Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72735.t1 | XP_003612484.1 | 97.7 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 3.70E-63 | 250.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72735.t1 | G7K410 | 97.7 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 2.6e-63 | 250.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene72735.t1 | TR | SWI/SNF-BAF60b |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049756 | MS.gene72735 | 0.806008 | 1.01E-49 | -1.69E-46 |
MS.gene050277 | MS.gene72735 | 0.862151 | 6.21E-64 | -1.69E-46 |
MS.gene050303 | MS.gene72735 | 0.812355 | 4.42E-51 | -1.69E-46 |
MS.gene050719 | MS.gene72735 | 0.808386 | 3.18E-50 | -1.69E-46 |
MS.gene050721 | MS.gene72735 | 0.810378 | 1.19E-50 | -1.69E-46 |
MS.gene051063 | MS.gene72735 | 0.821265 | 4.43E-53 | -1.69E-46 |
MS.gene051243 | MS.gene72735 | 0.806904 | 6.56E-50 | -1.69E-46 |
MS.gene051245 | MS.gene72735 | 0.803433 | 3.49E-49 | -1.69E-46 |
MS.gene051633 | MS.gene72735 | 0.835929 | 1.26E-56 | -1.69E-46 |
MS.gene051746 | MS.gene72735 | 0.861331 | 1.11E-63 | -1.69E-46 |
MS.gene051748 | MS.gene72735 | 0.860338 | 2.21E-63 | -1.69E-46 |
MS.gene051903 | MS.gene72735 | 0.834292 | 3.26E-56 | -1.69E-46 |
MS.gene052176 | MS.gene72735 | 0.825475 | 4.59E-54 | -1.69E-46 |
MS.gene052286 | MS.gene72735 | 0.828362 | 9.38E-55 | -1.69E-46 |
MS.gene052302 | MS.gene72735 | 0.842398 | 2.65E-58 | -1.69E-46 |
MS.gene052376 | MS.gene72735 | 0.834287 | 3.27E-56 | -1.69E-46 |
MS.gene052947 | MS.gene72735 | 0.828272 | 9.86E-55 | -1.69E-46 |
MS.gene055555 | MS.gene72735 | 0.802893 | 4.52E-49 | -1.69E-46 |
MS.gene055778 | MS.gene72735 | 0.810997 | 8.73E-51 | -1.69E-46 |
MS.gene055808 | MS.gene72735 | 0.800892 | 1.16E-48 | -1.69E-46 |
MS.gene056069 | MS.gene72735 | -0.826864 | 2.15E-54 | -1.69E-46 |
MS.gene056091 | MS.gene72735 | 0.81964 | 1.04E-52 | -1.69E-46 |
MS.gene056631 | MS.gene72735 | 0.855211 | 7.35E-62 | -1.69E-46 |
MS.gene057057 | MS.gene72735 | 0.805519 | 1.28E-49 | -1.69E-46 |
MS.gene057079 | MS.gene72735 | 0.834298 | 3.25E-56 | -1.69E-46 |
MS.gene057140 | MS.gene72735 | 0.803993 | 2.67E-49 | -1.69E-46 |
MS.gene057234 | MS.gene72735 | 0.819618 | 1.06E-52 | -1.69E-46 |
MS.gene057705 | MS.gene72735 | 0.832876 | 7.36E-56 | -1.69E-46 |
MS.gene05795 | MS.gene72735 | 0.840835 | 6.85E-58 | -1.69E-46 |
MS.gene058084 | MS.gene72735 | 0.815856 | 7.46E-52 | -1.69E-46 |
MS.gene058182 | MS.gene72735 | 0.804929 | 1.71E-49 | -1.69E-46 |
MS.gene058238 | MS.gene72735 | 0.822421 | 2.39E-53 | -1.69E-46 |
MS.gene058798 | MS.gene72735 | 0.802529 | 5.37E-49 | -1.69E-46 |
MS.gene058906 | MS.gene72735 | 0.863432 | 2.50E-64 | -1.69E-46 |
MS.gene059898 | MS.gene72735 | 0.821979 | 3.03E-53 | -1.69E-46 |
MS.gene06001 | MS.gene72735 | 0.861721 | 8.41E-64 | -1.69E-46 |
MS.gene060165 | MS.gene72735 | 0.819921 | 9.01E-53 | -1.69E-46 |
MS.gene060586 | MS.gene72735 | 0.807206 | 5.66E-50 | -1.69E-46 |
MS.gene060619 | MS.gene72735 | 0.82527 | 5.14E-54 | -1.69E-46 |
MS.gene061040 | MS.gene72735 | -0.805216 | 1.49E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene72735.t1 | MTR_5g025520 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 3.30e-93 | 265 |
MS.gene72735.t1 | MTR_5g025500 | 37.662 | 77 | 48 | 0 | 26 | 102 | 54 | 130 | 1.42e-11 | 58.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 46 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCAAACTCTACAGTTTC+CGG | 0.200149 | 5.4:-16596396 | MS.gene72735:CDS |
ATGAATCCGGCGGGTTTAAC+AGG | 0.280966 | 5.4:-16596568 | MS.gene72735:CDS |
GGAAATGATGGAAGCAATTT+CGG | 0.295914 | 5.4:+16596423 | None:intergenic |
CATGATTTCGGCGACGGCTT+TGG | 0.360532 | 5.4:+16596522 | None:intergenic |
CAGTGAACTCTGCACTTTCA+TGG | 0.368977 | 5.4:-16596467 | MS.gene72735:CDS |
CATCAAACTCTACAGTTTCC+GGG | 0.376717 | 5.4:-16596395 | MS.gene72735:intron |
ATCGCACCCTGGCTGAATTC+CGG | 0.377231 | 5.4:+16595322 | None:intergenic |
TTTGCCGACACCCATGATTT+CGG | 0.381159 | 5.4:+16596510 | None:intergenic |
TTTGATGAACTTGGAAATGA+TGG | 0.402949 | 5.4:+16596411 | None:intergenic |
ACTGGTAGCTTTGCGTGTCT+TGG | 0.404946 | 5.4:+16596486 | None:intergenic |
CAAAGCCGTCGCCGAAATCA+TGG | 0.409452 | 5.4:-16596521 | MS.gene72735:CDS |
GTATCAAGAAAGACAAGCTT+TGG | 0.428352 | 5.4:-16595417 | MS.gene72735:CDS |
ACTGTAGAGTTTGATGAACT+TGG | 0.446589 | 5.4:+16596402 | None:intergenic |
GGGAAAGGCCAACAGAAGAA+AGG | 0.464992 | 5.4:-16595253 | MS.gene72735:CDS |
GACAGAATCTTAGCAATCTC+AGG | 0.466374 | 5.4:+16595346 | None:intergenic |
TAATATCAAGGATACTAATA+CGG | 0.503603 | 5.4:-16595299 | MS.gene72735:CDS |
TCTGTCTCCGGAATTCAGCC+AGG | 0.504471 | 5.4:-16595329 | MS.gene72735:CDS |
GACACCCATGATTTCGGCGA+CGG | 0.507275 | 5.4:+16596516 | None:intergenic |
GGAAAGGCCAACAGAAGAAA+GGG | 0.508550 | 5.4:-16595252 | MS.gene72735:CDS |
GATTGCTAAGATTCTGTCTC+CGG | 0.511219 | 5.4:-16595341 | MS.gene72735:CDS |
AGTGAACTCTGCACTTTCAT+GGG | 0.512210 | 5.4:-16596466 | MS.gene72735:CDS |
AGCTTGTCTTTCTTGATACC+AGG | 0.515565 | 5.4:+16595421 | None:intergenic |
TATGGTGTTGTGCAGAGTCC+TGG | 0.516143 | 5.4:-16595439 | MS.gene72735:intron |
CCAGGGTGCGATTAATATCA+AGG | 0.519238 | 5.4:-16595311 | MS.gene72735:CDS |
CATGAAAGTGCAGAGTTCAC+TGG | 0.524418 | 5.4:+16596468 | None:intergenic |
ATCCAGCAGAAGGATGAATC+CGG | 0.526821 | 5.4:-16596581 | None:intergenic |
CTTCGCCCTGTTAAACCCGC+CGG | 0.548257 | 5.4:+16596562 | None:intergenic |
TATCAAGAAAGACAAGCTTT+GGG | 0.550356 | 5.4:-16595416 | MS.gene72735:CDS |
TCTTCCGCGGATAACACAAA+GGG | 0.561908 | 5.4:-16595274 | MS.gene72735:CDS |
AAAGCCGTCGCCGAAATCAT+GGG | 0.576114 | 5.4:-16596520 | MS.gene72735:CDS |
GCGGATAACACAAAGGGGAA+AGG | 0.582569 | 5.4:-16595268 | MS.gene72735:CDS |
TTCTTCCGCGGATAACACAA+AGG | 0.602214 | 5.4:-16595275 | MS.gene72735:CDS |
CGGCGGGTTTAACAGGGCGA+AGG | 0.602549 | 5.4:-16596561 | MS.gene72735:CDS |
TGAATCCGGCGGGTTTAACA+GGG | 0.604481 | 5.4:-16596567 | MS.gene72735:CDS |
GTCGCCGAAATCATGGGTGT+CGG | 0.610089 | 5.4:-16596514 | MS.gene72735:CDS |
AGCAGAAGGATGAATCCGGC+GGG | 0.612519 | 5.4:-16596577 | None:intergenic |
AATTTGCAAACACTGTTGCG+TGG | 0.632781 | 5.4:-16595388 | MS.gene72735:CDS |
TTGCGTGGCAGAAACAGCGT+TGG | 0.639499 | 5.4:-16595373 | MS.gene72735:CDS |
ATTTCGGAACGAGATTGATG+AGG | 0.642540 | 5.4:+16596439 | None:intergenic |
CTGTCTCCGGAATTCAGCCA+GGG | 0.642587 | 5.4:-16595328 | MS.gene72735:CDS |
AGGGCGAAGGAGCATGTCGA+CGG | 0.655015 | 5.4:-16596548 | MS.gene72735:CDS |
CAGCAGAAGGATGAATCCGG+CGG | 0.656372 | 5.4:-16596578 | None:intergenic |
TACTAATACGGATTCTTCCG+CGG | 0.657291 | 5.4:-16595287 | MS.gene72735:CDS |
CCTTGATATTAATCGCACCC+TGG | 0.662781 | 5.4:+16595311 | None:intergenic |
TTTCCCCTTTGTGTTATCCG+CGG | 0.666626 | 5.4:+16595270 | None:intergenic |
CTTCCGCGGATAACACAAAG+GGG | 0.722706 | 5.4:-16595273 | MS.gene72735:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATAATAAAAGATAAAATA+AGG | + | chr5.4:16596189-16596208 | None:intergenic | 10.0% |
!! | AATGAAACAAAAAGAAAAAT+GGG | + | chr5.4:16595450-16595469 | None:intergenic | 15.0% |
!! | TAATGAAACAAAAAGAAAAA+TGG | + | chr5.4:16595451-16595470 | None:intergenic | 15.0% |
!!! | TTTATTTACTTTTGCTTATT+TGG | - | chr5.4:16596338-16596357 | MS.gene72735:intron | 15.0% |
!! | ATTAAGCTGTTTATAAAAAC+AGG | - | chr5.4:16596132-16596151 | MS.gene72735:intron | 20.0% |
!! | CTTTCCATAAAATAAGATAT+AGG | + | chr5.4:16596159-16596178 | None:intergenic | 20.0% |
!! | TAATATCAAGGATACTAATA+CGG | - | chr5.4:16596509-16596528 | MS.gene72735:CDS | 20.0% |
!! | TCAAATAAACCAATTCAAAT+AGG | + | chr5.4:16595818-16595837 | None:intergenic | 20.0% |
!! | TTAAGCTGTTTATAAAAACA+GGG | - | chr5.4:16596133-16596152 | MS.gene72735:intron | 20.0% |
!!! | TAAGTTTGTTTCTATAACAA+AGG | + | chr5.4:16596098-16596117 | None:intergenic | 20.0% |
! | AAGATTAAAGACTAATCAGT+AGG | + | chr5.4:16595691-16595710 | None:intergenic | 25.0% |
! | AGATTAAAGACTAATCAGTA+GGG | + | chr5.4:16595690-16595709 | None:intergenic | 25.0% |
! | TTGAAAATAATCACTAGTCA+GGG | + | chr5.4:16595777-16595796 | None:intergenic | 25.0% |
! | TTTGAAAATAATCACTAGTC+AGG | + | chr5.4:16595778-16595797 | None:intergenic | 25.0% |
!! | TAAACTATCTCTGAAAAACA+TGG | + | chr5.4:16595527-16595546 | None:intergenic | 25.0% |
!! | TACTTTTGCTTATTTGGAAA+TGG | - | chr5.4:16596344-16596363 | MS.gene72735:intron | 25.0% |
!! | TTTTCATAAGTTCTCTCAAA+CGG | + | chr5.4:16595962-16595981 | None:intergenic | 25.0% |
ATTAAAGACTAATCAGTAGG+GGG | + | chr5.4:16595688-16595707 | None:intergenic | 30.0% | |
GATTAAAGACTAATCAGTAG+GGG | + | chr5.4:16595689-16595708 | None:intergenic | 30.0% | |
GCTTATTTGGAAATGGTATA+TGG | - | chr5.4:16596351-16596370 | MS.gene72735:intron | 30.0% | |
TATCAAGAAAGACAAGCTTT+GGG | - | chr5.4:16596392-16596411 | MS.gene72735:intron | 30.0% | |
TCTGAAAAACATGGAAATGA+TGG | + | chr5.4:16595518-16595537 | None:intergenic | 30.0% | |
TTGAGAGAACTTATGAAAAC+AGG | - | chr5.4:16595963-16595982 | MS.gene72735:intron | 30.0% | |
TTTGATGAACTTGGAAATGA+TGG | + | chr5.4:16595400-16595419 | None:intergenic | 30.0% | |
!!! | AGGGCCTATATCTTATTTTA+TGG | - | chr5.4:16596152-16596171 | MS.gene72735:intron | 30.0% |
AAATGGGAAGAATTGAAACC+CGG | + | chr5.4:16595434-16595453 | None:intergenic | 35.0% | |
AACCAATTCAAATAGGCTCA+TGG | + | chr5.4:16595811-16595830 | None:intergenic | 35.0% | |
AACCATGAGCCTATTTGAAT+TGG | - | chr5.4:16595806-16595825 | MS.gene72735:intron | 35.0% | |
ACTGTAGAGTTTGATGAACT+TGG | + | chr5.4:16595409-16595428 | None:intergenic | 35.0% | |
CAAGTGCTTGTTTCAATACA+TGG | + | chr5.4:16595847-16595866 | None:intergenic | 35.0% | |
GAGAACATTGATCAAACAGT+TGG | + | chr5.4:16595481-16595500 | None:intergenic | 35.0% | |
GGATAAACAACTTCATTGAG+TGG | + | chr5.4:16596263-16596282 | None:intergenic | 35.0% | |
GTATCAAGAAAGACAAGCTT+TGG | - | chr5.4:16596391-16596410 | MS.gene72735:intron | 35.0% | |
TCATCAAACTCTACAGTTTC+CGG | - | chr5.4:16595412-16595431 | MS.gene72735:CDS | 35.0% | |
! | AGCGATAAGCTCTTTTCATA+AGG | + | chr5.4:16596046-16596065 | None:intergenic | 35.0% |
! | GGAAATGATGGAAGCAATTT+CGG | + | chr5.4:16595388-16595407 | None:intergenic | 35.0% |
! | TCTTTTTCCCTTTCTTCTGT+TGG | + | chr5.4:16596566-16596585 | None:intergenic | 35.0% |
AATTTGCAAACACTGTTGCG+TGG | - | chr5.4:16596420-16596439 | MS.gene72735:CDS | 40.0% | |
AGCTTGTCTTTCTTGATACC+AGG | + | chr5.4:16596390-16596409 | None:intergenic | 40.0% | |
AGTCCCTATCAGTGATTAAG+TGG | + | chr5.4:16595733-16595752 | None:intergenic | 40.0% | |
AGTGAACTCTGCACTTTCAT+GGG | - | chr5.4:16595342-16595361 | MS.gene72735:CDS | 40.0% | |
ATTTCGGAACGAGATTGATG+AGG | + | chr5.4:16595372-16595391 | None:intergenic | 40.0% | |
CAATGGCAACACTCTTACTT+AGG | + | chr5.4:16596293-16596312 | None:intergenic | 40.0% | |
CACCCACTTAATCACTGATA+GGG | - | chr5.4:16595727-16595746 | MS.gene72735:intron | 40.0% | |
CACTCTTACTTAGGCTCATT+TGG | + | chr5.4:16596284-16596303 | None:intergenic | 40.0% | |
CATCAAACTCTACAGTTTCC+GGG | - | chr5.4:16595413-16595432 | MS.gene72735:CDS | 40.0% | |
CTTTCACTTTAGTCGCTCAA+TGG | + | chr5.4:16596310-16596329 | None:intergenic | 40.0% | |
GACAGAATCTTAGCAATCTC+AGG | + | chr5.4:16596465-16596484 | None:intergenic | 40.0% | |
GATTGCTAAGATTCTGTCTC+CGG | - | chr5.4:16596467-16596486 | MS.gene72735:CDS | 40.0% | |
GTCCCTATCAGTGATTAAGT+GGG | + | chr5.4:16595732-16595751 | None:intergenic | 40.0% | |
TACTAATACGGATTCTTCCG+CGG | - | chr5.4:16596521-16596540 | MS.gene72735:CDS | 40.0% | |
TCACCCACTTAATCACTGAT+AGG | - | chr5.4:16595726-16595745 | MS.gene72735:intron | 40.0% | |
TTGAGTGGTTATAGCACAAG+CGG | + | chr5.4:16596248-16596267 | None:intergenic | 40.0% | |
CAGTGAACTCTGCACTTTCA+TGG | - | chr5.4:16595341-16595360 | MS.gene72735:CDS | 45.0% | |
CCAGGGTGCGATTAATATCA+AGG | - | chr5.4:16596497-16596516 | MS.gene72735:CDS | 45.0% | |
CCTTGATATTAATCGCACCC+TGG | + | chr5.4:16596500-16596519 | None:intergenic | 45.0% | |
GGAAAGGCCAACAGAAGAAA+GGG | - | chr5.4:16596556-16596575 | MS.gene72735:CDS | 45.0% | |
TCTTCCGCGGATAACACAAA+GGG | - | chr5.4:16596534-16596553 | MS.gene72735:CDS | 45.0% | |
TTCTTCCGCGGATAACACAA+AGG | - | chr5.4:16596533-16596552 | MS.gene72735:CDS | 45.0% | |
TTTCCCCTTTGTGTTATCCG+CGG | + | chr5.4:16596541-16596560 | None:intergenic | 45.0% | |
TTTGCCGACACCCATGATTT+CGG | + | chr5.4:16595301-16595320 | None:intergenic | 45.0% | |
! | CATGAAAGTGCAGAGTTCAC+TGG | + | chr5.4:16595343-16595362 | None:intergenic | 45.0% |
AAAGCCGTCGCCGAAATCAT+GGG | - | chr5.4:16595288-16595307 | MS.gene72735:CDS | 50.0% | |
CTTCCGCGGATAACACAAAG+GGG | - | chr5.4:16596535-16596554 | MS.gene72735:CDS | 50.0% | |
GCGGATAACACAAAGGGGAA+AGG | - | chr5.4:16596540-16596559 | MS.gene72735:CDS | 50.0% | |
GGGAAAGGCCAACAGAAGAA+AGG | - | chr5.4:16596555-16596574 | MS.gene72735:CDS | 50.0% | |
! | ACTGGTAGCTTTGCGTGTCT+TGG | + | chr5.4:16595325-16595344 | None:intergenic | 50.0% |
! | ATGAATCCGGCGGGTTTAAC+AGG | - | chr5.4:16595240-16595259 | MS.gene72735:CDS | 50.0% |
! | TGAATCCGGCGGGTTTAACA+GGG | - | chr5.4:16595241-16595260 | MS.gene72735:CDS | 50.0% |
!! | TATGGTGTTGTGCAGAGTCC+TGG | - | chr5.4:16596369-16596388 | MS.gene72735:intron | 50.0% |
ATCGCACCCTGGCTGAATTC+CGG | + | chr5.4:16596489-16596508 | None:intergenic | 55.0% | |
CAAAGCCGTCGCCGAAATCA+TGG | - | chr5.4:16595287-16595306 | MS.gene72735:CDS | 55.0% | |
CATGATTTCGGCGACGGCTT+TGG | + | chr5.4:16595289-16595308 | None:intergenic | 55.0% | |
CTGTCTCCGGAATTCAGCCA+GGG | - | chr5.4:16596480-16596499 | MS.gene72735:CDS | 55.0% | |
GACACCCATGATTTCGGCGA+CGG | + | chr5.4:16595295-16595314 | None:intergenic | 55.0% | |
GTCGCCGAAATCATGGGTGT+CGG | - | chr5.4:16595294-16595313 | MS.gene72735:CDS | 55.0% | |
TCTGTCTCCGGAATTCAGCC+AGG | - | chr5.4:16596479-16596498 | MS.gene72735:CDS | 55.0% | |
TTGCGTGGCAGAAACAGCGT+TGG | - | chr5.4:16596435-16596454 | MS.gene72735:CDS | 55.0% | |
CTTCGCCCTGTTAAACCCGC+CGG | + | chr5.4:16595249-16595268 | None:intergenic | 60.0% | |
! | AGGGCGAAGGAGCATGTCGA+CGG | - | chr5.4:16595260-16595279 | MS.gene72735:CDS | 60.0% |
! | CGGCGGGTTTAACAGGGCGA+AGG | - | chr5.4:16595247-16595266 | MS.gene72735:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 16595240 | 16596590 | 16595240 | ID=MS.gene72735 |
chr5.4 | mRNA | 16595240 | 16596590 | 16595240 | ID=MS.gene72735.t1;Parent=MS.gene72735 |
chr5.4 | exon | 16596396 | 16596590 | 16596396 | ID=MS.gene72735.t1.exon1;Parent=MS.gene72735.t1 |
chr5.4 | CDS | 16596396 | 16596590 | 16596396 | ID=cds.MS.gene72735.t1;Parent=MS.gene72735.t1 |
chr5.4 | exon | 16595240 | 16595446 | 16595240 | ID=MS.gene72735.t1.exon2;Parent=MS.gene72735.t1 |
chr5.4 | CDS | 16595240 | 16595446 | 16595240 | ID=cds.MS.gene72735.t1;Parent=MS.gene72735.t1 |
Gene Sequence |
Protein sequence |