Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75435.t1 | XP_003602025.2 | 95.2 | 694 | 30 | 1 | 1 | 691 | 1 | 694 | 0.00E+00 | 1319.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75435.t1 | Q9CAP8 | 72.9 | 694 | 181 | 3 | 1 | 690 | 1 | 691 | 1.2e-307 | 1056.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75435.t1 | G7J4F3 | 95.2 | 694 | 30 | 1 | 1 | 691 | 1 | 694 | 0.0e+00 | 1319.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057165 | MS.gene75435 | 0.820046 | 8.43E-53 | -1.69E-46 |
MS.gene058027 | MS.gene75435 | 0.830362 | 3.06E-55 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75435.t1 | MTR_3g087980 | 97.695 | 694 | 13 | 1 | 1 | 691 | 1 | 694 | 0.0 | 1391 |
MS.gene75435.t1 | MTR_1g030290 | 76.115 | 695 | 161 | 3 | 1 | 690 | 1 | 695 | 0.0 | 1105 |
MS.gene75435.t1 | MTR_3g082660 | 61.151 | 695 | 263 | 3 | 3 | 690 | 33 | 727 | 0.0 | 889 |
MS.gene75435.t1 | MTR_1g104810 | 36.013 | 597 | 357 | 8 | 100 | 691 | 43 | 619 | 7.44e-118 | 367 |
MS.gene75435.t1 | MTR_1g104810 | 35.257 | 641 | 376 | 10 | 56 | 691 | 80 | 686 | 1.70e-117 | 368 |
MS.gene75435.t1 | MTR_5g009350 | 32.253 | 648 | 391 | 15 | 55 | 689 | 42 | 654 | 6.80e-102 | 326 |
MS.gene75435.t1 | MTR_5g009350 | 32.449 | 641 | 385 | 15 | 55 | 682 | 42 | 647 | 7.88e-101 | 323 |
MS.gene75435.t1 | MTR_7g109830 | 32.669 | 652 | 385 | 14 | 56 | 691 | 41 | 654 | 5.59e-100 | 321 |
MS.gene75435.t1 | MTR_5g009360 | 32.099 | 648 | 392 | 15 | 55 | 689 | 42 | 654 | 3.65e-99 | 319 |
MS.gene75435.t1 | MTR_1g086600 | 31.085 | 682 | 392 | 15 | 37 | 689 | 44 | 676 | 9.06e-93 | 303 |
MS.gene75435.t1 | MTR_4g068670 | 31.379 | 631 | 377 | 17 | 78 | 689 | 58 | 651 | 1.80e-92 | 301 |
MS.gene75435.t1 | MTR_8g099420 | 30.556 | 648 | 404 | 12 | 54 | 689 | 42 | 655 | 2.27e-92 | 301 |
MS.gene75435.t1 | MTR_1g034360 | 30.131 | 687 | 411 | 16 | 27 | 689 | 12 | 653 | 2.83e-90 | 295 |
MS.gene75435.t1 | MTR_5g009350 | 32.358 | 547 | 323 | 14 | 55 | 588 | 42 | 554 | 7.22e-84 | 276 |
MS.gene75435.t1 | MTR_5g009360 | 33.892 | 537 | 317 | 14 | 166 | 689 | 17 | 528 | 9.10e-84 | 275 |
MS.gene75435.t1 | MTR_5g009350 | 32.072 | 555 | 330 | 14 | 55 | 596 | 42 | 562 | 9.17e-83 | 273 |
MS.gene75435.t1 | MTR_3g084470 | 25.193 | 647 | 384 | 21 | 106 | 689 | 105 | 714 | 8.32e-38 | 150 |
MS.gene75435.t1 | MTR_3g084450 | 24.186 | 645 | 396 | 15 | 106 | 689 | 107 | 719 | 3.25e-37 | 149 |
MS.gene75435.t1 | MTR_8g083170 | 25.039 | 643 | 395 | 19 | 106 | 689 | 109 | 723 | 1.76e-34 | 140 |
MS.gene75435.t1 | MTR_3g084450 | 24.949 | 489 | 289 | 13 | 248 | 689 | 54 | 511 | 7.28e-29 | 121 |
MS.gene75435.t1 | MTR_4g077900 | 30.088 | 339 | 166 | 14 | 248 | 576 | 121 | 398 | 1.99e-25 | 110 |
MS.gene75435.t1 | MTR_5g027500 | 27.329 | 483 | 258 | 20 | 115 | 576 | 78 | 488 | 6.69e-25 | 110 |
MS.gene75435.t1 | MTR_1g026310 | 27.941 | 340 | 174 | 13 | 248 | 578 | 205 | 482 | 6.70e-21 | 97.4 |
MS.gene75435.t1 | MTR_5g027480 | 24.236 | 491 | 279 | 18 | 106 | 581 | 68 | 480 | 1.12e-19 | 93.6 |
MS.gene75435.t1 | MTR_3g035130 | 24.211 | 475 | 281 | 14 | 106 | 574 | 32 | 433 | 2.44e-17 | 85.9 |
MS.gene75435.t1 | MTR_3g035130 | 24.000 | 475 | 282 | 14 | 106 | 574 | 32 | 433 | 3.16e-17 | 85.9 |
MS.gene75435.t1 | MTR_3g064420 | 27.419 | 372 | 169 | 14 | 254 | 605 | 194 | 484 | 1.53e-15 | 80.9 |
MS.gene75435.t1 | MTR_5g076220 | 29.804 | 255 | 133 | 9 | 438 | 679 | 322 | 543 | 1.44e-14 | 77.4 |
MS.gene75435.t1 | MTR_5g076240 | 49.398 | 83 | 36 | 3 | 497 | 579 | 391 | 467 | 2.41e-13 | 73.6 |
MS.gene75435.t1 | MTR_5g008800 | 27.326 | 344 | 175 | 14 | 248 | 578 | 182 | 463 | 6.87e-13 | 72.0 |
MS.gene75435.t1 | MTR_4g057730 | 27.547 | 265 | 147 | 12 | 396 | 646 | 284 | 517 | 1.41e-12 | 71.2 |
MS.gene75435.t1 | MTR_2g095510 | 28.512 | 242 | 131 | 11 | 416 | 646 | 304 | 514 | 1.45e-12 | 71.2 |
MS.gene75435.t1 | MTR_1g063110 | 28.191 | 188 | 113 | 8 | 404 | 580 | 296 | 472 | 1.68e-12 | 70.9 |
MS.gene75435.t1 | MTR_2g105570 | 27.530 | 247 | 149 | 10 | 416 | 643 | 310 | 545 | 6.20e-12 | 68.9 |
MS.gene75435.t1 | MTR_5g076200 | 30.601 | 183 | 97 | 6 | 497 | 679 | 391 | 543 | 6.90e-12 | 68.9 |
MS.gene75435.t1 | MTR_0161s0050 | 29.947 | 187 | 101 | 6 | 497 | 683 | 393 | 549 | 7.60e-12 | 68.9 |
MS.gene75435.t1 | MTR_1g063120 | 30.488 | 164 | 101 | 6 | 422 | 580 | 321 | 476 | 2.12e-11 | 67.4 |
MS.gene75435.t1 | MTR_4g057730 | 28.283 | 198 | 114 | 10 | 396 | 580 | 284 | 466 | 2.32e-11 | 67.0 |
MS.gene75435.t1 | MTR_5g007640 | 28.571 | 245 | 150 | 11 | 416 | 644 | 349 | 584 | 2.33e-11 | 67.4 |
MS.gene75435.t1 | MTR_2g095510 | 30.719 | 153 | 82 | 8 | 416 | 558 | 304 | 442 | 3.11e-11 | 66.6 |
MS.gene75435.t1 | MTR_8g074040 | 26.377 | 345 | 177 | 14 | 248 | 578 | 226 | 507 | 3.69e-11 | 66.6 |
MS.gene75435.t1 | MTR_8g074040 | 26.377 | 345 | 177 | 14 | 248 | 578 | 108 | 389 | 4.25e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene75435.t1 | AT1G77590 | 72.911 | 694 | 181 | 3 | 1 | 690 | 1 | 691 | 0.0 | 1082 |
MS.gene75435.t1 | AT2G04350 | 64.190 | 673 | 235 | 2 | 24 | 690 | 48 | 720 | 0.0 | 904 |
MS.gene75435.t1 | AT2G04350 | 64.190 | 673 | 235 | 2 | 24 | 690 | 48 | 720 | 0.0 | 904 |
MS.gene75435.t1 | AT1G77590 | 75.503 | 547 | 128 | 2 | 147 | 690 | 2 | 545 | 0.0 | 880 |
MS.gene75435.t1 | AT5G27600 | 36.333 | 600 | 351 | 12 | 100 | 691 | 113 | 689 | 2.65e-119 | 372 |
MS.gene75435.t1 | AT3G05970 | 35.524 | 639 | 373 | 11 | 56 | 689 | 83 | 687 | 8.35e-115 | 361 |
MS.gene75435.t1 | AT4G23850 | 32.416 | 654 | 384 | 17 | 54 | 689 | 42 | 655 | 6.62e-100 | 321 |
MS.gene75435.t1 | AT1G64400 | 32.243 | 642 | 391 | 13 | 61 | 691 | 49 | 657 | 1.23e-99 | 320 |
MS.gene75435.t1 | AT4G11030 | 31.685 | 647 | 398 | 14 | 54 | 689 | 42 | 655 | 2.31e-95 | 309 |
MS.gene75435.t1 | AT2G47240 | 31.433 | 649 | 397 | 12 | 56 | 691 | 41 | 654 | 5.64e-94 | 305 |
MS.gene75435.t1 | AT2G47240 | 31.433 | 649 | 397 | 12 | 56 | 691 | 41 | 654 | 5.64e-94 | 305 |
MS.gene75435.t1 | AT2G47240 | 31.433 | 649 | 397 | 12 | 56 | 691 | 41 | 654 | 5.64e-94 | 305 |
MS.gene75435.t1 | AT2G47240 | 32.190 | 612 | 381 | 11 | 93 | 691 | 5 | 595 | 8.94e-93 | 300 |
MS.gene75435.t1 | AT1G49430 | 31.631 | 607 | 379 | 10 | 100 | 691 | 74 | 659 | 1.04e-92 | 302 |
MS.gene75435.t1 | AT1G49430 | 32.080 | 452 | 271 | 10 | 100 | 536 | 74 | 504 | 3.59e-60 | 211 |
MS.gene75435.t1 | AT3G23790 | 25.816 | 643 | 384 | 24 | 107 | 689 | 112 | 721 | 1.30e-38 | 153 |
MS.gene75435.t1 | AT4G14070 | 25.078 | 642 | 383 | 21 | 106 | 690 | 127 | 727 | 5.08e-36 | 145 |
MS.gene75435.t1 | AT4G19010 | 29.794 | 339 | 171 | 14 | 248 | 578 | 205 | 484 | 1.30e-25 | 112 |
MS.gene75435.t1 | AT1G20500 | 27.928 | 333 | 176 | 11 | 248 | 576 | 198 | 470 | 4.33e-23 | 104 |
MS.gene75435.t1 | AT1G20510 | 28.446 | 341 | 174 | 12 | 248 | 580 | 190 | 468 | 2.46e-21 | 98.2 |
MS.gene75435.t1 | AT1G20510 | 28.783 | 337 | 170 | 12 | 248 | 576 | 190 | 464 | 4.06e-21 | 98.2 |
MS.gene75435.t1 | AT1G20510 | 28.213 | 319 | 160 | 11 | 248 | 558 | 190 | 447 | 3.05e-19 | 91.7 |
MS.gene75435.t1 | AT1G20480 | 27.463 | 335 | 174 | 13 | 248 | 576 | 214 | 485 | 1.99e-17 | 86.7 |
MS.gene75435.t1 | AT1G75960 | 26.697 | 442 | 215 | 17 | 248 | 670 | 185 | 536 | 7.79e-17 | 84.7 |
MS.gene75435.t1 | AT5G16340 | 27.594 | 453 | 226 | 19 | 248 | 686 | 186 | 550 | 1.63e-16 | 83.6 |
MS.gene75435.t1 | AT5G38120 | 26.488 | 336 | 175 | 15 | 248 | 576 | 200 | 470 | 4.37e-16 | 82.4 |
MS.gene75435.t1 | AT5G38120 | 26.488 | 336 | 175 | 15 | 248 | 576 | 200 | 470 | 5.13e-16 | 81.6 |
MS.gene75435.t1 | AT5G38120 | 26.488 | 336 | 175 | 15 | 248 | 576 | 200 | 470 | 5.13e-16 | 81.6 |
MS.gene75435.t1 | AT5G38120 | 26.488 | 336 | 175 | 15 | 248 | 576 | 200 | 470 | 5.65e-16 | 82.0 |
MS.gene75435.t1 | AT1G21540 | 28.863 | 343 | 164 | 14 | 251 | 578 | 191 | 468 | 5.90e-16 | 82.0 |
MS.gene75435.t1 | AT5G16370 | 30.362 | 359 | 157 | 14 | 248 | 585 | 186 | 472 | 1.16e-15 | 80.9 |
MS.gene75435.t1 | AT4G05160 | 28.033 | 239 | 136 | 9 | 416 | 646 | 309 | 519 | 7.11e-14 | 75.5 |
MS.gene75435.t1 | AT1G21530 | 26.531 | 343 | 172 | 13 | 251 | 578 | 188 | 465 | 1.35e-13 | 74.3 |
MS.gene75435.t1 | AT3G48990 | 28.358 | 201 | 124 | 6 | 385 | 578 | 249 | 436 | 4.36e-13 | 72.8 |
MS.gene75435.t1 | AT1G77240 | 48.780 | 82 | 37 | 2 | 497 | 578 | 390 | 466 | 4.60e-13 | 72.8 |
MS.gene75435.t1 | AT1G62940 | 25.562 | 356 | 177 | 15 | 245 | 581 | 179 | 465 | 1.75e-12 | 70.9 |
MS.gene75435.t1 | AT1G21530 | 34.839 | 155 | 79 | 6 | 438 | 578 | 317 | 463 | 2.31e-12 | 70.5 |
MS.gene75435.t1 | AT3G21240 | 27.344 | 256 | 137 | 13 | 416 | 643 | 316 | 550 | 1.23e-11 | 68.2 |
MS.gene75435.t1 | AT1G65880 | 30.233 | 258 | 134 | 11 | 419 | 657 | 305 | 535 | 3.69e-11 | 66.6 |
MS.gene75435.t1 | AT3G21230 | 26.423 | 246 | 153 | 10 | 416 | 644 | 331 | 565 | 7.15e-11 | 65.9 |
Find 167 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGGTGGTGCACCCCTTTC+TGG | 0.130378 | 3.3:+73272204 | MS.gene75435:CDS |
TGGTAGCTGGTTTGGTGCTT+GGG | 0.253560 | 3.3:+73272110 | MS.gene75435:CDS |
TTCTCCCAACGAAGCATAAA+TGG | 0.267608 | 3.3:-73269734 | None:intergenic |
TTAACATATGTGGAAGGTTT+TGG | 0.268361 | 3.3:-73273944 | None:intergenic |
CCGCAAACGCCGCGGCTTAC+CGG | 0.287825 | 3.3:+73269213 | MS.gene75435:CDS |
AGAATGGTTTATTGCATTGC+AGG | 0.308254 | 3.3:+73269570 | MS.gene75435:CDS |
GCCGCGGCGTTTGCGGTTGT+TGG | 0.320837 | 3.3:-73269206 | None:intergenic |
CTCATCCTGCATTGGATGAA+TGG | 0.328825 | 3.3:+73277868 | MS.gene75435:CDS |
GATGTATCGGTTAGAGTTAA+TGG | 0.330847 | 3.3:-73271818 | None:intergenic |
CAGGTTGAGGCAGTTCTTCT+TGG | 0.331599 | 3.3:+73277771 | MS.gene75435:intron |
CTGGTTTGGTGCTTGGGGAT+TGG | 0.338123 | 3.3:+73272116 | MS.gene75435:CDS |
CGAAGGATGCAAGCGATTAA+TGG | 0.338298 | 3.3:+73272090 | MS.gene75435:CDS |
TGAGATCATTGATAGGAAAA+AGG | 0.339564 | 3.3:+73277638 | MS.gene75435:CDS |
TGCTGTAAAGGTTGATGAAC+GGG | 0.340717 | 3.3:+73277560 | MS.gene75435:intron |
ACATCCTTTGTCCCAAGTTC+AGG | 0.343319 | 3.3:-73271597 | None:intergenic |
ATGGTAGCTGGTTTGGTGCT+TGG | 0.343553 | 3.3:+73272109 | MS.gene75435:CDS |
AGCTCTTCTTGTCTTCAAAA+AGG | 0.345654 | 3.3:+73272143 | MS.gene75435:CDS |
AAATCACTTGTAAATATTGC+TGG | 0.347751 | 3.3:+73271119 | MS.gene75435:CDS |
TCTTCTTGGCAGCCCCTTTG+TGG | 0.359980 | 3.3:+73277785 | MS.gene75435:CDS |
GCTTCTGGTTTGGCGAAGAT+TGG | 0.360072 | 3.3:+73269502 | MS.gene75435:CDS |
AGACCATATGCTTGACCTAT+TGG | 0.362678 | 3.3:-73273854 | None:intergenic |
TGAATTGATCTCACGTGAAA+TGG | 0.368695 | 3.3:+73269384 | MS.gene75435:CDS |
GCGATTAATGGTAGCTGGTT+TGG | 0.369688 | 3.3:+73272102 | MS.gene75435:CDS |
TCATCCTGCATTGGATGAAT+GGG | 0.370904 | 3.3:+73277869 | MS.gene75435:CDS |
GGCTGTTTCTCATCCTGCAT+TGG | 0.384325 | 3.3:+73277860 | MS.gene75435:CDS |
GCTGCTGTTGGAGGCTGTAT+AGG | 0.394725 | 3.3:+73271785 | MS.gene75435:CDS |
TGTTTGTTCAGGCTTGCTTC+CGG | 0.400584 | 3.3:+73269692 | MS.gene75435:intron |
AGATTCATCAACATTTGTCT+TGG | 0.406370 | 3.3:+73272237 | MS.gene75435:CDS |
ACAATGAACGCCTACATTGC+CGG | 0.408215 | 3.3:+73269145 | None:intergenic |
CCGGTAAGCCGCGGCGTTTG+CGG | 0.410043 | 3.3:-73269213 | None:intergenic |
GTGAAAATTGTTCCTGAACT+TGG | 0.412273 | 3.3:+73271585 | MS.gene75435:CDS |
GATTCATCAACATTTGTCTT+GGG | 0.413381 | 3.3:+73272238 | MS.gene75435:CDS |
AACTGCAACATCAGCTGAAA+GGG | 0.414993 | 3.3:-73271285 | None:intergenic |
CCTCGTGGTGAAATAGTAAT+TGG | 0.418609 | 3.3:+73275137 | MS.gene75435:CDS |
GTAGTTGAATATCCACCTTC+AGG | 0.419524 | 3.3:-73275101 | None:intergenic |
GGAAGCAAAGAAGGCTCGTC+TGG | 0.420989 | 3.3:+73278609 | MS.gene75435:intron |
TAGAATTTGTTTGCTGCTGT+TGG | 0.423659 | 3.3:+73271773 | MS.gene75435:intron |
AACATAATGTTGTCCACAAA+GGG | 0.431416 | 3.3:-73277798 | None:intergenic |
TTCATCTTGGAGAGTATCAA+TGG | 0.436487 | 3.3:+73269440 | MS.gene75435:CDS |
GCCGACGTCGGCGGCGAACC+TGG | 0.444746 | 3.3:+73269235 | MS.gene75435:CDS |
AAAACCTTCCACATATGTTA+AGG | 0.446570 | 3.3:+73273946 | MS.gene75435:CDS |
GACCCATGGACTCCTGAGAC+TGG | 0.453555 | 3.3:+73278670 | MS.gene75435:CDS |
AATTTGTTTGCTGCTGTTGG+AGG | 0.455909 | 3.3:+73271776 | MS.gene75435:CDS |
GTTACCATTTATGCTTCGTT+GGG | 0.457080 | 3.3:+73269730 | MS.gene75435:CDS |
TGTTACCATTTATGCTTCGT+TGG | 0.470259 | 3.3:+73269729 | MS.gene75435:CDS |
TCTTTGTGAGTCACCAGAAA+GGG | 0.471719 | 3.3:-73272217 | None:intergenic |
TTTGTGTCATTCATTGAATG+AGG | 0.476608 | 3.3:+73269762 | MS.gene75435:CDS |
CCGCATCTGCTCAGCATGGA+TGG | 0.477689 | 3.3:+73271198 | MS.gene75435:CDS |
GCAGTAACTAGGCCAGTCTC+AGG | 0.478808 | 3.3:-73278682 | None:intergenic |
GTTGCCTTGAGATCATTGAT+AGG | 0.484550 | 3.3:+73277631 | MS.gene75435:CDS |
TTAAATTGCTTTCTGACCCA+TGG | 0.484569 | 3.3:+73278656 | MS.gene75435:CDS |
GGTTCGCCGCCGACGTCGGC+CGG | 0.487708 | 3.3:-73269232 | None:intergenic |
TGGTTGCGGACCGCGAAACC+AGG | 0.488283 | 3.3:-73269253 | None:intergenic |
AAGTTCGAGAAGCTTCATCT+TGG | 0.494487 | 3.3:+73269427 | MS.gene75435:CDS |
TCTTAAGAGCTGCAGTAACT+AGG | 0.495063 | 3.3:-73278693 | None:intergenic |
AGGCCAGTCTCAGGAGTCCA+TGG | 0.497067 | 3.3:-73278673 | None:intergenic |
GGTAGCTGGTTTGGTGCTTG+GGG | 0.497596 | 3.3:+73272111 | MS.gene75435:CDS |
CCTTCCCAGAGTGAAGTTAA+CGG | 0.498435 | 3.3:-73269289 | None:intergenic |
CGAACACGATCAAGAATTGC+TGG | 0.500340 | 3.3:-73271908 | None:intergenic |
GAGTATCAATGGGTTACGTA+TGG | 0.500959 | 3.3:+73269451 | MS.gene75435:CDS |
TGCAAGCGATTAATGGTAGC+TGG | 0.501413 | 3.3:+73272097 | MS.gene75435:CDS |
GGTTGTTGGAGTTGCGGAAG+AGG | 0.502140 | 3.3:-73269192 | None:intergenic |
AAGCCTTTCAACATCAGAAA+AGG | 0.502433 | 3.3:-73271231 | None:intergenic |
TGAAAATTGTTCCTGAACTT+GGG | 0.504500 | 3.3:+73271586 | MS.gene75435:CDS |
CGCGGCTTACCGGCCGACGT+CGG | 0.506121 | 3.3:+73269223 | MS.gene75435:CDS |
GAAATGGAAACTTCTTCTGA+TGG | 0.507585 | 3.3:+73269400 | MS.gene75435:CDS |
AAGTTACTGTGTGGCACTTG+TGG | 0.512481 | 3.3:+73277839 | MS.gene75435:CDS |
AATAACTACCTTAACATATG+TGG | 0.514991 | 3.3:-73273954 | None:intergenic |
GGCTTACCGGCCGACGTCGG+CGG | 0.515433 | 3.3:+73269226 | MS.gene75435:CDS |
CATCTCCGTTAACTTCACTC+TGG | 0.517195 | 3.3:+73269284 | MS.gene75435:CDS |
GAGATGTGACGCGGTGGTTG+CGG | 0.517808 | 3.3:-73269267 | None:intergenic |
TACGACCACCCAGAATTGCT+TGG | 0.517811 | 3.3:-73272167 | None:intergenic |
AGGTTGATGAACGGGGAATG+AGG | 0.520598 | 3.3:+73277568 | MS.gene75435:intron |
TGAGCAGATGCGGCATCAGA+TGG | 0.520910 | 3.3:-73271188 | None:intergenic |
CGGCGGCGAACCTGGTTTCG+CGG | 0.524349 | 3.3:+73269243 | MS.gene75435:CDS |
TGTTCCTGAACTTGGGACAA+AGG | 0.527275 | 3.3:+73271593 | MS.gene75435:CDS |
AATTCAAGAATATGAGCCAT+TGG | 0.527773 | 3.3:-73271636 | None:intergenic |
GCATGGAGAATATGTGTCCC+TGG | 0.530319 | 3.3:+73277677 | MS.gene75435:CDS |
GCTCCAATAGGTCAAGCATA+TGG | 0.531681 | 3.3:+73273851 | MS.gene75435:CDS |
AACGATGAGGCCGGCAATGT+AGG | 0.531894 | 3.3:-73269155 | None:intergenic |
AGGGGTAAATCAGCCTCGAT+AGG | 0.532424 | 3.3:-73271266 | None:intergenic |
CGTGCATGCATACCTTTCCC+AGG | 0.533958 | 3.3:-73277695 | None:intergenic |
CGCTTGCATCCTTCGTGCAT+AGG | 0.534962 | 3.3:-73272082 | None:intergenic |
GTCATACAGGTAAATGCAAA+GGG | 0.535324 | 3.3:+73272030 | MS.gene75435:intron |
CGACGTCGGCCGGTAAGCCG+CGG | 0.536999 | 3.3:-73269222 | None:intergenic |
ATATTTGCAGGAAGCAAAGA+AGG | 0.537806 | 3.3:+73278600 | MS.gene75435:intron |
ATCTTTGTGAGTCACCAGAA+AGG | 0.538336 | 3.3:-73272218 | None:intergenic |
GGTGGTCCAAGTGTCACTCT+TGG | 0.544551 | 3.3:+73275158 | MS.gene75435:CDS |
ATGCTGACACTAGAGAAGAA+TGG | 0.546458 | 3.3:+73269554 | MS.gene75435:CDS |
TAACTGCAACATCAGCTGAA+AGG | 0.546955 | 3.3:-73271286 | None:intergenic |
ATTCTTGATCGTGTTCGTGA+TGG | 0.547019 | 3.3:+73271914 | MS.gene75435:CDS |
ATGTACACAAGTGGAAGTAC+AGG | 0.547355 | 3.3:+73271311 | MS.gene75435:CDS |
CAAGTGATTTCAATTCTTTG+CGG | 0.548594 | 3.3:-73271106 | None:intergenic |
GAAGCCCATTCATCCAATGC+AGG | 0.549662 | 3.3:-73277873 | None:intergenic |
ACCAGGTTCGCCGCCGACGT+CGG | 0.550810 | 3.3:-73269236 | None:intergenic |
CAGTTAATCGACTGGCCTGA+AGG | 0.550964 | 3.3:+73275086 | MS.gene75435:intron |
GGTGCATGCATCACTTGTAA+AGG | 0.552621 | 3.3:+73277959 | MS.gene75435:CDS |
AGTATCAATGGGTTACGTAT+GGG | 0.553654 | 3.3:+73269452 | MS.gene75435:CDS |
CCATCCATGCTGAGCAGATG+CGG | 0.554020 | 3.3:-73271198 | None:intergenic |
TCATCTTGGAGAGTATCAAT+GGG | 0.554276 | 3.3:+73269441 | MS.gene75435:CDS |
CAACATAATGTTGTCCACAA+AGG | 0.555949 | 3.3:-73277799 | None:intergenic |
GATGAATGGGCTTCAAAGCA+AGG | 0.558170 | 3.3:+73277882 | MS.gene75435:CDS |
CTCACGGAGACTTGTGCTGG+TGG | 0.563040 | 3.3:+73273875 | MS.gene75435:CDS |
GTTGGAGGCTGTATAGGATA+CGG | 0.563483 | 3.3:+73271791 | MS.gene75435:CDS |
TTGCTGTAAAGGTTGATGAA+CGG | 0.570020 | 3.3:+73277559 | MS.gene75435:intron |
ACTATTTCACCACGAGGCAT+CGG | 0.570238 | 3.3:-73275131 | None:intergenic |
GACGAGAGGAACGATGAGGC+CGG | 0.570309 | 3.3:-73269164 | None:intergenic |
ATCTCCGTTAACTTCACTCT+GGG | 0.571471 | 3.3:+73269285 | MS.gene75435:CDS |
GATACTTCTGTTGGCCGTGT+AGG | 0.572271 | 3.3:+73273917 | MS.gene75435:CDS |
GTAGGTAGATTTCATGCGGA+TGG | 0.573162 | 3.3:+73277609 | MS.gene75435:CDS |
AGAATATGTGTCCCTGGGAA+AGG | 0.579752 | 3.3:+73277683 | MS.gene75435:CDS |
CGTGGTGAAATAGTAATTGG+TGG | 0.584455 | 3.3:+73275140 | MS.gene75435:CDS |
GGTCTCACGGAGACTTGTGC+TGG | 0.586067 | 3.3:+73273872 | MS.gene75435:CDS |
GGGGTAAATCAGCCTCGATA+GGG | 0.587669 | 3.3:-73271265 | None:intergenic |
GGTCATACAGGTAAATGCAA+AGG | 0.587700 | 3.3:+73272029 | MS.gene75435:intron |
GTTTGCGGTTGTTGGAGTTG+CGG | 0.591559 | 3.3:-73269198 | None:intergenic |
TGGAAGTACAGGCTTGCCTA+AGG | 0.592424 | 3.3:+73271322 | MS.gene75435:CDS |
TGTTGGAGTTGCGGAAGAGG+AGG | 0.592784 | 3.3:-73269189 | None:intergenic |
TAACAACAGTCACATTTCTC+CGG | 0.594139 | 3.3:-73269711 | None:intergenic |
AAATAACCAAGAGTGACACT+TGG | 0.595026 | 3.3:-73275164 | None:intergenic |
CATGGAGAATATGTGTCCCT+GGG | 0.602792 | 3.3:+73277678 | MS.gene75435:CDS |
GAGCAGATGCGGCATCAGAT+GGG | 0.603021 | 3.3:-73271187 | None:intergenic |
GACATAGTTAAACTGCAGCA+TGG | 0.605290 | 3.3:+73277660 | MS.gene75435:CDS |
TTAATCGACTGGCCTGAAGG+TGG | 0.607384 | 3.3:+73275089 | MS.gene75435:CDS |
GAGGTTACAACTGTGATTTG+TGG | 0.608937 | 3.3:+73271083 | MS.gene75435:CDS |
CCGTTAACTTCACTCTGGGA+AGG | 0.609584 | 3.3:+73269289 | MS.gene75435:CDS |
GCAGTTATAATGTACACAAG+TGG | 0.611172 | 3.3:+73271302 | MS.gene75435:CDS |
CAAAGAAGAAACAGTGAAGG+AGG | 0.611493 | 3.3:+73277938 | MS.gene75435:CDS |
AGGTCAAGCATATGGTCTCA+CGG | 0.613030 | 3.3:+73273859 | MS.gene75435:CDS |
TGCATTGATGCCAACTGTGT+TGG | 0.613469 | 3.3:+73271877 | MS.gene75435:CDS |
GGCCAGTCTCAGGAGTCCAT+GGG | 0.614285 | 3.3:-73278672 | None:intergenic |
TGCAAAGGGAGGATTATCAA+AGG | 0.615510 | 3.3:+73272044 | MS.gene75435:CDS |
TCAATGGGTTACGTATGGGA+AGG | 0.616385 | 3.3:+73269456 | MS.gene75435:CDS |
GGAATGAGGTGGTTCTACAC+TGG | 0.617625 | 3.3:+73277582 | MS.gene75435:CDS |
ACTACCTTAACATATGTGGA+AGG | 0.619062 | 3.3:-73273950 | None:intergenic |
GGTACAGCTACCAACACAGT+TGG | 0.622382 | 3.3:-73271887 | None:intergenic |
TCACGGAGACTTGTGCTGGT+GGG | 0.623476 | 3.3:+73273876 | MS.gene75435:CDS |
CACAGTTGGCATCAATGCAG+TGG | 0.624128 | 3.3:-73271873 | None:intergenic |
ATATCTAGCATACTTACCAA+TGG | 0.624262 | 3.3:+73271620 | MS.gene75435:CDS |
GATGCCGCATCTGCTCAGCA+TGG | 0.624263 | 3.3:+73271194 | MS.gene75435:CDS |
TATTCTTGAATTAATAGCTG+AGG | 0.625070 | 3.3:+73271647 | MS.gene75435:CDS |
AAAGACAAGAGAGTCTTACA+AGG | 0.625891 | 3.3:+73275199 | MS.gene75435:CDS |
GCTGTAAAGGTTGATGAACG+GGG | 0.640469 | 3.3:+73277561 | MS.gene75435:intron |
TCCAACAACCGCAAACGCCG+CGG | 0.640799 | 3.3:+73269205 | MS.gene75435:CDS |
CAGCAAAGAAGAAACAGTGA+AGG | 0.640861 | 3.3:+73277935 | MS.gene75435:CDS |
CTTTGTGAGTCACCAGAAAG+GGG | 0.655656 | 3.3:-73272216 | None:intergenic |
AATCATGATAGATTGTTACT+CGG | 0.656134 | 3.3:+73269355 | MS.gene75435:CDS |
TCTAACCGATACATCAAACA+AGG | 0.656429 | 3.3:+73271826 | MS.gene75435:CDS |
TTGATTTAGCCTATGCACGA+AGG | 0.657974 | 3.3:+73272073 | MS.gene75435:CDS |
ACTGCAACATCAGCTGAAAG+GGG | 0.666737 | 3.3:-73271284 | None:intergenic |
GTGCATGCATACCTTTCCCA+GGG | 0.668654 | 3.3:-73277694 | None:intergenic |
TGGTAGAGAAAACCCTATCG+AGG | 0.672136 | 3.3:+73271253 | MS.gene75435:CDS |
GGAAGGCGTGACGACACTCG+CGG | 0.672398 | 3.3:+73269306 | MS.gene75435:CDS |
CGGAAGAGGAGGATGACGAG+AGG | 0.672962 | 3.3:-73269178 | None:intergenic |
TGGTTCTACACTGGTGACGT+AGG | 0.683274 | 3.3:+73277591 | MS.gene75435:CDS |
CCAATTACTATTTCACCACG+AGG | 0.684364 | 3.3:-73275137 | None:intergenic |
TGACGTAGGTAGATTTCATG+CGG | 0.690923 | 3.3:+73277605 | MS.gene75435:CDS |
GGACAACATTATGTTGCATG+CGG | 0.691477 | 3.3:+73277806 | MS.gene75435:CDS |
CAGGGTGTGATGATGACACA+TGG | 0.701230 | 3.3:+73271534 | MS.gene75435:intron |
ACTGACTCACCGATGCCTCG+TGG | 0.702074 | 3.3:+73275122 | MS.gene75435:CDS |
ATACAGGTAAATGCAAAGGG+AGG | 0.708230 | 3.3:+73272033 | MS.gene75435:intron |
ACATAATGTTGTCCACAAAG+GGG | 0.710014 | 3.3:-73277797 | None:intergenic |
TTGATGAACGGGGAATGAGG+TGG | 0.714142 | 3.3:+73277571 | MS.gene75435:CDS |
GGATGACGAGAGGAACGATG+AGG | 0.715004 | 3.3:-73269168 | None:intergenic |
TTAACGGAGATGTGACGCGG+TGG | 0.729075 | 3.3:-73269273 | None:intergenic |
AAGTTAACGGAGATGTGACG+CGG | 0.733202 | 3.3:-73269276 | None:intergenic |
AAGGTCCAAGCAATTCTGGG+TGG | 0.739493 | 3.3:+73272162 | MS.gene75435:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 73269148 | 73278777 | 73269148 | ID=MS.gene75435 |
chr3.3 | mRNA | 73269148 | 73278777 | 73269148 | ID=MS.gene75435.t1;Parent=MS.gene75435 |
chr3.3 | exon | 73269148 | 73269591 | 73269148 | ID=MS.gene75435.t1.exon1;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73269148 | 73269591 | 73269148 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73269703 | 73269783 | 73269703 | ID=MS.gene75435.t1.exon2;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73269703 | 73269783 | 73269703 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73271080 | 73271343 | 73271080 | ID=MS.gene75435.t1.exon3;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73271080 | 73271343 | 73271080 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73271537 | 73271668 | 73271537 | ID=MS.gene75435.t1.exon4;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73271537 | 73271668 | 73271537 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73271776 | 73271949 | 73271776 | ID=MS.gene75435.t1.exon5;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73271776 | 73271949 | 73271776 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73272039 | 73272259 | 73272039 | ID=MS.gene75435.t1.exon6;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73272039 | 73272259 | 73272039 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73273850 | 73273967 | 73273850 | ID=MS.gene75435.t1.exon7;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73273850 | 73273967 | 73273850 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73275089 | 73275220 | 73275089 | ID=MS.gene75435.t1.exon8;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73275089 | 73275220 | 73275089 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73277570 | 73277704 | 73277570 | ID=MS.gene75435.t1.exon9;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73277570 | 73277704 | 73277570 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73277774 | 73277980 | 73277774 | ID=MS.gene75435.t1.exon10;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73277774 | 73277980 | 73277774 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
chr3.3 | exon | 73278610 | 73278777 | 73278610 | ID=MS.gene75435.t1.exon11;Parent=MS.gene75435.t1 |
chr3.3 | CDS | 73278610 | 73278777 | 73278610 | ID=cds.MS.gene75435.t1;Parent=MS.gene75435.t1 |
Gene Sequence |
Protein sequence |