Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71612.t1 | KEH44019.1 | 94.8 | 581 | 29 | 1 | 1 | 580 | 1 | 581 | 0.00E+00 | 1134.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71612.t1 | Q84WT5 | 45.9 | 580 | 278 | 8 | 9 | 574 | 6 | 563 | 5.6e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71612.t1 | A0A072VPS6 | 94.8 | 581 | 29 | 1 | 1 | 580 | 1 | 581 | 0.0e+00 | 1134.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene71612 | -0.812313 | 4.52E-51 | -1.69E-46 |
| MS.gene049285 | MS.gene71612 | -0.803853 | 2.86E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene71612 | -0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene049611 | MS.gene71612 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene050163 | MS.gene71612 | -0.807252 | 5.53E-50 | -1.69E-46 |
| MS.gene050165 | MS.gene71612 | -0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene71612 | -0.856513 | 3.06E-62 | -1.69E-46 |
| MS.gene050504 | MS.gene71612 | -0.825856 | 3.73E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene71612 | -0.809811 | 1.57E-50 | -1.69E-46 |
| MS.gene050612 | MS.gene71612 | -0.820818 | 5.61E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene71612 | -0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene71612 | -0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene71612 | 0.825382 | 4.83E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene71612 | -0.825401 | 4.78E-54 | -1.69E-46 |
| MS.gene051973 | MS.gene71612 | 0.800848 | 1.19E-48 | -1.69E-46 |
| MS.gene052129 | MS.gene71612 | 0.855805 | 4.93E-62 | -1.69E-46 |
| MS.gene052870 | MS.gene71612 | -0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene71612 | -0.82636 | 2.83E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene71612 | -0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene71612 | -0.808005 | 3.83E-50 | -1.69E-46 |
| MS.gene053776 | MS.gene71612 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene71612 | -0.806089 | 9.74E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene71612 | 0.821969 | 3.04E-53 | -1.69E-46 |
| MS.gene05470 | MS.gene71612 | -0.812758 | 3.61E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene71612 | -0.813795 | 2.14E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene71612 | -0.831333 | 1.77E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene71612 | -0.823738 | 1.18E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene71612 | -0.823215 | 1.56E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene71612 | -0.803905 | 2.79E-49 | -1.69E-46 |
| MS.gene056678 | MS.gene71612 | 0.80941 | 1.92E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene71612 | 0.817538 | 3.13E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene71612 | -0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene71612 | 0.840468 | 8.54E-58 | -1.69E-46 |
| MS.gene058158 | MS.gene71612 | 0.803005 | 4.28E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene71612 | 0.818746 | 1.67E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene71612 | -0.804952 | 1.69E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene71612 | -0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene059023 | MS.gene71612 | -0.822551 | 2.23E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene71612 | -0.813906 | 2.02E-51 | -1.69E-46 |
| MS.gene05926 | MS.gene71612 | 0.827257 | 1.73E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene71612 | -0.81417 | 1.77E-51 | -1.69E-46 |
| MS.gene059699 | MS.gene71612 | 0.801951 | 7.06E-49 | -1.69E-46 |
| MS.gene060405 | MS.gene71612 | 0.834371 | 3.11E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene71612 | -0.816609 | 5.06E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene71612 | -0.804206 | 2.41E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene71612 | -0.802167 | 6.38E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71612.t1 | MTR_1g106200 | 94.836 | 581 | 29 | 1 | 1 | 580 | 1 | 581 | 0.0 | 1154 |
| MS.gene71612.t1 | MTR_1g106200 | 89.673 | 581 | 26 | 2 | 1 | 580 | 7 | 554 | 0.0 | 1074 |
| MS.gene71612.t1 | MTR_1g106910 | 75.345 | 580 | 143 | 0 | 1 | 580 | 1 | 580 | 0.0 | 925 |
| MS.gene71612.t1 | MTR_1g106790 | 73.793 | 580 | 151 | 1 | 1 | 580 | 2 | 580 | 0.0 | 907 |
| MS.gene71612.t1 | MTR_1g106770 | 73.945 | 545 | 142 | 0 | 36 | 580 | 2 | 546 | 0.0 | 878 |
| MS.gene71612.t1 | MTR_7g024420 | 50.000 | 532 | 262 | 3 | 22 | 553 | 13 | 540 | 0.0 | 551 |
| MS.gene71612.t1 | MTR_4g074070 | 47.786 | 542 | 279 | 3 | 12 | 553 | 3 | 540 | 0.0 | 538 |
| MS.gene71612.t1 | MTR_5g049180 | 47.124 | 539 | 281 | 3 | 18 | 556 | 9 | 543 | 0.0 | 530 |
| MS.gene71612.t1 | MTR_3g117800 | 36.268 | 568 | 320 | 9 | 18 | 578 | 1 | 533 | 2.60e-114 | 351 |
| MS.gene71612.t1 | MTR_3g117800 | 39.540 | 478 | 272 | 7 | 108 | 578 | 15 | 482 | 1.39e-111 | 342 |
| MS.gene71612.t1 | MTR_3g117800 | 40.225 | 445 | 252 | 5 | 139 | 578 | 17 | 452 | 4.21e-109 | 335 |
| MS.gene71612.t1 | MTR_4g121520 | 55.639 | 266 | 65 | 3 | 315 | 580 | 222 | 434 | 4.70e-87 | 277 |
| MS.gene71612.t1 | MTR_3g103610 | 29.873 | 472 | 295 | 12 | 44 | 489 | 192 | 653 | 2.90e-61 | 216 |
| MS.gene71612.t1 | MTR_1g017020 | 28.169 | 568 | 358 | 15 | 44 | 578 | 353 | 903 | 1.78e-58 | 210 |
| MS.gene71612.t1 | MTR_1463s0010 | 40.310 | 129 | 31 | 4 | 381 | 509 | 1 | 83 | 1.08e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71612.t1 | AT4G33840 | 50.738 | 542 | 260 | 5 | 27 | 565 | 21 | 558 | 0.0 | 561 |
| MS.gene71612.t1 | AT4G33860 | 50.095 | 529 | 255 | 6 | 29 | 553 | 23 | 546 | 1.60e-179 | 519 |
| MS.gene71612.t1 | AT4G33830 | 48.519 | 540 | 270 | 6 | 29 | 565 | 24 | 558 | 2.12e-179 | 519 |
| MS.gene71612.t1 | AT4G33820 | 45.862 | 580 | 278 | 8 | 9 | 574 | 6 | 563 | 5.29e-175 | 508 |
| MS.gene71612.t1 | AT4G33810 | 45.486 | 576 | 281 | 8 | 8 | 574 | 11 | 562 | 4.30e-167 | 487 |
| MS.gene71612.t1 | AT4G33810 | 45.486 | 576 | 281 | 8 | 8 | 574 | 11 | 562 | 4.30e-167 | 487 |
| MS.gene71612.t1 | AT4G33810 | 45.486 | 576 | 281 | 8 | 8 | 574 | 11 | 562 | 4.30e-167 | 487 |
| MS.gene71612.t1 | AT4G33810 | 46.961 | 543 | 259 | 7 | 40 | 574 | 1 | 522 | 3.04e-165 | 481 |
| MS.gene71612.t1 | AT4G33810 | 46.961 | 543 | 259 | 7 | 40 | 574 | 1 | 522 | 3.04e-165 | 481 |
| MS.gene71612.t1 | AT2G14690 | 44.646 | 551 | 257 | 9 | 31 | 566 | 32 | 549 | 6.55e-161 | 471 |
| MS.gene71612.t1 | AT4G38650 | 37.669 | 592 | 325 | 13 | 1 | 579 | 1 | 561 | 2.43e-126 | 383 |
| MS.gene71612.t1 | AT4G38300 | 43.629 | 259 | 132 | 4 | 201 | 459 | 10 | 254 | 2.85e-71 | 230 |
| MS.gene71612.t1 | AT1G10050 | 28.693 | 589 | 362 | 16 | 32 | 578 | 523 | 1095 | 2.50e-60 | 217 |
| MS.gene71612.t1 | AT1G10050 | 28.693 | 589 | 362 | 16 | 32 | 578 | 491 | 1063 | 2.89e-60 | 216 |
| MS.gene71612.t1 | AT1G10050 | 28.693 | 589 | 362 | 16 | 32 | 578 | 491 | 1063 | 2.89e-60 | 216 |
| MS.gene71612.t1 | AT1G58370 | 30.064 | 469 | 293 | 12 | 48 | 489 | 366 | 826 | 1.04e-59 | 214 |
| MS.gene71612.t1 | AT1G58370 | 30.064 | 469 | 293 | 12 | 48 | 489 | 394 | 854 | 1.88e-59 | 213 |
| MS.gene71612.t1 | AT4G08160 | 28.860 | 544 | 340 | 17 | 48 | 554 | 194 | 727 | 4.94e-57 | 204 |
| MS.gene71612.t1 | AT4G08160 | 30.085 | 472 | 287 | 14 | 48 | 484 | 194 | 657 | 3.19e-56 | 201 |
Find 107 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAACCATTTACTAAAA+AGG | 0.196675 | 1.4:-82180373 | MS.gene71612:CDS |
| ATAGAGGGGTGGACAATATT+TGG | 0.237614 | 1.4:-82181218 | MS.gene71612:CDS |
| TTAGAATTTGCTAAAGATAA+TGG | 0.238249 | 1.4:-82179752 | MS.gene71612:CDS |
| GTAATATTGGATTTCCAATA+TGG | 0.244796 | 1.4:-82179274 | MS.gene71612:CDS |
| GATAAATACTTAACCCATTC+AGG | 0.250247 | 1.4:+82179680 | None:intergenic |
| CTGGCTTCTGTGAGCCATAT+TGG | 0.278897 | 1.4:+82179260 | None:intergenic |
| CGCGGCTTTGCGCAATTCAT+CGG | 0.294861 | 1.4:+82179655 | None:intergenic |
| TATCCTCATAAAAGTGAAAA+TGG | 0.296065 | 1.4:+82179558 | None:intergenic |
| GAATTGAATCTGTTGTTAAA+AGG | 0.302891 | 1.4:-82179625 | MS.gene71612:CDS |
| CTTGTCCAGTTGGAGTAGTT+TGG | 0.315012 | 1.4:+82178973 | None:intergenic |
| CTATTTCCATCATTTGATAT+AGG | 0.321865 | 1.4:+82181176 | None:intergenic |
| GCAAATTCTAACAATGCATC+TGG | 0.322216 | 1.4:+82179764 | None:intergenic |
| ATAATCCAAGTGTGGAACTA+TGG | 0.323555 | 1.4:-82180410 | MS.gene71612:CDS |
| CTATCTGCTTTGGCTGTATA+AGG | 0.325055 | 1.4:+82178915 | None:intergenic |
| TTGGCTGGCCACTTGCAAAA+TGG | 0.329470 | 1.4:+82179333 | None:intergenic |
| AGGGCTAGGCGTTCATTCTT+TGG | 0.333367 | 1.4:-82181463 | MS.gene71612:CDS |
| AGGAATCAATATACCTGATT+TGG | 0.339675 | 1.4:+82179224 | None:intergenic |
| GGATGTTGGTCTCTTCTAAA+AGG | 0.342664 | 1.4:-82180852 | MS.gene71612:CDS |
| ACAAAGGCAGATTTCCCATT+TGG | 0.372177 | 1.4:-82179926 | MS.gene71612:CDS |
| CAAGGGATTATAATGTTTGC+TGG | 0.384553 | 1.4:-82179044 | MS.gene71612:CDS |
| GACCTCATGTAAGCAAGATT+TGG | 0.386824 | 1.4:+82179314 | None:intergenic |
| ATGGCTCACAGAAGCCAGTT+TGG | 0.392362 | 1.4:-82179255 | MS.gene71612:CDS |
| ATCTTGACACAAACCATTCC+TGG | 0.399462 | 1.4:+82179864 | None:intergenic |
| AATTCCTCTACTATCTGCTT+TGG | 0.405314 | 1.4:+82178905 | None:intergenic |
| TATAGTACAGAGAAAATTCC+AGG | 0.407018 | 1.4:-82179806 | MS.gene71612:CDS |
| TCTGTTGTATTTAAAACAAA+TGG | 0.407940 | 1.4:-82180915 | MS.gene71612:CDS |
| GCGGCTTTGCGCAATTCATC+GGG | 0.408559 | 1.4:+82179656 | None:intergenic |
| ATTATAATCCCTTGAACTGC+TGG | 0.416207 | 1.4:+82179053 | None:intergenic |
| TCTTTCCTTCTACTTATCTC+AGG | 0.416467 | 1.4:-82181565 | MS.gene71612:intron |
| GGACAATTTGATTCTTGAAT+GGG | 0.428361 | 1.4:-82178946 | MS.gene71612:CDS |
| AATTTCCAAACTACTCCAAC+TGG | 0.432243 | 1.4:-82178978 | MS.gene71612:CDS |
| GAACCTCAGAGAGCACAATA+TGG | 0.433972 | 1.4:-82181278 | MS.gene71612:CDS |
| CTTGAGGAGATTATGCAATC+TGG | 0.434202 | 1.4:-82179395 | MS.gene71612:CDS |
| TATAATACTATTGAATATAG+TGG | 0.435039 | 1.4:-82179455 | MS.gene71612:CDS |
| TGGACAATTTGATTCTTGAA+TGG | 0.435532 | 1.4:-82178947 | MS.gene71612:CDS |
| AGAAACCTGAGATAAGTAGA+AGG | 0.437755 | 1.4:+82181560 | None:intergenic |
| CAAAAGGTTCAGCTAGAGAA+AGG | 0.450854 | 1.4:-82181107 | MS.gene71612:CDS |
| TATTCTCATCCAGCAGTTCA+AGG | 0.451221 | 1.4:-82179062 | MS.gene71612:CDS |
| TTTGGATCCTCAGCCAAATC+AGG | 0.451900 | 1.4:-82179237 | MS.gene71612:intron |
| TTGATTCTTGAATGGGGAAG+TGG | 0.457488 | 1.4:-82178939 | MS.gene71612:CDS |
| TTTCATTTGCATTACTTACA+TGG | 0.462597 | 1.4:+82179984 | None:intergenic |
| TGAATTTAAGTGTCAGGAAA+GGG | 0.466143 | 1.4:-82178809 | MS.gene71612:CDS |
| ATCAAGACAACAACATTGAA+AGG | 0.467422 | 1.4:-82180338 | MS.gene71612:CDS |
| AGGATTTGATCACAATATAG+AGG | 0.474653 | 1.4:-82181234 | MS.gene71612:CDS |
| ATTTGGAAATGGAACAATTG+AGG | 0.474681 | 1.4:-82181201 | MS.gene71612:CDS |
| ATTTGGCTGAGGATCCAAAC+TGG | 0.478667 | 1.4:+82179241 | None:intergenic |
| TCCTTCACTCAGCTGAAGCC+AGG | 0.479525 | 1.4:+82180950 | None:intergenic |
| GCAGATTTCCCATTTGGATG+TGG | 0.480363 | 1.4:-82179920 | MS.gene71612:CDS |
| TGGTTCATCCCACATCCAAA+TGG | 0.480525 | 1.4:+82179911 | None:intergenic |
| CAGATTTCCCATTTGGATGT+GGG | 0.482548 | 1.4:-82179919 | MS.gene71612:CDS |
| GGGTGGACAATATTTGGAAA+TGG | 0.490634 | 1.4:-82181212 | MS.gene71612:CDS |
| TAATCCAAGTGTGGAACTAT+GGG | 0.498083 | 1.4:-82180409 | MS.gene71612:CDS |
| TACTCCAACTGGACAAGTTG+TGG | 0.508753 | 1.4:-82178967 | MS.gene71612:CDS |
| ACCTCGAAAAGAATCTCAGC+CGG | 0.511024 | 1.4:+82180804 | None:intergenic |
| CTGTTGAAACCAGCTTGTGC+TGG | 0.513392 | 1.4:+82179020 | None:intergenic |
| TTGAATTTAAGTGTCAGGAA+AGG | 0.514898 | 1.4:-82178810 | MS.gene71612:CDS |
| AATCTTGCTTACATGAGGTC+AGG | 0.523790 | 1.4:-82179311 | MS.gene71612:CDS |
| GGTTCATCCCACATCCAAAT+GGG | 0.524124 | 1.4:+82179912 | None:intergenic |
| AAAATGGCCTTGCAATCCTA+TGG | 0.528513 | 1.4:+82179349 | None:intergenic |
| GAGGAACCTATATCAAATGA+TGG | 0.531221 | 1.4:-82181182 | MS.gene71612:CDS |
| GTAGATATTTCATTACATCA+TGG | 0.536564 | 1.4:-82178882 | MS.gene71612:CDS |
| TTTGCTGGTCCAGCACAAGC+TGG | 0.541008 | 1.4:-82179029 | MS.gene71612:CDS |
| ACTGAAATGTTATTTGCCAT+AGG | 0.544070 | 1.4:-82179365 | MS.gene71612:CDS |
| TCAACCCATAGTTCCACACT+TGG | 0.551818 | 1.4:+82180405 | None:intergenic |
| CTTTGAAGAGGTACTAAGAG+AGG | 0.552406 | 1.4:-82179087 | MS.gene71612:CDS |
| GCCTGGCTTCAGCTGAGTGA+AGG | 0.552848 | 1.4:-82180951 | MS.gene71612:CDS |
| TCAAGACAACAACATTGAAA+GGG | 0.555279 | 1.4:-82180337 | MS.gene71612:intron |
| CCTCGAAAAGAATCTCAGCC+GGG | 0.555600 | 1.4:+82180805 | None:intergenic |
| TTATTTGCCATAGGATTGCA+AGG | 0.558146 | 1.4:-82179356 | MS.gene71612:CDS |
| GATAATGGAATTTCTGTCAG+AGG | 0.562216 | 1.4:-82179737 | MS.gene71612:CDS |
| GGATTTGATCACAATATAGA+GGG | 0.563100 | 1.4:-82181233 | MS.gene71612:CDS |
| CAAACATTGACTACCAGGAA+TGG | 0.563798 | 1.4:-82179877 | MS.gene71612:CDS |
| TGAGATAAGTAGAAGGAAAG+AGG | 0.565953 | 1.4:+82181567 | None:intergenic |
| TGATTCTTGAATGGGGAAGT+GGG | 0.567685 | 1.4:-82178938 | MS.gene71612:CDS |
| TCATGTAAGCAAGATTTGGC+TGG | 0.570296 | 1.4:+82179318 | None:intergenic |
| ACAAAGGAGAATTGATAGCA+TGG | 0.571786 | 1.4:-82179601 | MS.gene71612:CDS |
| GGAGGCATTATATTAAACTC+AGG | 0.572481 | 1.4:-82181254 | MS.gene71612:CDS |
| ATTCTCATCCAGCAGTTCAA+GGG | 0.573091 | 1.4:-82179061 | MS.gene71612:CDS |
| CTTTCACTAATGAGATGAAG+TGG | 0.573436 | 1.4:-82179829 | MS.gene71612:CDS |
| CAATATACCTGATTTGGCTG+AGG | 0.579698 | 1.4:+82179230 | None:intergenic |
| TTGTCCACAACTTGTCCAGT+TGG | 0.589012 | 1.4:+82178963 | None:intergenic |
| CAATGTTTGTGAGAATATGA+TGG | 0.591061 | 1.4:+82179891 | None:intergenic |
| TCTGTTGTTAAAAGGTACAA+AGG | 0.592676 | 1.4:-82179617 | MS.gene71612:CDS |
| CCTCCATATTGTGCTCTCTG+AGG | 0.597382 | 1.4:+82181275 | None:intergenic |
| TCTCACAAACATTGACTACC+AGG | 0.597515 | 1.4:-82179882 | MS.gene71612:CDS |
| CAAATTCTAACAATGCATCT+GGG | 0.597795 | 1.4:+82179765 | None:intergenic |
| AGTCGCAAACTTCTCGAGCC+CGG | 0.598167 | 1.4:-82180823 | MS.gene71612:CDS |
| CAAAGGAGAATTGATAGCAT+GGG | 0.602744 | 1.4:-82179600 | MS.gene71612:CDS |
| TAATGCAAATGAAACAGCAT+CGG | 0.605090 | 1.4:-82179975 | MS.gene71612:CDS |
| CAGAGAGCACAATATGGAGG+AGG | 0.606885 | 1.4:-82181272 | MS.gene71612:CDS |
| GATAAGTAGAAGGAAAGAGG+TGG | 0.610537 | 1.4:+82181570 | None:intergenic |
| ATCCATGCTTTGCTATCACA+TGG | 0.619431 | 1.4:+82180871 | None:intergenic |
| AGTTGTGATAACACAAACAA+AGG | 0.625979 | 1.4:-82179942 | MS.gene71612:CDS |
| TGTTGGTCTCTTCTAAAAGG+TGG | 0.626713 | 1.4:-82180849 | MS.gene71612:CDS |
| AGCCAAATCTTGCTTACATG+AGG | 0.629685 | 1.4:-82179316 | MS.gene71612:CDS |
| GCAAATGAAACAGCATCGGA+AGG | 0.632167 | 1.4:-82179971 | MS.gene71612:CDS |
| GACAATTTGATTCTTGAATG+GGG | 0.637575 | 1.4:-82178945 | MS.gene71612:CDS |
| GGCCATGTGATAGCAAAGCA+TGG | 0.645129 | 1.4:-82180873 | MS.gene71612:CDS |
| ACAGCCAAAGCAGATAGTAG+AGG | 0.647030 | 1.4:-82178909 | MS.gene71612:CDS |
| GCAGGCAGAGTACTTTGAAG+AGG | 0.651922 | 1.4:-82179099 | MS.gene71612:intron |
| TTGATCACAATATAGAGGGG+TGG | 0.655644 | 1.4:-82181229 | MS.gene71612:CDS |
| GCAGAGCAATAATCCAAGTG+TGG | 0.666181 | 1.4:-82180418 | MS.gene71612:intron |
| TGATAGCAAAGCATGGATGT+TGG | 0.670562 | 1.4:-82180866 | MS.gene71612:CDS |
| CCTCAGAGAGCACAATATGG+AGG | 0.677720 | 1.4:-82181275 | MS.gene71612:CDS |
| AATGGAAGTGAACTTGTGCA+TGG | 0.692631 | 1.4:-82180897 | MS.gene71612:CDS |
| GATTTGATCACAATATAGAG+GGG | 0.720231 | 1.4:-82181232 | MS.gene71612:CDS |
| GGAAGTGAACTTGTGCATGG+TGG | 0.735930 | 1.4:-82180894 | MS.gene71612:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACGATTATTAATTTAATA+TGG | - | chr1.4:82178984-82179003 | MS.gene71612:CDS | 10.0% |
| !!! | ATATTTTGTTACAATTTTTT+TGG | + | chr1.4:82180288-82180307 | None:intergenic | 10.0% |
| !! | AAGAAATACTAAAATTAGAA+CGG | - | chr1.4:82180175-82180194 | MS.gene71612:intron | 15.0% |
| !! | GTTTATATTGCTTAAATTAA+TGG | + | chr1.4:82179039-82179058 | None:intergenic | 15.0% |
| !! | TATAATACTATTGAATATAG+TGG | - | chr1.4:82180925-82180944 | MS.gene71612:CDS | 15.0% |
| !!! | AAATTTTTACATGTACTATT+TGG | - | chr1.4:82179830-82179849 | MS.gene71612:CDS | 15.0% |
| !!! | ATTTCTTTTGAGTATAAAAT+TGG | + | chr1.4:82180162-82180181 | None:intergenic | 15.0% |
| !! | AAAAATTGAATTTAAGTGTC+AGG | - | chr1.4:82181565-82181584 | MS.gene71612:intron | 20.0% |
| !! | ATTTATAGGGACTAAATATA+GGG | - | chr1.4:82179689-82179708 | MS.gene71612:CDS | 20.0% |
| !!! | AATTCAATTTTTTGGAGTAT+TGG | + | chr1.4:82181557-82181576 | None:intergenic | 20.0% |
| !!! | AGTCCTTATTTTTCATTTAT+AGG | - | chr1.4:82179675-82179694 | MS.gene71612:CDS | 20.0% |
| !!! | ATTAGATAGTTTTTCACAAA+AGG | - | chr1.4:82179257-82179276 | MS.gene71612:CDS | 20.0% |
| !!! | GACACTTAAATTCAATTTTT+TGG | + | chr1.4:82181565-82181584 | None:intergenic | 20.0% |
| !!! | GGGATAAATATATTTTCAAT+CGG | + | chr1.4:82179771-82179790 | None:intergenic | 20.0% |
| !!! | GTCCTTATTTTTCATTTATA+GGG | - | chr1.4:82179676-82179695 | MS.gene71612:CDS | 20.0% |
| !!! | TCTGTTGTATTTAAAACAAA+TGG | - | chr1.4:82179465-82179484 | MS.gene71612:CDS | 20.0% |
| !!! | TTAGAATTTGCTAAAGATAA+TGG | - | chr1.4:82180628-82180647 | MS.gene71612:intron | 20.0% |
| !!! | TTCATAAACAATGTTGTTTT+TGG | + | chr1.4:82180901-82180920 | None:intergenic | 20.0% |
| !!! | TTCTTATTTGTTATATATGC+AGG | - | chr1.4:82181263-82181282 | MS.gene71612:CDS | 20.0% |
| ! | AACCATTTACTAAAAAGGAA+TGG | - | chr1.4:82180012-82180031 | MS.gene71612:intron | 25.0% |
| ! | ATAAGAATTCAGAAACAACA+AGG | + | chr1.4:82179880-82179899 | None:intergenic | 25.0% |
| ! | ATGAAAAATATCAACCTGAA+TGG | - | chr1.4:82180686-82180705 | MS.gene71612:intron | 25.0% |
| ! | CATACTTTGTACAAATAACA+TGG | - | chr1.4:82180259-82180278 | MS.gene71612:intron | 25.0% |
| ! | CATTTATAGGGACTAAATAT+AGG | - | chr1.4:82179688-82179707 | MS.gene71612:CDS | 25.0% |
| ! | CTATTTCCATCATTTGATAT+AGG | + | chr1.4:82179207-82179226 | None:intergenic | 25.0% |
| ! | GAATTGAATCTGTTGTTAAA+AGG | - | chr1.4:82180755-82180774 | MS.gene71612:intron | 25.0% |
| ! | GTAATATTGGATTTCCAATA+TGG | - | chr1.4:82181106-82181125 | MS.gene71612:CDS | 25.0% |
| ! | GTAGATATTTCATTACATCA+TGG | - | chr1.4:82181498-82181517 | MS.gene71612:intron | 25.0% |
| ! | GTCCCTATAAATGAAAAATA+AGG | + | chr1.4:82179681-82179700 | None:intergenic | 25.0% |
| ! | TATCCTCATAAAAGTGAAAA+TGG | + | chr1.4:82180825-82180844 | None:intergenic | 25.0% |
| ! | TGAAAAATATCAACCTGAAT+GGG | - | chr1.4:82180687-82180706 | MS.gene71612:intron | 25.0% |
| ! | TTTCATTTGCATTACTTACA+TGG | + | chr1.4:82180399-82180418 | None:intergenic | 25.0% |
| !! | AGTCTTGATTTATAACTTGT+AGG | - | chr1.4:82180351-82180370 | MS.gene71612:CDS | 25.0% |
| !! | TCCTTTTTACAAATCAATAC+TGG | + | chr1.4:82180322-82180341 | None:intergenic | 25.0% |
| !!! | ACCAGTATTGATTTGTAAAA+AGG | - | chr1.4:82180318-82180337 | MS.gene71612:intron | 25.0% |
| !!! | AGATTCAATTCTTTTTTTCG+CGG | + | chr1.4:82180746-82180765 | None:intergenic | 25.0% |
| !!! | CTAGATTTTCTTGGTAATAT+TGG | - | chr1.4:82181093-82181112 | MS.gene71612:CDS | 25.0% |
| !!! | GGATTGATATACATTTTTTC+AGG | - | chr1.4:82179294-82179313 | MS.gene71612:CDS | 25.0% |
| !!! | TAAAATTGGTTTGCTTACTA+TGG | + | chr1.4:82180148-82180167 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTTTGAGATAGTT+GGG | + | chr1.4:82180970-82180989 | None:intergenic | 25.0% |
| !!! | TCATACACTGTTTTATTTCA+AGG | + | chr1.4:82179080-82179099 | None:intergenic | 25.0% |
| !!! | TGATTATTTTGCTACTATTG+AGG | - | chr1.4:82178944-82178963 | MS.gene71612:CDS | 25.0% |
| AGGAATCAATATACCTGATT+TGG | + | chr1.4:82181159-82181178 | None:intergenic | 30.0% | |
| AGGATTTGATCACAATATAG+AGG | - | chr1.4:82179146-82179165 | MS.gene71612:intron | 30.0% | |
| AGTTGTGATAACACAAACAA+AGG | - | chr1.4:82180438-82180457 | MS.gene71612:intron | 30.0% | |
| ATCAAGACAACAACATTGAA+AGG | - | chr1.4:82180042-82180061 | MS.gene71612:intron | 30.0% | |
| ATCTTCACAACATATATGCA+GGG | - | chr1.4:82178898-82178917 | MS.gene71612:CDS | 30.0% | |
| ATTTGGAAATGGAACAATTG+AGG | - | chr1.4:82179179-82179198 | MS.gene71612:intron | 30.0% | |
| CAAATTCTAACAATGCATCT+GGG | + | chr1.4:82180618-82180637 | None:intergenic | 30.0% | |
| CAACTATCTCAAAAAACTTG+AGG | - | chr1.4:82180969-82180988 | MS.gene71612:intron | 30.0% | |
| CAATGTTTGTGAGAATATGA+TGG | + | chr1.4:82180492-82180511 | None:intergenic | 30.0% | |
| CTTGCAACCATTTACTAAAA+AGG | - | chr1.4:82180007-82180026 | MS.gene71612:CDS | 30.0% | |
| CTTGCTTCTATAAAAGAGAA+GGG | + | chr1.4:82179791-82179810 | None:intergenic | 30.0% | |
| GACAATTTGATTCTTGAATG+GGG | - | chr1.4:82181435-82181454 | MS.gene71612:intron | 30.0% | |
| GATAAATACTTAACCCATTC+AGG | + | chr1.4:82180703-82180722 | None:intergenic | 30.0% | |
| GATTTGATCACAATATAGAG+GGG | - | chr1.4:82179148-82179167 | MS.gene71612:intron | 30.0% | |
| GGACAATTTGATTCTTGAAT+GGG | - | chr1.4:82181434-82181453 | MS.gene71612:intron | 30.0% | |
| GGATTTGATCACAATATAGA+GGG | - | chr1.4:82179147-82179166 | MS.gene71612:intron | 30.0% | |
| TAATGCAAATGAAACAGCAT+CGG | - | chr1.4:82180405-82180424 | MS.gene71612:CDS | 30.0% | |
| TATAGTACAGAGAAAATTCC+AGG | - | chr1.4:82180574-82180593 | MS.gene71612:intron | 30.0% | |
| TATCTTCACAACATATATGC+AGG | - | chr1.4:82178897-82178916 | MS.gene71612:CDS | 30.0% | |
| TCAAGACAACAACATTGAAA+GGG | - | chr1.4:82180043-82180062 | MS.gene71612:intron | 30.0% | |
| TGAATTTAAGTGTCAGGAAA+GGG | - | chr1.4:82181571-82181590 | MS.gene71612:CDS | 30.0% | |
| TGGACAATTTGATTCTTGAA+TGG | - | chr1.4:82181433-82181452 | MS.gene71612:intron | 30.0% | |
| TTGAATTTAAGTGTCAGGAA+AGG | - | chr1.4:82181570-82181589 | MS.gene71612:CDS | 30.0% | |
| TTTGTAATACTACCAACTTG+AGG | - | chr1.4:82180114-82180133 | MS.gene71612:intron | 30.0% | |
| ! | ACTGAAATGTTATTTGCCAT+AGG | - | chr1.4:82181015-82181034 | MS.gene71612:intron | 30.0% |
| ! | CACTTTTATGAGGATAAACT+AGG | - | chr1.4:82180829-82180848 | MS.gene71612:CDS | 30.0% |
| ! | TAATGATTGTGTTCTTTTGC+TGG | + | chr1.4:82179241-82179260 | None:intergenic | 30.0% |
| ! | TCTGTTGTTAAAAGGTACAA+AGG | - | chr1.4:82180763-82180782 | MS.gene71612:intron | 30.0% |
| !! | CTCCATTCCTTTTTAGTAAA+TGG | + | chr1.4:82180017-82180036 | None:intergenic | 30.0% |
| !! | CTTTTTAGTAAATGGTTGCA+AGG | + | chr1.4:82180009-82180028 | None:intergenic | 30.0% |
| !! | TGTCCATTTTCACTTTTATG+AGG | - | chr1.4:82180819-82180838 | MS.gene71612:CDS | 30.0% |
| !!! | ACTGTTTTATTTCAAGGCAT+TGG | + | chr1.4:82179074-82179093 | None:intergenic | 30.0% |
| !!! | CTCAAGTTTTTTGAGATAGT+TGG | + | chr1.4:82180971-82180990 | None:intergenic | 30.0% |
| !!! | TTTTTGGAGTATTGGTTTGA+AGG | + | chr1.4:82181549-82181568 | None:intergenic | 30.0% |
| AATTCCTCTACTATCTGCTT+TGG | + | chr1.4:82181478-82181497 | None:intergenic | 35.0% | |
| AATTTCCAAACTACTCCAAC+TGG | - | chr1.4:82181402-82181421 | MS.gene71612:intron | 35.0% | |
| AGAAACCTGAGATAAGTAGA+AGG | + | chr1.4:82178823-82178842 | None:intergenic | 35.0% | |
| ATAATCCAAGTGTGGAACTA+TGG | - | chr1.4:82179970-82179989 | MS.gene71612:CDS | 35.0% | |
| ATTATAATCCCTTGAACTGC+TGG | + | chr1.4:82181330-82181349 | None:intergenic | 35.0% | |
| CAAGGGATTATAATGTTTGC+TGG | - | chr1.4:82181336-82181355 | MS.gene71612:intron | 35.0% | |
| CTTTCACTAATGAGATGAAG+TGG | - | chr1.4:82180551-82180570 | MS.gene71612:intron | 35.0% | |
| GAGGAACCTATATCAAATGA+TGG | - | chr1.4:82179198-82179217 | MS.gene71612:intron | 35.0% | |
| GCAAATTCTAACAATGCATC+TGG | + | chr1.4:82180619-82180638 | None:intergenic | 35.0% | |
| GCTTGCTTCTATAAAAGAGA+AGG | + | chr1.4:82179792-82179811 | None:intergenic | 35.0% | |
| TAATCCAAGTGTGGAACTAT+GGG | - | chr1.4:82179971-82179990 | MS.gene71612:CDS | 35.0% | |
| TAGAACGGATAATAAAGACG+TGG | - | chr1.4:82180190-82180209 | MS.gene71612:intron | 35.0% | |
| TCTTTCCTTCTACTTATCTC+AGG | - | chr1.4:82178815-82178834 | MS.gene71612:CDS | 35.0% | |
| TGAGATAAGTAGAAGGAAAG+AGG | + | chr1.4:82178816-82178835 | None:intergenic | 35.0% | |
| TTATTTGCCATAGGATTGCA+AGG | - | chr1.4:82181024-82181043 | MS.gene71612:intron | 35.0% | |
| TTGTCGATGCATAAGTTTAG+TGG | + | chr1.4:82180231-82180250 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGAATTGATAGCA+TGG | - | chr1.4:82180779-82180798 | MS.gene71612:intron | 35.0% |
| ! | ACCTTGTACTTTTCCTGAAT+CGG | - | chr1.4:82179853-82179872 | MS.gene71612:CDS | 35.0% |
| ! | ATGGATTTTGTTCCTCAAGT+TGG | + | chr1.4:82180129-82180148 | None:intergenic | 35.0% |
| ! | CAAAGGAGAATTGATAGCAT+GGG | - | chr1.4:82180780-82180799 | MS.gene71612:intron | 35.0% |
| ! | CAGAGGTCATAACATTTTCT+GGG | - | chr1.4:82180660-82180679 | MS.gene71612:intron | 35.0% |
| ! | CGGCTTAAAATTACGTGTTT+TGG | + | chr1.4:82179751-82179770 | None:intergenic | 35.0% |
| ! | GTAGCACTGAATTATAGAGA+GGG | + | chr1.4:82178852-82178871 | None:intergenic | 35.0% |
| ! | TCAGAGGTCATAACATTTTC+TGG | - | chr1.4:82180659-82180678 | MS.gene71612:intron | 35.0% |
| ! | TGTAGCACTGAATTATAGAG+AGG | + | chr1.4:82178853-82178872 | None:intergenic | 35.0% |
| !! | GATAATGGAATTTCTGTCAG+AGG | - | chr1.4:82180643-82180662 | MS.gene71612:intron | 35.0% |
| !! | GGAGGCATTATATTAAACTC+AGG | - | chr1.4:82179126-82179145 | MS.gene71612:intron | 35.0% |
| !! | TCATTTTACGTTTGAAGTCG+AGG | + | chr1.4:82181179-82181198 | None:intergenic | 35.0% |
| !! | TTTTATTTCCACATTCAGCC+TGG | - | chr1.4:82179412-82179431 | MS.gene71612:CDS | 35.0% |
| !!! | AGTTTTTTGAGATAGTTGGG+TGG | + | chr1.4:82180967-82180986 | None:intergenic | 35.0% |
| !!! | GTTTTTTGAGATAGTTGGGT+GGG | + | chr1.4:82180966-82180985 | None:intergenic | 35.0% |
| AATCTTGCTTACATGAGGTC+AGG | - | chr1.4:82181069-82181088 | MS.gene71612:intron | 40.0% | |
| AATGGAAGTGAACTTGTGCA+TGG | - | chr1.4:82179483-82179502 | MS.gene71612:CDS | 40.0% | |
| ACAAAGGCAGATTTCCCATT+TGG | - | chr1.4:82180454-82180473 | MS.gene71612:intron | 40.0% | |
| ACGGATAATAAAGACGTGGT+TGG | - | chr1.4:82180194-82180213 | MS.gene71612:intron | 40.0% | |
| AGCCAAATCTTGCTTACATG+AGG | - | chr1.4:82181064-82181083 | MS.gene71612:intron | 40.0% | |
| ATAGAGGGGTGGACAATATT+TGG | - | chr1.4:82179162-82179181 | MS.gene71612:intron | 40.0% | |
| ATCTTGACACAAACCATTCC+TGG | + | chr1.4:82180519-82180538 | None:intergenic | 40.0% | |
| ATTCTCATCCAGCAGTTCAA+GGG | - | chr1.4:82181319-82181338 | MS.gene71612:intron | 40.0% | |
| CAAAAGGTTCAGCTAGAGAA+AGG | - | chr1.4:82179273-82179292 | MS.gene71612:CDS | 40.0% | |
| CAGATTTCCCATTTGGATGT+GGG | - | chr1.4:82180461-82180480 | MS.gene71612:intron | 40.0% | |
| CGGATAATAAAGACGTGGTT+GGG | - | chr1.4:82180195-82180214 | MS.gene71612:intron | 40.0% | |
| CTATCTGCTTTGGCTGTATA+AGG | + | chr1.4:82181468-82181487 | None:intergenic | 40.0% | |
| CTTGAGGAGATTATGCAATC+TGG | - | chr1.4:82180985-82181004 | MS.gene71612:intron | 40.0% | |
| GACCTCATGTAAGCAAGATT+TGG | + | chr1.4:82181069-82181088 | None:intergenic | 40.0% | |
| GATAAGTAGAAGGAAAGAGG+TGG | + | chr1.4:82178813-82178832 | None:intergenic | 40.0% | |
| GGGTGGACAATATTTGGAAA+TGG | - | chr1.4:82179168-82179187 | MS.gene71612:intron | 40.0% | |
| TATTCTCATCCAGCAGTTCA+AGG | - | chr1.4:82181318-82181337 | MS.gene71612:intron | 40.0% | |
| TCATGTAAGCAAGATTTGGC+TGG | + | chr1.4:82181065-82181084 | None:intergenic | 40.0% | |
| TGATAGCAAAGCATGGATGT+TGG | - | chr1.4:82179514-82179533 | MS.gene71612:CDS | 40.0% | |
| TGATTCTTGAATGGGGAAGT+GGG | - | chr1.4:82181442-82181461 | MS.gene71612:CDS | 40.0% | |
| TTGATCACAATATAGAGGGG+TGG | - | chr1.4:82179151-82179170 | MS.gene71612:intron | 40.0% | |
| TTGATTCTTGAATGGGGAAG+TGG | - | chr1.4:82181441-82181460 | MS.gene71612:CDS | 40.0% | |
| ! | AAAATGGCCTTGCAATCCTA+TGG | + | chr1.4:82181034-82181053 | None:intergenic | 40.0% |
| ! | ACCGATTCAGGAAAAGTACA+AGG | + | chr1.4:82179857-82179876 | None:intergenic | 40.0% |
| ! | AGGTCAGGTCTAGATTTTCT+TGG | - | chr1.4:82181084-82181103 | MS.gene71612:intron | 40.0% |
| ! | ATAGTGTAGTTTTCTTGGCC+TGG | + | chr1.4:82180595-82180614 | None:intergenic | 40.0% |
| ! | ATCCATGCTTTGCTATCACA+TGG | + | chr1.4:82179512-82179531 | None:intergenic | 40.0% |
| ! | ATGTTTTCGCAGTTACACGA+AGG | - | chr1.4:82181208-82181227 | MS.gene71612:CDS | 40.0% |
| ! | CAAACATTGACTACCAGGAA+TGG | - | chr1.4:82180503-82180522 | MS.gene71612:intron | 40.0% |
| ! | CTGGGATAGTGTAGTTTTCT+TGG | + | chr1.4:82180600-82180619 | None:intergenic | 40.0% |
| ! | GGATGTTGGTCTCTTCTAAA+AGG | - | chr1.4:82179528-82179547 | MS.gene71612:CDS | 40.0% |
| ! | TCTCACAAACATTGACTACC+AGG | - | chr1.4:82180498-82180517 | MS.gene71612:intron | 40.0% |
| ! | TGTTGGTCTCTTCTAAAAGG+TGG | - | chr1.4:82179531-82179550 | MS.gene71612:CDS | 40.0% |
| !! | CAATATACCTGATTTGGCTG+AGG | + | chr1.4:82181153-82181172 | None:intergenic | 40.0% |
| !! | CTTTGAAGAGGTACTAAGAG+AGG | - | chr1.4:82181293-82181312 | MS.gene71612:intron | 40.0% |
| AATAAAGACGTGGTTGGGAG+TGG | - | chr1.4:82180200-82180219 | MS.gene71612:intron | 45.0% | |
| ACAGCCAAAGCAGATAGTAG+AGG | - | chr1.4:82181471-82181490 | MS.gene71612:intron | 45.0% | |
| ACCTCGAAAAGAATCTCAGC+CGG | + | chr1.4:82179579-82179598 | None:intergenic | 45.0% | |
| ATTTGGCTGAGGATCCAAAC+TGG | + | chr1.4:82181142-82181161 | None:intergenic | 45.0% | |
| CACAACATATATGCAGGGCT+AGG | - | chr1.4:82178903-82178922 | MS.gene71612:CDS | 45.0% | |
| CTTGTCCAGTTGGAGTAGTT+TGG | + | chr1.4:82181410-82181429 | None:intergenic | 45.0% | |
| GCAGAGCAATAATCCAAGTG+TGG | - | chr1.4:82179962-82179981 | MS.gene71612:CDS | 45.0% | |
| GCAGATTTCCCATTTGGATG+TGG | - | chr1.4:82180460-82180479 | MS.gene71612:intron | 45.0% | |
| GGTTCATCCCACATCCAAAT+GGG | + | chr1.4:82180471-82180490 | None:intergenic | 45.0% | |
| TACTCCAACTGGACAAGTTG+TGG | - | chr1.4:82181413-82181432 | MS.gene71612:intron | 45.0% | |
| TCAACCCATAGTTCCACACT+TGG | + | chr1.4:82179978-82179997 | None:intergenic | 45.0% | |
| TGGTTCATCCCACATCCAAA+TGG | + | chr1.4:82180472-82180491 | None:intergenic | 45.0% | |
| TTGTCCACAACTTGTCCAGT+TGG | + | chr1.4:82181420-82181439 | None:intergenic | 45.0% | |
| TTTGGATCCTCAGCCAAATC+AGG | - | chr1.4:82181143-82181162 | MS.gene71612:CDS | 45.0% | |
| ! | GAAACAACAAGGACCGATTC+AGG | + | chr1.4:82179869-82179888 | None:intergenic | 45.0% |
| ! | GAACCTCAGAGAGCACAATA+TGG | - | chr1.4:82179102-82179121 | MS.gene71612:intron | 45.0% |
| ! | GCAAATGAAACAGCATCGGA+AGG | - | chr1.4:82180409-82180428 | MS.gene71612:CDS | 45.0% |
| ! | TGTCAGGAAAGGGTTTTCAC+AGG | - | chr1.4:82181581-82181600 | MS.gene71612:CDS | 45.0% |
| !! | TTGCAAGGCCATTTTGCAAG+TGG | - | chr1.4:82181039-82181058 | MS.gene71612:intron | 45.0% |
| AGGGCTAGGCGTTCATTCTT+TGG | - | chr1.4:82178917-82178936 | MS.gene71612:CDS | 50.0% | |
| ATGGCTCACAGAAGCCAGTT+TGG | - | chr1.4:82181125-82181144 | MS.gene71612:CDS | 50.0% | |
| CCTCCATATTGTGCTCTCTG+AGG | + | chr1.4:82179108-82179127 | None:intergenic | 50.0% | |
| CCTCGAAAAGAATCTCAGCC+GGG | + | chr1.4:82179578-82179597 | None:intergenic | 50.0% | |
| CTGGCTTCTGTGAGCCATAT+TGG | + | chr1.4:82181123-82181142 | None:intergenic | 50.0% | |
| CTGTTGAAACCAGCTTGTGC+TGG | + | chr1.4:82181363-82181382 | None:intergenic | 50.0% | |
| GGAAGTGAACTTGTGCATGG+TGG | - | chr1.4:82179486-82179505 | MS.gene71612:CDS | 50.0% | |
| GGCCATGTGATAGCAAAGCA+TGG | - | chr1.4:82179507-82179526 | MS.gene71612:CDS | 50.0% | |
| ! | CAGAGAGCACAATATGGAGG+AGG | - | chr1.4:82179108-82179127 | MS.gene71612:intron | 50.0% |
| ! | CCTCAGAGAGCACAATATGG+AGG | - | chr1.4:82179105-82179124 | MS.gene71612:intron | 50.0% |
| ! | GCAGGCAGAGTACTTTGAAG+AGG | - | chr1.4:82181281-82181300 | MS.gene71612:CDS | 50.0% |
| ! | TTGGCTGGCCACTTGCAAAA+TGG | + | chr1.4:82181050-82181069 | None:intergenic | 50.0% |
| AGCTGAAGCCAGGCTGAATG+TGG | + | chr1.4:82179423-82179442 | None:intergenic | 55.0% | |
| AGTCGCAAACTTCTCGAGCC+CGG | - | chr1.4:82179557-82179576 | MS.gene71612:CDS | 55.0% | |
| CGCGGCTTTGCGCAATTCAT+CGG | + | chr1.4:82180728-82180747 | None:intergenic | 55.0% | |
| GCGGCTTTGCGCAATTCATC+GGG | + | chr1.4:82180727-82180746 | None:intergenic | 55.0% | |
| TCCTTCACTCAGCTGAAGCC+AGG | + | chr1.4:82179433-82179452 | None:intergenic | 55.0% | |
| TTTGCTGGTCCAGCACAAGC+TGG | - | chr1.4:82181351-82181370 | MS.gene71612:intron | 55.0% | |
| ! | CCCGGCTGAGATTCTTTTCG+AGG | - | chr1.4:82179575-82179594 | MS.gene71612:CDS | 55.0% |
| GCCTGGCTTCAGCTGAGTGA+AGG | - | chr1.4:82179429-82179448 | MS.gene71612:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82178770 | 82181632 | 82178770 | ID=MS.gene71612 |
| chr1.4 | mRNA | 82178770 | 82181632 | 82178770 | ID=MS.gene71612.t1;Parent=MS.gene71612 |
| chr1.4 | exon | 82181566 | 82181632 | 82181566 | ID=MS.gene71612.t1.exon1;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82181566 | 82181632 | 82181566 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82181437 | 82181483 | 82181437 | ID=MS.gene71612.t1.exon2;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82181437 | 82181483 | 82181437 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82181087 | 82181309 | 82181087 | ID=MS.gene71612.t1.exon3;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82181087 | 82181309 | 82181087 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82180806 | 82180972 | 82180806 | ID=MS.gene71612.t1.exon4;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82180806 | 82180972 | 82180806 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82180338 | 82180436 | 82180338 | ID=MS.gene71612.t1.exon5;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82180338 | 82180436 | 82180338 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82179238 | 82180029 | 82179238 | ID=MS.gene71612.t1.exon6;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82179238 | 82180029 | 82179238 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| chr1.4 | exon | 82178770 | 82179117 | 82178770 | ID=MS.gene71612.t1.exon7;Parent=MS.gene71612.t1 |
| chr1.4 | CDS | 82178770 | 82179117 | 82178770 | ID=cds.MS.gene71612.t1;Parent=MS.gene71612.t1 |
| Gene Sequence |
| Protein sequence |
