AlfalfaGEDB | MS.gene73811

M. sativa cultivar XinJiangDaYe / MS.gene73811

KEGG: K02116
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73811.t1	XP_003607581.1	96.8	341	10	1	1	340	1	341	6.50E-181	643.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73811.t1	O82279	62.8	347	104	7	1	332	1	337	1.2e-111	404.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73811.t1	G7JCK8	96.8	341	10	1	1	340	1	341	4.7e-181	643.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050060	MS.gene73811	0.839961	1.16E-57	-1.69E-46
MS.gene050400	MS.gene73811	0.826236	3.03E-54	-1.69E-46
MS.gene050406	MS.gene73811	0.819551	1.09E-52	-1.69E-46
MS.gene050426	MS.gene73811	-0.813132	2.99E-51	-1.69E-46
MS.gene050670	MS.gene73811	0.833263	5.90E-56	-1.69E-46
MS.gene05081	MS.gene73811	0.809669	1.69E-50	-1.69E-46
MS.gene050812	MS.gene73811	0.813098	3.04E-51	-1.69E-46
MS.gene051171	MS.gene73811	0.840587	7.95E-58	-1.69E-46
MS.gene051208	MS.gene73811	0.825622	4.24E-54	-1.69E-46
MS.gene051242	MS.gene73811	0.803736	3.02E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73811.t1	MTR_4g079850	96.774	341	10	1	1	340	1	341	0.0	676

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73811.t1	AT2G31040	62.824	347	104	7	1	332	1	337	1.38e-150	427

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Find 86 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATGAAATGGTCTAC+TGG	0.495036	4.4:-31389244	MS.gene73811:CDS
AAAGTGACAGCAAGAGAGTA+AGG	0.470284	4.4:-31387382	MS.gene73811:CDS
AAATAATCATCAGAAGCTAA+AGG	0.495271	4.4:+31389145	None:intergenic
AAGCTTCGTAAGTATTGGGG+TGG	0.659164	4.4:-31389181	MS.gene73811:CDS
AAGTATTGGCTGCTCAATAC+AGG	0.415220	4.4:-31387058	MS.gene73811:CDS
AAGTGCATAATTCCATATTC+TGG	0.258872	4.4:+31385640	None:intergenic
AATAATCATCAGAAGCTAAA+GGG	0.460622	4.4:+31389146	None:intergenic
AATTGGGCAGCCAAGATTAC+TGG	0.331100	4.4:-31385966	MS.gene73811:CDS
ACAACAGGAACCAGTAATCT+TGG	0.444377	4.4:+31385956	None:intergenic
ACATTGGGTATAGGTGGCGT+TGG	0.545773	4.4:-31386862	MS.gene73811:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAAACAAACCAGACAA+CGG	+	chr4.4:31387879-31387898	None:intergenic	30.0%
AAGAAAGACTAATAAACGCA+TGG	+	chr4.4:31386480-31386499	None:intergenic	30.0%
AAGTGCATAATTCCATATTC+TGG	+	chr4.4:31389249-31389268	None:intergenic	30.0%
AGTCTTTGGTCGATATATTT+AGG	+	chr4.4:31389365-31389384	None:intergenic	30.0%
ATGATGATTGTGTATGTACA+CGG	-	chr4.4:31385980-31385999	MS.gene73811:intron	30.0%
ATTGATTGATGAATTGCTTG+TGG	-	chr4.4:31385934-31385953	MS.gene73811:CDS	30.0%
ATTTATCCAATATCCCTCAA+TGG	+	chr4.4:31388231-31388250	None:intergenic	30.0%
CCAATAAAAAACCCATGAAA+TGG	-	chr4.4:31385634-31385653	MS.gene73811:CDS	30.0%
CTTATATAGGTGTATAACCT+AGG	-	chr4.4:31387676-31387695	MS.gene73811:intron	30.0%
GAACAGGGAGAAATATATTA+TGG	-	chr4.4:31388679-31388698	MS.gene73811:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	31385522	31389386	31385522	ID=MS.gene73811
chr4.4	mRNA	31385522	31389386	31385522	ID=MS.gene73811.t1;Parent=MS.gene73811
chr4.4	exon	31389075	31389386	31389075	ID=MS.gene73811.t1.exon1;Parent=MS.gene73811.t1
chr4.4	CDS	31389075	31389386	31389075	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31387801	31387850	31387801	ID=MS.gene73811.t1.exon2;Parent=MS.gene73811.t1
chr4.4	CDS	31387801	31387850	31387801	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31387616	31387685	31387616	ID=MS.gene73811.t1.exon3;Parent=MS.gene73811.t1
chr4.4	CDS	31387616	31387685	31387616	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31387310	31387411	31387310	ID=MS.gene73811.t1.exon4;Parent=MS.gene73811.t1
chr4.4	CDS	31387310	31387411	31387310	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31387043	31387123	31387043	ID=MS.gene73811.t1.exon5;Parent=MS.gene73811.t1
chr4.4	CDS	31387043	31387123	31387043	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31386817	31386908	31386817	ID=MS.gene73811.t1.exon6;Parent=MS.gene73811.t1
chr4.4	CDS	31386817	31386908	31386817	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31386424	31386519	31386424	ID=MS.gene73811.t1.exon7;Parent=MS.gene73811.t1
chr4.4	CDS	31386424	31386519	31386424	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31385926	31385994	31385926	ID=MS.gene73811.t1.exon8;Parent=MS.gene73811.t1
chr4.4	CDS	31385926	31385994	31385926	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1
chr4.4	exon	31385522	31385672	31385522	ID=MS.gene73811.t1.exon9;Parent=MS.gene73811.t1
chr4.4	CDS	31385522	31385672	31385522	ID=cds.MS.gene73811.t1;Parent=MS.gene73811.t1

Gene Sequence

>MS.gene73811

ATGGGAATTATGAACTACTACAATTGTGTAACATGTGCAGCAACACCAATGTCACAAGATTCATCATCATCATCATTAGCACCAAACCCAAGACAAACAAAGGTTATTCTTCCCAATAAAAAACCCATGAAATGGTCTACTGGTATGGCTCCTGGTGACTACGGCGGTCCTCCAACAACCACCAAGCTTCGTAAGTATTGGGGTGGTGGAGACCCTGACCCTTTAGCTTCTGATGATTATTTGTGGAACAAAGATTTTGTTCCTCATTTTGAAAGGATGATTCAGCCACCTGAACAATCTTCTCCTTCAAAGGTTTTTACTTTTTTTGTAACATTCTATAATTTTCCATCTGGGTGTGTTTGAAGTGGTGCTGTTTTGTTGGAATTATTATGGAATATGGATTGATTGATTGATTGATTGATGAATTGCTTGTGGGACATGTATACTTGCTAGTTATGATGATGATTGTGTATGTACACGGACACGACACTAACACATTACATGAGTAATAATTTGAGAAAATGAAGTAATTGAATGTAATCTGACACACTTTCGATCAGAAGTGTCAGGTGTTTTCGAGAGTTTGTTACTTGATTATTGTGTTTGGATTAATGAATAAGAAAAACTTATTATGTCTATTCTTATTTTCATATATTGAATTTTGAGTTTAAGTAAAGATAGTCACTTATCCAACTTAATCCTAATCCCTTTCAAGCCTAACAAGTAACAAGCACTGAGATTTACAATGAAGTTAGTTATGTTTTTCTCTGTGTTCTCTATGTTTTGCTCCTATATGTAATATATAAGAATGTTGTCCCAATTTATTTTCTGTATTATAATTAGATTTGATTGGTTAGCCCTTTTAAGTAATATTGATATTTGAGACCATTGGAACAAAGGAGTAAAATTAACAGAACCAAATTTTACTTTTACTTCAATTGACTTATCGTTAGATCCATGCGTTTATTAGTCTTTCTTTACATAATGATACTCTGTGAGGAAAGGAAAATACATACAAATTCAGTATTTAGTAGAAATGGAAATGAAATGTACAAAACCAGATTTAATTCACATAATCATCAATGTATGACACTTCATATGTTGTGAATGTGTAGATTTACTCACAACAGTTATACCATCAAATGCCTCTTAATATCTATATCTATTGAACACATTTATGGGTGTGGAAATGTATGGAGAACAGTTACTTTGTTTAGCATGGAGTTAATTCATTCCAATTTTCAGATAGGAATCAGAATGATACTAAACAATAGATGGTTTTTACGATGCTATCTTTTTCATTCCTTGTTGACTCAAGAAATTTTAATATAATTGGTTTTTGATAGAACATCATGGTGTCGTTTGATCCATTGAACCAAACCCGCATTGTGACAAAAATGTTGGTTGCTGGTAGTGGTGGTGACTCAAGATATCTTGGTGAATGGCTATCGATTATTTTTTTGAAGGAAGGCTATTGATTATTTTGTTTAATTCCATGAATTGGTACTGACATAAATATTTTTTTTTTGTAAACAGGAAGTGCCTTCTGGGTTTCTAAGCTTAAATAGAGTCATGAGCCTCGACAGGTCTCGCTCTACAATATTTGTATACAAGTCTTCAAATGCACTTTCGTTGTTCTATTTTTTTTTTCTTTTGTTCTCTCTTCATCTATTGTTAAGTCATTTGATTTATGAACTGTAGTATGGAAGTTGATTTGAGCAAAGAACTCTCAGCTCCTGTTGTACAGCAGCAAATAGAGACACCAATTATTGTAAGAGAAGTGTATCTTCCTTTGATTTTTCCCTGATTAATATATCCTTTGGATTTTGAGTATTTAATTCAGAGGGTATTAAATATTTAATTCTCTTTATCTATTTAGTATCGAATTCTATTTGAAAAACAAAAAAAGCACATGGTTTGTTGTGTTGTTTTTCCAAAGGTTCATTTATCTTTTTACAAATTTAATGTCTACCAGGCGACAGAAAGTGACAGCAAGAGAGTAAGGTGGAGATTAGCACCAACACGCCGTGAGCAAGACAAATGGAATAGAGCTACCAAAGCTGCAACTGACGGCAGTGTAAGTAATTTTCTATATATCACTCTAAATTTATGTCATTTGTATCTAATTTCTAACTTACTGGATATATTTTTCAGCTTATATAGGTGTATAACCTAGGGCGGTGTAGGACATAGAGCTCAATCCATAGTTTACTTTTGAACCCAAAATGGTAACTTGACGATTGTTAATATTAACTACCTACAGGATGTGATGCTTCGGGAATTAAGGAAGTCTCGTGAAAATCCCGAAGTATTGGCTGCTCAATACAGGGAGCAGTATATTAAGGTACTCAACACCGTTGTCTGGTTTGTTTTTGTTCATTAAACGTTATGTAAATCTTACACCTCTTCATTCATTGTGACATTGATCAAATTACATACTTTACTAATTCTGTTCCTAAACTTAATTTGGCTTTTCAGTTAAAGAAGAGGTTGCAAGCGCTTACATTGGGTATAGGTGGCGTTGGTCTTGTTTCAACTTATGTTTCTTATTCTCCTGAGATTGCAGCTAGGTAGGTACTTTGATACTTCTACTACTGATTAACTTGGTTATTTTGAATTGGAGATCCTGCTACCTATACTATCAAATATAGTTAAACTGAGATGATTAAAAGAAACAACTTCTATGAAATAATCAGTGTCATGTTTCCATTGAGGGATATTGGATAAATTCACTGTTGTAATAGATATCAATTATTATTGCTAAAATTCAAAGTTACTGACGCAAGATGAACACTTAGTATACCTCTAAAGAATTTTTTAAGGTTTATTCATGTGTGCTAATTCACACTTTTCTTTCATGTTTTTAGCTTTGGTGCCGGCTTTCTTGGTTCTTTGGCGTATATCCGCATGCTGGGAAGTAGCATGGACTCACTAAACCCAAACGGTGCAAGGGCTGCTATCAAGTAATCTATAGTTGATAGATTTACTATGCAGAATTTAATTTCTTCAGTAAACAACTATTTGATAGTCAAGTGTGAAGTTTCTATTTTTTTCTCGGTAATATTTGAAGTTTCCGAAAGAGTTTAATAACTATTTTGCTAACAAATTTTAAACATGCATATAATTATATTTCATCTTTCGATATTATTCAAGATGTGAACAGGGAGAAATATATTATGGTAAAATATGCTGGGGTGTCTATATAAATTTAATGTAGGGTATAGTCATTAATAATTATACTTGTGAGCGTGTATAGTCATCTGCACATGTGAGAACACTTGTTAGGCATAGTGATCACTTGCACTGTTATAGCCATGAACATTGTTTCATTTTTCACGTTGTTCGTTGGCATAGATAACAGAGGCTTAACAACTTGTGGATGTTAATTGCAGGGGAGCAATTGGGCAGCCAAGATTACTGGTTCCTGTTGTATTGGTTATGATTTATAATCGATGGAATGCGTAAGTCCTCTTTTGATATGCGATTGGAGCAATTACTATTCTATTAATGAAGGCAATAGAGTGAATGAGAGTTAAGAATGGTAACTCAGATTTAATAAATAGGAATGAGAATTAAGAATGGTAATTCAAATTTAATATATAAGAGTGGATTCTTTTAAATTTTGTTTCATTAACCTAGCTTTAGTTTCTCCAAAACCTAGAATATTGGTTAAACTCGGTGTTTTAACTGCTTAACAAGGCTGTTTCAATGCAGGATTCTTGTTCCAGAATATGGAATTATGCACTTAGAATTGATACCAATGCTAGTTGGTTTTTTCACATACAAGATTGCAACTTTTGCACAAGCTATAGAGGAGGTGATTACTGTTGCATCAAAGGACCTAAATATATCGACCAAAGACTAA

Protein sequence

>MS.gene73811.t1

MGIMNYYNCVTCAATPMSQDSSSSSLAPNPRQTKVILPNKKPMKWSTGMAPGDYGGPPTTTKLRKYWGGGDPDPLASDDYLWNKDFVPHFERMIQPPEQSSPSKEVPSGFLSLNRVMSLDSMEVDLSKELSAPVVQQQIETPIIATESDSKRVRWRLAPTRREQDKWNRATKAATDGSDVMLRELRKSRENPEVLAAQYREQYIKLKKRLQALTLGIGGVGLVSTYVSYSPEIAASFGAGFLGSLAYIRMLGSSMDSLNPNGARAAIKGAIGQPRLLVPVVLVMIYNRWNAILVPEYGIMHLELIPMLVGFFTYKIATFAQAIEEVITVASKDLNISTKD