Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69891.t1 | XP_013469022.1 | 94.6 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 1.00E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69891.t1 | Q94AH1 | 65.4 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 2.0e-107 | 390.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69891.t1 | I3SZ53 | 94.6 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 7.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene69891 | 0.82587 | 3.70E-54 | -1.69E-46 |
| MS.gene049343 | MS.gene69891 | 0.853627 | 2.11E-61 | -1.69E-46 |
| MS.gene049711 | MS.gene69891 | 0.833296 | 5.79E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene69891 | 0.812098 | 5.03E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene69891 | 0.813781 | 2.15E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene69891 | 0.829218 | 5.82E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene69891 | 0.816723 | 4.77E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene69891 | 0.801947 | 7.08E-49 | -1.69E-46 |
| MS.gene050905 | MS.gene69891 | -0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene69891 | 0.848659 | 5.32E-60 | -1.69E-46 |
| MS.gene051957 | MS.gene69891 | 0.809624 | 1.73E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene69891 | 0.851899 | 6.57E-61 | -1.69E-46 |
| MS.gene052773 | MS.gene69891 | 0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene69891 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene69891 | 0.80058 | 1.35E-48 | -1.69E-46 |
| MS.gene053145 | MS.gene69891 | 0.807021 | 6.20E-50 | -1.69E-46 |
| MS.gene053146 | MS.gene69891 | 0.800571 | 1.35E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene69891 | 0.846191 | 2.54E-59 | -1.69E-46 |
| MS.gene053272 | MS.gene69891 | -0.81655 | 5.22E-52 | -1.69E-46 |
| MS.gene053900 | MS.gene69891 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene69891 | 0.806296 | 8.81E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene69891 | 0.851375 | 9.25E-61 | -1.69E-46 |
| MS.gene055374 | MS.gene69891 | 0.836949 | 6.93E-57 | -1.69E-46 |
| MS.gene055586 | MS.gene69891 | 0.816307 | 5.92E-52 | -1.69E-46 |
| MS.gene055589 | MS.gene69891 | 0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene69891 | 0.836069 | 1.16E-56 | -1.69E-46 |
| MS.gene056050 | MS.gene69891 | 0.813192 | 2.90E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene69891 | 0.843209 | 1.61E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene69891 | 0.815313 | 9.85E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene69891 | 0.83239 | 9.71E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene69891 | 0.836957 | 6.90E-57 | -1.69E-46 |
| MS.gene057208 | MS.gene69891 | 0.822354 | 2.48E-53 | -1.69E-46 |
| MS.gene057855 | MS.gene69891 | 0.809735 | 1.63E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene69891 | 0.812972 | 3.24E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene69891 | 0.815913 | 7.25E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene69891 | 0.85414 | 1.50E-61 | -1.69E-46 |
| MS.gene058783 | MS.gene69891 | 0.835666 | 1.47E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene69891 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene69891 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene69891 | -0.840686 | 7.49E-58 | -1.69E-46 |
| MS.gene060352 | MS.gene69891 | 0.816481 | 5.41E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene69891 | 0.816561 | 5.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69891.t1 | MTR_1g081910 | 94.613 | 297 | 4 | 1 | 1 | 285 | 1 | 297 | 0.0 | 563 |
| MS.gene69891.t1 | MTR_4g109480 | 58.935 | 263 | 94 | 2 | 37 | 285 | 24 | 286 | 7.86e-100 | 294 |
| MS.gene69891.t1 | MTR_4g109480 | 55.779 | 199 | 74 | 2 | 37 | 221 | 24 | 222 | 5.93e-69 | 214 |
| MS.gene69891.t1 | MTR_4g109480 | 52.632 | 190 | 76 | 2 | 37 | 212 | 24 | 213 | 4.57e-57 | 183 |
| MS.gene69891.t1 | MTR_4g109480 | 51.852 | 189 | 77 | 2 | 37 | 211 | 24 | 212 | 8.95e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69891.t1 | AT3G05010 | 65.411 | 292 | 85 | 2 | 6 | 285 | 13 | 300 | 3.27e-139 | 394 |
| MS.gene69891.t1 | AT5G27210 | 67.037 | 270 | 77 | 1 | 28 | 285 | 28 | 297 | 4.26e-130 | 371 |
Find 50 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCCTTGTTTACTTCTTC+TGG | 0.137493 | 1.4:+66409564 | MS.gene69891:CDS |
| TTCTTCTGGAATGCTGTTTC+TGG | 0.158996 | 1.4:+66409578 | MS.gene69891:CDS |
| CTCGTGCTCACCGTTGTTTA+TGG | 0.242634 | 1.4:+66409886 | MS.gene69891:CDS |
| TATTGTTCATGTATCATTCT+AGG | 0.242876 | 1.4:+66409914 | MS.gene69891:CDS |
| ACTGGAAACGGCGCTGGTTT+TGG | 0.246426 | 1.4:+66410112 | MS.gene69891:CDS |
| ACTGCTGTATATTACATTTC+TGG | 0.250927 | 1.4:+66410273 | MS.gene69891:CDS |
| CTATATATCTATTTGCATTT+GGG | 0.257819 | 1.4:+66409794 | MS.gene69891:CDS |
| TTGTTTGCTTGCGGGCTTAC+TGG | 0.258766 | 1.4:+66410094 | MS.gene69891:CDS |
| CAATTGCATTGTTTGCTTGC+GGG | 0.288884 | 1.4:+66410086 | MS.gene69891:CDS |
| GCTATATATCTATTTGCATT+TGG | 0.295526 | 1.4:+66409793 | MS.gene69891:CDS |
| ACAAAAGAATTACCTTTAAC+AGG | 0.300915 | 1.4:-66409704 | None:intergenic |
| TCGTGCTCACCGTTGTTTAT+GGG | 0.323009 | 1.4:+66409887 | MS.gene69891:CDS |
| ATACAGCAGTGGAAGATAAA+AGG | 0.326151 | 1.4:-66410260 | None:intergenic |
| CAGGCATGGGAGTGCACTCC+TGG | 0.335049 | 1.4:+66409519 | MS.gene69891:intron |
| GTTTCTGGAAGTGAGCTTGC+TGG | 0.348925 | 1.4:+66409593 | MS.gene69891:CDS |
| GAAGATTCTTCTTCTTCTAC+TGG | 0.367957 | 1.4:+66408555 | MS.gene69891:CDS |
| TTTCGTATTATGCTTCTCTT+TGG | 0.381366 | 1.4:+66408736 | MS.gene69891:CDS |
| GAAGCATTGACACGAACTTT+TGG | 0.389803 | 1.4:+66409651 | MS.gene69891:CDS |
| GGTATATCCGGTATCATTGT+TGG | 0.395818 | 1.4:+66409672 | MS.gene69891:CDS |
| TCGCTTGAAGTGGAACTTGT+GGG | 0.460605 | 1.4:+66409852 | MS.gene69891:CDS |
| TAACAAAGGGATTCACCGAT+TGG | 0.465604 | 1.4:+66408583 | MS.gene69891:CDS |
| TACTCTGAAATGAAAGATGC+TGG | 0.469422 | 1.4:+66410447 | MS.gene69891:CDS |
| AACAAAGGGATTCACCGATT+GGG | 0.473818 | 1.4:+66408584 | MS.gene69891:CDS |
| GATCAGTGTCGATGAACAAC+GGG | 0.476434 | 1.4:-66409819 | None:intergenic |
| GGGCTTACTGGAAACGGCGC+TGG | 0.478494 | 1.4:+66410106 | MS.gene69891:CDS |
| GCTTGCGGGCTTACTGGAAA+CGG | 0.488027 | 1.4:+66410100 | MS.gene69891:CDS |
| TTCCATGTTAGCTCTTTCCC+AGG | 0.494192 | 1.4:-66409537 | None:intergenic |
| ATCAAAACCAACAATGATAC+CGG | 0.504747 | 1.4:-66409679 | None:intergenic |
| GCAATTGCATTGTTTGCTTG+CGG | 0.512576 | 1.4:+66410085 | MS.gene69891:CDS |
| CTCGCTTGAAGTGGAACTTG+TGG | 0.521442 | 1.4:+66409851 | MS.gene69891:CDS |
| TATATATCTATTTGCATTTG+GGG | 0.524806 | 1.4:+66409795 | MS.gene69891:CDS |
| TTGTTCATCGACACTGATCA+TGG | 0.535592 | 1.4:+66409823 | MS.gene69891:CDS |
| CAACGGTGAGCACGAGCTTG+TGG | 0.536256 | 1.4:-66409879 | None:intergenic |
| CTCCTGGGAAAGAGCTAACA+TGG | 0.539196 | 1.4:+66409535 | MS.gene69891:CDS |
| ATCATTCTAGGTGGAGAGAA+AGG | 0.546944 | 1.4:+66409926 | MS.gene69891:CDS |
| ATGGTACTCCTCGCTTGAAG+TGG | 0.567386 | 1.4:+66409842 | MS.gene69891:CDS |
| CTTCAGGGAAATAATGCAAG+TGG | 0.588641 | 1.4:+66409624 | MS.gene69891:CDS |
| GTGACACTCGAAAACCCAAT+CGG | 0.591095 | 1.4:-66408598 | None:intergenic |
| AGGTGGAGAGAAAGGTTACC+CGG | 0.604674 | 1.4:+66409934 | MS.gene69891:CDS |
| AGGCATGGGAGTGCACTCCT+GGG | 0.610220 | 1.4:+66409520 | MS.gene69891:intron |
| ATCGGTGCTATCAATAACAA+AGG | 0.618733 | 1.4:+66408533 | MS.gene69891:CDS |
| CATTCCAGAAGAAGTAAACA+AGG | 0.620907 | 1.4:-66409568 | None:intergenic |
| CACAAGTTCCACTTCAAGCG+AGG | 0.621744 | 1.4:-66409850 | None:intergenic |
| TATGATATAAGAGCGACCAT+TGG | 0.623291 | 1.4:-66408712 | None:intergenic |
| TGATCAGTGTCGATGAACAA+CGG | 0.625959 | 1.4:-66409820 | None:intergenic |
| ATAACATACTTGTAAAACGC+AGG | 0.629597 | 1.4:-66410043 | None:intergenic |
| GCAGTGGAAGATAAAAGGCA+TGG | 0.634056 | 1.4:-66410255 | None:intergenic |
| TGTTCATGTATCATTCTAGG+TGG | 0.650713 | 1.4:+66409917 | MS.gene69891:CDS |
| AGAAATGTAATATACAGCAG+TGG | 0.653445 | 1.4:-66410271 | None:intergenic |
| CAATATGAGCCCATAAACAA+CGG | 0.679882 | 1.4:-66409896 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGCTGTTTATCTAAA+TGG | + | chr1.4:66408922-66408941 | MS.gene69891:intron | 20.0% |
| !! | CTATATATCTATTTGCATTT+GGG | + | chr1.4:66409794-66409813 | MS.gene69891:CDS | 20.0% |
| !! | TATATATCTATTTGCATTTG+GGG | + | chr1.4:66409795-66409814 | MS.gene69891:CDS | 20.0% |
| !!! | CTTGTTTCATTTTTATTTCA+AGG | + | chr1.4:66408814-66408833 | MS.gene69891:intron | 20.0% |
| !!! | TAGTTTTGAACTTTATTCTT+TGG | + | chr1.4:66410168-66410187 | MS.gene69891:intron | 20.0% |
| ! | AAGATAGCTTATGAAAATCT+AGG | + | chr1.4:66409086-66409105 | MS.gene69891:intron | 25.0% |
| ! | AATAAGCTGAAAACATCTTA+TGG | - | chr1.4:66409052-66409071 | None:intergenic | 25.0% |
| ! | ACAAAAGAATTACCTTTAAC+AGG | - | chr1.4:66409707-66409726 | None:intergenic | 25.0% |
| ! | ATTGTTCTTCTTTGTATTAC+AGG | + | chr1.4:66410395-66410414 | MS.gene69891:intron | 25.0% |
| ! | GCTATATATCTATTTGCATT+TGG | + | chr1.4:66409793-66409812 | MS.gene69891:CDS | 25.0% |
| ! | TATTGTTCATGTATCATTCT+AGG | + | chr1.4:66409914-66409933 | MS.gene69891:CDS | 25.0% |
| ! | TTAGAGAACATATGTTCTTA+TGG | + | chr1.4:66409257-66409276 | MS.gene69891:intron | 25.0% |
| !! | ATTGAGTTGTATATCTAAAC+AGG | + | chr1.4:66409322-66409341 | MS.gene69891:intron | 25.0% |
| !! | TAGATTTTCATAAGCTATCT+TGG | - | chr1.4:66409087-66409106 | None:intergenic | 25.0% |
| !! | TATCTAAATGGACTTAGTTA+GGG | + | chr1.4:66408934-66408953 | MS.gene69891:intron | 25.0% |
| !! | TTATCTAAATGGACTTAGTT+AGG | + | chr1.4:66408933-66408952 | MS.gene69891:intron | 25.0% |
| !! | TTGAGTTGTATATCTAAACA+GGG | + | chr1.4:66409323-66409342 | MS.gene69891:intron | 25.0% |
| !! | TTTTCTCTTCGTTTTGTATT+TGG | + | chr1.4:66408656-66408675 | MS.gene69891:CDS | 25.0% |
| AAGAAAGAAAGAATGAAACC+TGG | - | chr1.4:66408797-66408816 | None:intergenic | 30.0% | |
| AATCCCTACAATTAACTTAC+CGG | - | chr1.4:66409956-66409975 | None:intergenic | 30.0% | |
| ACTGCTGTATATTACATTTC+TGG | + | chr1.4:66410273-66410292 | MS.gene69891:CDS | 30.0% | |
| AGAAAGAAAGAATGAAACCT+GGG | - | chr1.4:66408796-66408815 | None:intergenic | 30.0% | |
| AGAAATGTAATATACAGCAG+TGG | - | chr1.4:66410274-66410293 | None:intergenic | 30.0% | |
| ATAACATACTTGTAAAACGC+AGG | - | chr1.4:66410046-66410065 | None:intergenic | 30.0% | |
| ATCAAAACCAACAATGATAC+CGG | - | chr1.4:66409682-66409701 | None:intergenic | 30.0% | |
| ATGCAGTATTGTTTGTAGTT+TGG | + | chr1.4:66410361-66410380 | MS.gene69891:intron | 30.0% | |
| ATTTGTTCTGGTGATAATTC+AGG | + | chr1.4:66409500-66409519 | MS.gene69891:intron | 30.0% | |
| TATACAATGACATAAGCATG+AGG | + | chr1.4:66408983-66409002 | MS.gene69891:intron | 30.0% | |
| TTACAATGCGCTTTACTTTA+TGG | + | chr1.4:66410311-66410330 | MS.gene69891:intron | 30.0% | |
| TTTCGTATTATGCTTCTCTT+TGG | + | chr1.4:66408736-66408755 | MS.gene69891:CDS | 30.0% | |
| ! | CTGGTTATGTATGATTAGTT+TGG | + | chr1.4:66409755-66409774 | MS.gene69891:intron | 30.0% |
| ! | TTATATCCTTTTTCTCCCTT+TGG | + | chr1.4:66409473-66409492 | MS.gene69891:intron | 30.0% |
| !! | TCTACTGGAGTTTTAACAAA+GGG | + | chr1.4:66408570-66408589 | MS.gene69891:CDS | 30.0% |
| !! | TTCTACTGGAGTTTTAACAA+AGG | + | chr1.4:66408569-66408588 | MS.gene69891:CDS | 30.0% |
| AAAATCTAGGTAGTCAATCC+CGG | + | chr1.4:66409099-66409118 | MS.gene69891:intron | 35.0% | |
| AACTAGAATAGCAGCAACTA+AGG | - | chr1.4:66409349-66409368 | None:intergenic | 35.0% | |
| AATCATACATAACCAGCACA+AGG | - | chr1.4:66409751-66409770 | None:intergenic | 35.0% | |
| ACAAAGAAGAACAATCAGTC+AGG | - | chr1.4:66410390-66410409 | None:intergenic | 35.0% | |
| ACCAGAACAAATTCAACCAA+AGG | - | chr1.4:66409492-66409511 | None:intergenic | 35.0% | |
| ATACAGCAGTGGAAGATAAA+AGG | - | chr1.4:66410263-66410282 | None:intergenic | 35.0% | |
| ATATTTCATTGTCCTTGTGC+TGG | + | chr1.4:66409736-66409755 | MS.gene69891:intron | 35.0% | |
| ATCCCTACAATTAACTTACC+GGG | - | chr1.4:66409955-66409974 | None:intergenic | 35.0% | |
| ATTCAACCAAAGGGAGAAAA+AGG | - | chr1.4:66409482-66409501 | None:intergenic | 35.0% | |
| CAATATGAGCCCATAAACAA+CGG | - | chr1.4:66409899-66409918 | None:intergenic | 35.0% | |
| CATTCCAGAAGAAGTAAACA+AGG | - | chr1.4:66409571-66409590 | None:intergenic | 35.0% | |
| CCAGAACAAATTCAACCAAA+GGG | - | chr1.4:66409491-66409510 | None:intergenic | 35.0% | |
| CTGTGTTTACTTTATCTCAC+AGG | + | chr1.4:66410206-66410225 | MS.gene69891:intron | 35.0% | |
| GAAGATTCTTCTTCTTCTAC+TGG | + | chr1.4:66408555-66408574 | MS.gene69891:CDS | 35.0% | |
| GTTCTTCTTTGTATTACAGG+AGG | + | chr1.4:66410398-66410417 | MS.gene69891:intron | 35.0% | |
| TACCCGGTAAGTTAATTGTA+GGG | + | chr1.4:66409950-66409969 | MS.gene69891:intron | 35.0% | |
| TATGATATAAGAGCGACCAT+TGG | - | chr1.4:66408715-66408734 | None:intergenic | 35.0% | |
| TGTTCATGTATCATTCTAGG+TGG | + | chr1.4:66409917-66409936 | MS.gene69891:CDS | 35.0% | |
| TTACCCGGTAAGTTAATTGT+AGG | + | chr1.4:66409949-66409968 | MS.gene69891:intron | 35.0% | |
| ! | ACACGAACTTTTGGTATATC+CGG | + | chr1.4:66409660-66409679 | MS.gene69891:CDS | 35.0% |
| ! | AGCTTTTACAAACTCACCAA+TGG | + | chr1.4:66408696-66408715 | MS.gene69891:CDS | 35.0% |
| ! | AGTTTGGCGTTTTCTTTGTT+AGG | + | chr1.4:66409771-66409790 | MS.gene69891:intron | 35.0% |
| ! | TTGTCCTTGTTTACTTCTTC+TGG | + | chr1.4:66409564-66409583 | MS.gene69891:CDS | 35.0% |
| !! | ATCGGTGCTATCAATAACAA+AGG | + | chr1.4:66408533-66408552 | MS.gene69891:CDS | 35.0% |
| !! | TACTCTGAAATGAAAGATGC+TGG | + | chr1.4:66410447-66410466 | MS.gene69891:CDS | 35.0% |
| !!! | ATTTCTGGCAGACTTTTTTC+AGG | + | chr1.4:66410288-66410307 | MS.gene69891:CDS | 35.0% |
| !!! | TGGTTTTGATGTCCTGTTAA+AGG | + | chr1.4:66409692-66409711 | MS.gene69891:CDS | 35.0% |
| !!! | TGGTTTTTTCGAATCAGACT+GGG | + | chr1.4:66410467-66410486 | MS.gene69891:CDS | 35.0% |
| !!! | TTGCTGGCTTTTTTACTTCA+GGG | + | chr1.4:66409609-66409628 | MS.gene69891:CDS | 35.0% |
| ACATAAGCATGAGGCTGTTT+GGG | + | chr1.4:66408992-66409011 | MS.gene69891:intron | 40.0% | |
| ATCATTCTAGGTGGAGAGAA+AGG | + | chr1.4:66409926-66409945 | MS.gene69891:CDS | 40.0% | |
| CAATTGCATTGTTTGCTTGC+GGG | + | chr1.4:66410086-66410105 | MS.gene69891:CDS | 40.0% | |
| CTTCAGGGAAATAATGCAAG+TGG | + | chr1.4:66409624-66409643 | MS.gene69891:CDS | 40.0% | |
| GCAATTGCATTGTTTGCTTG+CGG | + | chr1.4:66410085-66410104 | MS.gene69891:CDS | 40.0% | |
| GGTATATCCGGTATCATTGT+TGG | + | chr1.4:66409672-66409691 | MS.gene69891:CDS | 40.0% | |
| TAACAAAGGGATTCACCGAT+TGG | + | chr1.4:66408583-66408602 | MS.gene69891:CDS | 40.0% | |
| TCTGGTGATAATTCAGGCAT+GGG | + | chr1.4:66409506-66409525 | MS.gene69891:intron | 40.0% | |
| TTAGCATTCTCAATCTCGCT+TGG | + | chr1.4:66408763-66408782 | MS.gene69891:intron | 40.0% | |
| TTCTGGTGATAATTCAGGCA+TGG | + | chr1.4:66409505-66409524 | MS.gene69891:intron | 40.0% | |
| TTGTTCATCGACACTGATCA+TGG | + | chr1.4:66409823-66409842 | MS.gene69891:CDS | 40.0% | |
| ! | AACAAAGGGATTCACCGATT+GGG | + | chr1.4:66408584-66408603 | MS.gene69891:CDS | 40.0% |
| ! | ACAGGAGGAAGATTTTCACA+TGG | + | chr1.4:66410413-66410432 | MS.gene69891:intron | 40.0% |
| ! | CCCTTTGGTTGAATTTGTTC+TGG | + | chr1.4:66409488-66409507 | MS.gene69891:intron | 40.0% |
| !! | TGATCAGTGTCGATGAACAA+CGG | - | chr1.4:66409823-66409842 | None:intergenic | 40.0% |
| !! | TTCTTCTGGAATGCTGTTTC+TGG | + | chr1.4:66409578-66409597 | MS.gene69891:CDS | 40.0% |
| !!! | CTGGTTTTTTCGAATCAGAC+TGG | + | chr1.4:66410466-66410485 | MS.gene69891:CDS | 40.0% |
| !!! | CTTGCTGGCTTTTTTACTTC+AGG | + | chr1.4:66409608-66409627 | MS.gene69891:CDS | 40.0% |
| !!! | GAAGCATTGACACGAACTTT+TGG | + | chr1.4:66409651-66409670 | MS.gene69891:CDS | 40.0% |
| AATCCATCCTTTGCAATCCC+CGG | - | chr1.4:66409176-66409195 | None:intergenic | 45.0% | |
| ATAAGCATGAGGCTGTTTGG+GGG | + | chr1.4:66408994-66409013 | MS.gene69891:intron | 45.0% | |
| CATAAGCATGAGGCTGTTTG+GGG | + | chr1.4:66408993-66409012 | MS.gene69891:intron | 45.0% | |
| GACATAAGCATGAGGCTGTT+TGG | + | chr1.4:66408991-66409010 | MS.gene69891:intron | 45.0% | |
| GCAGTGGAAGATAAAAGGCA+TGG | - | chr1.4:66410258-66410277 | None:intergenic | 45.0% | |
| GGACTTAGTTAGGGTCTGTT+TGG | + | chr1.4:66408943-66408962 | MS.gene69891:intron | 45.0% | |
| GTGACACTCGAAAACCCAAT+CGG | - | chr1.4:66408601-66408620 | None:intergenic | 45.0% | |
| TCGCTTGAAGTGGAACTTGT+GGG | + | chr1.4:66409852-66409871 | MS.gene69891:CDS | 45.0% | |
| TCGTGCTCACCGTTGTTTAT+GGG | + | chr1.4:66409887-66409906 | MS.gene69891:CDS | 45.0% | |
| ! | TTCCATGTTAGCTCTTTCCC+AGG | - | chr1.4:66409540-66409559 | None:intergenic | 45.0% |
| !! | ATCCCGTTATCCCACTTTTG+GGG | - | chr1.4:66409136-66409155 | None:intergenic | 45.0% |
| !! | GATCAGTGTCGATGAACAAC+GGG | - | chr1.4:66409822-66409841 | None:intergenic | 45.0% |
| !! | GATCCCGTTATCCCACTTTT+GGG | - | chr1.4:66409137-66409156 | None:intergenic | 45.0% |
| !!! | ATTGGGTTTTCGAGTGTCAC+GGG | + | chr1.4:66408601-66408620 | MS.gene69891:CDS | 45.0% |
| !!! | GATTGGGTTTTCGAGTGTCA+CGG | + | chr1.4:66408600-66408619 | MS.gene69891:CDS | 45.0% |
| !!! | TTTTCGAGTGTCACGGGTTT+TGG | + | chr1.4:66408607-66408626 | MS.gene69891:CDS | 45.0% |
| AGGCTGTTTGGGGGAACTTA+TGG | + | chr1.4:66409003-66409022 | MS.gene69891:intron | 50.0% | |
| AGGTAGTCAATCCCGGATAG+CGG | + | chr1.4:66409106-66409125 | MS.gene69891:intron | 50.0% | |
| AGGTGGAGAGAAAGGTTACC+CGG | + | chr1.4:66409934-66409953 | MS.gene69891:CDS | 50.0% | |
| ATCCCAGTTAGCAGGATCAC+CGG | + | chr1.4:66409154-66409173 | MS.gene69891:intron | 50.0% | |
| ATGGTACTCCTCGCTTGAAG+TGG | + | chr1.4:66409842-66409861 | MS.gene69891:CDS | 50.0% | |
| CACAAGTTCCACTTCAAGCG+AGG | - | chr1.4:66409853-66409872 | None:intergenic | 50.0% | |
| CGACCCCAAAAGTGGGATAA+CGG | + | chr1.4:66409130-66409149 | MS.gene69891:intron | 50.0% | |
| CTCCTGGGAAAGAGCTAACA+TGG | + | chr1.4:66409535-66409554 | MS.gene69891:CDS | 50.0% | |
| CTCGCTTGAAGTGGAACTTG+TGG | + | chr1.4:66409851-66409870 | MS.gene69891:CDS | 50.0% | |
| CTCGTGCTCACCGTTGTTTA+TGG | + | chr1.4:66409886-66409905 | MS.gene69891:CDS | 50.0% | |
| GACCCCAAAAGTGGGATAAC+GGG | + | chr1.4:66409131-66409150 | MS.gene69891:intron | 50.0% | |
| TTGTTTGCTTGCGGGCTTAC+TGG | + | chr1.4:66410094-66410113 | MS.gene69891:CDS | 50.0% | |
| ! | ATAACGGGATCCCAGTTAGC+AGG | + | chr1.4:66409146-66409165 | MS.gene69891:intron | 50.0% |
| ! | GGATCCCGTTATCCCACTTT+TGG | - | chr1.4:66409138-66409157 | None:intergenic | 50.0% |
| ! | GTTTCTGGAAGTGAGCTTGC+TGG | + | chr1.4:66409593-66409612 | MS.gene69891:CDS | 50.0% |
| AACGCAGGTCTTGCTGCAGA+AGG | - | chr1.4:66410031-66410050 | None:intergenic | 55.0% | |
| AGGATCACCGGGGATTGCAA+AGG | + | chr1.4:66409166-66409185 | MS.gene69891:intron | 55.0% | |
| ATAGCGGTCGACCCCAAAAG+TGG | + | chr1.4:66409122-66409141 | MS.gene69891:intron | 55.0% | |
| GCTTGCGGGCTTACTGGAAA+CGG | + | chr1.4:66410100-66410119 | MS.gene69891:CDS | 55.0% | |
| TAGCGGTCGACCCCAAAAGT+GGG | + | chr1.4:66409123-66409142 | MS.gene69891:intron | 55.0% | |
| TCACCGGGGATTGCAAAGGA+TGG | + | chr1.4:66409170-66409189 | MS.gene69891:intron | 55.0% | |
| TCCCAGTTAGCAGGATCACC+GGG | + | chr1.4:66409155-66409174 | MS.gene69891:intron | 55.0% | |
| !!! | ACGGCGCTGGTTTTGGTTTC+TGG | + | chr1.4:66410119-66410138 | MS.gene69891:CDS | 55.0% |
| !!! | ACTGGAAACGGCGCTGGTTT+TGG | + | chr1.4:66410112-66410131 | MS.gene69891:CDS | 55.0% |
| !!! | TCTCGCTTGGTGCTTTTCCC+AGG | + | chr1.4:66408776-66408795 | MS.gene69891:intron | 55.0% |
| !!! | TTTTGGGGTCGACCGCTATC+CGG | - | chr1.4:66409121-66409140 | None:intergenic | 55.0% |
| CAACGGTGAGCACGAGCTTG+TGG | - | chr1.4:66409882-66409901 | None:intergenic | 60.0% | |
| CCCAGTTAGCAGGATCACCG+GGG | + | chr1.4:66409156-66409175 | MS.gene69891:intron | 60.0% | |
| CCCCGGTGATCCTGCTAACT+GGG | - | chr1.4:66409159-66409178 | None:intergenic | 60.0% | |
| TCCCCGGTGATCCTGCTAAC+TGG | - | chr1.4:66409160-66409179 | None:intergenic | 60.0% | |
| ! | AGGCATGGGAGTGCACTCCT+GGG | + | chr1.4:66409520-66409539 | MS.gene69891:intron | 60.0% |
| ! | TTTGGGGTCGACCGCTATCC+GGG | - | chr1.4:66409120-66409139 | None:intergenic | 60.0% |
| GGGCTTACTGGAAACGGCGC+TGG | + | chr1.4:66410106-66410125 | MS.gene69891:CDS | 65.0% | |
| ! | CAGGCATGGGAGTGCACTCC+TGG | + | chr1.4:66409519-66409538 | MS.gene69891:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66408522 | 66410494 | 66408522 | ID=MS.gene69891 |
| chr1.4 | mRNA | 66408522 | 66410494 | 66408522 | ID=MS.gene69891.t1;Parent=MS.gene69891 |
| chr1.4 | exon | 66408522 | 66408761 | 66408522 | ID=MS.gene69891.t1.exon1;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66408522 | 66408761 | 66408522 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| chr1.4 | exon | 66409522 | 66409713 | 66409522 | ID=MS.gene69891.t1.exon2;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66409522 | 66409713 | 66409522 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| chr1.4 | exon | 66409793 | 66409955 | 66409793 | ID=MS.gene69891.t1.exon3;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66409793 | 66409955 | 66409793 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| chr1.4 | exon | 66410038 | 66410140 | 66410038 | ID=MS.gene69891.t1.exon4;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66410038 | 66410140 | 66410038 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| chr1.4 | exon | 66410228 | 66410309 | 66410228 | ID=MS.gene69891.t1.exon5;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66410228 | 66410309 | 66410228 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| chr1.4 | exon | 66410417 | 66410494 | 66410417 | ID=MS.gene69891.t1.exon6;Parent=MS.gene69891.t1 |
| chr1.4 | CDS | 66410417 | 66410494 | 66410417 | ID=cds.MS.gene69891.t1;Parent=MS.gene69891.t1 |
| Gene Sequence |
| Protein sequence |
