Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80795.t1 | XP_003616591.1 | 95.1 | 305 | 7 | 1 | 1 | 305 | 120 | 416 | 6.30E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80795.t1 | G7KGW7 | 95.1 | 305 | 7 | 1 | 1 | 305 | 120 | 416 | 4.6e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene80795 | -0.827546 | 1.47E-54 | -1.69E-46 |
| MS.gene049580 | MS.gene80795 | 0.811868 | 5.64E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene80795 | 0.820575 | 6.38E-53 | -1.69E-46 |
| MS.gene049873 | MS.gene80795 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene04987 | MS.gene80795 | 0.804063 | 2.59E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene80795 | 0.826998 | 1.99E-54 | -1.69E-46 |
| MS.gene051633 | MS.gene80795 | 0.806722 | 7.17E-50 | -1.69E-46 |
| MS.gene051678 | MS.gene80795 | 0.815555 | 8.71E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene80795 | 0.84159 | 4.33E-58 | -1.69E-46 |
| MS.gene052302 | MS.gene80795 | 0.840295 | 9.48E-58 | -1.69E-46 |
| MS.gene052309 | MS.gene80795 | -0.865689 | 4.92E-65 | -1.69E-46 |
| MS.gene052358 | MS.gene80795 | -0.838034 | 3.65E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene80795 | 0.840762 | 7.15E-58 | -1.69E-46 |
| MS.gene052926 | MS.gene80795 | 0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene053294 | MS.gene80795 | 0.851085 | 1.12E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene80795 | 0.826502 | 2.62E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene80795 | 0.830371 | 3.05E-55 | -1.69E-46 |
| MS.gene05548 | MS.gene80795 | 0.833275 | 5.86E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene80795 | 0.840331 | 9.27E-58 | -1.69E-46 |
| MS.gene056091 | MS.gene80795 | 0.867268 | 1.55E-65 | -1.69E-46 |
| MS.gene056631 | MS.gene80795 | 0.804426 | 2.17E-49 | -1.69E-46 |
| MS.gene057079 | MS.gene80795 | 0.886195 | 4.23E-72 | -1.69E-46 |
| MS.gene057555 | MS.gene80795 | 0.841857 | 3.68E-58 | -1.69E-46 |
| MS.gene05795 | MS.gene80795 | 0.81002 | 1.42E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene80795 | 0.813882 | 2.04E-51 | -1.69E-46 |
| MS.gene058498 | MS.gene80795 | 0.813805 | 2.12E-51 | -1.69E-46 |
| MS.gene05953 | MS.gene80795 | 0.808616 | 2.84E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene80795 | 0.844325 | 8.11E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene80795 | 0.814104 | 1.83E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene80795 | 0.806972 | 6.35E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene80795 | 0.837019 | 6.65E-57 | -1.69E-46 |
| MS.gene060879 | MS.gene80795 | 0.83513 | 2.01E-56 | -1.69E-46 |
| MS.gene061040 | MS.gene80795 | -0.832405 | 9.63E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80795.t1 | MTR_5g082130 | 94.754 | 305 | 8 | 1 | 1 | 305 | 120 | 416 | 0.0 | 585 |
| MS.gene80795.t1 | MTR_3g463450 | 40.793 | 353 | 146 | 5 | 1 | 299 | 165 | 508 | 9.97e-78 | 246 |
| MS.gene80795.t1 | MTR_2g103795 | 40.187 | 107 | 64 | 0 | 185 | 291 | 137 | 243 | 6.59e-18 | 82.4 |
| MS.gene80795.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 174 | 347 | 1.01e-17 | 82.8 |
| MS.gene80795.t1 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 112 | 285 | 151 | 324 | 1.26e-17 | 82.4 |
| MS.gene80795.t1 | MTR_7g099260 | 35.849 | 106 | 66 | 1 | 190 | 295 | 240 | 343 | 1.42e-15 | 76.6 |
| MS.gene80795.t1 | MTR_4g114690 | 38.679 | 106 | 65 | 0 | 178 | 283 | 153 | 258 | 1.16e-14 | 73.2 |
| MS.gene80795.t1 | MTR_4g010250 | 36.449 | 107 | 66 | 2 | 185 | 290 | 122 | 227 | 3.13e-14 | 71.6 |
| MS.gene80795.t1 | MTR_1g073230 | 36.458 | 96 | 61 | 0 | 190 | 285 | 276 | 371 | 5.38e-12 | 66.2 |
| MS.gene80795.t1 | MTR_2g103795 | 40.230 | 87 | 52 | 0 | 185 | 271 | 137 | 223 | 5.45e-12 | 64.7 |
| MS.gene80795.t1 | MTR_5g029910 | 33.684 | 95 | 63 | 0 | 189 | 283 | 124 | 218 | 7.80e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80795.t1 | AT3G47080 | 39.210 | 329 | 153 | 7 | 1 | 299 | 198 | 509 | 2.70e-70 | 226 |
| MS.gene80795.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.22e-45 | 161 |
| MS.gene80795.t1 | AT2G29670 | 52.252 | 111 | 52 | 1 | 1 | 111 | 164 | 273 | 1.05e-30 | 121 |
| MS.gene80795.t1 | AT2G29670 | 47.879 | 165 | 83 | 1 | 135 | 299 | 368 | 529 | 2.22e-45 | 161 |
| MS.gene80795.t1 | AT2G29670 | 52.252 | 111 | 52 | 1 | 1 | 111 | 164 | 273 | 1.05e-30 | 121 |
| MS.gene80795.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene80795.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene80795.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene80795.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene80795.t1 | AT1G07280 | 47.561 | 164 | 77 | 2 | 135 | 298 | 389 | 543 | 3.02e-42 | 153 |
| MS.gene80795.t1 | AT1G07280 | 31.329 | 316 | 178 | 6 | 1 | 283 | 187 | 496 | 3.29e-36 | 136 |
| MS.gene80795.t1 | AT1G07280 | 31.379 | 290 | 177 | 5 | 1 | 283 | 187 | 461 | 2.95e-34 | 130 |
| MS.gene80795.t1 | AT1G07280 | 47.191 | 89 | 41 | 1 | 135 | 223 | 389 | 471 | 7.32e-17 | 81.3 |
| MS.gene80795.t1 | AT4G17940 | 37.255 | 102 | 64 | 0 | 182 | 283 | 145 | 246 | 1.90e-15 | 75.5 |
| MS.gene80795.t1 | AT5G20190 | 40.404 | 99 | 59 | 0 | 187 | 285 | 156 | 254 | 1.39e-14 | 73.2 |
| MS.gene80795.t1 | AT1G80130 | 38.384 | 99 | 61 | 0 | 185 | 283 | 163 | 261 | 1.82e-13 | 70.1 |
| MS.gene80795.t1 | AT4G32340 | 38.384 | 99 | 60 | 1 | 188 | 285 | 111 | 209 | 1.25e-11 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5.3:-66455073 | MS.gene80795:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5.3:-66456194 | MS.gene80795:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.232487 | 5.3:-66456410 | MS.gene80795:CDS |
| CAGTGAAACCCCAACTCTTA+TGG | 0.265405 | 5.3:-66456422 | MS.gene80795:CDS |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5.3:+66455011 | None:intergenic |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5.3:-66454989 | MS.gene80795:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5.3:-66456449 | MS.gene80795:CDS |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5.3:+66456142 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5.3:+66454930 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5.3:-66456239 | MS.gene80795:CDS |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5.3:-66456643 | MS.gene80795:CDS |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5.3:-66455029 | MS.gene80795:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5.3:-66456142 | MS.gene80795:CDS |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5.3:-66455072 | MS.gene80795:CDS |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5.3:-66456462 | MS.gene80795:CDS |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5.3:-66455081 | MS.gene80795:CDS |
| TAACATCAACCATAAGAGTT+GGG | 0.438444 | 5.3:+66456413 | None:intergenic |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5.3:-66456353 | MS.gene80795:CDS |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5.3:-66456523 | MS.gene80795:CDS |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5.3:+66455113 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5.3:-66456500 | MS.gene80795:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5.3:-66456479 | MS.gene80795:CDS |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5.3:-66456023 | MS.gene80795:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5.3:-66456512 | MS.gene80795:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5.3:-66456206 | MS.gene80795:CDS |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5.3:-66454981 | MS.gene80795:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5.3:-66456281 | MS.gene80795:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.482870 | 5.3:+66456058 | None:intergenic |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5.3:-66456537 | MS.gene80795:CDS |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5.3:+66456322 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5.3:-66456236 | MS.gene80795:CDS |
| GTTTCTGAGTCCTGTTTCTG+TGG | 0.503600 | 5.3:-66456152 | MS.gene80795:CDS |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5.3:-66456141 | MS.gene80795:CDS |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5.3:-66455042 | MS.gene80795:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5.3:-66456013 | MS.gene80795:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5.3:-66456200 | MS.gene80795:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5.3:-66456207 | MS.gene80795:CDS |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5.3:-66456128 | MS.gene80795:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.544153 | 5.3:+66456412 | None:intergenic |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5.3:-66456252 | MS.gene80795:CDS |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5.3:-66455141 | MS.gene80795:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5.3:-66455091 | MS.gene80795:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5.3:+66454973 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5.3:-66456012 | MS.gene80795:intron |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5.3:-66454978 | MS.gene80795:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5.3:-66456266 | MS.gene80795:CDS |
| AACATCAACCATAAGAGTTG+GGG | 0.584761 | 5.3:+66456414 | None:intergenic |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5.3:+66456014 | None:intergenic |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5.3:-66456140 | MS.gene80795:CDS |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5.3:-66456536 | MS.gene80795:CDS |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5.3:-66455129 | MS.gene80795:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5.3:-66456313 | MS.gene80795:CDS |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5.3:-66456205 | MS.gene80795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTCTATATAATAAAACTTA+AGG | + | chr5.3:66455987-66456006 | None:intergenic | 15.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | chr5.3:66456645-66456664 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | chr5.3:66455594-66455613 | MS.gene80795:intron | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | chr5.3:66456392-66456411 | None:intergenic | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | chr5.3:66455875-66455894 | MS.gene80795:intron | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | chr5.3:66456390-66456409 | MS.gene80795:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | chr5.3:66456280-66456299 | None:intergenic | 20.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | chr5.3:66455110-66455129 | MS.gene80795:CDS | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | chr5.3:66455712-66455731 | None:intergenic | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | chr5.3:66454929-66454948 | MS.gene80795:CDS | 25.0% |
| ! | ACATTATGCTTATGTATGTT+AGG | - | chr5.3:66456004-66456023 | MS.gene80795:intron | 25.0% |
| ! | ATGTATGTTAGGTACAAAAA+AGG | - | chr5.3:66456015-66456034 | MS.gene80795:CDS | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | chr5.3:66455700-66455719 | MS.gene80795:intron | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | chr5.3:66455219-66455238 | MS.gene80795:intron | 25.0% |
| ! | TTAGATGTTGTTGCATTATA+TGG | - | chr5.3:66455623-66455642 | MS.gene80795:intron | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | chr5.3:66455760-66455779 | None:intergenic | 25.0% |
| !!! | TGATTGGTTAGTTTTGAATA+AGG | - | chr5.3:66456231-66456250 | MS.gene80795:CDS | 25.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | chr5.3:66455035-66455054 | MS.gene80795:CDS | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | chr5.3:66455366-66455385 | MS.gene80795:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | chr5.3:66455333-66455352 | MS.gene80795:intron | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | chr5.3:66455036-66455055 | MS.gene80795:CDS | 30.0% | |
| ACTTCATTCATCAATGATGA+AGG | + | chr5.3:66455253-66455272 | None:intergenic | 30.0% | |
| ATAACATCAACCATAAGAGT+TGG | + | chr5.3:66455163-66455182 | None:intergenic | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | chr5.3:66456564-66456583 | None:intergenic | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | chr5.3:66455093-66455112 | MS.gene80795:CDS | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | chr5.3:66456500-66456519 | MS.gene80795:CDS | 30.0% | |
| TAACATCAACCATAAGAGTT+GGG | + | chr5.3:66455162-66455181 | None:intergenic | 30.0% | |
| TCAAAATCTGCGTTGAAATA+TGG | - | chr5.3:66456143-66456162 | MS.gene80795:CDS | 30.0% | |
| TGTGGATAAGAAAGGATAAT+TGG | - | chr5.3:66456499-66456518 | MS.gene80795:CDS | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | chr5.3:66455259-66455278 | MS.gene80795:intron | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | chr5.3:66455162-66455181 | MS.gene80795:intron | 30.0% |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | chr5.3:66455123-66455142 | MS.gene80795:CDS | 30.0% |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | chr5.3:66456491-66456510 | MS.gene80795:CDS | 30.0% |
| !!! | AGAACATGGTTTTAATTAGC+AGG | + | chr5.3:66455746-66455765 | None:intergenic | 30.0% |
| !!! | ATGGTTTTAAATTGCAGTCA+CGG | - | chr5.3:66455642-66455661 | MS.gene80795:intron | 30.0% |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | chr5.3:66455886-66455905 | MS.gene80795:intron | 30.0% |
| AAAGAAGGAGTTAACAGAAG+AGG | - | chr5.3:66455306-66455325 | MS.gene80795:intron | 35.0% | |
| AACATCAACCATAAGAGTTG+GGG | + | chr5.3:66455161-66455180 | None:intergenic | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | chr5.3:66456220-66456239 | None:intergenic | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | chr5.3:66455367-66455386 | MS.gene80795:intron | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | chr5.3:66456215-66456234 | MS.gene80795:CDS | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | chr5.3:66455365-66455384 | MS.gene80795:intron | 35.0% | |
| CACGGTTATGCTATAAAATG+CGG | - | chr5.3:66455660-66455679 | MS.gene80795:intron | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | chr5.3:66455517-66455536 | None:intergenic | 35.0% | |
| TCAAGATGAGTGTGTAAAGA+AGG | - | chr5.3:66455291-66455310 | MS.gene80795:intron | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | chr5.3:66456214-66456233 | None:intergenic | 35.0% | |
| TTGCTCCTTTATGCAATGAA+GGG | - | chr5.3:66455814-66455833 | MS.gene80795:intron | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | chr5.3:66455560-66455579 | MS.gene80795:intron | 35.0% | |
| TTTGCTCCTTTATGCAATGA+AGG | - | chr5.3:66455813-66455832 | MS.gene80795:intron | 35.0% | |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | chr5.3:66455901-66455920 | None:intergenic | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | chr5.3:66456583-66456602 | MS.gene80795:CDS | 35.0% |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | chr5.3:66456481-66456500 | MS.gene80795:CDS | 35.0% |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | chr5.3:66455072-66455091 | MS.gene80795:CDS | 35.0% |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | chr5.3:66455885-66455904 | MS.gene80795:intron | 35.0% |
| ATCACCCCTTCATTGCATAA+AGG | + | chr5.3:66455822-66455841 | None:intergenic | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | chr5.3:66455320-66455339 | MS.gene80795:intron | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | chr5.3:66456203-66456222 | None:intergenic | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | chr5.3:66455561-66455580 | None:intergenic | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | chr5.3:66456085-66456104 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | chr5.3:66455559-66455578 | MS.gene80795:intron | 40.0% | |
| GATTGAAGGGGATCAATATG+AGG | - | chr5.3:66455444-66455463 | MS.gene80795:intron | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | chr5.3:66456530-66456549 | MS.gene80795:CDS | 40.0% | |
| GCTGTGATTACACACAATTC+AGG | + | chr5.3:66456042-66456061 | None:intergenic | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | chr5.3:66456077-66456096 | MS.gene80795:CDS | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | chr5.3:66455336-66455355 | MS.gene80795:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | chr5.3:66455549-66455568 | MS.gene80795:intron | 40.0% | |
| TGCTCCTTTATGCAATGAAG+GGG | - | chr5.3:66455815-66455834 | MS.gene80795:intron | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | chr5.3:66455049-66455068 | MS.gene80795:CDS | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | chr5.3:66455060-66455079 | MS.gene80795:CDS | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | chr5.3:66455432-66455451 | MS.gene80795:intron | 40.0% |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | chr5.3:66455431-66455450 | MS.gene80795:intron | 40.0% |
| AGAATTGAGGGGTGAGGATT+TGG | - | chr5.3:66455378-66455397 | MS.gene80795:intron | 45.0% | |
| ATGCGGTCGATGTTGTTCAT+AGG | - | chr5.3:66455677-66455696 | MS.gene80795:intron | 45.0% | |
| CAGTGAAACCCCAACTCTTA+TGG | - | chr5.3:66455150-66455169 | MS.gene80795:CDS | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | chr5.3:66455433-66455452 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | chr5.3:66456431-66456450 | MS.gene80795:CDS | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | chr5.3:66456462-66456481 | None:intergenic | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | chr5.3:66456065-66456084 | None:intergenic | 45.0% | |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | chr5.3:66456594-66456613 | MS.gene80795:CDS | 45.0% |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | chr5.3:66455430-66455449 | MS.gene80795:intron | 45.0% |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | chr5.3:66456591-66456610 | MS.gene80795:CDS | 45.0% |
| !! | GTTTCTGAGTCCTGTTTCTG+TGG | - | chr5.3:66455420-66455439 | MS.gene80795:intron | 45.0% |
| GCAAAGAGAATTGAGGGGTG+AGG | - | chr5.3:66455372-66455391 | MS.gene80795:intron | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | chr5.3:66456064-66456083 | None:intergenic | 50.0% | |
| GTTGTCCACCAGTGTTCCAA+AGG | + | chr5.3:66456602-66456621 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | chr5.3:66456543-66456562 | MS.gene80795:CDS | 50.0% |
| AGTGCTAGTGGAGTCACCAG+AGG | - | chr5.3:66456443-66456462 | MS.gene80795:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66454920 | 66456674 | 66454920 | ID=MS.gene80795 |
| chr5.3 | mRNA | 66454920 | 66456674 | 66454920 | ID=MS.gene80795.t1;Parent=MS.gene80795 |
| chr5.3 | exon | 66456013 | 66456674 | 66456013 | ID=MS.gene80795.t1.exon1;Parent=MS.gene80795.t1 |
| chr5.3 | CDS | 66456013 | 66456674 | 66456013 | ID=cds.MS.gene80795.t1;Parent=MS.gene80795.t1 |
| chr5.3 | exon | 66454920 | 66455175 | 66454920 | ID=MS.gene80795.t1.exon2;Parent=MS.gene80795.t1 |
| chr5.3 | CDS | 66454920 | 66455175 | 66454920 | ID=cds.MS.gene80795.t1;Parent=MS.gene80795.t1 |
| Gene Sequence |
| Protein sequence |
