Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84382.t1 | XP_003598262.2 | 91.7 | 204 | 17 | 0 | 1 | 204 | 1 | 204 | 1.60E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84382.t1 | Q3M725 | 24.3 | 115 | 80 | 2 | 89 | 203 | 12 | 119 | 7.5e-08 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84382.t1 | G7IYL6 | 91.7 | 204 | 17 | 0 | 1 | 204 | 1 | 204 | 1.1e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene84382 | 0.850193 | 1.99E-60 | -1.69E-46 |
| MS.gene049758 | MS.gene84382 | 0.839098 | 1.94E-57 | -1.69E-46 |
| MS.gene04984 | MS.gene84382 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene049915 | MS.gene84382 | 0.815171 | 1.06E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene84382 | 0.824814 | 6.58E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene84382 | 0.825847 | 3.75E-54 | -1.69E-46 |
| MS.gene050228 | MS.gene84382 | 0.822201 | 2.69E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene84382 | -0.827419 | 1.58E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene84382 | 0.831869 | 1.31E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene84382 | 0.821947 | 3.08E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene84382 | 0.821766 | 3.39E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene84382 | 0.813081 | 3.07E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene84382 | 0.821433 | 4.05E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene84382 | 0.82245 | 2.35E-53 | -1.69E-46 |
| MS.gene050824 | MS.gene84382 | 0.822222 | 2.66E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene84382 | 0.802367 | 5.80E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene84382 | 0.814888 | 1.22E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene84382 | 0.816761 | 4.68E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene84382 | 0.812133 | 4.94E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene84382 | 0.822627 | 2.14E-53 | -1.69E-46 |
| MS.gene052376 | MS.gene84382 | 0.836006 | 1.21E-56 | -1.69E-46 |
| MS.gene052856 | MS.gene84382 | 0.827204 | 1.78E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene84382 | 0.831064 | 2.06E-55 | -1.69E-46 |
| MS.gene054184 | MS.gene84382 | 0.80504 | 1.62E-49 | -1.69E-46 |
| MS.gene054185 | MS.gene84382 | 0.815479 | 9.05E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene84382 | 0.832601 | 8.61E-56 | -1.69E-46 |
| MS.gene054930 | MS.gene84382 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene054942 | MS.gene84382 | 0.81348 | 2.51E-51 | -1.69E-46 |
| MS.gene055441 | MS.gene84382 | 0.805128 | 1.55E-49 | -1.69E-46 |
| MS.gene056400 | MS.gene84382 | 0.840607 | 7.85E-58 | -1.69E-46 |
| MS.gene056875 | MS.gene84382 | 0.803739 | 3.02E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene84382 | 0.800914 | 1.15E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene84382 | 0.820691 | 6.00E-53 | -1.69E-46 |
| MS.gene058182 | MS.gene84382 | 0.817363 | 3.43E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene84382 | 0.806092 | 9.73E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene84382 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene058749 | MS.gene84382 | 0.80746 | 5.00E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene84382 | 0.807525 | 4.84E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene84382 | 0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene060940 | MS.gene84382 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene84382 | 0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene061049 | MS.gene84382 | 0.804891 | 1.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84382.t1 | MTR_3g009150 | 91.667 | 204 | 17 | 0 | 1 | 204 | 1 | 204 | 1.41e-137 | 383 |
| MS.gene84382.t1 | MTR_3g009150 | 76.974 | 152 | 28 | 1 | 1 | 152 | 1 | 145 | 5.50e-82 | 241 |
| MS.gene84382.t1 | MTR_4g068280 | 34.184 | 196 | 111 | 6 | 22 | 201 | 18 | 211 | 5.33e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84382.t1 | AT2G30695 | 57.639 | 144 | 60 | 1 | 61 | 204 | 55 | 197 | 1.72e-53 | 170 |
| MS.gene84382.t1 | AT2G30695 | 57.639 | 144 | 60 | 1 | 61 | 204 | 55 | 197 | 1.72e-53 | 170 |
| MS.gene84382.t1 | AT2G30695 | 57.639 | 144 | 60 | 1 | 61 | 204 | 55 | 197 | 1.72e-53 | 170 |
| MS.gene84382.t1 | AT2G30695 | 52.239 | 67 | 31 | 1 | 61 | 127 | 55 | 120 | 3.88e-15 | 69.7 |
Find 21 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGATGTGTTTCAGAAAA+TGG | 0.225059 | 3.1:+4597933 | MS.gene84382:CDS |
| CCTACTGCTGCTGTGTTATC+AGG | 0.268960 | 3.1:+4596771 | MS.gene84382:CDS |
| ACCTCTAATAAAATGTCTTT+TGG | 0.275489 | 3.1:-4598772 | None:intergenic |
| CCAGGATTTCGTAGAGTAAA+AGG | 0.298327 | 3.1:+4597976 | MS.gene84382:CDS |
| CAGATAAGCATCGAGGTATC+TGG | 0.342280 | 3.1:+4597889 | MS.gene84382:intron |
| TCTGTCTTTCTTTGAAGCAT+AGG | 0.468922 | 3.1:+4595934 | MS.gene84382:CDS |
| AGATCTTGAAACTACATTTG+AGG | 0.477759 | 3.1:+4599753 | MS.gene84382:CDS |
| CTCAACTGTGGCTGAGTATG+TGG | 0.495219 | 3.1:+4598843 | MS.gene84382:CDS |
| CATCTTAAATCTAACTCCAC+AGG | 0.526554 | 3.1:+4595753 | MS.gene84382:CDS |
| TGATGATGTTAGAGAACTAA+AGG | 0.538789 | 3.1:+4596956 | MS.gene84382:CDS |
| ACTCTACGAAATCCTGGGAT+CGG | 0.550289 | 3.1:-4597970 | None:intergenic |
| CTTGAAACTACATTTGAGGA+AGG | 0.550589 | 3.1:+4599757 | MS.gene84382:CDS |
| CTTTCTTTGAAGCATAGGCA+TGG | 0.551400 | 3.1:+4595939 | MS.gene84382:CDS |
| AAAGCTGCACAACCGATCCC+AGG | 0.580477 | 3.1:+4597958 | MS.gene84382:CDS |
| CCTGATAACACAGCAGCAGT+AGG | 0.628547 | 3.1:-4596771 | None:intergenic |
| TGTGGCTGAGTATGTGGAGA+AGG | 0.628591 | 3.1:+4598849 | MS.gene84382:CDS |
| GGAAATAATCAACTCAACTG+TGG | 0.634122 | 3.1:+4598831 | MS.gene84382:CDS |
| GCTTGCAGATGATAAAACAC+AGG | 0.649255 | 3.1:+4595865 | MS.gene84382:intron |
| TTCTGTCCAGATAAGCATCG+AGG | 0.718719 | 3.1:+4597882 | MS.gene84382:intron |
| GGATTTCGTAGAGTAAAAGG+AGG | 0.718882 | 3.1:+4597979 | MS.gene84382:CDS |
| TATCTGGAAACAGAACACAG+AGG | 0.877907 | 3.1:+4597905 | MS.gene84382:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTATTTTTTTAATTAT+AGG | + | chr3.1:4599389-4599408 | MS.gene84382:intron | 0.0% |
| !! | AACTATAAAAACATAAAAAT+AGG | - | chr3.1:4598467-4598486 | None:intergenic | 10.0% |
| !!! | TATTATTATCATTTTCTATT+TGG | - | chr3.1:4598213-4598232 | None:intergenic | 10.0% |
| !! | ATAGCTCATAAAATTATAAA+CGG | + | chr3.1:4597104-4597123 | MS.gene84382:intron | 15.0% |
| !! | GAAAATGAGTTTATAAAAAT+GGG | + | chr3.1:4597413-4597432 | MS.gene84382:intron | 15.0% |
| !! | TAATTTCAACTTAAATGAAA+AGG | + | chr3.1:4596488-4596507 | MS.gene84382:intron | 15.0% |
| !! | TATTTACATTATTCAACAAT+AGG | + | chr3.1:4597619-4597638 | MS.gene84382:intron | 15.0% |
| !! | TGAAAATGAGTTTATAAAAA+TGG | + | chr3.1:4597412-4597431 | MS.gene84382:intron | 15.0% |
| !!! | AGAAGATTAATTCATTTTTA+TGG | + | chr3.1:4598720-4598739 | MS.gene84382:intron | 15.0% |
| !!! | TTGTTTAATATTTCATTTTC+AGG | + | chr3.1:4596543-4596562 | MS.gene84382:intron | 15.0% |
| !!! | TTTCAAGTATTTTTTTTCAT+TGG | + | chr3.1:4599422-4599441 | MS.gene84382:intron | 15.0% |
| !!! | TTTTCATTTAAGTTGAAATT+AGG | - | chr3.1:4596489-4596508 | None:intergenic | 15.0% |
| !! | AAAGAAAGAAAACTTACATT+TGG | - | chr3.1:4598416-4598435 | None:intergenic | 20.0% |
| !! | AATAGATTAGAGAATAAGTT+CGG | - | chr3.1:4597776-4597795 | None:intergenic | 20.0% |
| !! | ATTGAAAATGAGTTTATAAG+TGG | + | chr3.1:4597199-4597218 | MS.gene84382:intron | 20.0% |
| !! | CACAAAATAATGAGTAAATT+TGG | - | chr3.1:4596592-4596611 | None:intergenic | 20.0% |
| !! | CTAAAAAAGTAAATAGTTTC+TGG | - | chr3.1:4598092-4598111 | None:intergenic | 20.0% |
| !! | GAAATACTATAATTAGCAAA+CGG | - | chr3.1:4598882-4598901 | None:intergenic | 20.0% |
| !! | GGAAGAAAAAAACAATAAAA+AGG | - | chr3.1:4595798-4595817 | None:intergenic | 20.0% |
| !! | TAAATTCTAAGTAGACTATA+TGG | + | chr3.1:4597488-4597507 | MS.gene84382:intron | 20.0% |
| !! | TAACATGTAAATTATGATCT+AGG | - | chr3.1:4596844-4596863 | None:intergenic | 20.0% |
| !! | TAGCTCATAAAATTATAAAC+GGG | + | chr3.1:4597105-4597124 | MS.gene84382:intron | 20.0% |
| !! | TTGAAAATGAGTTTATAAGT+GGG | + | chr3.1:4597200-4597219 | MS.gene84382:intron | 20.0% |
| !! | TTTGGATAAACAACTTAATT+AGG | + | chr3.1:4596106-4596125 | MS.gene84382:intron | 20.0% |
| !!! | ATGATTTTTCTTGAATTGTA+AGG | + | chr3.1:4598602-4598621 | MS.gene84382:intron | 20.0% |
| !!! | GAGAGGTTTTTAATTAAAAT+AGG | + | chr3.1:4596358-4596377 | MS.gene84382:intron | 20.0% |
| !!! | GATAACTTGTTTAAAAACAT+TGG | - | chr3.1:4598809-4598828 | None:intergenic | 20.0% |
| !!! | TATTCATGTGGATTTTAAAT+TGG | + | chr3.1:4598007-4598026 | MS.gene84382:intron | 20.0% |
| !!! | TGATTTTTCTTGAATTGTAA+GGG | + | chr3.1:4598603-4598622 | MS.gene84382:intron | 20.0% |
| !!! | TGTTTTTAAACAAGTTATCA+AGG | + | chr3.1:4598810-4598829 | MS.gene84382:CDS | 20.0% |
| !!! | TTAATGTCTCTTTTAAAGTT+TGG | + | chr3.1:4598551-4598570 | MS.gene84382:intron | 20.0% |
| !!! | TTTTTTTCTCCTTATATCAA+AGG | + | chr3.1:4598324-4598343 | MS.gene84382:intron | 20.0% |
| ! | AAACAATAAAAAGGAGAAAG+AGG | - | chr3.1:4595789-4595808 | None:intergenic | 25.0% |
| ! | AACATAGCTATGTAATTTAC+TGG | - | chr3.1:4598920-4598939 | None:intergenic | 25.0% |
| ! | AAGTTTAAATAGTAAGAGAG+AGG | + | chr3.1:4597001-4597020 | MS.gene84382:intron | 25.0% |
| ! | AATGAAGACATGCATAAAAA+AGG | + | chr3.1:4598524-4598543 | MS.gene84382:intron | 25.0% |
| ! | AATGTCAATCCTTTGATATA+AGG | - | chr3.1:4598336-4598355 | None:intergenic | 25.0% |
| ! | ACAGTGAAGATTTAATTGAA+TGG | - | chr3.1:4599353-4599372 | None:intergenic | 25.0% |
| ! | ACTTGTTTAAAAACATTGGA+AGG | - | chr3.1:4598805-4598824 | None:intergenic | 25.0% |
| ! | AGAAAAATCATGTCTTAACA+TGG | - | chr3.1:4598593-4598612 | None:intergenic | 25.0% |
| ! | AGAACATAAAAGATCACAAA+AGG | - | chr3.1:4599164-4599183 | None:intergenic | 25.0% |
| ! | AGAAGGATATAAACCAATAA+TGG | - | chr3.1:4599291-4599310 | None:intergenic | 25.0% |
| ! | AGTTTAAATAGTAAGAGAGA+GGG | + | chr3.1:4597002-4597021 | MS.gene84382:intron | 25.0% |
| ! | ATAAAATTATAAACGGGATG+GGG | + | chr3.1:4597111-4597130 | MS.gene84382:intron | 25.0% |
| ! | ATATTGCTGCAAAAAAATTG+AGG | + | chr3.1:4598374-4598393 | MS.gene84382:intron | 25.0% |
| ! | ATTAAGTATGCATTTGAATG+AGG | + | chr3.1:4597673-4597692 | MS.gene84382:intron | 25.0% |
| ! | CATAAAATTATAAACGGGAT+GGG | + | chr3.1:4597110-4597129 | MS.gene84382:intron | 25.0% |
| ! | CTTATGAAAAGGTCTTTATA+AGG | + | chr3.1:4596395-4596414 | MS.gene84382:intron | 25.0% |
| ! | TAAATATGATGTCTACGTAA+CGG | - | chr3.1:4597605-4597624 | None:intergenic | 25.0% |
| ! | TATAAGGTTATAGATGTTCA+TGG | + | chr3.1:4596411-4596430 | MS.gene84382:intron | 25.0% |
| ! | TCATAAAATTATAAACGGGA+TGG | + | chr3.1:4597109-4597128 | MS.gene84382:intron | 25.0% |
| ! | TGACAAATTTGAATGTGTAT+TGG | - | chr3.1:4599263-4599282 | None:intergenic | 25.0% |
| ! | TTCAACTTACATATTCCATT+TGG | - | chr3.1:4597534-4597553 | None:intergenic | 25.0% |
| ! | TTCTAGCCATCTTATAATTT+CGG | - | chr3.1:4597276-4597295 | None:intergenic | 25.0% |
| !! | AAAGTTTGGAACTAGATATT+TGG | + | chr3.1:4598565-4598584 | MS.gene84382:intron | 25.0% |
| !! | AATACACAGTTTAGTTTAAC+AGG | + | chr3.1:4598666-4598685 | MS.gene84382:intron | 25.0% |
| !! | ACCAAAAGACATTTTATTAG+AGG | + | chr3.1:4598771-4598790 | MS.gene84382:CDS | 25.0% |
| !! | ACCTCTAATAAAATGTCTTT+TGG | - | chr3.1:4598775-4598794 | None:intergenic | 25.0% |
| !! | ATAGTTTTCCACTTATGAAA+AGG | + | chr3.1:4596384-4596403 | MS.gene84382:intron | 25.0% |
| !! | GATTTTTCTTGAATTGTAAG+GGG | + | chr3.1:4598604-4598623 | MS.gene84382:intron | 25.0% |
| !! | TATAAAGACCTTTTCATAAG+TGG | - | chr3.1:4596395-4596414 | None:intergenic | 25.0% |
| !! | TTTTGCTTGTTCTGTTAAAA+CGG | + | chr3.1:4599658-4599677 | MS.gene84382:intron | 25.0% |
| !!! | ATTATTGGTTTATATCCTTC+TGG | + | chr3.1:4599290-4599309 | MS.gene84382:intron | 25.0% |
| !!! | GTCTACTTAGAATTTAGTTT+TGG | - | chr3.1:4597484-4597503 | None:intergenic | 25.0% |
| !!! | TTTTTAGTACAGTTAGTGTT+TGG | + | chr3.1:4599315-4599334 | MS.gene84382:intron | 25.0% |
| AAAACCAACTTATAGAGTGA+GGG | - | chr3.1:4597232-4597251 | None:intergenic | 30.0% | |
| AATAAGCAGAAAACAACTCA+TGG | + | chr3.1:4596209-4596228 | MS.gene84382:intron | 30.0% | |
| ACGTTAGTAGATATCATGAA+AGG | + | chr3.1:4598127-4598146 | MS.gene84382:intron | 30.0% | |
| ACTGTACTAAAAAAACCAGA+AGG | - | chr3.1:4599308-4599327 | None:intergenic | 30.0% | |
| AGATCTTGAAACTACATTTG+AGG | + | chr3.1:4599753-4599772 | MS.gene84382:CDS | 30.0% | |
| AGCTTAAAGCTAATCCAAAA+AGG | - | chr3.1:4596335-4596354 | None:intergenic | 30.0% | |
| ATGATTATTATCAGACTTGC+TGG | - | chr3.1:4598248-4598267 | None:intergenic | 30.0% | |
| ATGTTCATGGAGAAGTTAAA+CGG | + | chr3.1:4596424-4596443 | MS.gene84382:intron | 30.0% | |
| ATTTGTCACATCACCATTAT+TGG | + | chr3.1:4599275-4599294 | MS.gene84382:intron | 30.0% | |
| GCTTAAAGCTAATCCAAAAA+GGG | - | chr3.1:4596334-4596353 | None:intergenic | 30.0% | |
| GGAGAAAAATCATAGAAGAT+AGG | + | chr3.1:4597039-4597058 | MS.gene84382:intron | 30.0% | |
| GTTCAAAAACTTCATAGTTG+TGG | + | chr3.1:4596515-4596534 | MS.gene84382:intron | 30.0% | |
| TAAAAAGGAGAAAGAGGAAA+AGG | - | chr3.1:4595783-4595802 | None:intergenic | 30.0% | |
| TACCATAAAGAACAAGACAA+TGG | - | chr3.1:4595819-4595838 | None:intergenic | 30.0% | |
| TTGTTCCCTATGAAAAGAAA+CGG | - | chr3.1:4596739-4596758 | None:intergenic | 30.0% | |
| ! | AAAATACTTGAAAGAGCACA+TGG | - | chr3.1:4599415-4599434 | None:intergenic | 30.0% |
| ! | AAGGAAAAACTGACAGATTT+TGG | - | chr3.1:4599145-4599164 | None:intergenic | 30.0% |
| ! | AATATCTGGTTAGTCAAACT+TGG | - | chr3.1:4598167-4598186 | None:intergenic | 30.0% |
| ! | ATGGAATATGTAAGTTGAAG+TGG | + | chr3.1:4597535-4597554 | MS.gene84382:intron | 30.0% |
| ! | ATGTAAAGTACAAAGTACTC+TGG | - | chr3.1:4599018-4599037 | None:intergenic | 30.0% |
| ! | ATGTGGATTTTAAATTGGCA+TGG | + | chr3.1:4598012-4598031 | MS.gene84382:intron | 30.0% |
| ! | GAAATCCGTTTCTTTTCATA+GGG | + | chr3.1:4596731-4596750 | MS.gene84382:intron | 30.0% |
| ! | TGAAATCCGTTTCTTTTCAT+AGG | + | chr3.1:4596730-4596749 | MS.gene84382:intron | 30.0% |
| ! | TGATGATGTGTTTCAGAAAA+TGG | + | chr3.1:4597933-4597952 | MS.gene84382:CDS | 30.0% |
| ! | TGATGATGTTAGAGAACTAA+AGG | + | chr3.1:4596956-4596975 | MS.gene84382:CDS | 30.0% |
| ! | TGCTGATTGTAGAAAATAGT+GGG | - | chr3.1:4599599-4599618 | None:intergenic | 30.0% |
| ! | TTACATATTCCATTTGGTTC+TGG | - | chr3.1:4597528-4597547 | None:intergenic | 30.0% |
| ! | TTCCATTGTCTTGTTCTTTA+TGG | + | chr3.1:4595814-4595833 | MS.gene84382:intron | 30.0% |
| ! | TTCTTGACTTACGACATTTT+TGG | + | chr3.1:4596088-4596107 | MS.gene84382:intron | 30.0% |
| ! | TTGCTGATTGTAGAAAATAG+TGG | - | chr3.1:4599600-4599619 | None:intergenic | 30.0% |
| !! | AGATATCATGAAAGGTACTT+GGG | + | chr3.1:4598135-4598154 | MS.gene84382:intron | 30.0% |
| !! | ATTAGCTTTAAGCTTATGAG+AGG | + | chr3.1:4596341-4596360 | MS.gene84382:intron | 30.0% |
| !! | GTGTAACGAAGATTTTGAAA+AGG | + | chr3.1:4595961-4595980 | MS.gene84382:CDS | 30.0% |
| !! | TAGATATCATGAAAGGTACT+TGG | + | chr3.1:4598134-4598153 | MS.gene84382:intron | 30.0% |
| !!! | ACTCTATAAGTTGGTTTTGT+TGG | + | chr3.1:4597234-4597253 | MS.gene84382:intron | 30.0% |
| !!! | GTAGAAGATTTTGTTTTGTG+TGG | + | chr3.1:4595894-4595913 | MS.gene84382:CDS | 30.0% |
| AAAGTCCATCAAAGATCCAT+TGG | + | chr3.1:4597294-4597313 | MS.gene84382:intron | 35.0% | |
| AAGTCCATCAAAGATCCATT+GGG | + | chr3.1:4597295-4597314 | MS.gene84382:intron | 35.0% | |
| AATCATAGAAGATAGGCAGA+AGG | + | chr3.1:4597046-4597065 | MS.gene84382:intron | 35.0% | |
| AATCCTACCAAATAGACTTG+TGG | - | chr3.1:4597453-4597472 | None:intergenic | 35.0% | |
| AGAACATCTTCTGTTGTCTA+AGG | + | chr3.1:4599114-4599133 | MS.gene84382:intron | 35.0% | |
| AGACTATTTGAGAGAGCTTA+AGG | - | chr3.1:4596253-4596272 | None:intergenic | 35.0% | |
| AGCCATCTTATAATTTCGGT+TGG | - | chr3.1:4597272-4597291 | None:intergenic | 35.0% | |
| ATACTATGTAACATGACCTG+AGG | + | chr3.1:4596046-4596065 | MS.gene84382:intron | 35.0% | |
| ATCATAGAAGATAGGCAGAA+GGG | + | chr3.1:4597047-4597066 | MS.gene84382:intron | 35.0% | |
| ATGTGTTACGAGTTCTACAT+TGG | + | chr3.1:4597376-4597395 | MS.gene84382:intron | 35.0% | |
| CAAAAAAATTGAGGACAACC+AGG | + | chr3.1:4598383-4598402 | MS.gene84382:intron | 35.0% | |
| CAAAACCAACTTATAGAGTG+AGG | - | chr3.1:4597233-4597252 | None:intergenic | 35.0% | |
| CATCTTAAATCTAACTCCAC+AGG | + | chr3.1:4595753-4595772 | MS.gene84382:CDS | 35.0% | |
| CTGTTAAAACGGATATTTGC+TGG | + | chr3.1:4599669-4599688 | MS.gene84382:intron | 35.0% | |
| CTTGAAACTACATTTGAGGA+AGG | + | chr3.1:4599757-4599776 | MS.gene84382:CDS | 35.0% | |
| GCAGACAGAAAAAGAAAAAC+TGG | - | chr3.1:4596799-4596818 | None:intergenic | 35.0% | |
| GCCATCTTATAATTTCGGTT+GGG | - | chr3.1:4597271-4597290 | None:intergenic | 35.0% | |
| GGAAATAATCAACTCAACTG+TGG | + | chr3.1:4598831-4598850 | MS.gene84382:CDS | 35.0% | |
| GTCATCACATCTAACTTCTA+AGG | + | chr3.1:4597805-4597824 | MS.gene84382:intron | 35.0% | |
| TAAATAGTAAGAGAGAGGGA+GGG | + | chr3.1:4597006-4597025 | MS.gene84382:intron | 35.0% | |
| TACTATGTAACATGACCTGA+GGG | + | chr3.1:4596047-4596066 | MS.gene84382:intron | 35.0% | |
| TATAATCCAAACAGTTCCGT+AGG | + | chr3.1:4596308-4596327 | MS.gene84382:intron | 35.0% | |
| TCACATTCTTTGATTGCTCA+GGG | + | chr3.1:4596638-4596657 | MS.gene84382:intron | 35.0% | |
| TGTGTATTGGAAACCCTATT+CGG | - | chr3.1:4599250-4599269 | None:intergenic | 35.0% | |
| TGTTCATGGAGAAGTTAAAC+GGG | + | chr3.1:4596425-4596444 | MS.gene84382:intron | 35.0% | |
| TTAAATAGTAAGAGAGAGGG+AGG | + | chr3.1:4597005-4597024 | MS.gene84382:intron | 35.0% | |
| TTGTCAAATAGTGGCTATAG+CGG | + | chr3.1:4599538-4599557 | MS.gene84382:intron | 35.0% | |
| TTTGCTGGAAAATTCTTTGC+AGG | + | chr3.1:4599684-4599703 | MS.gene84382:intron | 35.0% | |
| ! | AATTTCTTCTGCTCGTTTTG+AGG | + | chr3.1:4596908-4596927 | MS.gene84382:CDS | 35.0% |
| ! | AGGGAATCAAAGGCATAATA+TGG | + | chr3.1:4597066-4597085 | MS.gene84382:intron | 35.0% |
| ! | CTTTTACTCTACGAAATCCT+GGG | - | chr3.1:4597978-4597997 | None:intergenic | 35.0% |
| ! | GAATCAAAGGCATAATATGG+TGG | + | chr3.1:4597069-4597088 | MS.gene84382:intron | 35.0% |
| ! | TGTTCTCTTTTCCTTTGCTA+AGG | - | chr3.1:4598058-4598077 | None:intergenic | 35.0% |
| ! | TTCGAAAGAAAACCGTTTTG+AGG | - | chr3.1:4598298-4598317 | None:intergenic | 35.0% |
| !! | CACAAAGTGTTGTCAAATAG+TGG | + | chr3.1:4599529-4599548 | MS.gene84382:intron | 35.0% |
| !! | GATATCATGAAAGGTACTTG+GGG | + | chr3.1:4598136-4598155 | MS.gene84382:intron | 35.0% |
| !! | TCTGTCTTTCTTTGAAGCAT+AGG | + | chr3.1:4595934-4595953 | MS.gene84382:CDS | 35.0% |
| !!! | GACATTTTATTAGAGGTGCT+TGG | + | chr3.1:4598778-4598797 | MS.gene84382:CDS | 35.0% |
| AAACTTCCGCACGTAATATC+TGG | - | chr3.1:4598181-4598200 | None:intergenic | 40.0% | |
| AAATATCCTGCCTACCGAAT+AGG | + | chr3.1:4599233-4599252 | MS.gene84382:intron | 40.0% | |
| AAGAGGAAAAGGTTAACCTG+TGG | - | chr3.1:4595772-4595791 | None:intergenic | 40.0% | |
| AATATCCTGCCTACCGAATA+GGG | + | chr3.1:4599234-4599253 | MS.gene84382:intron | 40.0% | |
| ACATCTTCTGTTGTCTAAGG+TGG | + | chr3.1:4599117-4599136 | MS.gene84382:intron | 40.0% | |
| ATGCTACCTAAAAGGCTTCA+AGG | - | chr3.1:4599058-4599077 | None:intergenic | 40.0% | |
| CAAATAGACTTGTGGAGAGA+GGG | - | chr3.1:4597445-4597464 | None:intergenic | 40.0% | |
| CAATGTGTGACTCTTAACAC+TGG | - | chr3.1:4597183-4597202 | None:intergenic | 40.0% | |
| CCAGGATTTCGTAGAGTAAA+AGG | + | chr3.1:4597976-4597995 | MS.gene84382:CDS | 40.0% | |
| CTCACATTCTTTGATTGCTC+AGG | + | chr3.1:4596637-4596656 | MS.gene84382:intron | 40.0% | |
| GACTAACCAGATATTACGTG+CGG | + | chr3.1:4598172-4598191 | MS.gene84382:intron | 40.0% | |
| GCCCAACCGAAATTATAAGA+TGG | + | chr3.1:4597267-4597286 | MS.gene84382:intron | 40.0% | |
| GCTATAGCACTATAGTACAG+TGG | + | chr3.1:4599466-4599485 | MS.gene84382:intron | 40.0% | |
| GCTTGCAGATGATAAAACAC+AGG | + | chr3.1:4595865-4595884 | MS.gene84382:intron | 40.0% | |
| GGATTTCGTAGAGTAAAAGG+AGG | + | chr3.1:4597979-4597998 | MS.gene84382:CDS | 40.0% | |
| TATAAACGGGATGGGGTTAT+GGG | + | chr3.1:4597118-4597137 | MS.gene84382:intron | 40.0% | |
| TATCTGGAAACAGAACACAG+AGG | + | chr3.1:4597905-4597924 | MS.gene84382:CDS | 40.0% | |
| TATTGGAAACCCTATTCGGT+AGG | - | chr3.1:4599246-4599265 | None:intergenic | 40.0% | |
| TCATCCCTCACTCTATAAGT+TGG | + | chr3.1:4597225-4597244 | MS.gene84382:intron | 40.0% | |
| TCCTTGTGTAATAGCAAGCA+TGG | - | chr3.1:4598989-4599008 | None:intergenic | 40.0% | |
| TCTCCACAAGTCTATTTGGT+AGG | + | chr3.1:4597447-4597466 | MS.gene84382:intron | 40.0% | |
| TGACTCTTAACACTGGTCAT+TGG | - | chr3.1:4597176-4597195 | None:intergenic | 40.0% | |
| TGAGTTAGACCAGAACCAAA+TGG | + | chr3.1:4597516-4597535 | MS.gene84382:intron | 40.0% | |
| TGGTCAGAGTTGTCAAATAG+TGG | + | chr3.1:4599442-4599461 | MS.gene84382:intron | 40.0% | |
| TGTCATCTGACTCCTCAAAA+CGG | + | chr3.1:4598283-4598302 | MS.gene84382:intron | 40.0% | |
| TTAACACTGGTCATTGGTCA+TGG | - | chr3.1:4597170-4597189 | None:intergenic | 40.0% | |
| TTATAAACGGGATGGGGTTA+TGG | + | chr3.1:4597117-4597136 | MS.gene84382:intron | 40.0% | |
| TTGACAACACTTTGTGCTGA+TGG | - | chr3.1:4599525-4599544 | None:intergenic | 40.0% | |
| ! | AAGGAGGTGAAGTATTCATG+TGG | + | chr3.1:4597995-4598014 | MS.gene84382:intron | 40.0% |
| ! | CAGATTGATAGCCTTAGCAA+AGG | + | chr3.1:4598044-4598063 | MS.gene84382:intron | 40.0% |
| ! | CCTTTTACTCTACGAAATCC+TGG | - | chr3.1:4597979-4597998 | None:intergenic | 40.0% |
| ! | CTTACATTTGGCGTTTTTCC+TGG | - | chr3.1:4598404-4598423 | None:intergenic | 40.0% |
| ! | GACATTTTTCACGTGCTTCT+TGG | + | chr3.1:4598350-4598369 | MS.gene84382:intron | 40.0% |
| ! | TTCATTGATACACACCGACT+TGG | - | chr3.1:4598510-4598529 | None:intergenic | 40.0% |
| ! | TTTGTGCTGATGGCATATAG+CGG | - | chr3.1:4599515-4599534 | None:intergenic | 40.0% |
| !! | ACCATGCTTGCTATTACACA+AGG | + | chr3.1:4598985-4599004 | MS.gene84382:intron | 40.0% |
| !! | CTTTCTTTGAAGCATAGGCA+TGG | + | chr3.1:4595939-4595958 | MS.gene84382:CDS | 40.0% |
| !! | GAAGCCTTTTAGGTAGCATT+TGG | + | chr3.1:4599059-4599078 | MS.gene84382:intron | 40.0% |
| !!! | ATCAGACTTGCTGGTGATTT+TGG | - | chr3.1:4598239-4598258 | None:intergenic | 40.0% |
| AAAAGGCTTCAAGGTGGCTA+TGG | - | chr3.1:4599049-4599068 | None:intergenic | 45.0% | |
| ACTCTACGAAATCCTGGGAT+CGG | - | chr3.1:4597973-4597992 | None:intergenic | 45.0% | |
| ATGTCCAATCCTAGGTGTGA+GGG | + | chr3.1:4597353-4597372 | MS.gene84382:intron | 45.0% | |
| CACGCCAAATGCTACCTAAA+AGG | - | chr3.1:4599066-4599085 | None:intergenic | 45.0% | |
| CAGATACCTCGATGCTTATC+TGG | - | chr3.1:4597891-4597910 | None:intergenic | 45.0% | |
| CAGGGAAACTAATCCTCACA+TGG | + | chr3.1:4596656-4596675 | MS.gene84382:intron | 45.0% | |
| CCAAATAGACTTGTGGAGAG+AGG | - | chr3.1:4597446-4597465 | None:intergenic | 45.0% | |
| CCTCTCTCCACAAGTCTATT+TGG | + | chr3.1:4597443-4597462 | MS.gene84382:intron | 45.0% | |
| CGACAAAAGATCGAATTGCG+AGG | + | chr3.1:4597706-4597725 | MS.gene84382:intron | 45.0% | |
| CTACCTAAAAGGCTTCAAGG+TGG | - | chr3.1:4599055-4599074 | None:intergenic | 45.0% | |
| GAGAAGTTAAACGGGACTAC+AGG | + | chr3.1:4596433-4596452 | MS.gene84382:intron | 45.0% | |
| GATAGGCAGAAGGGAATCAA+AGG | + | chr3.1:4597056-4597075 | MS.gene84382:intron | 45.0% | |
| GCTAATCCAAAAAGGGCCTA+CGG | - | chr3.1:4596327-4596346 | None:intergenic | 45.0% | |
| GTGTCCCAATGGATCTTTGA+TGG | - | chr3.1:4597302-4597321 | None:intergenic | 45.0% | |
| ! | ACGTGCGGAAGTTTTCTGTT+TGG | + | chr3.1:4598187-4598206 | MS.gene84382:intron | 45.0% |
| ! | TAGCCACCTTGAAGCCTTTT+AGG | + | chr3.1:4599049-4599068 | MS.gene84382:intron | 45.0% |
| ! | TTCTGTCCAGATAAGCATCG+AGG | + | chr3.1:4597882-4597901 | MS.gene84382:intron | 45.0% |
| !! | ATTGATACACACCGACTTGG+TGG | - | chr3.1:4598507-4598526 | None:intergenic | 45.0% |
| !! | CAGATAAGCATCGAGGTATC+TGG | + | chr3.1:4597889-4597908 | MS.gene84382:intron | 45.0% |
| AAAGGGCCTACGGAACTGTT+TGG | - | chr3.1:4596317-4596336 | None:intergenic | 50.0% | |
| ACATCCCTCACACCTAGGAT+TGG | - | chr3.1:4597360-4597379 | None:intergenic | 50.0% | |
| AGCAACCTTGACCACCAAGT+CGG | + | chr3.1:4598493-4598512 | MS.gene84382:intron | 50.0% | |
| ATAGTAAGAGAGAGGGAGGG+AGG | + | chr3.1:4597009-4597028 | MS.gene84382:intron | 50.0% | |
| CACACCTAGGATTGGACATC+TGG | - | chr3.1:4597352-4597371 | None:intergenic | 50.0% | |
| CACATGCATAGTGCCATGTG+AGG | - | chr3.1:4596672-4596691 | None:intergenic | 50.0% | |
| CCTACTGCTGCTGTGTTATC+AGG | + | chr3.1:4596771-4596790 | MS.gene84382:CDS | 50.0% | |
| CCTGATAACACAGCAGCAGT+AGG | - | chr3.1:4596774-4596793 | None:intergenic | 50.0% | |
| CTCAACTGTGGCTGAGTATG+TGG | + | chr3.1:4598843-4598862 | MS.gene84382:CDS | 50.0% | |
| CTGGTCATTGGTCATGGACT+CGG | - | chr3.1:4597164-4597183 | None:intergenic | 50.0% | |
| GATGTCCAATCCTAGGTGTG+AGG | + | chr3.1:4597352-4597371 | MS.gene84382:intron | 50.0% | |
| GTAACACATCCCTCACACCT+AGG | - | chr3.1:4597365-4597384 | None:intergenic | 50.0% | |
| TAGTAAGAGAGAGGGAGGGA+GGG | + | chr3.1:4597010-4597029 | MS.gene84382:intron | 50.0% | |
| TGCTCCAGATGTCCAATCCT+AGG | + | chr3.1:4597345-4597364 | MS.gene84382:intron | 50.0% | |
| TGTGGCTGAGTATGTGGAGA+AGG | + | chr3.1:4598849-4598868 | MS.gene84382:CDS | 50.0% | |
| ! | ACAGTTCCGTAGGCCCTTTT+TGG | + | chr3.1:4596318-4596337 | MS.gene84382:intron | 50.0% |
| AAAGCTGCACAACCGATCCC+AGG | + | chr3.1:4597958-4597977 | MS.gene84382:CDS | 55.0% | |
| ACACCCACTATCAGGCTGCT+CGG | + | chr3.1:4597318-4597337 | MS.gene84382:intron | 55.0% | |
| CCATTGGGACACCCACTATC+AGG | + | chr3.1:4597310-4597329 | MS.gene84382:intron | 55.0% | |
| GGAAACCCTATTCGGTAGGC+AGG | - | chr3.1:4599242-4599261 | None:intergenic | 55.0% | |
| GTAACATGACCTGAGGGCTG+AGG | + | chr3.1:4596053-4596072 | MS.gene84382:intron | 55.0% | |
| !! | ACACACCGACTTGGTGGTCA+AGG | - | chr3.1:4598501-4598520 | None:intergenic | 55.0% |
| !! | CCTGATAGTGGGTGTCCCAA+TGG | - | chr3.1:4597313-4597332 | None:intergenic | 55.0% |
| AAGAGAGAGGGAGGGAGGGA+GGG | + | chr3.1:4597014-4597033 | MS.gene84382:intron | 60.0% | |
| CACCCACTATCAGGCTGCTC+GGG | + | chr3.1:4597319-4597338 | MS.gene84382:intron | 60.0% | |
| GACCCGAGCAGCCTGATAGT+GGG | - | chr3.1:4597324-4597343 | None:intergenic | 60.0% | |
| TAAGAGAGAGGGAGGGAGGG+AGG | + | chr3.1:4597013-4597032 | MS.gene84382:intron | 60.0% | |
| TGACCCGAGCAGCCTGATAG+TGG | - | chr3.1:4597325-4597344 | None:intergenic | 60.0% | |
| CACGTTCAGCCTCAGCCCTC+AGG | - | chr3.1:4596065-4596084 | None:intergenic | 65.0% | |
| AGAGAGGGAGGGAGGGAGGG+AGG | + | chr3.1:4597017-4597036 | MS.gene84382:intron | 70.0% | |
| GAGAGGGAGGGAGGGAGGGA+GGG | + | chr3.1:4597018-4597037 | MS.gene84382:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 4595730 | 4599822 | 4595730 | ID=MS.gene84382 |
| chr3.1 | mRNA | 4595730 | 4599822 | 4595730 | ID=MS.gene84382.t1;Parent=MS.gene84382 |
| chr3.1 | exon | 4595730 | 4595774 | 4595730 | ID=MS.gene84382.t1.exon1;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4595730 | 4595774 | 4595730 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4595873 | 4595982 | 4595873 | ID=MS.gene84382.t1.exon2;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4595873 | 4595982 | 4595873 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4596752 | 4596792 | 4596752 | ID=MS.gene84382.t1.exon3;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4596752 | 4596792 | 4596752 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4596901 | 4596977 | 4596901 | ID=MS.gene84382.t1.exon4;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4596901 | 4596977 | 4596901 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4597892 | 4598000 | 4597892 | ID=MS.gene84382.t1.exon5;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4597892 | 4598000 | 4597892 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4598405 | 4598418 | 4598405 | ID=MS.gene84382.t1.exon6;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4598405 | 4598418 | 4598405 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4598769 | 4598870 | 4598769 | ID=MS.gene84382.t1.exon7;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4598769 | 4598870 | 4598769 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| chr3.1 | exon | 4599706 | 4599822 | 4599706 | ID=MS.gene84382.t1.exon8;Parent=MS.gene84382.t1 |
| chr3.1 | CDS | 4599706 | 4599822 | 4599706 | ID=cds.MS.gene84382.t1;Parent=MS.gene84382.t1 |
| Gene Sequence |
| Protein sequence |
