Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80895.t1 | XP_013451330.2 | 99.7 | 389 | 1 | 0 | 1 | 389 | 7 | 395 | 1.80E-227 | 798.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80895.t1 | O82567 | 82.0 | 389 | 70 | 0 | 1 | 389 | 1 | 389 | 7.7e-195 | 681.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80895.t1 | A0A396HGS3 | 99.7 | 389 | 1 | 0 | 1 | 389 | 7 | 395 | 1.3e-227 | 798.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene80895 | 0.813653 | 2.30E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene80895 | 0.809025 | 2.32E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene80895 | 0.800355 | 1.50E-48 | -1.69E-46 |
| MS.gene050020 | MS.gene80895 | 0.816105 | 6.56E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene80895 | 0.801006 | 1.10E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene80895 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene80895 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene80895 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene80895 | 0.8141 | 1.83E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene80895 | 0.855845 | 4.80E-62 | -1.69E-46 |
| MS.gene051181 | MS.gene80895 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene80895 | 0.833694 | 4.60E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene80895 | 0.803233 | 3.84E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene80895 | 0.825025 | 5.87E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene80895 | 0.804812 | 1.80E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene80895 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene80895 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene80895 | 0.823567 | 1.29E-53 | -1.69E-46 |
| MS.gene052612 | MS.gene80895 | 0.810675 | 1.02E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene80895 | 0.802399 | 5.72E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene80895 | 0.822131 | 2.79E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene80895 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene80895 | -0.802573 | 5.26E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene80895 | 0.810455 | 1.14E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene80895 | 0.820441 | 6.85E-53 | -1.69E-46 |
| MS.gene053883 | MS.gene80895 | 0.821932 | 3.10E-53 | -1.69E-46 |
| MS.gene053998 | MS.gene80895 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene80895 | 0.804833 | 1.79E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene80895 | 0.803837 | 2.88E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene80895 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene055512 | MS.gene80895 | 0.808907 | 2.46E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene80895 | 0.813969 | 1.96E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene80895 | 0.829452 | 5.11E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene80895 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene80895 | 0.820434 | 6.87E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene80895 | 0.804442 | 2.16E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene80895 | 0.836301 | 1.01E-56 | -1.69E-46 |
| MS.gene056553 | MS.gene80895 | 0.830659 | 2.59E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene80895 | 0.814153 | 1.78E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene80895 | 0.817428 | 3.31E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene80895 | 0.820984 | 5.14E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene80895 | 0.817739 | 2.82E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene80895 | 0.808735 | 2.68E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene80895 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene80895 | 0.800699 | 1.28E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene80895 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene80895 | 0.807262 | 5.51E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene80895 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene80895 | 0.802044 | 6.76E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene80895 | 0.801817 | 7.53E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene80895 | 0.83215 | 1.11E-55 | -1.69E-46 |
| MS.gene060521 | MS.gene80895 | 0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene80895 | 0.810112 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80895 | MS.gene074197 | PPI |
| MS.gene80895 | MS.gene074510 | PPI |
| MS.gene074510 | MS.gene80895 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80895.t1 | MTR_6g018970 | 99.707 | 341 | 1 | 0 | 49 | 389 | 1 | 341 | 0.0 | 692 |
| MS.gene80895.t1 | MTR_3g009730 | 86.047 | 387 | 54 | 0 | 3 | 389 | 2 | 388 | 0.0 | 647 |
| MS.gene80895.t1 | MTR_3g009730 | 85.714 | 343 | 49 | 0 | 47 | 389 | 11 | 353 | 0.0 | 568 |
| MS.gene80895.t1 | MTR_3g009730 | 85.337 | 341 | 50 | 0 | 49 | 389 | 35 | 375 | 0.0 | 559 |
| MS.gene80895.t1 | MTR_6g018970 | 99.606 | 254 | 1 | 0 | 136 | 389 | 1 | 254 | 0.0 | 514 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80895.t1 | AT1G13560 | 82.005 | 389 | 70 | 0 | 1 | 389 | 1 | 389 | 0.0 | 680 |
| MS.gene80895.t1 | AT3G25585 | 79.177 | 389 | 81 | 0 | 1 | 389 | 1 | 389 | 0.0 | 646 |
| MS.gene80895.t1 | AT3G25585 | 79.177 | 389 | 81 | 0 | 1 | 389 | 1 | 389 | 0.0 | 646 |
| MS.gene80895.t1 | AT3G25585 | 79.177 | 389 | 81 | 0 | 1 | 389 | 1 | 389 | 0.0 | 646 |
| MS.gene80895.t1 | AT1G13560 | 80.645 | 341 | 66 | 0 | 49 | 389 | 1 | 341 | 0.0 | 585 |
| MS.gene80895.t1 | AT1G13560 | 80.117 | 342 | 68 | 0 | 48 | 389 | 5 | 346 | 0.0 | 583 |
| MS.gene80895.t1 | AT3G25585 | 78.592 | 341 | 73 | 0 | 49 | 389 | 1 | 341 | 0.0 | 558 |
| MS.gene80895.t1 | AT3G25585 | 78.592 | 341 | 73 | 0 | 49 | 389 | 1 | 341 | 0.0 | 558 |
| MS.gene80895.t1 | AT3G25585 | 78.338 | 337 | 73 | 0 | 53 | 389 | 1 | 337 | 0.0 | 551 |
Find 83 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTGAAGCACTTGCTTT+TGG | 0.146979 | 6.3:+14919483 | MS.gene80895:intron |
| CTTGGTTACTGTGCATTTAC+AGG | 0.204431 | 6.3:+14922418 | MS.gene80895:CDS |
| CTGATACTTCCTGTTGTAAA+TGG | 0.239203 | 6.3:+14919780 | MS.gene80895:CDS |
| GACAACTAAATGTGGATAAT+TGG | 0.245221 | 6.3:-14921167 | None:intergenic |
| CAGTGTTATCAATGTTTATA+AGG | 0.272486 | 6.3:+14920875 | MS.gene80895:intron |
| AATGAGAGACTAGTTCTTCT+TGG | 0.279735 | 6.3:+14922400 | MS.gene80895:CDS |
| CATTTAGTTGTCATGGGAAC+TGG | 0.293650 | 6.3:+14921178 | MS.gene80895:CDS |
| AAGCAAAGGTTTACCATGTT+TGG | 0.294075 | 6.3:-14918299 | None:intergenic |
| AATATGTACTACAGCCCTTC+TGG | 0.298427 | 6.3:+14917534 | MS.gene80895:CDS |
| ATAGAGAGAATGGGTTATAT+TGG | 0.305875 | 6.3:+14917446 | None:intergenic |
| CGAATTCTTCAAGTCCATTA+GGG | 0.318784 | 6.3:+14919248 | MS.gene80895:CDS |
| GAATGGTGGGCTCAGCAATT+TGG | 0.323501 | 6.3:+14920144 | MS.gene80895:CDS |
| ACGAATTCTTCAAGTCCATT+AGG | 0.326269 | 6.3:+14919247 | MS.gene80895:CDS |
| CCCTGGGAATATATTGCTTC+AGG | 0.345121 | 6.3:+14922811 | MS.gene80895:CDS |
| TATCCGTTTGTTGTCCTTGT+CGG | 0.376290 | 6.3:+14921018 | MS.gene80895:CDS |
| ATGGGAACTGGGCTTACTTT+CGG | 0.380940 | 6.3:+14921190 | MS.gene80895:CDS |
| AGAGTCTTACCAGAAATAAA+AGG | 0.386724 | 6.3:-14920195 | None:intergenic |
| TTGTGTTTGATGATAGCTTT+TGG | 0.409890 | 6.3:+14920589 | MS.gene80895:CDS |
| CCAGATATACTCACCTCAAT+TGG | 0.413495 | 6.3:+14918711 | MS.gene80895:intron |
| TGATCGAACAGCTCCCCTAA+TGG | 0.416067 | 6.3:-14919262 | None:intergenic |
| CTACTATTGTCTGCATTGCT+TGG | 0.420160 | 6.3:+14918440 | MS.gene80895:CDS |
| TGTTCCATTGCAGGATAACT+AGG | 0.421949 | 6.3:+14923415 | MS.gene80895:intron |
| TGTGTGGAAGAAGTACTTTC+TGG | 0.423309 | 6.3:+14919517 | MS.gene80895:CDS |
| AAGGTTGTGAAGTCGAGAAA+TGG | 0.434652 | 6.3:+14920894 | MS.gene80895:CDS |
| TTCTACAGGTGCTGAATGGT+GGG | 0.460804 | 6.3:+14920131 | MS.gene80895:intron |
| TTTCTACAGGTGCTGAATGG+TGG | 0.462100 | 6.3:+14920130 | MS.gene80895:intron |
| ACAATATAGCACTGTATGTC+GGG | 0.464539 | 6.3:-14920570 | None:intergenic |
| TAGACATTTGATGCTGTTGA+TGG | 0.466711 | 6.3:+14919208 | MS.gene80895:intron |
| TTATCCACATTTAGTTGTCA+TGG | 0.467060 | 6.3:+14921171 | MS.gene80895:CDS |
| TCCGTAGGTCCATTTACAAC+AGG | 0.488560 | 6.3:-14919789 | None:intergenic |
| CTGCATAGATACAAATATAG+TGG | 0.490935 | 6.3:+14917488 | MS.gene80895:CDS |
| ACCTGAAGCAATATATTCCC+AGG | 0.495698 | 6.3:-14922812 | None:intergenic |
| TGTGCAAAATGAACCCATCT+TGG | 0.496233 | 6.3:-14918745 | None:intergenic |
| ATGGGTTATATTGGTTCTCA+TGG | 0.500174 | 6.3:+14917455 | MS.gene80895:CDS |
| AACAGGAAGTATCAGTGTAT+TGG | 0.501512 | 6.3:-14919772 | None:intergenic |
| TTTGTTCCAGATAACTCTGA+TGG | 0.504877 | 6.3:+14918406 | MS.gene80895:intron |
| TTAGGGGAGCTGTTCGATCA+TGG | 0.507201 | 6.3:+14919265 | MS.gene80895:CDS |
| TATCCACATTTAGTTGTCAT+GGG | 0.514355 | 6.3:+14921172 | MS.gene80895:CDS |
| ACTAGTCTCTCATTAACTAA+AGG | 0.516957 | 6.3:-14922391 | None:intergenic |
| ATTTAGTTGTCATGGGAACT+GGG | 0.520723 | 6.3:+14921179 | MS.gene80895:CDS |
| TCATGAAATTACGAATGCCC+TGG | 0.523889 | 6.3:+14922794 | MS.gene80895:CDS |
| GCTTACTTTCGGATATCTTG+TGG | 0.528578 | 6.3:+14921201 | MS.gene80895:CDS |
| GTGAACAAAGCGAGTCCAGA+AGG | 0.529233 | 6.3:-14917549 | None:intergenic |
| TCCTGTTGTAAATGGACCTA+CGG | 0.530088 | 6.3:+14919788 | MS.gene80895:CDS |
| TGGACACAGCTCCTCCAAGA+TGG | 0.531879 | 6.3:+14918731 | MS.gene80895:CDS |
| CACAATATAGCACTGTATGT+CGG | 0.544277 | 6.3:-14920571 | None:intergenic |
| CCTCCGACAAGGACAACAAA+CGG | 0.544347 | 6.3:-14921021 | None:intergenic |
| TTGTCGGAGGAGTGCTTATG+TGG | 0.545286 | 6.3:+14921034 | MS.gene80895:CDS |
| CCGTTTGTTGTCCTTGTCGG+AGG | 0.551272 | 6.3:+14921021 | MS.gene80895:CDS |
| CACTTATGTGATGAACCAAA+AGG | 0.551574 | 6.3:+14921853 | MS.gene80895:CDS |
| CTTGCATCAAGGCTAAATGA+TGG | 0.552012 | 6.3:+14922263 | MS.gene80895:CDS |
| TTGCTAATGCACTTGCATCA+AGG | 0.554145 | 6.3:+14922252 | MS.gene80895:CDS |
| CATGAAATTACGAATGCCCT+GGG | 0.561598 | 6.3:+14922795 | MS.gene80895:CDS |
| TTGTTCCAGATAACTCTGAT+GGG | 0.566961 | 6.3:+14918407 | MS.gene80895:intron |
| AGTACTCACGGCATCCATAG+AGG | 0.567916 | 6.3:-14917578 | None:intergenic |
| GGACACAGCTCCTCCAAGAT+GGG | 0.571189 | 6.3:+14918732 | MS.gene80895:CDS |
| GGAGGAGCTGTGTCCAATTG+AGG | 0.580594 | 6.3:-14918724 | None:intergenic |
| TTGCATCAAGGCTAAATGAT+GGG | 0.587433 | 6.3:+14922264 | MS.gene80895:CDS |
| GCAAAATGAACCCATCTTGG+AGG | 0.587784 | 6.3:-14918742 | None:intergenic |
| CTTACCATTGCTAACGCAAG+AGG | 0.592076 | 6.3:-14920924 | None:intergenic |
| AGACATTTGATGCTGTTGAT+GGG | 0.598242 | 6.3:+14919209 | MS.gene80895:intron |
| GAAGAAGTACTTTCTGGTGG+TGG | 0.603104 | 6.3:+14919523 | MS.gene80895:CDS |
| TGATGCAAGTGCATTAGCAA+TGG | 0.604002 | 6.3:-14922249 | None:intergenic |
| CCATTGCAGGATAACTAGGA+AGG | 0.604804 | 6.3:+14923419 | MS.gene80895:intron |
| TATGCCTCTTGCGTTAGCAA+TGG | 0.621209 | 6.3:+14920920 | MS.gene80895:CDS |
| TGGCAAGTGGTAGATACATG+AGG | 0.625727 | 6.3:-14922229 | None:intergenic |
| GTTGTAAATGGACCTACGGA+GGG | 0.637088 | 6.3:+14919792 | MS.gene80895:CDS |
| ACATACTTGAGTGCGACGGT+TGG | 0.638301 | 6.3:-14920619 | None:intergenic |
| GAATTCTTCAAGTCCATTAG+GGG | 0.640800 | 6.3:+14919249 | MS.gene80895:CDS |
| TGAACAAAGCGAGTCCAGAA+GGG | 0.641743 | 6.3:-14917548 | None:intergenic |
| CTATACATACTTGAGTGCGA+CGG | 0.648516 | 6.3:-14920623 | None:intergenic |
| GGCAAGTGGTAGATACATGA+GGG | 0.648543 | 6.3:-14922228 | None:intergenic |
| TTTGGGAGCACATCCATGTG+TGG | 0.648878 | 6.3:+14919501 | MS.gene80895:CDS |
| GTTCCCATGACAACTAAATG+TGG | 0.649879 | 6.3:-14921175 | None:intergenic |
| CCTGAAGCAATATATTCCCA+GGG | 0.650536 | 6.3:-14922811 | None:intergenic |
| ACATAAGCACTCCTCCGACA+AGG | 0.651566 | 6.3:-14921032 | None:intergenic |
| GAAAGTACTTCTTCCACACA+TGG | 0.654787 | 6.3:-14919514 | None:intergenic |
| TGGTGTAGATCATTCCTATG+TGG | 0.655808 | 6.3:+14917508 | MS.gene80895:CDS |
| AGTGCATTAGCAATGGCAAG+TGG | 0.672892 | 6.3:-14922242 | None:intergenic |
| TGTTGTAAATGGACCTACGG+AGG | 0.673487 | 6.3:+14919791 | MS.gene80895:CDS |
| TAATTGGCTATGATGTCAGA+TGG | 0.673929 | 6.3:-14921151 | None:intergenic |
| ATTATCATAAGACCCTCCGT+AGG | 0.691029 | 6.3:-14919804 | None:intergenic |
| GTGGAAGAAGTACTTTCTGG+TGG | 0.727462 | 6.3:+14919520 | MS.gene80895:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATAACTTATGTAAA+TGG | + | chr6.3:14919987-14920006 | MS.gene80895:intron | 10.0% |
| !! | AATATTTCTTACAAAATAAA+TGG | - | chr6.3:14920368-14920387 | None:intergenic | 10.0% |
| !! | TTAACATTATTATTATCTAT+TGG | + | chr6.3:14920845-14920864 | MS.gene80895:intron | 10.0% |
| !! | TTGAAAATTTATTAATATCA+GGG | + | chr6.3:14922633-14922652 | MS.gene80895:intron | 10.0% |
| !! | AAATTAATCAGCAATATTAA+AGG | - | chr6.3:14918619-14918638 | None:intergenic | 15.0% |
| !! | AATATAGGAACTAAATAAAA+AGG | - | chr6.3:14918909-14918928 | None:intergenic | 15.0% |
| !! | AATTAAATAACATCAATCAA+CGG | - | chr6.3:14922318-14922337 | None:intergenic | 15.0% |
| !! | CTTGAAAATTTATTAATATC+AGG | + | chr6.3:14922632-14922651 | MS.gene80895:intron | 15.0% |
| !! | TAATAACAGAATGAAAAATA+CGG | - | chr6.3:14919304-14919323 | None:intergenic | 15.0% |
| !! | TAATATCTCTTTAATGAATT+TGG | - | chr6.3:14922150-14922169 | None:intergenic | 15.0% |
| !! | TTATTTCAAATTATGAAAGT+TGG | - | chr6.3:14921658-14921677 | None:intergenic | 15.0% |
| !!! | ATTTTTGTTAAAGATTCTTA+TGG | + | chr6.3:14919125-14919144 | MS.gene80895:intron | 15.0% |
| !!! | GAAATTGTTTGATATATTTT+TGG | + | chr6.3:14922361-14922380 | MS.gene80895:intron | 15.0% |
| !!! | GTAAAAAAATGTTTTTAAGT+GGG | + | chr6.3:14917678-14917697 | MS.gene80895:intron | 15.0% |
| !! | AAATTTATTAATATCAGGGA+TGG | + | chr6.3:14922637-14922656 | MS.gene80895:intron | 20.0% |
| !! | AAGTATATATGTATTCATGT+CGG | + | chr6.3:14923141-14923160 | MS.gene80895:intron | 20.0% |
| !! | AATAAAAGTAAAAGGATTGT+AGG | - | chr6.3:14918195-14918214 | None:intergenic | 20.0% |
| !! | AATTTACTAACGAAATTATG+TGG | - | chr6.3:14921633-14921652 | None:intergenic | 20.0% |
| !! | CACGATATTTCTTTAAATAT+AGG | - | chr6.3:14918924-14918943 | None:intergenic | 20.0% |
| !! | CATTACTTGAAAATGATTAT+TGG | + | chr6.3:14920462-14920481 | MS.gene80895:intron | 20.0% |
| !! | CGAAATAAAGAATATAAAGA+CGG | - | chr6.3:14920221-14920240 | None:intergenic | 20.0% |
| !! | GCAAAATAAAAATTAATGTG+AGG | - | chr6.3:14918543-14918562 | None:intergenic | 20.0% |
| !! | TATCTGCATAAATATCTAAA+AGG | - | chr6.3:14919953-14919972 | None:intergenic | 20.0% |
| !! | TCACTTATAAACACTTTATT+AGG | - | chr6.3:14917888-14917907 | None:intergenic | 20.0% |
| !! | TTACAGTAACATTTATCTTA+TGG | + | chr6.3:14922339-14922358 | MS.gene80895:intron | 20.0% |
| !!! | AATATTGCTGATTAATTTCA+TGG | + | chr6.3:14918621-14918640 | MS.gene80895:intron | 20.0% |
| !!! | ATAAAGAAGTCTTTTGAAAT+TGG | + | chr6.3:14918881-14918900 | MS.gene80895:intron | 20.0% |
| !!! | ATATTTTTGACTATATTGCA+GGG | + | chr6.3:14919363-14919382 | MS.gene80895:intron | 20.0% |
| !!! | ATCAATTACGTTTATTCTTT+TGG | + | chr6.3:14922537-14922556 | MS.gene80895:intron | 20.0% |
| !!! | ATGACATTATTTTCTTTTGA+TGG | - | chr6.3:14919447-14919466 | None:intergenic | 20.0% |
| !!! | ATTGATGATTTTCAATTTCA+TGG | - | chr6.3:14922523-14922542 | None:intergenic | 20.0% |
| !!! | CGTAAAAAAATGTTTTTAAG+TGG | + | chr6.3:14917677-14917696 | MS.gene80895:intron | 20.0% |
| !!! | CGTCTTTATATTCTTTATTT+CGG | + | chr6.3:14920219-14920238 | MS.gene80895:intron | 20.0% |
| !!! | TGATTTTTGAAATTTCTTTC+CGG | + | chr6.3:14920536-14920555 | MS.gene80895:intron | 20.0% |
| !!! | TGTTGTAATTATTTTTCTAC+AGG | + | chr6.3:14920117-14920136 | MS.gene80895:intron | 20.0% |
| !!! | TTTTTGTTGAACTTTGTTTT+TGG | + | chr6.3:14922947-14922966 | MS.gene80895:intron | 20.0% |
| ! | AACCTAAAAGAAATTGTTTC+AGG | - | chr6.3:14920740-14920759 | None:intergenic | 25.0% |
| ! | AATAAGTATACAGAAACACA+AGG | - | chr6.3:14920792-14920811 | None:intergenic | 25.0% |
| ! | ACAACTATATGTGTATCATT+TGG | + | chr6.3:14923256-14923275 | MS.gene80895:intron | 25.0% |
| ! | AGCATGAAATTTACCAAAAT+CGG | - | chr6.3:14918840-14918859 | None:intergenic | 25.0% |
| ! | CAACTTGCGAAAATTTAAAA+CGG | + | chr6.3:14922496-14922515 | MS.gene80895:intron | 25.0% |
| ! | CAGATGATACTACAAAATAA+AGG | - | chr6.3:14918325-14918344 | None:intergenic | 25.0% |
| ! | CAGTGTTATCAATGTTTATA+AGG | + | chr6.3:14920875-14920894 | MS.gene80895:intron | 25.0% |
| ! | CTAAAACACTTCCATAAATA+CGG | + | chr6.3:14919025-14919044 | MS.gene80895:intron | 25.0% |
| ! | CTACATCTATTCTAACAATT+CGG | + | chr6.3:14919654-14919673 | MS.gene80895:intron | 25.0% |
| ! | GATTCTTATGGTTTATCAAT+AGG | + | chr6.3:14919137-14919156 | MS.gene80895:intron | 25.0% |
| ! | TAAAAATTAATGTGAGGAAC+AGG | - | chr6.3:14918537-14918556 | None:intergenic | 25.0% |
| ! | TCAAATACAATGCTATATAC+AGG | - | chr6.3:14919610-14919629 | None:intergenic | 25.0% |
| ! | TGCAATATCAATGATTAAAC+CGG | - | chr6.3:14922453-14922472 | None:intergenic | 25.0% |
| ! | TTACTTCATTAGATACTCAT+AGG | - | chr6.3:14922025-14922044 | None:intergenic | 25.0% |
| ! | TTATAGGAAAGAATTCCAAT+AGG | - | chr6.3:14920957-14920976 | None:intergenic | 25.0% |
| ! | TTGGTTAAATTCTCATATTG+TGG | + | chr6.3:14918794-14918813 | MS.gene80895:intron | 25.0% |
| ! | TTTACGAAGTTATTTGATGA+AGG | + | chr6.3:14920810-14920829 | MS.gene80895:intron | 25.0% |
| !! | AACCTGAAACAATTTCTTTT+AGG | + | chr6.3:14920735-14920754 | MS.gene80895:intron | 25.0% |
| !! | ACTTAAATGATTTTGTTGCA+GGG | + | chr6.3:14921117-14921136 | MS.gene80895:intron | 25.0% |
| !! | ATATCTGCAGTTACATTTTA+TGG | + | chr6.3:14919549-14919568 | MS.gene80895:CDS | 25.0% |
| !! | ATATTCTTTATTTCGGACAA+AGG | + | chr6.3:14920226-14920245 | MS.gene80895:intron | 25.0% |
| !! | CTATTATGTTTTCGACTTTA+TGG | - | chr6.3:14918504-14918523 | None:intergenic | 25.0% |
| !! | GGTGTCTTTATTAAGAATTT+TGG | + | chr6.3:14923225-14923244 | MS.gene80895:intron | 25.0% |
| !! | TACTTAAATGATTTTGTTGC+AGG | + | chr6.3:14921116-14921135 | MS.gene80895:intron | 25.0% |
| !!! | ATTGTTTCAGGTTTAAAAGT+TGG | - | chr6.3:14920728-14920747 | None:intergenic | 25.0% |
| !!! | GATATTTTTGACTATATTGC+AGG | + | chr6.3:14919362-14919381 | MS.gene80895:intron | 25.0% |
| !!! | TGGTATTAAGCTGTTTTATT+TGG | + | chr6.3:14921896-14921915 | MS.gene80895:intron | 25.0% |
| !!! | TGTTTGATATATTTTTGGCA+GGG | + | chr6.3:14922366-14922385 | MS.gene80895:intron | 25.0% |
| !!! | TTATGGATTAGGATGATTAA+TGG | - | chr6.3:14918487-14918506 | None:intergenic | 25.0% |
| !!! | TTGGATAAACAGCTTATTTT+AGG | + | chr6.3:14921305-14921324 | MS.gene80895:intron | 25.0% |
| !!! | TTGTTTGATATATTTTTGGC+AGG | + | chr6.3:14922365-14922384 | MS.gene80895:intron | 25.0% |
| AAAGAGAAAAAACCACACTT+AGG | - | chr6.3:14923200-14923219 | None:intergenic | 30.0% | |
| AAAGCTTAACACCGTATTTA+TGG | - | chr6.3:14919039-14919058 | None:intergenic | 30.0% | |
| AAAGGCAACCAATTCAAAAA+AGG | - | chr6.3:14920180-14920199 | None:intergenic | 30.0% | |
| AAGAAATTGACGAAGTCTAA+GGG | - | chr6.3:14921578-14921597 | None:intergenic | 30.0% | |
| ACAACAATAACAATACGCAT+TGG | - | chr6.3:14920103-14920122 | None:intergenic | 30.0% | |
| ACAACTTATGACATATCCAT+TGG | - | chr6.3:14921480-14921499 | None:intergenic | 30.0% | |
| ACCATAAAAACTCACAGAAA+GGG | - | chr6.3:14919867-14919886 | None:intergenic | 30.0% | |
| ACGATCATAAGCTATATCAT+TGG | + | chr6.3:14918362-14918381 | MS.gene80895:intron | 30.0% | |
| ACGCGGATATATGAAATAAA+AGG | - | chr6.3:14918244-14918263 | None:intergenic | 30.0% | |
| AGAGTCTTACCAGAAATAAA+AGG | - | chr6.3:14920198-14920217 | None:intergenic | 30.0% | |
| AGGAGTTAGATTGTACATAA+AGG | - | chr6.3:14921776-14921795 | None:intergenic | 30.0% | |
| AGTATACTAAGAAACTACCA+AGG | - | chr6.3:14921723-14921742 | None:intergenic | 30.0% | |
| ATAAGCTGTTTATCCAAACA+AGG | - | chr6.3:14921302-14921321 | None:intergenic | 30.0% | |
| ATATCCTTAAGGTATAGAGA+GGG | + | chr6.3:14918099-14918118 | MS.gene80895:intron | 30.0% | |
| ATATGAGAATTTAACCAACC+TGG | - | chr6.3:14918792-14918811 | None:intergenic | 30.0% | |
| CAACAAAGTAACCAGATTAT+AGG | - | chr6.3:14920973-14920992 | None:intergenic | 30.0% | |
| CGAATTGTTAGAATAGATGT+AGG | - | chr6.3:14919656-14919675 | None:intergenic | 30.0% | |
| CTACAAAATAAAGGAAGCAA+AGG | - | chr6.3:14918316-14918335 | None:intergenic | 30.0% | |
| CTGCATAGATACAAATATAG+TGG | + | chr6.3:14917488-14917507 | MS.gene80895:CDS | 30.0% | |
| CTTGGCGAGAATAAAAAAAT+AGG | - | chr6.3:14919069-14919088 | None:intergenic | 30.0% | |
| GACAACTAAATGTGGATAAT+TGG | - | chr6.3:14921170-14921189 | None:intergenic | 30.0% | |
| GCAATATCAATGATTAAACC+GGG | - | chr6.3:14922452-14922471 | None:intergenic | 30.0% | |
| GGTTTAATCATTGATATTGC+AGG | + | chr6.3:14922452-14922471 | MS.gene80895:intron | 30.0% | |
| GTATACTAAGAAACTACCAA+GGG | - | chr6.3:14921722-14921741 | None:intergenic | 30.0% | |
| TAAGAAATTGACGAAGTCTA+AGG | - | chr6.3:14921579-14921598 | None:intergenic | 30.0% | |
| TAAGCAATTGTGAAACTGTT+TGG | - | chr6.3:14921517-14921536 | None:intergenic | 30.0% | |
| TAATGAATCTTGGATAGACT+CGG | - | chr6.3:14917774-14917793 | None:intergenic | 30.0% | |
| TACAAAACTCAACAGTTCTA+CGG | - | chr6.3:14921248-14921267 | None:intergenic | 30.0% | |
| TACCATAAAAACTCACAGAA+AGG | - | chr6.3:14919868-14919887 | None:intergenic | 30.0% | |
| TACTATTCTGTTGATACTCT+TGG | + | chr6.3:14918161-14918180 | MS.gene80895:intron | 30.0% | |
| TATCCACATTTAGTTGTCAT+GGG | + | chr6.3:14921172-14921191 | MS.gene80895:CDS | 30.0% | |
| TCACTATCTAGAGATCATAT+TGG | + | chr6.3:14918971-14918990 | MS.gene80895:intron | 30.0% | |
| TCAGTAAAAGTCATACTGTA+AGG | - | chr6.3:14921796-14921815 | None:intergenic | 30.0% | |
| TGGAATTCTTTCCTATAATC+TGG | + | chr6.3:14920959-14920978 | MS.gene80895:intron | 30.0% | |
| TGTAAATGGTGAGATCTTAT+TGG | + | chr6.3:14920001-14920020 | MS.gene80895:intron | 30.0% | |
| TTATCCACATTTAGTTGTCA+TGG | + | chr6.3:14921171-14921190 | MS.gene80895:CDS | 30.0% | |
| TTGTGTAAACCAGATCATAT+TGG | - | chr6.3:14920421-14920440 | None:intergenic | 30.0% | |
| ! | AAGTTTTCGATACATGTTTG+TGG | + | chr6.3:14918666-14918685 | MS.gene80895:intron | 30.0% |
| ! | ACAGTGAAATCAGCAATTTT+TGG | + | chr6.3:14918573-14918592 | MS.gene80895:intron | 30.0% |
| ! | ACTAGTCTCTCATTAACTAA+AGG | - | chr6.3:14922394-14922413 | None:intergenic | 30.0% |
| ! | GTTTTCTATGCTACTATATG+TGG | + | chr6.3:14922891-14922910 | MS.gene80895:intron | 30.0% |
| ! | GTTTTGTAAGATAGCTTCTA+GGG | + | chr6.3:14921260-14921279 | MS.gene80895:intron | 30.0% |
| ! | TAATCTGGTTACTTTGTTGA+TGG | + | chr6.3:14920974-14920993 | MS.gene80895:intron | 30.0% |
| ! | TAGTACATATTTTGCCACAT+AGG | - | chr6.3:14917525-14917544 | None:intergenic | 30.0% |
| ! | TGTTTTCGACTTTATGGATT+AGG | - | chr6.3:14918498-14918517 | None:intergenic | 30.0% |
| ! | TTAAATTTTCGCAAGTTGTG+TGG | - | chr6.3:14922494-14922513 | None:intergenic | 30.0% |
| !! | AATTGGTTGCCTTTTATTTC+TGG | + | chr6.3:14920186-14920205 | MS.gene80895:CDS | 30.0% |
| !! | AGAAATATTAGTTCTATCGC+CGG | + | chr6.3:14920379-14920398 | MS.gene80895:intron | 30.0% |
| !! | AGAAATGACAAAAGTACTCA+CGG | - | chr6.3:14917593-14917612 | None:intergenic | 30.0% |
| !! | AGTTTTGTAAGATAGCTTCT+AGG | + | chr6.3:14921259-14921278 | MS.gene80895:intron | 30.0% |
| !! | ATGGTAAGACTTTTTCCTAT+TGG | + | chr6.3:14920939-14920958 | MS.gene80895:intron | 30.0% |
| !! | ATTCCAGTTTTTAAGCCTTT+TGG | - | chr6.3:14921871-14921890 | None:intergenic | 30.0% |
| !! | TTGTGTTTGATGATAGCTTT+TGG | + | chr6.3:14920589-14920608 | MS.gene80895:CDS | 30.0% |
| !!! | AACTTTGTTTTTGGAACAGT+TGG | + | chr6.3:14922956-14922975 | MS.gene80895:intron | 30.0% |
| !!! | AGTCTTTGCCTTTTTTGAAT+TGG | + | chr6.3:14920169-14920188 | MS.gene80895:CDS | 30.0% |
| !!! | CTATTTTTTTATTCTCGCCA+AGG | + | chr6.3:14919067-14919086 | MS.gene80895:intron | 30.0% |
| !!! | CTTTTGTTTTTATACCAGGT+TGG | + | chr6.3:14918775-14918794 | MS.gene80895:intron | 30.0% |
| !!! | GCTACTTTTGTTTTTATACC+AGG | + | chr6.3:14918771-14918790 | MS.gene80895:CDS | 30.0% |
| !!! | GTATGTCTCTTTTAGCTTTT+TGG | + | chr6.3:14919407-14919426 | MS.gene80895:intron | 30.0% |
| !!! | GTGGTTTTTTCTCTTTTGTT+TGG | + | chr6.3:14923204-14923223 | MS.gene80895:intron | 30.0% |
| !!! | TTGTTCACTTTTTTCCTCTA+TGG | + | chr6.3:14917564-14917583 | MS.gene80895:CDS | 30.0% |
| AAAAAACCTTTGACACGTCT+TGG | + | chr6.3:14923062-14923081 | MS.gene80895:intron | 35.0% | |
| AAGCAAAGGTTTACCATGTT+TGG | - | chr6.3:14918302-14918321 | None:intergenic | 35.0% | |
| AATGCAGAAACTTTATGCCA+AGG | - | chr6.3:14920700-14920719 | None:intergenic | 35.0% | |
| ACAATATAGCACTGTATGTC+GGG | - | chr6.3:14920573-14920592 | None:intergenic | 35.0% | |
| ACGAATTCTTCAAGTCCATT+AGG | + | chr6.3:14919247-14919266 | MS.gene80895:CDS | 35.0% | |
| AGACATTTGATGCTGTTGAT+GGG | + | chr6.3:14919209-14919228 | MS.gene80895:intron | 35.0% | |
| ATTTAGTTGTCATGGGAACT+GGG | + | chr6.3:14921179-14921198 | MS.gene80895:CDS | 35.0% | |
| CAAAGTTAGCCATATCCTTA+AGG | + | chr6.3:14918088-14918107 | MS.gene80895:intron | 35.0% | |
| CACAATATAGCACTGTATGT+CGG | - | chr6.3:14920574-14920593 | None:intergenic | 35.0% | |
| CACTTATGTGATGAACCAAA+AGG | + | chr6.3:14921853-14921872 | MS.gene80895:CDS | 35.0% | |
| CAGAATGAAAAATACGGTGA+AGG | - | chr6.3:14919298-14919317 | None:intergenic | 35.0% | |
| CATATCCTTAAGGTATAGAG+AGG | + | chr6.3:14918098-14918117 | MS.gene80895:intron | 35.0% | |
| CATTTACAGGTACATATACC+CGG | + | chr6.3:14922431-14922450 | MS.gene80895:intron | 35.0% | |
| CGAATTCTTCAAGTCCATTA+GGG | + | chr6.3:14919248-14919267 | MS.gene80895:CDS | 35.0% | |
| CGGATACCAACTTAGAATTT+GGG | - | chr6.3:14917754-14917773 | None:intergenic | 35.0% | |
| CTATATACAGGACAAGAACA+TGG | - | chr6.3:14919598-14919617 | None:intergenic | 35.0% | |
| CTCTCTATACCTTAAGGATA+TGG | - | chr6.3:14918100-14918119 | None:intergenic | 35.0% | |
| CTGATACTTCCTGTTGTAAA+TGG | + | chr6.3:14919780-14919799 | MS.gene80895:CDS | 35.0% | |
| CTTAAAAACTGGAATGTGCA+TGG | + | chr6.3:14921876-14921895 | MS.gene80895:CDS | 35.0% | |
| GAACCAAAAGGCTTAAAAAC+TGG | + | chr6.3:14921865-14921884 | MS.gene80895:CDS | 35.0% | |
| GAATTCTTCAAGTCCATTAG+GGG | + | chr6.3:14919249-14919268 | MS.gene80895:CDS | 35.0% | |
| GAGTCTATCCAAGATTCATT+AGG | + | chr6.3:14917773-14917792 | MS.gene80895:intron | 35.0% | |
| GTTTAATATGCATGCACTGA+TGG | - | chr6.3:14920052-14920071 | None:intergenic | 35.0% | |
| TAAATCCCATCAGAGTTATC+TGG | - | chr6.3:14918415-14918434 | None:intergenic | 35.0% | |
| TAATTGGCTATGATGTCAGA+TGG | - | chr6.3:14921154-14921173 | None:intergenic | 35.0% | |
| TACCAACTTAGAATTTGGGT+TGG | - | chr6.3:14917750-14917769 | None:intergenic | 35.0% | |
| TAGACATTTGATGCTGTTGA+TGG | + | chr6.3:14919208-14919227 | MS.gene80895:intron | 35.0% | |
| TATGCTTGTCCAATATGATC+TGG | + | chr6.3:14920409-14920428 | MS.gene80895:intron | 35.0% | |
| TCATAAACTATCACAGCCAA+TGG | + | chr6.3:14921461-14921480 | MS.gene80895:intron | 35.0% | |
| TCGGATACCAACTTAGAATT+TGG | - | chr6.3:14917755-14917774 | None:intergenic | 35.0% | |
| TGAGAGTCGCACAAAAAAAA+AGG | - | chr6.3:14918954-14918973 | None:intergenic | 35.0% | |
| TGCTCGACTATATCATTTGA+AGG | - | chr6.3:14920444-14920463 | None:intergenic | 35.0% | |
| TGGACAAGCATAATTAACAC+CGG | - | chr6.3:14920401-14920420 | None:intergenic | 35.0% | |
| TTCTAACAATTCGGCATGAT+CGG | + | chr6.3:14919663-14919682 | MS.gene80895:intron | 35.0% | |
| TTGCATCAAGGCTAAATGAT+GGG | + | chr6.3:14922264-14922283 | MS.gene80895:CDS | 35.0% | |
| TTGTTCCAGATAACTCTGAT+GGG | + | chr6.3:14918407-14918426 | MS.gene80895:intron | 35.0% | |
| TTTCATATATCCGCGTTACT+CGG | + | chr6.3:14918248-14918267 | MS.gene80895:intron | 35.0% | |
| TTTGCAGAAACAGAATCATC+AGG | - | chr6.3:14922735-14922754 | None:intergenic | 35.0% | |
| TTTGTTCCAGATAACTCTGA+TGG | + | chr6.3:14918406-14918425 | MS.gene80895:intron | 35.0% | |
| ! | AATGAGAGACTAGTTCTTCT+TGG | + | chr6.3:14922400-14922419 | MS.gene80895:CDS | 35.0% |
| ! | ACCAACTTAGAATTTGGGTT+GGG | - | chr6.3:14917749-14917768 | None:intergenic | 35.0% |
| ! | CTTTTCTATTGTTCCATTGC+AGG | + | chr6.3:14923406-14923425 | MS.gene80895:intron | 35.0% |
| ! | GATAGAAGCTCAATTTTGCA+GGG | + | chr6.3:14921814-14921833 | MS.gene80895:intron | 35.0% |
| ! | GATATTTTGCAGTCCAAACA+TGG | + | chr6.3:14918286-14918305 | MS.gene80895:intron | 35.0% |
| ! | TACATTTTATGGCGCAACAT+GGG | + | chr6.3:14919560-14919579 | MS.gene80895:CDS | 35.0% |
| ! | TGATAGAAGCTCAATTTTGC+AGG | + | chr6.3:14921813-14921832 | MS.gene80895:intron | 35.0% |
| ! | TTACATTTTATGGCGCAACA+TGG | + | chr6.3:14919559-14919578 | MS.gene80895:CDS | 35.0% |
| ! | TTGATAACTTGTGCTTGCTA+TGG | + | chr6.3:14923332-14923351 | MS.gene80895:intron | 35.0% |
| !! | AAAGTGTGTTTTTCAGTCCT+TGG | - | chr6.3:14919087-14919106 | None:intergenic | 35.0% |
| !! | AACAGGAAGTATCAGTGTAT+TGG | - | chr6.3:14919775-14919794 | None:intergenic | 35.0% |
| !! | ACAAAACTGACTTGTGAAGT+GGG | - | chr6.3:14917712-14917731 | None:intergenic | 35.0% |
| !! | AGTTTGAAGCACTTGCTTTT+GGG | + | chr6.3:14919484-14919503 | MS.gene80895:intron | 35.0% |
| !! | ATGGGTTATATTGGTTCTCA+TGG | + | chr6.3:14917455-14917474 | MS.gene80895:CDS | 35.0% |
| !! | CAGTTTTGTAGAGTTGAGTT+AGG | + | chr6.3:14917723-14917742 | MS.gene80895:intron | 35.0% |
| !! | TACAAAACTGACTTGTGAAG+TGG | - | chr6.3:14917713-14917732 | None:intergenic | 35.0% |
| !! | TTAGGATGATTAATGGACTC+AGG | - | chr6.3:14918480-14918499 | None:intergenic | 35.0% |
| !!! | AGCTTATTTTAGGCCTTGTT+TGG | + | chr6.3:14921315-14921334 | MS.gene80895:intron | 35.0% |
| !!! | ATCCATCGACTTAGTTTTGT+AGG | + | chr6.3:14917913-14917932 | MS.gene80895:intron | 35.0% |
| !!! | ATTTTTCTACAGGTGCTGAA+TGG | + | chr6.3:14920127-14920146 | MS.gene80895:intron | 35.0% |
| !!! | GACGTGTCAAAGGTTTTTTT+AGG | - | chr6.3:14923061-14923080 | None:intergenic | 35.0% |
| !!! | TAGTTTTGTAGGGTTGATTC+AGG | + | chr6.3:14917924-14917943 | MS.gene80895:intron | 35.0% |
| !!! | TCCATCGACTTAGTTTTGTA+GGG | + | chr6.3:14917914-14917933 | MS.gene80895:intron | 35.0% |
| AAGGTTGTGAAGTCGAGAAA+TGG | + | chr6.3:14920894-14920913 | MS.gene80895:CDS | 40.0% | |
| AATATGTACTACAGCCCTTC+TGG | + | chr6.3:14917534-14917553 | MS.gene80895:CDS | 40.0% | |
| ACCCTACAAAACTAAGTCGA+TGG | - | chr6.3:14917918-14917937 | None:intergenic | 40.0% | |
| ACCTGAAGCAATATATTCCC+AGG | - | chr6.3:14922815-14922834 | None:intergenic | 40.0% | |
| ACTCTCCTAACACCCAAAAT+TGG | - | chr6.3:14917844-14917863 | None:intergenic | 40.0% | |
| ATTATCATAAGACCCTCCGT+AGG | - | chr6.3:14919807-14919826 | None:intergenic | 40.0% | |
| CAAACCCTCTCTATACCTTA+AGG | - | chr6.3:14918106-14918125 | None:intergenic | 40.0% | |
| CACACTTAGGACCTATAATG+CGG | - | chr6.3:14923187-14923206 | None:intergenic | 40.0% | |
| CATGAAATTACGAATGCCCT+GGG | + | chr6.3:14922795-14922814 | MS.gene80895:CDS | 40.0% | |
| CATTTAGTTGTCATGGGAAC+TGG | + | chr6.3:14921178-14921197 | MS.gene80895:CDS | 40.0% | |
| CCAATTGAGGTGAGTATATC+TGG | - | chr6.3:14918714-14918733 | None:intergenic | 40.0% | |
| CCAGATATACTCACCTCAAT+TGG | + | chr6.3:14918711-14918730 | MS.gene80895:intron | 40.0% | |
| CCTGAAGCAATATATTCCCA+GGG | - | chr6.3:14922814-14922833 | None:intergenic | 40.0% | |
| CTACTATTGTCTGCATTGCT+TGG | + | chr6.3:14918440-14918459 | MS.gene80895:CDS | 40.0% | |
| CTATACATACTTGAGTGCGA+CGG | - | chr6.3:14920626-14920645 | None:intergenic | 40.0% | |
| CTTAAGGTATAGAGAGGGTT+TGG | + | chr6.3:14918104-14918123 | MS.gene80895:intron | 40.0% | |
| CTTGCATCAAGGCTAAATGA+TGG | + | chr6.3:14922263-14922282 | MS.gene80895:CDS | 40.0% | |
| CTTGGTTACTGTGCATTTAC+AGG | + | chr6.3:14922418-14922437 | MS.gene80895:CDS | 40.0% | |
| CTTTATGCCAAGGACTAATG+TGG | - | chr6.3:14920690-14920709 | None:intergenic | 40.0% | |
| GCTTACTTTCGGATATCTTG+TGG | + | chr6.3:14921201-14921220 | MS.gene80895:CDS | 40.0% | |
| GTTCCCATGACAACTAAATG+TGG | - | chr6.3:14921178-14921197 | None:intergenic | 40.0% | |
| GTTTGGCGGGAATTAAAAAG+AGG | + | chr6.3:14918121-14918140 | MS.gene80895:intron | 40.0% | |
| TAAGAAACTACCAAGGGAAG+TGG | - | chr6.3:14921716-14921735 | None:intergenic | 40.0% | |
| TCATGAAATTACGAATGCCC+TGG | + | chr6.3:14922794-14922813 | MS.gene80895:CDS | 40.0% | |
| TCCTGTTGTAAATGGACCTA+CGG | + | chr6.3:14919788-14919807 | MS.gene80895:CDS | 40.0% | |
| TGATGCAAGTGCATTAGCAA+TGG | - | chr6.3:14922252-14922271 | None:intergenic | 40.0% | |
| TGGTGTAGATCATTCCTATG+TGG | + | chr6.3:14917508-14917527 | MS.gene80895:CDS | 40.0% | |
| TGTGCAAAATGAACCCATCT+TGG | - | chr6.3:14918748-14918767 | None:intergenic | 40.0% | |
| TGTGTGGAGTAAATTGTTCG+AGG | - | chr6.3:14922478-14922497 | None:intergenic | 40.0% | |
| TGTTAGGAGAGTTCCACATT+GGG | + | chr6.3:14917852-14917871 | MS.gene80895:intron | 40.0% | |
| TGTTCCATTGCAGGATAACT+AGG | + | chr6.3:14923415-14923434 | MS.gene80895:intron | 40.0% | |
| TTAGTGCACTCATCTTGACT+CGG | - | chr6.3:14919009-14919028 | None:intergenic | 40.0% | |
| TTGCTAATGCACTTGCATCA+AGG | + | chr6.3:14922252-14922271 | MS.gene80895:CDS | 40.0% | |
| TTTGCTTGCCACTATGATTG+TGG | + | chr6.3:14921684-14921703 | MS.gene80895:intron | 40.0% | |
| ! | GCCCTTTCTGTGAGTTTTTA+TGG | + | chr6.3:14919863-14919882 | MS.gene80895:intron | 40.0% |
| ! | TAACAAAGCCTTTTCGTGCT+AGG | - | chr6.3:14922001-14922020 | None:intergenic | 40.0% |
| !! | AGATGGGTTCATTTTGCACA+CGG | + | chr6.3:14918748-14918767 | MS.gene80895:CDS | 40.0% |
| !! | CAGTTTGAAGCACTTGCTTT+TGG | + | chr6.3:14919483-14919502 | MS.gene80895:intron | 40.0% |
| !! | CTCTTGATGGTAACCGATTT+TGG | + | chr6.3:14918824-14918843 | MS.gene80895:intron | 40.0% |
| !! | GAAAGTACTTCTTCCACACA+TGG | - | chr6.3:14919517-14919536 | None:intergenic | 40.0% |
| !! | TAAGATAGCTTCTAGGGTTG+AGG | + | chr6.3:14921266-14921285 | MS.gene80895:intron | 40.0% |
| !! | TATCCGTTTGTTGTCCTTGT+CGG | + | chr6.3:14921018-14921037 | MS.gene80895:CDS | 40.0% |
| !! | TGTGTGGAAGAAGTACTTTC+TGG | + | chr6.3:14919517-14919536 | MS.gene80895:CDS | 40.0% |
| !!! | AGACGCGTCATTTTTGTTTC+TGG | + | chr6.3:14921071-14921090 | MS.gene80895:intron | 40.0% |
| AAGCATCCAAGACGTGTCAA+AGG | - | chr6.3:14923071-14923090 | None:intergenic | 45.0% | |
| AAGGTATAGAGAGGGTTTGG+CGG | + | chr6.3:14918107-14918126 | MS.gene80895:intron | 45.0% | |
| AGGTCATATCTCACCCAATG+TGG | - | chr6.3:14917868-14917887 | None:intergenic | 45.0% | |
| AGTGCATTAGCAATGGCAAG+TGG | - | chr6.3:14922245-14922264 | None:intergenic | 45.0% | |
| ATCGGTTACCATCAAGAGAC+TGG | - | chr6.3:14918822-14918841 | None:intergenic | 45.0% | |
| ATGCGGCGACATACATGATA+TGG | - | chr6.3:14923170-14923189 | None:intergenic | 45.0% | |
| ATGGGAACTGGGCTTACTTT+CGG | + | chr6.3:14921190-14921209 | MS.gene80895:CDS | 45.0% | |
| CACAGTACCACATTAGTCCT+TGG | + | chr6.3:14920680-14920699 | MS.gene80895:intron | 45.0% | |
| CAGAAACAGAATCATCAGGC+AGG | - | chr6.3:14922731-14922750 | None:intergenic | 45.0% | |
| CAGCAGTGAAAAAGTGACAG+AGG | - | chr6.3:14919833-14919852 | None:intergenic | 45.0% | |
| CATGTATGTCGCCGCATTAT+AGG | + | chr6.3:14923173-14923192 | MS.gene80895:intron | 45.0% | |
| CCATTGCAGGATAACTAGGA+AGG | + | chr6.3:14923419-14923438 | MS.gene80895:intron | 45.0% | |
| CCCTGGGAATATATTGCTTC+AGG | + | chr6.3:14922811-14922830 | MS.gene80895:CDS | 45.0% | |
| CCTTCCTAGTTATCCTGCAA+TGG | - | chr6.3:14923422-14923441 | None:intergenic | 45.0% | |
| CGCATTATAGGTCCTAAGTG+TGG | + | chr6.3:14923185-14923204 | MS.gene80895:intron | 45.0% | |
| CGTTCATGACGTGTTCATGA+CGG | + | chr6.3:14922082-14922101 | MS.gene80895:intron | 45.0% | |
| CTTACCATTGCTAACGCAAG+AGG | - | chr6.3:14920927-14920946 | None:intergenic | 45.0% | |
| CTTGCCACTATGATTGTGGT+AGG | + | chr6.3:14921688-14921707 | MS.gene80895:intron | 45.0% | |
| CTTGTCCTAAGCTATGTGTC+CGG | + | chr6.3:14922985-14923004 | MS.gene80895:intron | 45.0% | |
| GCAAAATGAACCCATCTTGG+AGG | - | chr6.3:14918745-14918764 | None:intergenic | 45.0% | |
| GCCCAACCCAAATTCTAAGT+TGG | + | chr6.3:14917745-14917764 | MS.gene80895:intron | 45.0% | |
| GGAACCTACCACAATCATAG+TGG | - | chr6.3:14921695-14921714 | None:intergenic | 45.0% | |
| GGCAAGTGGTAGATACATGA+GGG | - | chr6.3:14922231-14922250 | None:intergenic | 45.0% | |
| GTCTAAGGGTCTGTTTGCAT+TGG | - | chr6.3:14921564-14921583 | None:intergenic | 45.0% | |
| GTGTTAGGAGAGTTCCACAT+TGG | + | chr6.3:14917851-14917870 | MS.gene80895:intron | 45.0% | |
| GTTGTAAATGGACCTACGGA+GGG | + | chr6.3:14919792-14919811 | MS.gene80895:CDS | 45.0% | |
| TATGCCTCTTGCGTTAGCAA+TGG | + | chr6.3:14920920-14920939 | MS.gene80895:CDS | 45.0% | |
| TCCGTAGGTCCATTTACAAC+AGG | - | chr6.3:14919792-14919811 | None:intergenic | 45.0% | |
| TGAACAAAGCGAGTCCAGAA+GGG | - | chr6.3:14917551-14917570 | None:intergenic | 45.0% | |
| TGGCAAGTGGTAGATACATG+AGG | - | chr6.3:14922232-14922251 | None:intergenic | 45.0% | |
| TGTCCGACAGACAAACAACT+CGG | + | chr6.3:14923027-14923046 | MS.gene80895:intron | 45.0% | |
| TGTCCGAGTTGTTTGTCTGT+CGG | - | chr6.3:14923033-14923052 | None:intergenic | 45.0% | |
| TGTTGTAAATGGACCTACGG+AGG | + | chr6.3:14919791-14919810 | MS.gene80895:CDS | 45.0% | |
| TTGTCCTAAGCTATGTGTCC+GGG | + | chr6.3:14922986-14923005 | MS.gene80895:intron | 45.0% | |
| TTGTGGTACCAGTCTCTTGA+TGG | + | chr6.3:14918811-14918830 | MS.gene80895:intron | 45.0% | |
| ! | ACACTCGAGACGTCCAATTT+TGG | + | chr6.3:14917828-14917847 | MS.gene80895:intron | 45.0% |
| ! | ATGTCGGGACATCTGAAATC+CGG | - | chr6.3:14920558-14920577 | None:intergenic | 45.0% |
| ! | CACTCGAGACGTCCAATTTT+GGG | + | chr6.3:14917829-14917848 | MS.gene80895:intron | 45.0% |
| ! | CTGACTTGTGAAGTGGGAAA+TGG | - | chr6.3:14917706-14917725 | None:intergenic | 45.0% |
| ! | GAAGCTCAATTTTGCAGGGA+AGG | + | chr6.3:14921818-14921837 | MS.gene80895:intron | 45.0% |
| !! | ATAGCTTCTAGGGTTGAGGT+AGG | + | chr6.3:14921270-14921289 | MS.gene80895:intron | 45.0% |
| !! | GAAGAAGTACTTTCTGGTGG+TGG | + | chr6.3:14919523-14919542 | MS.gene80895:CDS | 45.0% |
| !! | GACGTCCAATTTTGGGTGTT+AGG | + | chr6.3:14917836-14917855 | MS.gene80895:intron | 45.0% |
| !! | GATGGGTTCATTTTGCACAC+GGG | + | chr6.3:14918749-14918768 | MS.gene80895:CDS | 45.0% |
| !! | GTGGAAGAAGTACTTTCTGG+TGG | + | chr6.3:14919520-14919539 | MS.gene80895:CDS | 45.0% |
| !! | TTCTACAGGTGCTGAATGGT+GGG | + | chr6.3:14920131-14920150 | MS.gene80895:intron | 45.0% |
| !! | TTTCTACAGGTGCTGAATGG+TGG | + | chr6.3:14920130-14920149 | MS.gene80895:intron | 45.0% |
| !!! | CACTTTTTCACTGCTGTCGT+TGG | + | chr6.3:14919837-14919856 | MS.gene80895:CDS | 45.0% |
| !! | AAATTAAAAATAAAAGTAAA+AGG | - | chr6.3:14918203-14918222 | None:intergenic | 5.0% |
| !! | ATACAAAAAATAAAAATATT+AGG | - | chr6.3:14920318-14920337 | None:intergenic | 5.0% |
| !! | TACAAAAAATAAAAATATTA+GGG | - | chr6.3:14920317-14920336 | None:intergenic | 5.0% |
| !!! | ATATTTTTATTTTTTGTATA+TGG | + | chr6.3:14920319-14920338 | MS.gene80895:intron | 5.0% |
| ACATAAGCACTCCTCCGACA+AGG | - | chr6.3:14921035-14921054 | None:intergenic | 50.0% | |
| ACATACTTGAGTGCGACGGT+TGG | - | chr6.3:14920622-14920641 | None:intergenic | 50.0% | |
| AGCCAAAATGCCGAGTAACG+CGG | - | chr6.3:14918261-14918280 | None:intergenic | 50.0% | |
| AGGGTGGGCCTAATGAATCT+TGG | - | chr6.3:14917784-14917803 | None:intergenic | 50.0% | |
| AGGTATAGAGAGGGTTTGGC+GGG | + | chr6.3:14918108-14918127 | MS.gene80895:intron | 50.0% | |
| AGTACTCACGGCATCCATAG+AGG | - | chr6.3:14917581-14917600 | None:intergenic | 50.0% | |
| CCTCCGACAAGGACAACAAA+CGG | - | chr6.3:14921024-14921043 | None:intergenic | 50.0% | |
| CTGACACATGTTTGCCAACC+CGG | - | chr6.3:14923007-14923026 | None:intergenic | 50.0% | |
| GTGAACAAAGCGAGTCCAGA+AGG | - | chr6.3:14917552-14917571 | None:intergenic | 50.0% | |
| TGATCGAACAGCTCCCCTAA+TGG | - | chr6.3:14919265-14919284 | None:intergenic | 50.0% | |
| TTAGGGGAGCTGTTCGATCA+TGG | + | chr6.3:14919265-14919284 | MS.gene80895:CDS | 50.0% | |
| ! | ATCCGCGTTACTCGGCATTT+TGG | + | chr6.3:14918256-14918275 | MS.gene80895:intron | 50.0% |
| ! | CAAAGCCTTTTCGTGCTAGG+TGG | - | chr6.3:14921998-14922017 | None:intergenic | 50.0% |
| ! | CTTTTCGTGCTAGGTGGAGT+CGG | - | chr6.3:14921992-14922011 | None:intergenic | 50.0% |
| ! | TCTAGGGTTGAGGTAGGCTT+AGG | + | chr6.3:14921276-14921295 | MS.gene80895:intron | 50.0% |
| ! | TTTGGGAGCACATCCATGTG+TGG | + | chr6.3:14919501-14919520 | MS.gene80895:CDS | 50.0% |
| !! | AGGTAGGCTTAGGCCTTGTT+TGG | + | chr6.3:14921286-14921305 | MS.gene80895:intron | 50.0% |
| !! | GAATGGTGGGCTCAGCAATT+TGG | + | chr6.3:14920144-14920163 | MS.gene80895:CDS | 50.0% |
| !! | TTGTCGGAGGAGTGCTTATG+TGG | + | chr6.3:14921034-14921053 | MS.gene80895:CDS | 50.0% |
| CCAACCCGGACACATAGCTT+AGG | - | chr6.3:14922993-14923012 | None:intergenic | 55.0% | |
| CCTAAGCTATGTGTCCGGGT+TGG | + | chr6.3:14922990-14923009 | MS.gene80895:intron | 55.0% | |
| CGACTCCACCTAGCACGAAA+AGG | + | chr6.3:14921990-14922009 | MS.gene80895:intron | 55.0% | |
| GCTAGGTGGAGTCGGTTACA+TGG | - | chr6.3:14921984-14922003 | None:intergenic | 55.0% | |
| GGACACAGCTCCTCCAAGAT+GGG | + | chr6.3:14918732-14918751 | MS.gene80895:CDS | 55.0% | |
| GGAGGAGCTGTGTCCAATTG+AGG | - | chr6.3:14918727-14918746 | None:intergenic | 55.0% | |
| GTGGTAGGTTCCACTTCCCT+TGG | + | chr6.3:14921703-14921722 | MS.gene80895:intron | 55.0% | |
| TGGACACAGCTCCTCCAAGA+TGG | + | chr6.3:14918731-14918750 | MS.gene80895:CDS | 55.0% | |
| !! | CCGTTTGTTGTCCTTGTCGG+AGG | + | chr6.3:14921021-14921040 | MS.gene80895:CDS | 55.0% |
| CGTCTCGAGTGTGACTCGAG+TGG | - | chr6.3:14917820-14917839 | None:intergenic | 60.0% | |
| GAGTGGCGCGATGCGATAGA+GGG | - | chr6.3:14917803-14917822 | None:intergenic | 60.0% | |
| CGAGTGGCGCGATGCGATAG+AGG | - | chr6.3:14917804-14917823 | None:intergenic | 65.0% | |
| GGCGCGATGCGATAGAGGGT+GGG | - | chr6.3:14917799-14917818 | None:intergenic | 65.0% | |
| TGGCGCGATGCGATAGAGGG+TGG | - | chr6.3:14917800-14917819 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 14917455 | 14923449 | 14917455 | ID=MS.gene80895 |
| chr6.3 | mRNA | 14917455 | 14923449 | 14917455 | ID=MS.gene80895.t1;Parent=MS.gene80895 |
| chr6.3 | exon | 14917455 | 14917591 | 14917455 | ID=MS.gene80895.t1.exon1;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14917455 | 14917591 | 14917455 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14918298 | 14918307 | 14918298 | ID=MS.gene80895.t1.exon2;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14918298 | 14918307 | 14918298 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14918416 | 14918466 | 14918416 | ID=MS.gene80895.t1.exon3;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14918416 | 14918466 | 14918416 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14918715 | 14918792 | 14918715 | ID=MS.gene80895.t1.exon4;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14918715 | 14918792 | 14918715 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14919211 | 14919286 | 14919211 | ID=MS.gene80895.t1.exon5;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14919211 | 14919286 | 14919211 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14919384 | 14919406 | 14919384 | ID=MS.gene80895.t1.exon6;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14919384 | 14919406 | 14919384 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14919486 | 14919586 | 14919486 | ID=MS.gene80895.t1.exon7;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14919486 | 14919586 | 14919486 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14919764 | 14919858 | 14919764 | ID=MS.gene80895.t1.exon8;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14919764 | 14919858 | 14919764 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14920139 | 14920207 | 14920139 | ID=MS.gene80895.t1.exon9;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14920139 | 14920207 | 14920139 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14920566 | 14920635 | 14920566 | ID=MS.gene80895.t1.exon10;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14920566 | 14920635 | 14920566 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14920878 | 14920941 | 14920878 | ID=MS.gene80895.t1.exon11;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14920878 | 14920941 | 14920878 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14921015 | 14921055 | 14921015 | ID=MS.gene80895.t1.exon12;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14921015 | 14921055 | 14921015 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14921138 | 14921222 | 14921138 | ID=MS.gene80895.t1.exon13;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14921138 | 14921222 | 14921138 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14921835 | 14921897 | 14921835 | ID=MS.gene80895.t1.exon14;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14921835 | 14921897 | 14921835 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14922227 | 14922285 | 14922227 | ID=MS.gene80895.t1.exon15;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14922227 | 14922285 | 14922227 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14922387 | 14922439 | 14922387 | ID=MS.gene80895.t1.exon16;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14922387 | 14922439 | 14922387 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14922760 | 14922832 | 14922760 | ID=MS.gene80895.t1.exon17;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14922760 | 14922832 | 14922760 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| chr6.3 | exon | 14923428 | 14923449 | 14923428 | ID=MS.gene80895.t1.exon18;Parent=MS.gene80895.t1 |
| chr6.3 | CDS | 14923428 | 14923449 | 14923428 | ID=cds.MS.gene80895.t1;Parent=MS.gene80895.t1 |
| Gene Sequence |
| Protein sequence |
