Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80704.t1 | XP_003613218.1 | 96.3 | 615 | 7 | 1 | 1 | 599 | 1 | 615 | 0.00E+00 | 1170.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80704.t1 | P42347 | 87.9 | 621 | 53 | 2 | 1 | 599 | 1 | 621 | 0.0e+00 | 1078.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80704.t1 | Q8GUA6 | 96.3 | 615 | 7 | 1 | 1 | 599 | 1 | 615 | 0.0e+00 | 1170.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene80704 | 0.820804 | 5.65E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene80704 | 0.828866 | 7.08E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene80704 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene80704 | 0.803246 | 3.82E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene80704 | 0.815468 | 9.11E-52 | -1.69E-46 |
| MS.gene050348 | MS.gene80704 | 0.811064 | 8.44E-51 | -1.69E-46 |
| MS.gene050559 | MS.gene80704 | 0.825095 | 5.65E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene80704 | 0.82615 | 3.18E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene80704 | 0.823898 | 1.08E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene80704 | 0.801809 | 7.56E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene80704 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene80704 | 0.850396 | 1.74E-60 | -1.69E-46 |
| MS.gene051279 | MS.gene80704 | 0.849962 | 2.31E-60 | -1.69E-46 |
| MS.gene051543 | MS.gene80704 | 0.809841 | 1.55E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene80704 | 0.827027 | 1.96E-54 | -1.69E-46 |
| MS.gene051800 | MS.gene80704 | 0.850946 | 1.22E-60 | -1.69E-46 |
| MS.gene052036 | MS.gene80704 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene80704 | 0.830868 | 2.30E-55 | -1.69E-46 |
| MS.gene052239 | MS.gene80704 | -0.844613 | 6.78E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene80704 | 0.807986 | 3.87E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene80704 | 0.830437 | 2.94E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene80704 | 0.805679 | 1.19E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene80704 | 0.81208 | 5.07E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene80704 | 0.818411 | 1.99E-52 | -1.69E-46 |
| MS.gene052776 | MS.gene80704 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene80704 | 0.825044 | 5.81E-54 | -1.69E-46 |
| MS.gene053166 | MS.gene80704 | 0.807319 | 5.36E-50 | -1.69E-46 |
| MS.gene053621 | MS.gene80704 | 0.820875 | 5.44E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene80704 | 0.817254 | 3.63E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene80704 | 0.826278 | 2.96E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene80704 | 0.830625 | 2.64E-55 | -1.69E-46 |
| MS.gene055228 | MS.gene80704 | 0.818323 | 2.08E-52 | -1.69E-46 |
| MS.gene055464 | MS.gene80704 | 0.804126 | 2.51E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene80704 | 0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene80704 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene80704 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene80704 | 0.807518 | 4.86E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene80704 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene80704 | 0.808332 | 3.26E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene80704 | 0.863599 | 2.22E-64 | -1.69E-46 |
| MS.gene056622 | MS.gene80704 | 0.83368 | 4.64E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene80704 | 0.846789 | 1.74E-59 | -1.69E-46 |
| MS.gene056973 | MS.gene80704 | 0.842865 | 1.99E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene80704 | 0.814597 | 1.42E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene80704 | 0.800805 | 1.21E-48 | -1.69E-46 |
| MS.gene057869 | MS.gene80704 | 0.865451 | 5.85E-65 | -1.69E-46 |
| MS.gene058010 | MS.gene80704 | 0.887197 | 1.76E-72 | -1.69E-46 |
| MS.gene058289 | MS.gene80704 | 0.804675 | 1.93E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene80704 | 0.817064 | 4.00E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene80704 | 0.808339 | 3.25E-50 | -1.69E-46 |
| MS.gene058919 | MS.gene80704 | 0.819605 | 1.06E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene80704 | 0.839884 | 1.21E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene80704 | 0.829468 | 5.06E-55 | -1.69E-46 |
| MS.gene060011 | MS.gene80704 | 0.824161 | 9.38E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene80704 | 0.810881 | 9.24E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene80704 | 0.806305 | 8.77E-50 | -1.69E-46 |
| MS.gene060312 | MS.gene80704 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene060353 | MS.gene80704 | 0.807401 | 5.15E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene80704 | 0.849927 | 2.36E-60 | -1.69E-46 |
| MS.gene060933 | MS.gene80704 | 0.830234 | 3.29E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene80704 | 0.804788 | 1.83E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene80704 | 0.801843 | 7.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80704.t1 | MTR_5g034120 | 96.110 | 617 | 8 | 1 | 1 | 601 | 1 | 617 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80704.t1 | AT1G60490 | 77.885 | 624 | 114 | 4 | 1 | 601 | 1 | 623 | 0.0 | 980 |
| MS.gene80704.t1 | AT1G49340 | 23.889 | 360 | 222 | 13 | 274 | 600 | 1491 | 1831 | 6.96e-12 | 69.3 |
| MS.gene80704.t1 | AT1G49340 | 23.889 | 360 | 222 | 13 | 274 | 600 | 1491 | 1831 | 6.96e-12 | 69.3 |
| MS.gene80704.t1 | AT1G49340 | 23.889 | 360 | 222 | 13 | 274 | 600 | 1484 | 1824 | 7.14e-12 | 69.3 |
| MS.gene80704.t1 | AT1G49340 | 23.889 | 360 | 222 | 13 | 274 | 600 | 1484 | 1824 | 7.14e-12 | 69.3 |
Find 136 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCAAATGGTATCGTTAA+TGG | 0.238019 | 5.4:+24106506 | MS.gene80704:CDS |
| AAGCTTAGACAGCTACTTTC+TGG | 0.244205 | 5.4:+24105915 | MS.gene80704:CDS |
| GCCAGTCCACTCGTTGAATT+TGG | 0.248295 | 5.4:-24101765 | None:intergenic |
| AAGGAAATAGACCTGAATTA+AGG | 0.256047 | 5.4:-24099533 | None:intergenic |
| CACATTGATGGCGCGCCGTT+TGG | 0.265882 | 5.4:+24099938 | MS.gene80704:CDS |
| TTTCCCAATTCCCTTAATTC+AGG | 0.290246 | 5.4:+24099522 | MS.gene80704:CDS |
| TTACTGCACATATGAAATTC+TGG | 0.297436 | 5.4:+24105284 | MS.gene80704:CDS |
| TAGACCTGAATTAAGGGAAT+TGG | 0.308027 | 5.4:-24099526 | None:intergenic |
| ATGACCCTACATATGCAAAA+AGG | 0.322562 | 5.4:+24105259 | MS.gene80704:CDS |
| TGCACATTATTAACCTTTCC+AGG | 0.328164 | 5.4:-24101577 | None:intergenic |
| TCACGTTAACAGCTAAATAT+CGG | 0.339699 | 5.4:+24101151 | MS.gene80704:CDS |
| CCATTTGCTGTTTAAAAGTA+AGG | 0.347487 | 5.4:-24106231 | None:intergenic |
| AATTTCTTCGTTGTGTTGAA+TGG | 0.348338 | 5.4:+24103752 | MS.gene80704:CDS |
| TTACTTGCTCCAATTGGTTC+AGG | 0.349986 | 5.4:+24105032 | MS.gene80704:CDS |
| AGCATTAAGCAATATTGAAT+TGG | 0.350124 | 5.4:+24105200 | MS.gene80704:intron |
| GACCAATACCTCATCAAAAT+AGG | 0.353005 | 5.4:-24105955 | None:intergenic |
| CCATACAAGGTTCTAGCAAC+TGG | 0.356646 | 5.4:+24106570 | MS.gene80704:CDS |
| CCAATGATATTGTTATTGTC+TGG | 0.358804 | 5.4:+24102809 | MS.gene80704:CDS |
| ATTTAAACGGTGGCAGAGTT+TGG | 0.367837 | 5.4:+24105806 | MS.gene80704:CDS |
| GGAAGCAAAAGCTTAGGCTT+TGG | 0.380644 | 5.4:+24101515 | MS.gene80704:CDS |
| TCGCCTCACATTCAAAACTA+TGG | 0.381640 | 5.4:+24101792 | MS.gene80704:CDS |
| TCTCATGGTGAAGGATTGAT+TGG | 0.388746 | 5.4:+24101445 | MS.gene80704:CDS |
| GAAGCAAAAGCTTAGGCTTT+GGG | 0.388788 | 5.4:+24101516 | MS.gene80704:CDS |
| TTAGGTCCCTAGGCATGAAC+GGG | 0.395425 | 5.4:+24101696 | MS.gene80704:intron |
| TCCAATTGGTTCAGGCTCTT+CGG | 0.397784 | 5.4:+24105040 | MS.gene80704:CDS |
| ATCCCAGTGATGAGCACATC+TGG | 0.403063 | 5.4:-24106160 | None:intergenic |
| TACTTTCTCTCATTTGAGCT+TGG | 0.405483 | 5.4:-24102925 | None:intergenic |
| CCCTACCTGTGCTAATGAAC+GGG | 0.416972 | 5.4:-24106625 | None:intergenic |
| AGGAAATAGACCTGAATTAA+GGG | 0.417957 | 5.4:-24099532 | None:intergenic |
| TTCTTTGATGTCTGAGAAGA+GGG | 0.418191 | 5.4:+24103720 | MS.gene80704:CDS |
| AGACCTGAATTAAGGGAATT+GGG | 0.427233 | 5.4:-24099525 | None:intergenic |
| TTCCGCATCGAACGCCTTGA+AGG | 0.429980 | 5.4:+24099489 | MS.gene80704:CDS |
| CCAGTTGCTAGAACCTTGTA+TGG | 0.430909 | 5.4:-24106570 | None:intergenic |
| ACACCAGATGTGCTCATCAC+TGG | 0.432555 | 5.4:+24106157 | MS.gene80704:CDS |
| GAAACAAGCACTAGAATTGA+TGG | 0.437691 | 5.4:+24104293 | MS.gene80704:CDS |
| GAAAGGGTAAATTGCCTTCA+AGG | 0.440046 | 5.4:-24099503 | None:intergenic |
| ATATCATTGGTCGAAGCTAT+AGG | 0.441914 | 5.4:-24102796 | None:intergenic |
| AATTGGCAAGCTTTCTTCGC+TGG | 0.446366 | 5.4:+24105217 | MS.gene80704:CDS |
| GAGTGTGCGTTGCACATTGA+TGG | 0.450351 | 5.4:+24099926 | MS.gene80704:CDS |
| TCAATGTTACTTGCTCCAAT+TGG | 0.451060 | 5.4:+24105026 | MS.gene80704:CDS |
| CCACGGGACCCTCGTATTGT+TGG | 0.464547 | 5.4:+24101118 | MS.gene80704:CDS |
| CTTGTTGTAGAAAATGATGA+TGG | 0.464644 | 5.4:+24099884 | MS.gene80704:intron |
| CCAGACAATAACAATATCAT+TGG | 0.466559 | 5.4:-24102809 | None:intergenic |
| ACCGAAGAGCCTGAACCAAT+TGG | 0.466842 | 5.4:-24105041 | None:intergenic |
| CAATGATATTGTTATTGTCT+GGG | 0.467655 | 5.4:+24102810 | MS.gene80704:CDS |
| CCCTAACAATTTGACATGAC+TGG | 0.469338 | 5.4:+24099417 | None:intergenic |
| GGACTTTGAGTGGAGATGAT+AGG | 0.478943 | 5.4:+24103674 | MS.gene80704:CDS |
| CTGGTGAAGGTTGGAGTCCA+CGG | 0.480995 | 5.4:+24101101 | MS.gene80704:intron |
| TGGGATCTTTCTCATGGTGA+AGG | 0.482025 | 5.4:+24101436 | MS.gene80704:CDS |
| TCTCCACTCAAAGTCCTTGT+TGG | 0.482283 | 5.4:-24103667 | None:intergenic |
| GCCAAATTCAACGAGTGGAC+TGG | 0.484095 | 5.4:+24101764 | MS.gene80704:CDS |
| CACGTTAACAGCTAAATATC+GGG | 0.491737 | 5.4:+24101152 | MS.gene80704:CDS |
| CAGGTTTGGGATCTTTCTCA+TGG | 0.498015 | 5.4:+24101430 | MS.gene80704:intron |
| CACCAGATGTGCTCATCACT+GGG | 0.498800 | 5.4:+24106158 | MS.gene80704:CDS |
| GACACCACGGGTTAAACTCC+TGG | 0.502225 | 5.4:-24102884 | None:intergenic |
| TGTGTCCTCATTAGGTCCCT+AGG | 0.503314 | 5.4:+24101686 | MS.gene80704:intron |
| ACCTTTCCAGGTGTAGAAGT+AGG | 0.504443 | 5.4:-24101565 | None:intergenic |
| TTTAACTGTTTATGCTCAGA+GGG | 0.508499 | 5.4:-24102856 | None:intergenic |
| CCTTTCCAGGTGTAGAAGTA+GGG | 0.509565 | 5.4:-24101564 | None:intergenic |
| ATACTTCAATATTCTCTGAA+TGG | 0.509593 | 5.4:-24103641 | None:intergenic |
| AAGATGATAAAACCTTGTTC+TGG | 0.511758 | 5.4:-24099969 | None:intergenic |
| TCCATCCCGTTCATTAGCAC+AGG | 0.513341 | 5.4:+24106620 | MS.gene80704:CDS |
| ATAAACAGTTAAAGCTGGCC+AGG | 0.513701 | 5.4:+24102866 | MS.gene80704:CDS |
| CGTTCGATGCGGAAAGTGAC+GGG | 0.517013 | 5.4:-24099480 | None:intergenic |
| AAGCTTTCTTCGCTGGTATG+TGG | 0.517061 | 5.4:+24105224 | MS.gene80704:CDS |
| GGTGCAAACGGAGAGGAAGA+TGG | 0.517256 | 5.4:+24105783 | MS.gene80704:CDS |
| CTAGCAACTGGGCAAGATGA+AGG | 0.518120 | 5.4:+24106582 | MS.gene80704:CDS |
| CAAAACTATGGAGAAAATCA+AGG | 0.518753 | 5.4:+24101804 | MS.gene80704:CDS |
| TGGTGAAGGTTGGAGTCCAC+GGG | 0.519827 | 5.4:+24101102 | MS.gene80704:intron |
| CCACTCAAAGTCCTTGTTGG+TGG | 0.523782 | 5.4:-24103664 | None:intergenic |
| CAAAAGCTTAGGCTTTGGGC+AGG | 0.524104 | 5.4:+24101520 | MS.gene80704:CDS |
| TTAAATATTGATGACTCTGA+GGG | 0.524865 | 5.4:-24106187 | None:intergenic |
| CAGATGGGAGCTGGTGCAAA+CGG | 0.525919 | 5.4:+24105771 | MS.gene80704:intron |
| TGTTGAATGGAGTGATGTAC+AGG | 0.532745 | 5.4:+24103765 | MS.gene80704:CDS |
| CCCTACTTCTACACCTGGAA+AGG | 0.534797 | 5.4:+24101564 | MS.gene80704:CDS |
| TTTCTTTGATGTCTGAGAAG+AGG | 0.535885 | 5.4:+24103719 | MS.gene80704:CDS |
| ATGATAAAACCTTGTTCTGG+TGG | 0.536198 | 5.4:-24099966 | None:intergenic |
| GATTGACGTTTGTGATGCAC+TGG | 0.539342 | 5.4:+24104329 | MS.gene80704:CDS |
| CCAAAATCTCAGATGGGAGC+TGG | 0.541918 | 5.4:+24105762 | MS.gene80704:intron |
| CACTAGAATTGATGGGCAAG+TGG | 0.544415 | 5.4:+24104301 | MS.gene80704:CDS |
| GTTCAATCACTAGAGATGTC+AGG | 0.551302 | 5.4:+24105859 | MS.gene80704:CDS |
| ATTAGGTCCCTAGGCATGAA+CGG | 0.552317 | 5.4:+24101695 | MS.gene80704:intron |
| TCTGCATTTAACTCCATACA+AGG | 0.553089 | 5.4:+24106557 | MS.gene80704:CDS |
| GGTGTCAGAGGTGATCGTAT+TGG | 0.554165 | 5.4:-24106139 | None:intergenic |
| GTTCTGGTGGGAAGTCCAAA+CGG | 0.556275 | 5.4:-24099953 | None:intergenic |
| GCGTTCGATGCGGAAAGTGA+CGG | 0.556749 | 5.4:-24099481 | None:intergenic |
| CATGGTGAAGGATTGATTGG+AGG | 0.557450 | 5.4:+24101448 | MS.gene80704:CDS |
| TGAATTAAGGGAATTGGGAA+AGG | 0.557858 | 5.4:-24099520 | None:intergenic |
| TTTAAATATTGATGACTCTG+AGG | 0.558343 | 5.4:-24106188 | None:intergenic |
| GAGAGGAAGATGGATTTAAA+CGG | 0.558804 | 5.4:+24105793 | MS.gene80704:CDS |
| AGACTGGGAAGCAAAAGCTT+AGG | 0.563123 | 5.4:+24101509 | MS.gene80704:CDS |
| ACCCTACCTGTGCTAATGAA+CGG | 0.563767 | 5.4:-24106626 | None:intergenic |
| TGAGCATAAACAGTTAAAGC+TGG | 0.564717 | 5.4:+24102861 | MS.gene80704:CDS |
| CCCGTTCATTAGCACAGGTA+GGG | 0.571642 | 5.4:+24106625 | MS.gene80704:CDS |
| TCTGGAGGAGTATATGATGA+AGG | 0.572902 | 5.4:+24105302 | MS.gene80704:CDS |
| TGGGCAAGATGAAGGCATGT+TGG | 0.574569 | 5.4:+24106590 | MS.gene80704:CDS |
| GAATTAAGGGAATTGGGAAA+GGG | 0.579406 | 5.4:-24099519 | None:intergenic |
| GTTGTTAAAGAGAAGAATTG+TGG | 0.583980 | 5.4:-24101473 | None:intergenic |
| TGCCTTCAAGGCGTTCGATG+CGG | 0.584785 | 5.4:-24099491 | None:intergenic |
| GGTCCCTAGGCATGAACGGG+GGG | 0.585456 | 5.4:+24101699 | MS.gene80704:intron |
| TATTGTCTGGGACCCAGAAG+TGG | 0.588125 | 5.4:+24102822 | MS.gene80704:CDS |
| TCTTCTTCTGTGTATTACCT+CGG | 0.588947 | 5.4:-24105887 | None:intergenic |
| CTTTAACTGTTTATGCTCAG+AGG | 0.591757 | 5.4:-24102857 | None:intergenic |
| TGATAAAACCTTGTTCTGGT+GGG | 0.593117 | 5.4:-24099965 | None:intergenic |
| ATCTCTGTCTATGACACCAC+GGG | 0.595270 | 5.4:-24102896 | None:intergenic |
| TGGAAGTGCTCATTTGTATG+TGG | 0.595283 | 5.4:+24101846 | MS.gene80704:CDS |
| ACTAGAATTGATGGGCAAGT+GGG | 0.598933 | 5.4:+24104302 | MS.gene80704:CDS |
| TTGGACTTCCCACCAGAACA+AGG | 0.599322 | 5.4:+24099957 | MS.gene80704:CDS |
| TTGGTCGAAGCTATAGGAGA+TGG | 0.600468 | 5.4:-24102790 | None:intergenic |
| CCACCAACAAGGACTTTGAG+TGG | 0.604075 | 5.4:+24103664 | MS.gene80704:CDS |
| GAGATGATAGGCAACTCTTG+TGG | 0.604236 | 5.4:+24103686 | MS.gene80704:CDS |
| ACATTCCCTACTTCTACACC+TGG | 0.610568 | 5.4:+24101559 | MS.gene80704:CDS |
| CATACAAGGTTCTAGCAACT+GGG | 0.611041 | 5.4:+24106571 | MS.gene80704:CDS |
| AAACAAGCACTAGAATTGAT+GGG | 0.614052 | 5.4:+24104294 | MS.gene80704:CDS |
| TGGGCAGGAAAAGAAGCAGA+TGG | 0.617410 | 5.4:+24101535 | MS.gene80704:CDS |
| ACCTGTGCTAATGAACGGGA+TGG | 0.618260 | 5.4:-24106621 | None:intergenic |
| TGTTTAAAAGTAAGGCGCAA+AGG | 0.624109 | 5.4:-24106223 | None:intergenic |
| ATTGTCTGGGACCCAGAAGT+GGG | 0.631740 | 5.4:+24102823 | MS.gene80704:CDS |
| TGGAACTGCAGAGTTATATG+TGG | 0.636425 | 5.4:+24099904 | MS.gene80704:CDS |
| AGGTCCCTAGGCATGAACGG+GGG | 0.637589 | 5.4:+24101698 | MS.gene80704:intron |
| GAGCTCATTCCAACAATACG+AGG | 0.645146 | 5.4:-24101127 | None:intergenic |
| GCGAGGCCAAATTCAACGAG+TGG | 0.647883 | 5.4:+24101759 | MS.gene80704:CDS |
| GAACACTCACTGCATAAGCA+CGG | 0.655020 | 5.4:-24104978 | None:intergenic |
| TAGGTCCCTAGGCATGAACG+GGG | 0.661850 | 5.4:+24101697 | MS.gene80704:intron |
| ATGAGCACATCTGGTGTCAG+AGG | 0.665902 | 5.4:-24106151 | None:intergenic |
| CTGCACATATGAAATTCTGG+AGG | 0.666533 | 5.4:+24105287 | MS.gene80704:CDS |
| ACCCCATGCACATACCACGC+TGG | 0.667482 | 5.4:-24105104 | None:intergenic |
| TCCCGTTCATTAGCACAGGT+AGG | 0.673898 | 5.4:+24106624 | MS.gene80704:CDS |
| GGGAGCTGGTGCAAACGGAG+AGG | 0.679178 | 5.4:+24105776 | MS.gene80704:CDS |
| AGGAAGATGGATTTAAACGG+TGG | 0.680685 | 5.4:+24105796 | MS.gene80704:CDS |
| GATCTCTGTCTATGACACCA+CGG | 0.681065 | 5.4:-24102897 | None:intergenic |
| CCAACAATACGAGGGTCCCG+TGG | 0.688862 | 5.4:-24101118 | None:intergenic |
| TATTGAAGTATCCACCAACA+AGG | 0.699350 | 5.4:+24103653 | MS.gene80704:CDS |
| AGAGATGTCAGGAATGTCCG+AGG | 0.705449 | 5.4:+24105870 | MS.gene80704:CDS |
| AGCTCATTCCAACAATACGA+GGG | 0.708520 | 5.4:-24101126 | None:intergenic |
| CTGGCCAGGAGTTTAACCCG+TGG | 0.725449 | 5.4:+24102880 | MS.gene80704:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 24099432 | 24106659 | 24099432 | ID=MS.gene80704 |
| chr5.4 | mRNA | 24099432 | 24106659 | 24099432 | ID=MS.gene80704.t1;Parent=MS.gene80704 |
| chr5.4 | exon | 24099432 | 24099543 | 24099432 | ID=MS.gene80704.t1.exon1;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24099432 | 24099543 | 24099432 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24099894 | 24099978 | 24099894 | ID=MS.gene80704.t1.exon2;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24099894 | 24099978 | 24099894 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24101110 | 24101206 | 24101110 | ID=MS.gene80704.t1.exon3;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24101110 | 24101206 | 24101110 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24101433 | 24101585 | 24101433 | ID=MS.gene80704.t1.exon4;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24101433 | 24101585 | 24101433 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24101700 | 24101909 | 24101700 | ID=MS.gene80704.t1.exon5;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24101700 | 24101909 | 24101700 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24102766 | 24102944 | 24102766 | ID=MS.gene80704.t1.exon6;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24102766 | 24102944 | 24102766 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24103639 | 24103786 | 24103639 | ID=MS.gene80704.t1.exon7;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24103639 | 24103786 | 24103639 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24104288 | 24104383 | 24104288 | ID=MS.gene80704.t1.exon8;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24104288 | 24104383 | 24104288 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24104976 | 24105111 | 24104976 | ID=MS.gene80704.t1.exon9;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24104976 | 24105111 | 24104976 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24105202 | 24105323 | 24105202 | ID=MS.gene80704.t1.exon10;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24105202 | 24105323 | 24105202 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24105774 | 24105968 | 24105774 | ID=MS.gene80704.t1.exon11;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24105774 | 24105968 | 24105774 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24106139 | 24106261 | 24106139 | ID=MS.gene80704.t1.exon12;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24106139 | 24106261 | 24106139 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| chr5.4 | exon | 24106504 | 24106659 | 24106504 | ID=MS.gene80704.t1.exon13;Parent=MS.gene80704.t1 |
| chr5.4 | CDS | 24106504 | 24106659 | 24106504 | ID=cds.MS.gene80704.t1;Parent=MS.gene80704.t1 |
| Gene Sequence |
| Protein sequence |
