAAGTAGTGGAAGTGAG+AGG + 22525:20099-20118 MS.gene69722:intergenic 50.0%
!! TGTTTTTCATGGCGGGGATG+AGG + 22525:20714-20733 MS.gene69722:intergenic 50.0%
!!! CTTCGATTTGGGTTTTGGGG+TGG + 22525:20639-20658 MS.gene69722:intergenic 50.0%
AACCCGGGTAATGTGGATCC+GGG - 22525:20988-21007 MS.gene69722:CDS 55.0%
AAGTGGGACCTACTTCGGAG+AGG - 22525:21283-21302 MS.gene69722:intron 55.0%
CAAACTCTACGACACCGACC+CGG - 22525:20486-20505 MS.gene69722:CDS 55.0%
CAAATCGAAGCCATCGCCGT+CGG - 22525:20649-20668 MS.gene69722:CDS 55.0%
CAGAACGCTGCTGCGTACAA+CGG - 22525:21162-21181 MS.gene69722:intron 55.0%
CCCGGTTGAAGACGGATAAG+AGG + 22525:20815-20834 MS.gene69722:intergenic 55.0%
GACGGCGATGGCTTCGATTT+GGG + 22525:20650-20669 MS.gene69722:intergenic 55.0%
TACCCGGATCCACATTACCC+GGG + 22525:20993-21012 MS.gene69722:intergenic 55.0%
TGTACGCAGCAGCGTTCTGT+GGG + 22525:21161-21180 MS.gene69722:intergenic 55.0%
TTGTACGCAGCAGCGTTCTG+TGG + 22525:21162-21181 MS.gene69722:intergenic 55.0%
! CATGGCGGGGATGAGGTATT+TGG + 22525:20707-20726 MS.gene69722:intergenic 55.0%
!! CGGTGTCGTAGAGTTTGACC+CGG + 22525:20483-20502 MS.gene69722:intergenic 55.0%
!! GAAACGGGTTGGCCTTCGAA+AGG - 22525:21111-21130 MS.gene69722:intron 55.0%
!!! GGATTTTAGAACGGCCGGGT+CGG + 22525:20503-20522 MS.gene69722:intergenic 55.0%
CGACGGCGATGGCTTCGATT+TGG + 22525:20651-20670 MS.gene69722:intergenic 60.0%
GACTTCGTTACCGACGGCGA+TGG + 22525:20662-20681 MS.gene69722:intergenic 60.0%
GTACGCAGCAGCGTTCTGTG+GGG + 22525:21160-21179 MS.gene69722:intergenic 60.0%
TTACCGTGACGTTTCGGCGC+CGG - 22525:21377-21396 MS.gene69722:CDS 60.0%
! GGCGGGGATGAGGTATTTGG+TGG + 22525:20704-20723 MS.gene69722:intergenic 60.0%
! TTGGAGCCATGTGAGGGCGT+AGG + 22525:20599-20618 MS.gene69722:intergenic 60.0%
TACCGTGACGTTTCGGCGCC+GGG - 22525:21378-21397 MS.gene69722:CDS 65.0%
! TTCCCGGCGCCGAAACGTCA+CGG + 22525:21383-21402 MS.gene69722:intergenic 65.0%
! GACGTTTCGGCGCCGGGAAG+CGG - 22525:21384-21403 MS.gene69722:CDS 70.0%


Chromosome Type Strat End Strand Name
22525 gene 20055 21410 20055 ID=MS.gene69722
22525 mRNA 20055 21410 20055 ID=MS.gene69722.t1;Parent=MS.gene69722
22525 exon 21347 21410 21347 ID=MS.gene69722.t1.exon1;Parent=MS.gene69722.t1
22525 CDS 21347 21410 21347 ID=cds.MS.gene69722.t1;Parent=MS.gene69722.t1
22525 exon 20055 21079 20055 ID=MS.gene69722.t1.exon2;Parent=MS.gene69722.t1
22525 CDS 20055 21079 20055 ID=cds.MS.gene69722.t1;Parent=MS.gene69722.t1
Gene Sequence

>MS.gene69722

ATGCATCGTCTACTCATTCTTTCCATCCTCATTTCCTCATACCTCTCACTTCCACTACTTGCAGGTATTGCTTCCATTCCACTTCTTCACCATCTTTTTTGTTTACATTATTGCATCTACTAACATTTCTGATTGAATGCGTGTTTAATATAAACATGTGTGTGTAGGTGTCTTAACACCGATAAGTCACTTTCACATACACACGTGTACATACACTGTATGTGATTACATTTAATTATTATGTTTATATGATAGATAGATTATTGTTACTTGTTTTCATGCATGTATAATGCTAATATTGTTTTCATTTCTTTATTAATTGTTGTTACAGATGGTAATTCCGTTGGAGTGAACTATGGTCGCATAGCAAACAACCTACCCTCAGCATTCAAAGTAGTTAAGCTTCTAAAATCACAAGGAATCGACCGGGTCAAACTCTACGACACCGACCCGGCCGTTCTAAAATCCTTATCCGGATCCGGAATCAAAGTAACCGTAAACCTCCCAAACGAACAACTCTTCTATACAGCCAAAAAACTTTCCTACGCCCTCACATGGCTCCAAAAAAACGTCGTCGTTTACCACCCCAAAACCCAAATCGAAGCCATCGCCGTCGGTAACGAAGTCTTCGTCGACACACACAACACCACCAAATACCTCATCCCCGCCATGAAAAACATTCACAAAGCTTTAATCAAATTCAACCTCCACAATTCCATCAAAATCTCTTCACCAATCGCTTTATCTGCTCTCGGATCCTCTTATCCGTCTTCAACCGGGTCATTCAAACCCGATCTCATAGAACCCGTAATTAAACCAATGCTAAACTTCCTCCGTGAAACGTCGTCGTATTTGATGGTCAACGTTTACCCATTTTTCGCCTACGAGTCAAACGCTGACGTTATTTCTTTAAACTACGCTTTGTTTCGTGAAAACCCGGGTAATGTGGATCCGGGTAACGGGTTAAAATATTACAACATCTTCGACGCACAAATCGACGCTGTTTTTGCAGCGCTTAACAAGCTTCAATACAACGACGTTAGAGTGGTTGTGAGTGAAACGGGTTGGCCTTCGAAAGGTGATAGTGATGAGGTGGGTGCATCCCCACAGAACGCTGCTGCGTACAACGGTAATCTTGTTAAGAAGATTCTGAACAACGGTGGGACCCCTTTAAGACCGAATGCGAATCTGACCGTTTATTTATTTGCGCTTTTTAATGAAAATGGGAAAGTGGGACCTACTTCGGAGAGGAATTTTGGAATGTTTTATCCTGATATGAAGAAGGTTTATGATGTTCCGTTTACTGTGGCGGGGTTGAAGAGTTACCGTGACGTTTCGGCGCCGGGAAGCGGCTGA

Protein sequence

>MS.gene69722.t1

MHRLLILSILISSYLSLPLLADGNSVGVNYGRIANNLPSAFKVVKLLKSQGIDRVKLYDTDPAVLKSLSGSGIKVTVNLPNEQLFYTAKKLSYALTWLQKNVVVYHPKTQIEAIAVGNEVFVDTHNTTKYLIPAMKNIHKALIKFNLHNSIKISSPIALSALGSSYPSSTGSFKPDLIEPVIKPMLNFLRETSSYLMVNVYPFFAYESNADVISLNYALFRENPGNVDPGNGLKYYNIFDAQIDAVFAALNKLQYNDVRVVVSETGWPSKGDSDEVGASPQNAAAYNGNLVKKILNNGGTPLRPNANLTVYLFALFNENGKVGPTSERNFGMFYPDMKKVYDVPFTVAGLKSYRDVSAPGSG