Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76834.t1 | XP_013470014.1 | 98.3 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 4.40E-162 | 580.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76834.t1 | Q8VXY4 | 69.9 | 289 | 85 | 2 | 1 | 288 | 1 | 288 | 2.9e-114 | 412.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76834.t1 | A0A072VQH6 | 98.3 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 3.1e-162 | 580.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene76834 | 0.83698 | 6.81E-57 | -1.69E-46 |
| MS.gene049378 | MS.gene76834 | 0.832512 | 9.06E-56 | -1.69E-46 |
| MS.gene049756 | MS.gene76834 | 0.802351 | 5.85E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene76834 | -0.800138 | 1.66E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene76834 | 0.818365 | 2.04E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene76834 | 0.820366 | 7.12E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene76834 | 0.828004 | 1.14E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene76834 | -0.833354 | 5.60E-56 | -1.69E-46 |
| MS.gene050642 | MS.gene76834 | 0.837748 | 4.33E-57 | -1.69E-46 |
| MS.gene050987 | MS.gene76834 | 0.814861 | 1.24E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene76834 | 0.803891 | 2.81E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene76834 | 0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene76834 | 0.849104 | 4.00E-60 | -1.69E-46 |
| MS.gene052176 | MS.gene76834 | 0.839992 | 1.14E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene76834 | 0.806597 | 7.62E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene76834 | 0.807256 | 5.52E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene76834 | -0.802437 | 5.61E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene76834 | 0.812011 | 5.25E-51 | -1.69E-46 |
| MS.gene052954 | MS.gene76834 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene053188 | MS.gene76834 | 0.852116 | 5.70E-61 | -1.69E-46 |
| MS.gene053216 | MS.gene76834 | 0.839598 | 1.44E-57 | -1.69E-46 |
| MS.gene054379 | MS.gene76834 | 0.80854 | 2.95E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene76834 | 0.851544 | 8.28E-61 | -1.69E-46 |
| MS.gene054930 | MS.gene76834 | 0.812822 | 3.49E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene76834 | 0.813222 | 2.85E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene76834 | 0.831849 | 1.32E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene76834 | 0.818677 | 1.73E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene76834 | 0.805579 | 1.25E-49 | -1.69E-46 |
| MS.gene056849 | MS.gene76834 | 0.821085 | 4.87E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene76834 | 0.846263 | 2.42E-59 | -1.69E-46 |
| MS.gene057079 | MS.gene76834 | 0.826212 | 3.07E-54 | -1.69E-46 |
| MS.gene057754 | MS.gene76834 | 0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene76834 | 0.819465 | 1.15E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene76834 | 0.81645 | 5.50E-52 | -1.69E-46 |
| MS.gene059317 | MS.gene76834 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene059710 | MS.gene76834 | 0.818296 | 2.11E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene76834 | 0.816612 | 5.06E-52 | -1.69E-46 |
| MS.gene060084 | MS.gene76834 | 0.838161 | 3.39E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene76834 | 0.930841 | 9.10E-94 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76834.t1 | MTR_1g107045 | 98.264 | 288 | 5 | 0 | 1 | 288 | 1 | 288 | 0.0 | 586 |
| MS.gene76834.t1 | MTR_1g107045 | 95.437 | 263 | 12 | 0 | 1 | 263 | 1 | 263 | 0.0 | 518 |
| MS.gene76834.t1 | MTR_1g107045 | 97.642 | 212 | 5 | 0 | 1 | 212 | 1 | 212 | 3.72e-154 | 429 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76834.t1 | AT4G34270 | 69.896 | 289 | 85 | 2 | 1 | 288 | 1 | 288 | 1.83e-147 | 415 |
Find 66 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCTTCTCTTGCAATTC+TGG | 0.031355 | 1.1:+76741423 | MS.gene76834:CDS |
| GTCTTCCCAATGGAGATTTC+CGG | 0.291418 | 1.1:-76740814 | None:intergenic |
| GTTTCTTCTCTTGCAATTCT+GGG | 0.297974 | 1.1:+76741424 | MS.gene76834:CDS |
| GACATCTCATTTACCAGAAA+TGG | 0.306200 | 1.1:+76740166 | MS.gene76834:CDS |
| GCTTGACAACGGGGAGCTTC+TGG | 0.307643 | 1.1:-76742748 | None:intergenic |
| TTGTACTTCGGGAGAGTTGC+TGG | 0.338555 | 1.1:+76741712 | MS.gene76834:CDS |
| CGTATGCATTGTATATTTGC+TGG | 0.345472 | 1.1:+76741675 | MS.gene76834:CDS |
| CACAAATCCTGTTGTACTTC+GGG | 0.353319 | 1.1:+76741701 | MS.gene76834:CDS |
| GAGGATGAACTCGCTGATAA+TGG | 0.365438 | 1.1:+76741252 | MS.gene76834:CDS |
| ATTCTAAAACATTTGAATAG+TGG | 0.374855 | 1.1:+76740209 | MS.gene76834:CDS |
| AGCTTCTGGCTGATGATGCT+TGG | 0.388817 | 1.1:-76742734 | None:intergenic |
| TGAGTAGTACGCTTGACAAC+GGG | 0.397774 | 1.1:-76742758 | None:intergenic |
| GCCGCAGCAGGAACTTCAAC+AGG | 0.413392 | 1.1:-76740293 | None:intergenic |
| ATAGCACCGCTTCCACAATA+AGG | 0.414929 | 1.1:-76740594 | None:intergenic |
| AAGTTCCTGCTGCGGCGAAA+TGG | 0.423704 | 1.1:+76740300 | MS.gene76834:CDS |
| AAAGAAGCAAACGATGGAAT+TGG | 0.423986 | 1.1:+76739870 | None:intergenic |
| AACTTCCATTTCGCCGCAGC+AGG | 0.427787 | 1.1:-76740305 | None:intergenic |
| CGGCGAAATGGAAGTTTAGA+AGG | 0.438011 | 1.1:+76740312 | MS.gene76834:CDS |
| AGAAATTGATTTAGTTGCAT+TGG | 0.439296 | 1.1:+76740845 | MS.gene76834:CDS |
| TGATTACTCTTGAACGGTTG+AGG | 0.452835 | 1.1:-76740010 | None:intergenic |
| CAACTCTCCCGAAGTACAAC+AGG | 0.458548 | 1.1:-76741708 | None:intergenic |
| TCTAATATCACTTCCTCAAA+GGG | 0.462313 | 1.1:-76740549 | None:intergenic |
| AACGGTTGAGGAGTTGAGAA+TGG | 0.463074 | 1.1:-76739998 | None:intergenic |
| CGGAGAGGCATTCGCATCCA+TGG | 0.465226 | 1.1:+76739949 | MS.gene76834:CDS |
| TTATACGCTGCAGAATCAAA+AGG | 0.466150 | 1.1:-76742707 | None:intergenic |
| ATAGAAAAGTATAGGCTCCT+TGG | 0.468051 | 1.1:-76740871 | None:intergenic |
| AGAGAGTCATGCCAAGCTCT+TGG | 0.468773 | 1.1:+76741402 | MS.gene76834:intron |
| GTCACTTCTTACTGTAAAAG+TGG | 0.472430 | 1.1:+76741278 | MS.gene76834:CDS |
| CTAATACAGCTTAGAGTTGA+CGG | 0.476886 | 1.1:+76741627 | MS.gene76834:intron |
| AAGTCTTCGACGACGGTGGC+CGG | 0.477533 | 1.1:+76739929 | MS.gene76834:CDS |
| AGAATCTACATTTCAAGCTC+TGG | 0.478818 | 1.1:+76741737 | MS.gene76834:CDS |
| ACAAAGATTTCTGAGGAAAC+CGG | 0.482719 | 1.1:+76740795 | MS.gene76834:CDS |
| CATGGATGCGAATGCCTCTC+CGG | 0.483602 | 1.1:-76739948 | None:intergenic |
| CATTTGATGCTTTATGTGGT+TGG | 0.485832 | 1.1:+76740252 | MS.gene76834:CDS |
| ATCTAATATCACTTCCTCAA+AGG | 0.487831 | 1.1:-76740550 | None:intergenic |
| GGCGCTGAAGTCTTCGACGA+CGG | 0.491989 | 1.1:+76739922 | MS.gene76834:CDS |
| GCACAAATCCTGTTGTACTT+CGG | 0.507906 | 1.1:+76741700 | MS.gene76834:CDS |
| AGGAAACCGGAAATCTCCAT+TGG | 0.511936 | 1.1:+76740808 | MS.gene76834:CDS |
| AAAGCATTTGATGCTTTATG+TGG | 0.512477 | 1.1:+76740248 | MS.gene76834:CDS |
| TACAGCCTTATAACTTCAAG+AGG | 0.516728 | 1.1:-76742795 | None:intergenic |
| GAGGCATTCGCATCCATGGC+TGG | 0.517047 | 1.1:+76739953 | MS.gene76834:CDS |
| ACAACGCCTTATTGTGGAAG+CGG | 0.520421 | 1.1:+76740588 | MS.gene76834:CDS |
| AATGTGCAGCAAGCCCTTTG+AGG | 0.520495 | 1.1:+76740536 | MS.gene76834:intron |
| ACCTCATCATAGAAAAGTAT+AGG | 0.526447 | 1.1:-76740879 | None:intergenic |
| CTTCCTTGCAGTCTTCCCAA+TGG | 0.528278 | 1.1:-76740824 | None:intergenic |
| TTTAGTTGCATTGGCATCCA+AGG | 0.540509 | 1.1:+76740854 | MS.gene76834:CDS |
| AAGAGAAGAAACCAAGAGCT+TGG | 0.554191 | 1.1:-76741413 | None:intergenic |
| GTCGAAGACTTCAGCGCCGG+CGG | 0.562344 | 1.1:-76739917 | None:intergenic |
| TACATTTCAAGCTCTGGCTG+CGG | 0.563110 | 1.1:+76741743 | MS.gene76834:CDS |
| TCTCCATTGGGAAGACTGCA+AGG | 0.572211 | 1.1:+76740821 | MS.gene76834:CDS |
| GGAAACCGGAAATCTCCATT+GGG | 0.574133 | 1.1:+76740809 | MS.gene76834:CDS |
| TGAACAGGTGGTGCTATATG+AGG | 0.576020 | 1.1:+76741233 | MS.gene76834:intron |
| TATACGCTGCAGAATCAAAA+GGG | 0.580871 | 1.1:-76742706 | None:intergenic |
| ACATTTACAACGCCTTATTG+TGG | 0.581460 | 1.1:+76740582 | MS.gene76834:CDS |
| TGGAATTGATTACTCTTGAA+CGG | 0.589845 | 1.1:-76740016 | None:intergenic |
| GTCGTCGAAGACTTCAGCGC+CGG | 0.601946 | 1.1:-76739920 | None:intergenic |
| TTCGACGACGGTGGCCGGAG+AGG | 0.613847 | 1.1:+76739934 | MS.gene76834:CDS |
| TTGAGTAGTACGCTTGACAA+CGG | 0.615166 | 1.1:-76742759 | None:intergenic |
| GAGAACGACTTGAAAGCCGC+CGG | 0.625524 | 1.1:+76739901 | MS.gene76834:CDS |
| GAGACTCGATCAACCAGCCA+TGG | 0.626192 | 1.1:-76739966 | None:intergenic |
| ACCTGTTGAAGTTCCTGCTG+CGG | 0.630692 | 1.1:+76740292 | MS.gene76834:CDS |
| GCAGCAGGAACTTCAACAGG+TGG | 0.641693 | 1.1:-76740290 | None:intergenic |
| GCTGAAGTCTTCGACGACGG+TGG | 0.644989 | 1.1:+76739925 | MS.gene76834:CDS |
| GAATGGGACAAAGATTTCTG+AGG | 0.645664 | 1.1:+76740788 | MS.gene76834:intron |
| GAGTAGTACGCTTGACAACG+GGG | 0.687708 | 1.1:-76742757 | None:intergenic |
| ACGCTGCAGAATCAAAAGGG+TGG | 0.704813 | 1.1:-76742703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATGGTATTTAATTTTTTA+TGG | + | chr1.1:76740763-76740782 | MS.gene76834:intron | 10.0% |
| !! | ATTCAACATTAAATTTCAAT+GGG | - | chr1.1:76742374-76742393 | None:intergenic | 15.0% |
| !! | TATTCAACATTAAATTTCAA+TGG | - | chr1.1:76742375-76742394 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTATGGTAGAAT+GGG | + | chr1.1:76740772-76740791 | MS.gene76834:intron | 15.0% |
| !!! | TTTAATTTTTTATGGTAGAA+TGG | + | chr1.1:76740771-76740790 | MS.gene76834:intron | 15.0% |
| !! | AGAAAAAAAAATGCAAGTTT+AGG | - | chr1.1:76741591-76741610 | None:intergenic | 20.0% |
| !! | ATGACTCAAATAAATGAAAA+AGG | - | chr1.1:76740648-76740667 | None:intergenic | 20.0% |
| !! | ATTAAAATGAAAACATAGTG+AGG | - | chr1.1:76742559-76742578 | None:intergenic | 20.0% |
| !! | CATACTTCCAATTAAATTAA+TGG | - | chr1.1:76742339-76742358 | None:intergenic | 20.0% |
| !! | GAAAATTTAGTTAGATTAGT+GGG | - | chr1.1:76742166-76742185 | None:intergenic | 20.0% |
| !! | GAGCATAAACTAAATAATTT+GGG | - | chr1.1:76742296-76742315 | None:intergenic | 20.0% |
| !! | GTATCTACCATTAATTTAAT+TGG | + | chr1.1:76742329-76742348 | MS.gene76834:intron | 20.0% |
| !! | TACTACAAAAAACATTATCA+GGG | - | chr1.1:76740673-76740692 | None:intergenic | 20.0% |
| !! | TATAATATGAGTCTATCATA+AGG | - | chr1.1:76742527-76742546 | None:intergenic | 20.0% |
| !! | TGAGCATAAACTAAATAATT+TGG | - | chr1.1:76742297-76742316 | None:intergenic | 20.0% |
| !! | TTACTACAAAAAACATTATC+AGG | - | chr1.1:76740674-76740693 | None:intergenic | 20.0% |
| !!! | ACTTGCATTTTTTTTTCTTT+TGG | + | chr1.1:76741593-76741612 | MS.gene76834:intron | 20.0% |
| !!! | ATAATGTTTTTTGTAGTAAG+AGG | + | chr1.1:76740675-76740694 | MS.gene76834:intron | 20.0% |
| !!! | ATACATTTTCAGATTTAGTT+CGG | - | chr1.1:76742188-76742207 | None:intergenic | 20.0% |
| !!! | ATTCTAAAACATTTGAATAG+TGG | + | chr1.1:76740209-76740228 | MS.gene76834:CDS | 20.0% |
| !!! | ATTTATATTTTCTTCCTTGA+TGG | + | chr1.1:76741178-76741197 | MS.gene76834:intron | 20.0% |
| !!! | ATTTTTTCCAAGATAACATA+AGG | - | chr1.1:76740519-76740538 | None:intergenic | 20.0% |
| !!! | CAAATTAGTGTTACTTTTTT+AGG | + | chr1.1:76740394-76740413 | MS.gene76834:intron | 20.0% |
| !!! | TACTATTTTAGTATATGAAG+AGG | - | chr1.1:76741460-76741479 | None:intergenic | 20.0% |
| !!! | TCATTGATTAGTTTTTATGA+TGG | + | chr1.1:76740117-76740136 | MS.gene76834:intron | 20.0% |
| ! | AGTTTATGCTCATATCATAA+GGG | + | chr1.1:76742305-76742324 | MS.gene76834:intron | 25.0% |
| ! | ATAGTTTCATTGTCAACTAT+TGG | + | chr1.1:76741817-76741836 | MS.gene76834:intron | 25.0% |
| ! | ATGAAATGTAAATACCATCA+AGG | - | chr1.1:76741195-76741214 | None:intergenic | 25.0% |
| ! | CAATAATTTAGAGATCTCAA+GGG | - | chr1.1:76742429-76742448 | None:intergenic | 25.0% |
| ! | GGAAAATTTAGTTAGATTAG+TGG | - | chr1.1:76742167-76742186 | None:intergenic | 25.0% |
| ! | TAGTTTATGCTCATATCATA+AGG | + | chr1.1:76742304-76742323 | MS.gene76834:intron | 25.0% |
| ! | TAGTTTCATTGTCAACTATT+GGG | + | chr1.1:76741818-76741837 | MS.gene76834:intron | 25.0% |
| ! | TATTGAGATTGAAAAAGAAC+TGG | + | chr1.1:76740614-76740633 | MS.gene76834:CDS | 25.0% |
| ! | TGATTGATTACTTGAATAGT+TGG | + | chr1.1:76741962-76741981 | MS.gene76834:intron | 25.0% |
| !! | AAGTTTAGAAGGTATGAATT+TGG | + | chr1.1:76740323-76740342 | MS.gene76834:intron | 25.0% |
| !! | AGAAATTGATTTAGTTGCAT+TGG | + | chr1.1:76740845-76740864 | MS.gene76834:CDS | 25.0% |
| !! | ATTTACCAGAAATGGTTTTT+GGG | + | chr1.1:76740174-76740193 | MS.gene76834:CDS | 25.0% |
| !! | CTTTGACTTAGTAGATAAAA+AGG | - | chr1.1:76742097-76742116 | None:intergenic | 25.0% |
| !! | CTTTTTATCTACTAAGTCAA+AGG | + | chr1.1:76742095-76742114 | MS.gene76834:intron | 25.0% |
| !! | GCTTGCTAAATAATCATTTA+AGG | - | chr1.1:76740917-76740936 | None:intergenic | 25.0% |
| !! | TTACTTCGCTAAAAAGTTTT+CGG | - | chr1.1:76742027-76742046 | None:intergenic | 25.0% |
| !! | TTGTACTATGCTGTTATTTA+TGG | + | chr1.1:76740746-76740765 | MS.gene76834:intron | 25.0% |
| !!! | TAGGAATTGTTTTGAAAATC+TGG | + | chr1.1:76741909-76741928 | MS.gene76834:intron | 25.0% |
| AAAAATGCAAGTTTAGGCAA+AGG | - | chr1.1:76741585-76741604 | None:intergenic | 30.0% | |
| AAAAGTGGTAAATACTGATC+TGG | + | chr1.1:76741293-76741312 | MS.gene76834:intron | 30.0% | |
| AAAATGCAAGTTTAGGCAAA+GGG | - | chr1.1:76741584-76741603 | None:intergenic | 30.0% | |
| AATGAATTCTCATCATGAAC+AGG | + | chr1.1:76741218-76741237 | MS.gene76834:intron | 30.0% | |
| AATGTCAAACGTCTTTCTTA+TGG | + | chr1.1:76742648-76742667 | MS.gene76834:intron | 30.0% | |
| ACATTAATATCCAAGTCTGT+CGG | - | chr1.1:76741532-76741551 | None:intergenic | 30.0% | |
| AGCAGATAGTTGATTATGAA+AGG | + | chr1.1:76742064-76742083 | MS.gene76834:intron | 30.0% | |
| AGTAATCAATCACTATGCTA+AGG | - | chr1.1:76741954-76741973 | None:intergenic | 30.0% | |
| ATCTAATATCACTTCCTCAA+AGG | - | chr1.1:76740553-76740572 | None:intergenic | 30.0% | |
| GAATACATCTATTCTGATTC+TGG | - | chr1.1:76741120-76741139 | None:intergenic | 30.0% | |
| GCAATAATTTAGAGATCTCA+AGG | - | chr1.1:76742430-76742449 | None:intergenic | 30.0% | |
| TCTAATATCACTTCCTCAAA+GGG | - | chr1.1:76740552-76740571 | None:intergenic | 30.0% | |
| TGGAATTGATTACTCTTGAA+CGG | - | chr1.1:76740019-76740038 | None:intergenic | 30.0% | |
| TTGAGAACAAGTCTTTGATT+AGG | + | chr1.1:76742239-76742258 | MS.gene76834:intron | 30.0% | |
| ! | AAAGCATTTGATGCTTTATG+TGG | + | chr1.1:76740248-76740267 | MS.gene76834:CDS | 30.0% |
| ! | ACCTCATCATAGAAAAGTAT+AGG | - | chr1.1:76740882-76740901 | None:intergenic | 30.0% |
| ! | AGTTTTTATGATGGTTATGC+AGG | + | chr1.1:76740126-76740145 | MS.gene76834:intron | 30.0% |
| ! | ATACTTTTCTATGATGAGGT+AGG | + | chr1.1:76740882-76740901 | MS.gene76834:intron | 30.0% |
| ! | CATTTACCAGAAATGGTTTT+TGG | + | chr1.1:76740173-76740192 | MS.gene76834:CDS | 30.0% |
| ! | TTGAATAGTTGGTATAGAGA+AGG | + | chr1.1:76741973-76741992 | MS.gene76834:intron | 30.0% |
| ! | TTTACCAGAAATGGTTTTTG+GGG | + | chr1.1:76740175-76740194 | MS.gene76834:CDS | 30.0% |
| ! | TTTGAGTTAACAGATTGCAA+AGG | - | chr1.1:76742462-76742481 | None:intergenic | 30.0% |
| !!! | TGTTTTGAAAATCTGGCTTT+TGG | + | chr1.1:76741916-76741935 | MS.gene76834:intron | 30.0% |
| AAAGTTACATCATCAGCACT+TGG | - | chr1.1:76741372-76741391 | None:intergenic | 35.0% | |
| AAATGCAAGTTTAGGCAAAG+GGG | - | chr1.1:76741583-76741602 | None:intergenic | 35.0% | |
| ACAACTATAACGAACTGATG+GGG | - | chr1.1:76741003-76741022 | None:intergenic | 35.0% | |
| AGAATCTACATTTCAAGCTC+TGG | + | chr1.1:76741737-76741756 | MS.gene76834:CDS | 35.0% | |
| AGCACATATTTCATGAACAC+GGG | - | chr1.1:76740975-76740994 | None:intergenic | 35.0% | |
| ATAACATAAGGCTAACAGCA+AGG | - | chr1.1:76740507-76740526 | None:intergenic | 35.0% | |
| ATACACTCATACTCGTTTCA+AGG | + | chr1.1:76742392-76742411 | MS.gene76834:intron | 35.0% | |
| ATCTGATGATTGATGCAGAA+CGG | + | chr1.1:76742680-76742699 | MS.gene76834:intron | 35.0% | |
| ATCTGCTTAGATCATTCTCA+TGG | - | chr1.1:76742051-76742070 | None:intergenic | 35.0% | |
| CACAACTATAACGAACTGAT+GGG | - | chr1.1:76741004-76741023 | None:intergenic | 35.0% | |
| CACTGACAGAAAAATAAGTG+GGG | + | chr1.1:76742130-76742149 | MS.gene76834:intron | 35.0% | |
| CATTTGATGCTTTATGTGGT+TGG | + | chr1.1:76740252-76740271 | MS.gene76834:CDS | 35.0% | |
| CGTATGCATTGTATATTTGC+TGG | + | chr1.1:76741675-76741694 | MS.gene76834:CDS | 35.0% | |
| CTAATACAGCTTAGAGTTGA+CGG | + | chr1.1:76741627-76741646 | MS.gene76834:intron | 35.0% | |
| GACATCTCATTTACCAGAAA+TGG | + | chr1.1:76740166-76740185 | MS.gene76834:CDS | 35.0% | |
| GAGCACATATTTCATGAACA+CGG | - | chr1.1:76740976-76740995 | None:intergenic | 35.0% | |
| GCATGGTCAACTAGTAAAAA+TGG | - | chr1.1:76741029-76741048 | None:intergenic | 35.0% | |
| GTCACTTCTTACTGTAAAAG+TGG | + | chr1.1:76741278-76741297 | MS.gene76834:CDS | 35.0% | |
| GTTTCACACTTTCACTAGTA+AGG | - | chr1.1:76741056-76741075 | None:intergenic | 35.0% | |
| GTTTCTTCTCTTGCAATTCT+GGG | + | chr1.1:76741424-76741443 | MS.gene76834:CDS | 35.0% | |
| TATACGCTGCAGAATCAAAA+GGG | - | chr1.1:76742709-76742728 | None:intergenic | 35.0% | |
| TATTCGTGTTTACTTAGCTG+AGG | + | chr1.1:76741135-76741154 | MS.gene76834:intron | 35.0% | |
| TCTGCTTAGATCATTCTCAT+GGG | - | chr1.1:76742050-76742069 | None:intergenic | 35.0% | |
| TGTAAAGGGAGAAAGAAAGT+GGG | + | chr1.1:76741844-76741863 | MS.gene76834:intron | 35.0% | |
| TTATACGCTGCAGAATCAAA+AGG | - | chr1.1:76742710-76742729 | None:intergenic | 35.0% | |
| TTCACTAGTAAGGATTTGCA+TGG | - | chr1.1:76741046-76741065 | None:intergenic | 35.0% | |
| TTTATGATGGTTATGCAGGT+GGG | + | chr1.1:76740130-76740149 | MS.gene76834:intron | 35.0% | |
| ! | ACAAAGATTTCTGAGGAAAC+CGG | + | chr1.1:76740795-76740814 | MS.gene76834:CDS | 35.0% |
| ! | ACATTTACAACGCCTTATTG+TGG | + | chr1.1:76740582-76740601 | MS.gene76834:CDS | 35.0% |
| ! | ATAGAAAAGTATAGGCTCCT+TGG | - | chr1.1:76740874-76740893 | None:intergenic | 35.0% |
| ! | GCACTGACAGAAAAATAAGT+GGG | + | chr1.1:76742129-76742148 | MS.gene76834:intron | 35.0% |
| ! | GCCTATACTTTTCTATGATG+AGG | + | chr1.1:76740878-76740897 | MS.gene76834:CDS | 35.0% |
| ! | TGCACTGACAGAAAAATAAG+TGG | + | chr1.1:76742128-76742147 | MS.gene76834:intron | 35.0% |
| ! | TTTTATGATGGTTATGCAGG+TGG | + | chr1.1:76740129-76740148 | MS.gene76834:intron | 35.0% |
| ! | TTTTCCCCAAAAACCATTTC+TGG | - | chr1.1:76740182-76740201 | None:intergenic | 35.0% |
| !! | ATTTCAATGGGTTGAGATCA+TGG | - | chr1.1:76742362-76742381 | None:intergenic | 35.0% |
| !! | CTGTTAGCCTTATGTTATCT+TGG | + | chr1.1:76740509-76740528 | MS.gene76834:intron | 35.0% |
| !! | GTAAGAGGTTTTGTAGTAAG+CGG | + | chr1.1:76740690-76740709 | MS.gene76834:intron | 35.0% |
| !! | GTGCTGATGATGTAACTTTT+TGG | + | chr1.1:76741373-76741392 | MS.gene76834:intron | 35.0% |
| AAGAGAAGAAACCAAGAGCT+TGG | - | chr1.1:76741416-76741435 | None:intergenic | 40.0% | |
| ACTTTGTACTGCTTTAGCAG+AGG | + | chr1.1:76742598-76742617 | MS.gene76834:intron | 40.0% | |
| AGATGAATGTGTGCGATGTT+TGG | - | chr1.1:76740039-76740058 | None:intergenic | 40.0% | |
| AGTGTTATGTTCAAGCCTCA+TGG | + | chr1.1:76742482-76742501 | MS.gene76834:intron | 40.0% | |
| CAACTATTGGGACGTGTAAA+GGG | + | chr1.1:76741830-76741849 | MS.gene76834:intron | 40.0% | |
| CACAAATCCTGTTGTACTTC+GGG | + | chr1.1:76741701-76741720 | MS.gene76834:CDS | 40.0% | |
| GAATGGGACAAAGATTTCTG+AGG | + | chr1.1:76740788-76740807 | MS.gene76834:intron | 40.0% | |
| GAATTCTCATCATGAACAGG+TGG | + | chr1.1:76741221-76741240 | MS.gene76834:intron | 40.0% | |
| GCACAAATCCTGTTGTACTT+CGG | + | chr1.1:76741700-76741719 | MS.gene76834:CDS | 40.0% | |
| GCACAACTATAACGAACTGA+TGG | - | chr1.1:76741005-76741024 | None:intergenic | 40.0% | |
| GGTTTCTTCTCTTGCAATTC+TGG | + | chr1.1:76741423-76741442 | MS.gene76834:CDS | 40.0% | |
| GTGTAAAGGGAGAAAGAAAG+TGG | + | chr1.1:76741843-76741862 | MS.gene76834:intron | 40.0% | |
| GTTCTGCATCAATCATCAGA+TGG | - | chr1.1:76742681-76742700 | None:intergenic | 40.0% | |
| TCAACTATTGGGACGTGTAA+AGG | + | chr1.1:76741829-76741848 | MS.gene76834:intron | 40.0% | |
| TGATTACTCTTGAACGGTTG+AGG | - | chr1.1:76740013-76740032 | None:intergenic | 40.0% | |
| TTAAGTGAAGCTACGCAATG+TGG | + | chr1.1:76741499-76741518 | MS.gene76834:intron | 40.0% | |
| TTGAGTAGTACGCTTGACAA+CGG | - | chr1.1:76742762-76742781 | None:intergenic | 40.0% | |
| ! | TTTAGTTGCATTGGCATCCA+AGG | + | chr1.1:76740854-76740873 | MS.gene76834:CDS | 40.0% |
| AAAAACAGCCCTGACACAAG+GGG | - | chr1.1:76740939-76740958 | None:intergenic | 45.0% | |
| AACCACCTGTAGTTTCCATG+AGG | - | chr1.1:76742500-76742519 | None:intergenic | 45.0% | |
| AACGGTTGAGGAGTTGAGAA+TGG | - | chr1.1:76740001-76740020 | None:intergenic | 45.0% | |
| ACAAAAACAGCCCTGACACA+AGG | - | chr1.1:76740941-76740960 | None:intergenic | 45.0% | |
| AGCGTAAAGCACGGTAGAAA+AGG | - | chr1.1:76741875-76741894 | None:intergenic | 45.0% | |
| AGGAAACCGGAAATCTCCAT+TGG | + | chr1.1:76740808-76740827 | MS.gene76834:CDS | 45.0% | |
| ATAGCACCGCTTCCACAATA+AGG | - | chr1.1:76740597-76740616 | None:intergenic | 45.0% | |
| CAAAAACAGCCCTGACACAA+GGG | - | chr1.1:76740940-76740959 | None:intergenic | 45.0% | |
| CGGCGAAATGGAAGTTTAGA+AGG | + | chr1.1:76740312-76740331 | MS.gene76834:CDS | 45.0% | |
| GAGGATGAACTCGCTGATAA+TGG | + | chr1.1:76741252-76741271 | MS.gene76834:CDS | 45.0% | |
| GGAAACCGGAAATCTCCATT+GGG | + | chr1.1:76740809-76740828 | MS.gene76834:CDS | 45.0% | |
| GTCTTCCCAATGGAGATTTC+CGG | - | chr1.1:76740817-76740836 | None:intergenic | 45.0% | |
| TCAAGCCTCATGGAAACTAC+AGG | + | chr1.1:76742492-76742511 | MS.gene76834:intron | 45.0% | |
| TGAGTAGTACGCTTGACAAC+GGG | - | chr1.1:76742761-76742780 | None:intergenic | 45.0% | |
| ! | ACAACGCCTTATTGTGGAAG+CGG | + | chr1.1:76740588-76740607 | MS.gene76834:CDS | 45.0% |
| ! | ACGCTGAGCTAGTCTATCAT+AGG | + | chr1.1:76741890-76741909 | MS.gene76834:intron | 45.0% |
| ! | TACATTTCAAGCTCTGGCTG+CGG | + | chr1.1:76741743-76741762 | MS.gene76834:CDS | 45.0% |
| !! | TGAACAGGTGGTGCTATATG+AGG | + | chr1.1:76741233-76741252 | MS.gene76834:intron | 45.0% |
| AATGTGCAGCAAGCCCTTTG+AGG | + | chr1.1:76740536-76740555 | MS.gene76834:intron | 50.0% | |
| ACCTGTTGAAGTTCCTGCTG+CGG | + | chr1.1:76740292-76740311 | MS.gene76834:CDS | 50.0% | |
| ACGCTGCAGAATCAAAAGGG+TGG | - | chr1.1:76742706-76742725 | None:intergenic | 50.0% | |
| AGAGAGTCATGCCAAGCTCT+TGG | + | chr1.1:76741402-76741421 | MS.gene76834:intron | 50.0% | |
| AGCCTCATGGAAACTACAGG+TGG | + | chr1.1:76742495-76742514 | MS.gene76834:intron | 50.0% | |
| CAACTCTCCCGAAGTACAAC+AGG | - | chr1.1:76741711-76741730 | None:intergenic | 50.0% | |
| CTTCCTTGCAGTCTTCCCAA+TGG | - | chr1.1:76740827-76740846 | None:intergenic | 50.0% | |
| GAGTAGTACGCTTGACAACG+GGG | - | chr1.1:76742760-76742779 | None:intergenic | 50.0% | |
| TCTCCATTGGGAAGACTGCA+AGG | + | chr1.1:76740821-76740840 | MS.gene76834:CDS | 50.0% | |
| TGGATTGCTTCCGACAGACT+TGG | + | chr1.1:76741519-76741538 | MS.gene76834:intron | 50.0% | |
| TTAGCAAGCCCCTTGTGTCA+GGG | + | chr1.1:76740928-76740947 | MS.gene76834:intron | 50.0% | |
| TTGTACTTCGGGAGAGTTGC+TGG | + | chr1.1:76741712-76741731 | MS.gene76834:CDS | 50.0% | |
| TTTAGCAAGCCCCTTGTGTC+AGG | + | chr1.1:76740927-76740946 | MS.gene76834:intron | 50.0% | |
| ! | AGCTTCTGGCTGATGATGCT+TGG | - | chr1.1:76742737-76742756 | None:intergenic | 50.0% |
| ! | GACTAGCTCAGCGTAAAGCA+CGG | - | chr1.1:76741884-76741903 | None:intergenic | 50.0% |
| ! | TAGGCAAAGGGGTGTAAAGC+AGG | - | chr1.1:76741572-76741591 | None:intergenic | 50.0% |
| AACTTCCATTTCGCCGCAGC+AGG | - | chr1.1:76740308-76740327 | None:intergenic | 55.0% | |
| AAGTTCCTGCTGCGGCGAAA+TGG | + | chr1.1:76740300-76740319 | MS.gene76834:CDS | 55.0% | |
| CATGGATGCGAATGCCTCTC+CGG | - | chr1.1:76739951-76739970 | None:intergenic | 55.0% | |
| GAGAACGACTTGAAAGCCGC+CGG | + | chr1.1:76739901-76739920 | MS.gene76834:CDS | 55.0% | |
| GAGACTCGATCAACCAGCCA+TGG | - | chr1.1:76739969-76739988 | None:intergenic | 55.0% | |
| GCAGCAGGAACTTCAACAGG+TGG | - | chr1.1:76740293-76740312 | None:intergenic | 55.0% | |
| AAGTCTTCGACGACGGTGGC+CGG | + | chr1.1:76739929-76739948 | MS.gene76834:CDS | 60.0% | |
| GCCGCAGCAGGAACTTCAAC+AGG | - | chr1.1:76740296-76740315 | None:intergenic | 60.0% | |
| GCTGAAGTCTTCGACGACGG+TGG | + | chr1.1:76739925-76739944 | MS.gene76834:CDS | 60.0% | |
| GCTTGACAACGGGGAGCTTC+TGG | - | chr1.1:76742751-76742770 | None:intergenic | 60.0% | |
| GTCGTCGAAGACTTCAGCGC+CGG | - | chr1.1:76739923-76739942 | None:intergenic | 60.0% | |
| ! | GAGGCATTCGCATCCATGGC+TGG | + | chr1.1:76739953-76739972 | MS.gene76834:CDS | 60.0% |
| ! | GGCGCTGAAGTCTTCGACGA+CGG | + | chr1.1:76739922-76739941 | MS.gene76834:CDS | 60.0% |
| !! | CGGAGAGGCATTCGCATCCA+TGG | + | chr1.1:76739949-76739968 | MS.gene76834:CDS | 60.0% |
| ! | GTCGAAGACTTCAGCGCCGG+CGG | - | chr1.1:76739920-76739939 | None:intergenic | 65.0% |
| TTCGACGACGGTGGCCGGAG+AGG | + | chr1.1:76739934-76739953 | MS.gene76834:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 76739883 | 76742802 | 76739883 | ID=MS.gene76834 |
| chr1.1 | mRNA | 76739883 | 76742802 | 76739883 | ID=MS.gene76834.t1;Parent=MS.gene76834 |
| chr1.1 | exon | 76739883 | 76740025 | 76739883 | ID=MS.gene76834.t1.exon1;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76739883 | 76740025 | 76739883 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76740148 | 76740333 | 76740148 | ID=MS.gene76834.t1.exon2;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76740148 | 76740333 | 76740148 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76740545 | 76740635 | 76740545 | ID=MS.gene76834.t1.exon3;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76740545 | 76740635 | 76740545 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76740789 | 76740899 | 76740789 | ID=MS.gene76834.t1.exon4;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76740789 | 76740899 | 76740789 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76741240 | 76741299 | 76741240 | ID=MS.gene76834.t1.exon5;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76741240 | 76741299 | 76741240 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76741404 | 76741445 | 76741404 | ID=MS.gene76834.t1.exon6;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76741404 | 76741445 | 76741404 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76741636 | 76741764 | 76741636 | ID=MS.gene76834.t1.exon7;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76741636 | 76741764 | 76741636 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| chr1.1 | exon | 76742698 | 76742802 | 76742698 | ID=MS.gene76834.t1.exon8;Parent=MS.gene76834.t1 |
| chr1.1 | CDS | 76742698 | 76742802 | 76742698 | ID=cds.MS.gene76834.t1;Parent=MS.gene76834.t1 |
| Gene Sequence |
| Protein sequence |
