Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85599.t1 | XP_013468782.1 | 94.5 | 730 | 39 | 1 | 1 | 730 | 1 | 729 | 0.00E+00 | 1245.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85599.t1 | Q9FHM4 | 58.5 | 743 | 250 | 11 | 1 | 728 | 1 | 700 | 1.1e-221 | 771.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85599.t1 | A0A072VLD1 | 94.5 | 730 | 39 | 1 | 1 | 730 | 1 | 729 | 0.0e+00 | 1245.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene85599 | 0.825398 | 4.79E-54 | -1.69E-46 |
| MS.gene049397 | MS.gene85599 | 0.841795 | 3.83E-58 | -1.69E-46 |
| MS.gene049596 | MS.gene85599 | 0.840664 | 7.59E-58 | -1.69E-46 |
| MS.gene049989 | MS.gene85599 | 0.863833 | 1.88E-64 | -1.69E-46 |
| MS.gene050297 | MS.gene85599 | 0.893465 | 6.13E-75 | -1.69E-46 |
| MS.gene05124 | MS.gene85599 | 0.844479 | 7.37E-59 | -1.69E-46 |
| MS.gene051742 | MS.gene85599 | 0.814586 | 1.43E-51 | -1.69E-46 |
| MS.gene051914 | MS.gene85599 | 0.821313 | 4.31E-53 | -1.69E-46 |
| MS.gene051955 | MS.gene85599 | 0.860736 | 1.68E-63 | -1.69E-46 |
| MS.gene052143 | MS.gene85599 | 0.863632 | 2.17E-64 | -1.69E-46 |
| MS.gene052308 | MS.gene85599 | 0.854668 | 1.06E-61 | -1.69E-46 |
| MS.gene052367 | MS.gene85599 | 0.888029 | 8.48E-73 | -1.69E-46 |
| MS.gene053173 | MS.gene85599 | 0.881114 | 3.14E-70 | -1.69E-46 |
| MS.gene053348 | MS.gene85599 | 0.851649 | 7.74E-61 | -1.69E-46 |
| MS.gene053416 | MS.gene85599 | 0.858126 | 1.02E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene85599 | 0.85595 | 4.47E-62 | -1.69E-46 |
| MS.gene05369 | MS.gene85599 | 0.824203 | 9.17E-54 | -1.69E-46 |
| MS.gene054551 | MS.gene85599 | 0.879402 | 1.28E-69 | -1.69E-46 |
| MS.gene054552 | MS.gene85599 | 0.825932 | 3.58E-54 | -1.69E-46 |
| MS.gene054593 | MS.gene85599 | 0.866418 | 2.89E-65 | -1.69E-46 |
| MS.gene054633 | MS.gene85599 | 0.805973 | 1.03E-49 | -1.69E-46 |
| MS.gene054643 | MS.gene85599 | 0.838736 | 2.41E-57 | -1.69E-46 |
| MS.gene054885 | MS.gene85599 | 0.800241 | 1.58E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene85599 | 0.856724 | 2.65E-62 | -1.69E-46 |
| MS.gene055411 | MS.gene85599 | 0.806486 | 8.04E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene85599 | 0.869596 | 2.75E-66 | -1.69E-46 |
| MS.gene055957 | MS.gene85599 | 0.875361 | 3.28E-68 | -1.69E-46 |
| MS.gene056041 | MS.gene85599 | 0.893142 | 8.28E-75 | -1.69E-46 |
| MS.gene056042 | MS.gene85599 | 0.817857 | 2.65E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene85599 | 0.857907 | 1.19E-62 | -1.69E-46 |
| MS.gene056526 | MS.gene85599 | 0.859585 | 3.74E-63 | -1.69E-46 |
| MS.gene057458 | MS.gene85599 | 0.869742 | 2.47E-66 | -1.69E-46 |
| MS.gene057483 | MS.gene85599 | 0.82809 | 1.09E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene85599 | 0.806556 | 7.77E-50 | -1.69E-46 |
| MS.gene058818 | MS.gene85599 | 0.839417 | 1.60E-57 | -1.69E-46 |
| MS.gene058844 | MS.gene85599 | 0.808549 | 2.93E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene85599 | 0.844646 | 6.65E-59 | -1.69E-46 |
| MS.gene059300 | MS.gene85599 | 0.831597 | 1.53E-55 | -1.69E-46 |
| MS.gene059553 | MS.gene85599 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene85599 | 0.890643 | 8.18E-74 | -1.69E-46 |
| MS.gene060565 | MS.gene85599 | 0.890259 | 1.16E-73 | -1.69E-46 |
| MS.gene06057 | MS.gene85599 | 0.855734 | 5.17E-62 | -1.69E-46 |
| MS.gene06093 | MS.gene85599 | 0.861771 | 8.12E-64 | -1.69E-46 |
| MS.gene061099 | MS.gene85599 | 0.867152 | 1.69E-65 | -1.69E-46 |
| MS.gene061260 | MS.gene85599 | 0.920693 | 9.26E-88 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85599.t1 | MTR_1g076700 | 96.164 | 730 | 27 | 1 | 1 | 730 | 1 | 729 | 0.0 | 1455 |
| MS.gene85599.t1 | MTR_6g061690 | 67.028 | 737 | 206 | 11 | 1 | 728 | 1 | 709 | 0.0 | 948 |
| MS.gene85599.t1 | MTR_7g075220 | 48.290 | 731 | 318 | 12 | 1 | 726 | 311 | 986 | 0.0 | 591 |
| MS.gene85599.t1 | MTR_5g093860 | 51.613 | 527 | 243 | 6 | 12 | 528 | 12 | 536 | 2.29e-172 | 507 |
| MS.gene85599.t1 | MTR_1g038840 | 46.382 | 539 | 272 | 4 | 14 | 538 | 15 | 550 | 2.75e-156 | 466 |
| MS.gene85599.t1 | MTR_8g041400 | 42.782 | 568 | 305 | 5 | 9 | 566 | 8 | 565 | 8.13e-147 | 441 |
| MS.gene85599.t1 | MTR_1g038840 | 45.614 | 513 | 262 | 4 | 40 | 538 | 1 | 510 | 1.37e-142 | 430 |
| MS.gene85599.t1 | MTR_3g085440 | 40.728 | 577 | 318 | 8 | 13 | 570 | 17 | 588 | 3.32e-136 | 414 |
| MS.gene85599.t1 | MTR_3g085440 | 44.444 | 414 | 225 | 3 | 13 | 422 | 17 | 429 | 1.40e-108 | 337 |
| MS.gene85599.t1 | MTR_8g023220 | 37.160 | 514 | 281 | 10 | 9 | 505 | 8 | 496 | 4.36e-94 | 301 |
| MS.gene85599.t1 | MTR_4g077600 | 77.778 | 54 | 12 | 0 | 24 | 77 | 185 | 238 | 2.77e-19 | 88.2 |
| MS.gene85599.t1 | MTR_8g032090 | 46.226 | 106 | 52 | 2 | 228 | 332 | 187 | 288 | 2.27e-17 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85599.t1 | AT5G51600 | 61.373 | 743 | 229 | 11 | 1 | 728 | 1 | 700 | 0.0 | 855 |
| MS.gene85599.t1 | AT3G60840 | 46.648 | 731 | 330 | 15 | 1 | 726 | 1 | 676 | 0.0 | 593 |
| MS.gene85599.t1 | AT5G62250 | 57.407 | 540 | 207 | 8 | 10 | 538 | 4 | 531 | 0.0 | 530 |
| MS.gene85599.t1 | AT5G62250 | 57.407 | 540 | 207 | 8 | 10 | 538 | 4 | 531 | 0.0 | 530 |
| MS.gene85599.t1 | AT5G55230 | 50.095 | 525 | 253 | 4 | 12 | 528 | 12 | 535 | 8.88e-173 | 508 |
| MS.gene85599.t1 | AT5G55230 | 50.095 | 525 | 253 | 4 | 12 | 528 | 12 | 535 | 8.88e-173 | 508 |
| MS.gene85599.t1 | AT4G26760 | 48.762 | 525 | 260 | 4 | 12 | 528 | 12 | 535 | 4.09e-170 | 501 |
| MS.gene85599.t1 | AT5G55230 | 47.653 | 554 | 252 | 5 | 12 | 528 | 12 | 564 | 5.28e-167 | 494 |
| MS.gene85599.t1 | AT1G14690 | 43.174 | 586 | 302 | 10 | 11 | 571 | 13 | 592 | 6.77e-158 | 470 |
| MS.gene85599.t1 | AT1G14690 | 43.174 | 586 | 302 | 10 | 11 | 571 | 13 | 592 | 6.77e-158 | 470 |
| MS.gene85599.t1 | AT2G01910 | 43.178 | 579 | 290 | 10 | 6 | 553 | 8 | 578 | 1.65e-153 | 459 |
| MS.gene85599.t1 | AT2G01910 | 42.752 | 545 | 273 | 10 | 40 | 553 | 1 | 537 | 1.21e-140 | 425 |
| MS.gene85599.t1 | AT2G38720 | 43.321 | 524 | 278 | 6 | 19 | 528 | 12 | 530 | 6.89e-134 | 407 |
| MS.gene85599.t1 | AT1G27920 | 39.962 | 528 | 298 | 9 | 13 | 527 | 17 | 538 | 5.05e-122 | 377 |
| MS.gene85599.t1 | AT1G27920 | 40.100 | 399 | 227 | 6 | 10 | 400 | 14 | 408 | 1.21e-88 | 285 |
Find 173 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTGTTTATTAGATAATT+TGG | 0.084271 | 1.3:+55188982 | MS.gene85599:intron |
| TCGACTGCACCATCTATTTC+TGG | 0.205819 | 1.3:-55190873 | None:intergenic |
| AGCCTCTCAATGGAAATTTA+TGG | 0.269350 | 1.3:+55189971 | MS.gene85599:CDS |
| TTTACACTCTGGGGCTTTGA+TGG | 0.272765 | 1.3:-55192210 | None:intergenic |
| CTCTGGGGCTTTGATGGGCT+TGG | 0.280888 | 1.3:-55192204 | None:intergenic |
| CTTGGAATTCATCCCAGTTT+AGG | 0.283771 | 1.3:+55190300 | MS.gene85599:CDS |
| AGGTCCTTCATCTCCTAAAC+TGG | 0.294011 | 1.3:-55190313 | None:intergenic |
| TTTGTCCCTGAAGCTTCTTC+AGG | 0.302692 | 1.3:-55192146 | None:intergenic |
| TTAGATGAGAGGGGAGAAAA+AGG | 0.305885 | 1.3:-55193085 | None:intergenic |
| ATCTCTTCTGTATGAACTTC+AGG | 0.314909 | 1.3:+55188869 | MS.gene85599:CDS |
| CCAAAGCTTCCTCTTTAACT+TGG | 0.337746 | 1.3:-55191067 | None:intergenic |
| CTTGGCTTGAGGAATATAAC+AGG | 0.339409 | 1.3:+55191147 | MS.gene85599:CDS |
| AGGTCCCTTCTTTACACTCT+GGG | 0.353573 | 1.3:-55192220 | None:intergenic |
| GCAGGACCTGAAGAAGCTTC+AGG | 0.359076 | 1.3:+55192140 | MS.gene85599:intron |
| AGGGAAGGACTGTACTCTTT+GGG | 0.359646 | 1.3:-55189995 | None:intergenic |
| GCAGAACAGGAGGCACTATA+TGG | 0.361441 | 1.3:+55192174 | MS.gene85599:CDS |
| GCATTGTTGTTGCAAGATCT+TGG | 0.363546 | 1.3:-55190518 | None:intergenic |
| GTATCATTACTTACACTCTT+AGG | 0.365452 | 1.3:-55190333 | None:intergenic |
| GGTGCTCTTGAACCGTCTTT+AGG | 0.365482 | 1.3:-55190221 | None:intergenic |
| ATAAGTCTAGAGCTCAATTA+AGG | 0.368083 | 1.3:+55189102 | MS.gene85599:CDS |
| ACTTGTTTATTAGATAATTT+GGG | 0.374296 | 1.3:+55188983 | MS.gene85599:intron |
| AGCCGCAGTCATTGCCTTGC+AGG | 0.375037 | 1.3:-55193215 | None:intergenic |
| AAGGGAAGGACTGTACTCTT+TGG | 0.375363 | 1.3:-55189996 | None:intergenic |
| TTCTTGCATACTCTTCCTTC+AGG | 0.376287 | 1.3:-55189868 | None:intergenic |
| CCAAGTTAAAGAGGAAGCTT+TGG | 0.381142 | 1.3:+55191067 | MS.gene85599:CDS |
| TGCTGTTATACAACAACTTC+GGG | 0.381393 | 1.3:+55190371 | MS.gene85599:CDS |
| ATAGCATGGGAAAAGGAAAA+AGG | 0.383625 | 1.3:+55191708 | MS.gene85599:CDS |
| ATAGGAATAGGCACTGTCTT+TGG | 0.383703 | 1.3:-55193256 | None:intergenic |
| AAGAGATCCACAAGTTGTTT+CGG | 0.388576 | 1.3:-55188853 | None:intergenic |
| AACAGCATTCTGTCTCTATC+AGG | 0.394629 | 1.3:-55189026 | None:intergenic |
| AACTTTAAGCAGACAGTCCT+TGG | 0.399140 | 1.3:+55190282 | MS.gene85599:CDS |
| CAACAACAATGCTGGAGCTC+TGG | 0.403421 | 1.3:+55190529 | MS.gene85599:CDS |
| GGTGTTTCTTGTTTATCATC+AGG | 0.404694 | 1.3:+55192396 | MS.gene85599:CDS |
| CAAAGGAATATTCAATCTCT+TGG | 0.405068 | 1.3:-55193414 | None:intergenic |
| CGAAGAGGACTGGATATTGC+TGG | 0.406123 | 1.3:+55192992 | MS.gene85599:CDS |
| CCTCTTTAACTTGGGCAACC+TGG | 0.414721 | 1.3:-55191058 | None:intergenic |
| ATAGAAACTGACGACGGAAC+TGG | 0.416026 | 1.3:-55193328 | None:intergenic |
| TCGCCTGATCGACCTTCCTT+CGG | 0.419017 | 1.3:-55189079 | None:intergenic |
| TAGGTCCCTTCTTTACACTC+TGG | 0.426732 | 1.3:-55192221 | None:intergenic |
| CATTTAGTTCCAGAAATAGA+TGG | 0.427244 | 1.3:+55190864 | MS.gene85599:CDS |
| TTACACTCTGGGGCTTTGAT+GGG | 0.427747 | 1.3:-55192209 | None:intergenic |
| GCCGTTGAAGCTATAGAATC+TGG | 0.431116 | 1.3:+55190900 | MS.gene85599:CDS |
| GGGTTGGTTAACAAAATTCC+AGG | 0.433979 | 1.3:+55191329 | MS.gene85599:CDS |
| GTACCGAAGGAAGGTCGATC+AGG | 0.435947 | 1.3:+55189076 | MS.gene85599:CDS |
| ACAGTAGCTGACGACGGAAC+TGG | 0.436358 | 1.3:-55193367 | None:intergenic |
| GTATAACAGCAGCCAGTTGC+TGG | 0.439967 | 1.3:-55190359 | None:intergenic |
| AATTCTCTTTGTTTAGTGCT+CGG | 0.444345 | 1.3:+55190255 | MS.gene85599:CDS |
| TAATGATACCATCCAGCAAC+TGG | 0.446976 | 1.3:+55190347 | MS.gene85599:CDS |
| GATGCTGTTGAAGGTGTTGC+AGG | 0.449140 | 1.3:-55193280 | None:intergenic |
| GGAGTCATGGTCATATTCAT+AGG | 0.449570 | 1.3:-55193307 | None:intergenic |
| AAGTCCTCGGACAAGGTGTT+TGG | 0.449901 | 1.3:-55190639 | None:intergenic |
| GGGACAAATGATAGCAGAAC+AGG | 0.452376 | 1.3:+55192161 | MS.gene85599:CDS |
| GGTGTTGCAGGGATAGGAAT+AGG | 0.452662 | 1.3:-55193268 | None:intergenic |
| CAAAGCTTCCTCTTTAACTT+GGG | 0.453861 | 1.3:-55191066 | None:intergenic |
| AGAGATTGAATATTCCTTTG+AGG | 0.459668 | 1.3:+55193417 | MS.gene85599:CDS |
| TCGAAAAGACATACTTGAAA+AGG | 0.461689 | 1.3:+55191091 | MS.gene85599:CDS |
| TAGATAATTTGGGACGAAGT+TGG | 0.463311 | 1.3:+55188993 | MS.gene85599:intron |
| CTTCAATAGGTGTATCCATC+AGG | 0.465528 | 1.3:-55190554 | None:intergenic |
| TTCTAGTCCGATCAAAATGC+TGG | 0.467416 | 1.3:+55189842 | MS.gene85599:intron |
| GGTTTCGAATTCACATATGA+TGG | 0.467496 | 1.3:+55191729 | MS.gene85599:CDS |
| AAACAAGAAACACCATCATC+CGG | 0.474834 | 1.3:-55192387 | None:intergenic |
| CATCCCAGTTTAGGAGATGA+AGG | 0.475032 | 1.3:+55190309 | MS.gene85599:CDS |
| AGTTGTTTCGGCTTGCGAAA+GGG | 0.475166 | 1.3:-55188841 | None:intergenic |
| GCCCCTCCGGTTGACATCCT+AGG | 0.475728 | 1.3:-55192240 | None:intergenic |
| AACATCTGCTGCTCTTCAAT+AGG | 0.476308 | 1.3:-55190567 | None:intergenic |
| AACTGTTCAAGCACACATGC+AGG | 0.479534 | 1.3:-55191029 | None:intergenic |
| TACTTGAAAAGGTTGAGAAA+TGG | 0.480668 | 1.3:+55191102 | MS.gene85599:CDS |
| GTTAAAATCCAGCAAAATGA+AGG | 0.480954 | 1.3:+55190791 | MS.gene85599:CDS |
| GCAGCTATCTGTTCTGCAAT+GGG | 0.484337 | 1.3:+55189155 | MS.gene85599:CDS |
| CAGGACCTGAAGAAGCTTCA+GGG | 0.489651 | 1.3:+55192141 | MS.gene85599:intron |
| TGCAAGAATTCTTCCACAGC+TGG | 0.490130 | 1.3:+55189883 | MS.gene85599:CDS |
| CACTTTGTCAACCTTTCTCA+CGG | 0.493688 | 1.3:-55192340 | None:intergenic |
| CAAGTTAAAGAGGAAGCTTT+GGG | 0.494444 | 1.3:+55191068 | MS.gene85599:CDS |
| GTTCCTTGATGCAGGAATTG+TGG | 0.496600 | 1.3:+55191004 | MS.gene85599:intron |
| AGCAGGAACGTCGTAGGCAG+CGG | 0.499177 | 1.3:+55191935 | MS.gene85599:CDS |
| TCATTCACGTGCCGTGAGAA+AGG | 0.499275 | 1.3:+55192329 | MS.gene85599:CDS |
| GAATATTCAATCTCTTGGAC+TGG | 0.500200 | 1.3:-55193409 | None:intergenic |
| AGGTGGAGGTCGAAGTATCT+AGG | 0.500263 | 1.3:+55190760 | MS.gene85599:intron |
| GCAGATTCAAAGCCTCTCAA+TGG | 0.503619 | 1.3:+55189961 | MS.gene85599:CDS |
| CTGCTGTTATACAACAACTT+CGG | 0.507700 | 1.3:+55190370 | MS.gene85599:CDS |
| GTTGTTTCGGCTTGCGAAAG+GGG | 0.510809 | 1.3:-55188840 | None:intergenic |
| TTCAGTTATTTCATCTTCTG+AGG | 0.512141 | 1.3:-55190616 | None:intergenic |
| TTGAAGCATTGCTCCTCCCA+TGG | 0.517348 | 1.3:-55192280 | None:intergenic |
| CAGCATGTAATGAAGAGTCT+TGG | 0.519087 | 1.3:+55191129 | MS.gene85599:CDS |
| ATGTGAAGCTCGAAGAGGAC+TGG | 0.520047 | 1.3:+55192982 | MS.gene85599:intron |
| AAATGCACTTCAAAATGAAA+AGG | 0.521153 | 1.3:+55190072 | MS.gene85599:CDS |
| AAAGCCCCAGAGTGTAAAGA+AGG | 0.521777 | 1.3:+55192215 | MS.gene85599:CDS |
| AGATCTTGCAACAACAATGC+TGG | 0.525162 | 1.3:+55190521 | MS.gene85599:CDS |
| CCAGGTTGCCCAAGTTAAAG+AGG | 0.526082 | 1.3:+55191058 | MS.gene85599:CDS |
| AAGTTGTTTCGGCTTGCGAA+AGG | 0.529607 | 1.3:-55188842 | None:intergenic |
| GCTTGAACAGTTTGAGCGCC+AGG | 0.530898 | 1.3:+55191040 | MS.gene85599:CDS |
| TGCAGCTATCTGTTCTGCAA+TGG | 0.531132 | 1.3:+55189154 | MS.gene85599:CDS |
| ATGATACATTATTAGATGAG+AGG | 0.534448 | 1.3:-55193096 | None:intergenic |
| GCCGCAGTCATTGCCTTGCA+GGG | 0.534568 | 1.3:-55193214 | None:intergenic |
| GATGACAATCGATATAATGC+TGG | 0.534606 | 1.3:+55191263 | MS.gene85599:CDS |
| GGCCATAAATTTCCATTGAG+AGG | 0.535029 | 1.3:-55189973 | None:intergenic |
| AATATTCCTTTGAGGAAAGA+CGG | 0.535863 | 1.3:+55193425 | MS.gene85599:CDS |
| TGATACATTATTAGATGAGA+GGG | 0.536566 | 1.3:-55193095 | None:intergenic |
| AGCTAGTCGAAGAGTCTCCA+TGG | 0.537197 | 1.3:+55192263 | MS.gene85599:CDS |
| AAGGGACCTAGGATGTCAAC+CGG | 0.537940 | 1.3:+55192234 | MS.gene85599:CDS |
| GCGACCTGTGCACATTAGAC+AGG | 0.538218 | 1.3:+55189181 | MS.gene85599:CDS |
| ACAAATCAGTTTCATCTACA+AGG | 0.539176 | 1.3:-55190015 | None:intergenic |
| GCAGGAACGTCGTAGGCAGC+GGG | 0.541029 | 1.3:+55191936 | MS.gene85599:CDS |
| TCTTCGACTAGCTGCCCCTC+CGG | 0.543202 | 1.3:-55192253 | None:intergenic |
| GTTCCGTCGTCAGCTACTGT+TGG | 0.546475 | 1.3:+55193370 | MS.gene85599:CDS |
| GTCTAGAGCTCAATTAAGGC+AGG | 0.549454 | 1.3:+55189106 | MS.gene85599:CDS |
| ACCAGATTCTATAGCTTCAA+CGG | 0.551364 | 1.3:-55190901 | None:intergenic |
| CAACTAAGTTACCCGGATGA+TGG | 0.551553 | 1.3:+55192375 | MS.gene85599:CDS |
| TGCCTTGCAGGGACTAACAA+AGG | 0.551650 | 1.3:-55193203 | None:intergenic |
| AGCGAGCCGTCTTTCCTCAA+AGG | 0.553853 | 1.3:-55193431 | None:intergenic |
| ATAGGAATTGATGCTGTTGA+AGG | 0.558217 | 1.3:-55193289 | None:intergenic |
| AACAAGAAACACCATCATCC+GGG | 0.558335 | 1.3:-55192386 | None:intergenic |
| GTCGTCAGTTTCTATGAATG+TGG | 0.558887 | 1.3:+55193336 | MS.gene85599:CDS |
| GCTAAAGAAGAGAACAGAGC+TGG | 0.560308 | 1.3:+55190821 | MS.gene85599:CDS |
| GTTGAAGGTGTTGCAGGGAT+AGG | 0.565034 | 1.3:-55193274 | None:intergenic |
| AGCTGAGAAAGCACGTGGGT+TGG | 0.565102 | 1.3:+55191313 | MS.gene85599:CDS |
| GCCTTGCAGGGACTAACAAA+GGG | 0.569387 | 1.3:-55193202 | None:intergenic |
| TGAAAAGGTTGAGAAATGGT+TGG | 0.570979 | 1.3:+55191106 | MS.gene85599:CDS |
| AATCGATATAATGCTGGAAG+AGG | 0.572803 | 1.3:+55191269 | MS.gene85599:CDS |
| GCTGGAGCTCTGGAACCTGA+TGG | 0.572841 | 1.3:+55190539 | MS.gene85599:CDS |
| ACCTAGGATGTCAACCGGAG+GGG | 0.578104 | 1.3:+55192239 | MS.gene85599:CDS |
| TCAGTTTCATCTACAAGGGA+AGG | 0.579762 | 1.3:-55190010 | None:intergenic |
| CTAACCTGTCTAATGTGCAC+AGG | 0.580038 | 1.3:-55189185 | None:intergenic |
| TCGCAAGCCGAAACAACTTG+TGG | 0.580655 | 1.3:+55188846 | MS.gene85599:CDS |
| GAAGAGGACTGGATATTGCT+GGG | 0.580872 | 1.3:+55192993 | MS.gene85599:CDS |
| GCAGATTGGGCGCCTAAAGA+CGG | 0.586867 | 1.3:+55190209 | MS.gene85599:intron |
| GCCCTTTGTTAGTCCCTGCA+AGG | 0.587185 | 1.3:+55193201 | MS.gene85599:CDS |
| TAATGAAGAGTCTTGGCTTG+AGG | 0.588637 | 1.3:+55191136 | MS.gene85599:CDS |
| GACCTAGGATGTCAACCGGA+GGG | 0.588763 | 1.3:+55192238 | MS.gene85599:CDS |
| CAGAGGAGATTCTAATTCGT+AGG | 0.589431 | 1.3:-55193053 | None:intergenic |
| AGAAAGAGCAGGAACGTCGT+AGG | 0.593211 | 1.3:+55191929 | MS.gene85599:CDS |
| TAAATTACAGAGAATGCAGA+AGG | 0.595297 | 1.3:+55190398 | MS.gene85599:CDS |
| CACGCAATTGATGAAGTCCT+CGG | 0.598665 | 1.3:-55190652 | None:intergenic |
| TCAAAATGCTGGAAGCCTGA+AGG | 0.598820 | 1.3:+55189853 | MS.gene85599:CDS |
| TCTTGAAGTGTACCGAAGGA+AGG | 0.601109 | 1.3:+55189067 | MS.gene85599:CDS |
| GGTCCCTTCTTTACACTCTG+GGG | 0.603762 | 1.3:-55192219 | None:intergenic |
| AACAGCAGCCAGTTGCTGGA+TGG | 0.604245 | 1.3:-55190355 | None:intergenic |
| GGTCCTTCATCTCCTAAACT+GGG | 0.608441 | 1.3:-55190312 | None:intergenic |
| ATTGATGAAGTCCTCGGACA+AGG | 0.609342 | 1.3:-55190646 | None:intergenic |
| TGAAAAGTTGCCGAAAACAA+TGG | 0.611156 | 1.3:+55193165 | MS.gene85599:CDS |
| GTTTGATCAACTAAGTTACC+CGG | 0.612670 | 1.3:+55192368 | MS.gene85599:CDS |
| TGACGACGGAACTGGAGTCA+TGG | 0.615990 | 1.3:-55193320 | None:intergenic |
| TTCCCATGTGAAGCTCGAAG+AGG | 0.616466 | 1.3:+55192977 | MS.gene85599:intron |
| GGCGATTGCTGATTGTGAGG+CGG | 0.619455 | 1.3:+55189127 | MS.gene85599:CDS |
| AAGAATTCTTCCACAGCTGG+AGG | 0.620680 | 1.3:+55189886 | MS.gene85599:CDS |
| CTAAACTGGGATGAATTCCA+AGG | 0.627945 | 1.3:-55190299 | None:intergenic |
| GGGAAGGACTGTACTCTTTG+GGG | 0.629295 | 1.3:-55189994 | None:intergenic |
| AAAGAAGAGAACAGAGCTGG+AGG | 0.632727 | 1.3:+55190824 | MS.gene85599:CDS |
| CAAATCAGTTTCATCTACAA+GGG | 0.635801 | 1.3:-55190014 | None:intergenic |
| ATTACGACAAGAGAAAGAGC+AGG | 0.636761 | 1.3:+55191918 | MS.gene85599:CDS |
| GATACATTATTAGATGAGAG+GGG | 0.640613 | 1.3:-55193094 | None:intergenic |
| GCTAGTCGAAGAGTCTCCAT+GGG | 0.643018 | 1.3:+55192264 | MS.gene85599:CDS |
| AAGCGAGCTGAGAAAGCACG+TGG | 0.644154 | 1.3:+55191308 | MS.gene85599:CDS |
| AATTAGAATCTCCTCTGACA+AGG | 0.645997 | 1.3:+55193059 | MS.gene85599:CDS |
| AGAGTGTAAAGAAGGGACCT+AGG | 0.646906 | 1.3:+55192223 | MS.gene85599:CDS |
| AAGCCCCAGAGTGTAAAGAA+GGG | 0.647810 | 1.3:+55192216 | MS.gene85599:CDS |
| AGTGTCTTGAAGTGTACCGA+AGG | 0.648504 | 1.3:+55189063 | MS.gene85599:CDS |
| ACTGTTCAAGCACACATGCA+GGG | 0.651011 | 1.3:-55191028 | None:intergenic |
| ATGCTGTTGAAGGTGTTGCA+GGG | 0.651611 | 1.3:-55193279 | None:intergenic |
| AAAGAGAATTTAGAGTACAC+AGG | 0.652077 | 1.3:-55190242 | None:intergenic |
| TGACGACGGAACTGGAGTCA+CGG | 0.653598 | 1.3:-55193359 | None:intergenic |
| GCAGGCGATTGCTGATTGTG+AGG | 0.655426 | 1.3:+55189124 | MS.gene85599:CDS |
| AGTCGAAGAGTCTCCATGGG+AGG | 0.659640 | 1.3:+55192267 | MS.gene85599:CDS |
| TGAACCAAACACCTTGTCCG+AGG | 0.667411 | 1.3:+55190635 | MS.gene85599:CDS |
| AATTTGGGACGAAGTTGGCG+AGG | 0.668015 | 1.3:+55188998 | MS.gene85599:CDS |
| ACAAATGATAGCAGAACAGG+AGG | 0.669454 | 1.3:+55192164 | MS.gene85599:CDS |
| GGACCTAGGATGTCAACCGG+AGG | 0.683788 | 1.3:+55192237 | MS.gene85599:CDS |
| TTGGCTTGAGGAATATAACA+GGG | 0.700947 | 1.3:+55191148 | MS.gene85599:CDS |
| TAACTTAGTTGATCAAACTG+AGG | 0.721798 | 1.3:-55192363 | None:intergenic |
| ACTCCAACAGTAGCTGACGA+CGG | 0.729608 | 1.3:-55193373 | None:intergenic |
| TCCCTGCAAGGCAATGACTG+CGG | 0.734203 | 1.3:+55193213 | MS.gene85599:CDS |
| AGCGAGCTGAGAAAGCACGT+GGG | 0.746512 | 1.3:+55191309 | MS.gene85599:CDS |
| ACATTCATAGAAACTGACGA+CGG | 0.786540 | 1.3:-55193334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATATTTCTTTATTTTATA+CGG | + | chr1.3:55190704-55190723 | MS.gene85599:intron | 10.0% |
| !! | ACTTGTTTATTAGATAATTT+GGG | + | chr1.3:55188983-55189002 | MS.gene85599:intron | 15.0% |
| !! | AGAAAATTCAAAAAATAAAG+TGG | - | chr1.3:55190451-55190470 | None:intergenic | 15.0% |
| !! | CTATAACTAATTACTTATTA+TGG | + | chr1.3:55190169-55190188 | MS.gene85599:intron | 15.0% |
| !!! | AACAAAATTTTGAAGAAAAA+TGG | - | chr1.3:55191578-55191597 | None:intergenic | 15.0% |
| !!! | AACTTGTTTATTAGATAATT+TGG | + | chr1.3:55188982-55189001 | MS.gene85599:intron | 15.0% |
| !!! | AAGTATCATTTAATAAGTTT+TGG | - | chr1.3:55192113-55192132 | None:intergenic | 15.0% |
| !!! | CAAAACAAAATTTCTTTTTA+TGG | + | chr1.3:55189386-55189405 | MS.gene85599:intron | 15.0% |
| !! | ACCATTCCTATATATAAAAA+GGG | - | chr1.3:55191666-55191685 | None:intergenic | 20.0% |
| !! | AGCAAATTATGCATTAAATA+GGG | - | chr1.3:55189737-55189756 | None:intergenic | 20.0% |
| !! | AGTTGTAAATCATTTATGTT+TGG | + | chr1.3:55190490-55190509 | MS.gene85599:intron | 20.0% |
| !! | ATAAGAAGAGAAAATAAATG+TGG | - | chr1.3:55192635-55192654 | None:intergenic | 20.0% |
| !! | ATATTCTTAATATTCAGCAA+AGG | + | chr1.3:55191460-55191479 | MS.gene85599:intron | 20.0% |
| !! | TACCATTCCTATATATAAAA+AGG | - | chr1.3:55191667-55191686 | None:intergenic | 20.0% |
| !! | TAGCAAATTATGCATTAAAT+AGG | - | chr1.3:55189738-55189757 | None:intergenic | 20.0% |
| !! | TTAAGATCTATAAAAATACC+TGG | - | chr1.3:55191350-55191369 | None:intergenic | 20.0% |
| !!! | ACTTTTTCATGTGATTTAAT+TGG | + | chr1.3:55189357-55189376 | MS.gene85599:intron | 20.0% |
| !!! | CTATTGATTCAAAAGAAAAT+TGG | + | chr1.3:55192603-55192622 | MS.gene85599:intron | 20.0% |
| !!! | TCTATCTATTTTAATTTGCA+AGG | + | chr1.3:55190929-55190948 | MS.gene85599:intron | 20.0% |
| ! | AAAAAGATCATAGATCAATC+AGG | + | chr1.3:55192509-55192528 | MS.gene85599:intron | 25.0% |
| ! | AAAACTCTTATTACTTAGCA+AGG | - | chr1.3:55192465-55192484 | None:intergenic | 25.0% |
| ! | AAATATGTTCTGCTAGAATA+GGG | - | chr1.3:55189477-55189496 | None:intergenic | 25.0% |
| ! | AAATGCACTTCAAAATGAAA+AGG | + | chr1.3:55190072-55190091 | MS.gene85599:CDS | 25.0% |
| ! | AATAGTTCCAAAATCAAGAA+TGG | + | chr1.3:55191513-55191532 | MS.gene85599:intron | 25.0% |
| ! | ATAGTTCCAAAATCAAGAAT+GGG | + | chr1.3:55191514-55191533 | MS.gene85599:intron | 25.0% |
| ! | ATGATACATTATTAGATGAG+AGG | - | chr1.3:55193099-55193118 | None:intergenic | 25.0% |
| ! | ATTACTTAAGAGGAAAATGT+TGG | + | chr1.3:55192771-55192790 | MS.gene85599:intron | 25.0% |
| ! | CATTCCTATATATAAAAAGG+GGG | - | chr1.3:55191664-55191683 | None:intergenic | 25.0% |
| ! | CCATTCCTATATATAAAAAG+GGG | - | chr1.3:55191665-55191684 | None:intergenic | 25.0% |
| ! | CGAATCTAAAAAACCAAAAA+AGG | - | chr1.3:55191868-55191887 | None:intergenic | 25.0% |
| ! | TAATTGTTACGCATATGTTA+TGG | + | chr1.3:55191367-55191386 | MS.gene85599:intron | 25.0% |
| ! | TATGACTCTTTGTACAATTT+AGG | - | chr1.3:55192852-55192871 | None:intergenic | 25.0% |
| ! | TATGAGTATGACTGAAAAAA+TGG | - | chr1.3:55191203-55191222 | None:intergenic | 25.0% |
| ! | TCTAAAAAACCAAAAAAGGA+CGG | - | chr1.3:55191864-55191883 | None:intergenic | 25.0% |
| ! | TGAAAAAATGGAAGTCAAAA+TGG | - | chr1.3:55191191-55191210 | None:intergenic | 25.0% |
| ! | TGATACATTATTAGATGAGA+GGG | - | chr1.3:55193098-55193117 | None:intergenic | 25.0% |
| ! | TGATGAAACAGAAAAAATGA+TGG | - | chr1.3:55190116-55190135 | None:intergenic | 25.0% |
| ! | TGGGATAATTAACAATAGTT+TGG | + | chr1.3:55191533-55191552 | MS.gene85599:intron | 25.0% |
| !! | AATTATCCCATTCTTGATTT+TGG | - | chr1.3:55191523-55191542 | None:intergenic | 25.0% |
| !! | ACTTGTTAACTATTATTAGC+TGG | + | chr1.3:55191808-55191827 | MS.gene85599:intron | 25.0% |
| !! | TATTGAGTTAGAGTACTAAT+TGG | + | chr1.3:55189793-55189812 | MS.gene85599:intron | 25.0% |
| !! | TCCTCTTATTTCATTTGAAT+AGG | + | chr1.3:55191964-55191983 | MS.gene85599:intron | 25.0% |
| !! | TTTCTTTTGAATCAATAGTC+TGG | - | chr1.3:55192601-55192620 | None:intergenic | 25.0% |
| !!! | ATGGAAAGTTGATATGTAAT+TGG | + | chr1.3:55189624-55189643 | MS.gene85599:intron | 25.0% |
| !!! | CAATCTGCTCATATTTTAAA+GGG | - | chr1.3:55189451-55189470 | None:intergenic | 25.0% |
| !!! | TTTAATTTGCAAGGTTTTTC+TGG | + | chr1.3:55190938-55190957 | MS.gene85599:intron | 25.0% |
| AAAAACTATAGCATGGGAAA+AGG | + | chr1.3:55191701-55191720 | MS.gene85599:CDS | 30.0% | |
| AACTCAATAACATGTTCTCT+TGG | - | chr1.3:55189782-55189801 | None:intergenic | 30.0% | |
| AATCAGACACTTGTGAATAA+AGG | - | chr1.3:55191428-55191447 | None:intergenic | 30.0% | |
| ACAAATCAGTTTCATCTACA+AGG | - | chr1.3:55190018-55190037 | None:intergenic | 30.0% | |
| AGAACATATTTCACAATCCT+GGG | + | chr1.3:55189486-55189505 | MS.gene85599:intron | 30.0% | |
| AGAGATTGAATATTCCTTTG+AGG | + | chr1.3:55193417-55193436 | MS.gene85599:CDS | 30.0% | |
| AGTATATTGTCTCAGACATT+GGG | + | chr1.3:55192018-55192037 | MS.gene85599:intron | 30.0% | |
| CAAAGGAATATTCAATCTCT+TGG | - | chr1.3:55193417-55193436 | None:intergenic | 30.0% | |
| CAAATCAGTTTCATCTACAA+GGG | - | chr1.3:55190017-55190036 | None:intergenic | 30.0% | |
| CAAGTTGCTTGAGTATAATA+TGG | + | chr1.3:55190680-55190699 | MS.gene85599:intron | 30.0% | |
| CAGATAAATAAAATGTTGCC+TGG | - | chr1.3:55192053-55192072 | None:intergenic | 30.0% | |
| CGTTCTAACAAAATACCTAA+GGG | - | chr1.3:55189427-55189446 | None:intergenic | 30.0% | |
| CTCACTAATAACAGATCAAA+GGG | + | chr1.3:55189517-55189536 | MS.gene85599:intron | 30.0% | |
| CTTTCCATTTGAATTAGCAA+CGG | - | chr1.3:55189612-55189631 | None:intergenic | 30.0% | |
| GAAATATGTTCTGCTAGAAT+AGG | - | chr1.3:55189478-55189497 | None:intergenic | 30.0% | |
| GACTTCAAAAACTATAGCAT+GGG | + | chr1.3:55191695-55191714 | MS.gene85599:CDS | 30.0% | |
| GATACATTATTAGATGAGAG+GGG | - | chr1.3:55193097-55193116 | None:intergenic | 30.0% | |
| GATTTACAACTATCAACCAA+GGG | - | chr1.3:55190481-55190500 | None:intergenic | 30.0% | |
| GCCTATTCAAATGAAATAAG+AGG | - | chr1.3:55191968-55191987 | None:intergenic | 30.0% | |
| GTATCATTACTTACACTCTT+AGG | - | chr1.3:55190336-55190355 | None:intergenic | 30.0% | |
| GTTAAAATCCAGCAAAATGA+AGG | + | chr1.3:55190791-55190810 | MS.gene85599:CDS | 30.0% | |
| TAAATTACAGAGAATGCAGA+AGG | + | chr1.3:55190398-55190417 | MS.gene85599:CDS | 30.0% | |
| TAACTTAGTTGATCAAACTG+AGG | - | chr1.3:55192366-55192385 | None:intergenic | 30.0% | |
| TACACACAACATCTATTTGT+TGG | - | chr1.3:55192084-55192103 | None:intergenic | 30.0% | |
| TACTTGAAAAGGTTGAGAAA+TGG | + | chr1.3:55191102-55191121 | MS.gene85599:CDS | 30.0% | |
| TAGATACACTAGTCAAAAGT+TGG | - | chr1.3:55192726-55192745 | None:intergenic | 30.0% | |
| TAGTATATTGTCTCAGACAT+TGG | + | chr1.3:55192017-55192036 | MS.gene85599:intron | 30.0% | |
| TCGAAAAGACATACTTGAAA+AGG | + | chr1.3:55191091-55191110 | MS.gene85599:CDS | 30.0% | |
| TCGTTCTAACAAAATACCTA+AGG | - | chr1.3:55189428-55189447 | None:intergenic | 30.0% | |
| TGACTTCAAAAACTATAGCA+TGG | + | chr1.3:55191694-55191713 | MS.gene85599:CDS | 30.0% | |
| TGATTTACAACTATCAACCA+AGG | - | chr1.3:55190482-55190501 | None:intergenic | 30.0% | |
| TGTCTCCTTGTAATAGTATA+TGG | - | chr1.3:55189586-55189605 | None:intergenic | 30.0% | |
| TTCACATGGGAAAAAAAGAA+AGG | - | chr1.3:55192969-55192988 | None:intergenic | 30.0% | |
| TTGGACCATATACTATTACA+AGG | + | chr1.3:55189578-55189597 | MS.gene85599:intron | 30.0% | |
| ! | AAAGAGAATTTAGAGTACAC+AGG | - | chr1.3:55190245-55190264 | None:intergenic | 30.0% |
| ! | AAATGATACTTTTCTGTTGC+AGG | + | chr1.3:55192122-55192141 | MS.gene85599:intron | 30.0% |
| ! | AATATTCCTTTGAGGAAAGA+CGG | + | chr1.3:55193425-55193444 | MS.gene85599:CDS | 30.0% |
| ! | AATGTCTGAGACAATATACT+AGG | - | chr1.3:55192018-55192037 | None:intergenic | 30.0% |
| ! | AATTCTCTTTGTTTAGTGCT+CGG | + | chr1.3:55190255-55190274 | MS.gene85599:CDS | 30.0% |
| ! | AGTTAGAGTACTAATTGGAT+TGG | + | chr1.3:55189798-55189817 | MS.gene85599:intron | 30.0% |
| ! | ATAAGTCTAGAGCTCAATTA+AGG | + | chr1.3:55189102-55189121 | MS.gene85599:CDS | 30.0% |
| ! | ATGTCTGAGACAATATACTA+GGG | - | chr1.3:55192017-55192036 | None:intergenic | 30.0% |
| ! | CATTTAGTTCCAGAAATAGA+TGG | + | chr1.3:55190864-55190883 | MS.gene85599:CDS | 30.0% |
| ! | CCCCTTTTTATATATAGGAA+TGG | + | chr1.3:55191662-55191681 | MS.gene85599:intron | 30.0% |
| ! | GTTCATTTTGTTCATTTTCC+AGG | + | chr1.3:55191241-55191260 | MS.gene85599:intron | 30.0% |
| ! | TGATCCCCCTTTTTATATAT+AGG | + | chr1.3:55191657-55191676 | MS.gene85599:intron | 30.0% |
| ! | TGTTTGTTACCTGAATACAA+TGG | + | chr1.3:55189247-55189266 | MS.gene85599:intron | 30.0% |
| ! | TTCAGTTATTTCATCTTCTG+AGG | - | chr1.3:55190619-55190638 | None:intergenic | 30.0% |
| !! | ACAGAAAAAATGATGGATAG+TGG | - | chr1.3:55190109-55190128 | None:intergenic | 30.0% |
| !! | CAAATCTTCAAGTTTTCTCA+GGG | - | chr1.3:55190041-55190060 | None:intergenic | 30.0% |
| !! | GCAATCTGCTCATATTTTAA+AGG | - | chr1.3:55189452-55189471 | None:intergenic | 30.0% |
| !! | GTTAGAGTTCTAAATCCATA+TGG | - | chr1.3:55192934-55192953 | None:intergenic | 30.0% |
| !! | TGCTTTTGGTTATACTTTTG+TGG | + | chr1.3:55192430-55192449 | MS.gene85599:intron | 30.0% |
| !! | TTGTTAAGTGCCATTGTTTT+CGG | - | chr1.3:55193178-55193197 | None:intergenic | 30.0% |
| !!! | AAAATGATTCCGTCCTTTTT+TGG | + | chr1.3:55191852-55191871 | MS.gene85599:intron | 30.0% |
| !!! | ATGATCTTTTTGAGTCAAAC+AGG | - | chr1.3:55192500-55192519 | None:intergenic | 30.0% |
| AAACAAGAAACACCATCATC+CGG | - | chr1.3:55192390-55192409 | None:intergenic | 35.0% | |
| AAATAATGGTGTAGATGGCT+TGG | - | chr1.3:55191626-55191645 | None:intergenic | 35.0% | |
| AAGAGATCCACAAGTTGTTT+CGG | - | chr1.3:55188856-55188875 | None:intergenic | 35.0% | |
| AATCGATATAATGCTGGAAG+AGG | + | chr1.3:55191269-55191288 | MS.gene85599:CDS | 35.0% | |
| AATTAGAATCTCCTCTGACA+AGG | + | chr1.3:55193059-55193078 | MS.gene85599:CDS | 35.0% | |
| AATTGTTTACCACGTGAATG+TGG | - | chr1.3:55189560-55189579 | None:intergenic | 35.0% | |
| ACATTCACGTGGTAAACAAT+TGG | + | chr1.3:55189559-55189578 | MS.gene85599:intron | 35.0% | |
| ACATTCATAGAAACTGACGA+CGG | - | chr1.3:55193337-55193356 | None:intergenic | 35.0% | |
| ACCAGATTCTATAGCTTCAA+CGG | - | chr1.3:55190904-55190923 | None:intergenic | 35.0% | |
| ACTACTTAAACAATGCCTTG+AGG | - | chr1.3:55189318-55189337 | None:intergenic | 35.0% | |
| AGCCTCTCAATGGAAATTTA+TGG | + | chr1.3:55189971-55189990 | MS.gene85599:CDS | 35.0% | |
| AGTGAATGTGTGAATGAGTT+GGG | - | chr1.3:55192891-55192910 | None:intergenic | 35.0% | |
| ATAGCATGGGAAAAGGAAAA+AGG | + | chr1.3:55191708-55191727 | MS.gene85599:CDS | 35.0% | |
| ATAGGAATTGATGCTGTTGA+AGG | - | chr1.3:55193292-55193311 | None:intergenic | 35.0% | |
| ATCTCTTCTGTATGAACTTC+AGG | + | chr1.3:55188869-55188888 | MS.gene85599:CDS | 35.0% | |
| ATTCTTGAAACAATGCCCTT+AGG | + | chr1.3:55189409-55189428 | MS.gene85599:intron | 35.0% | |
| ATTGCCGTTGCTAATTCAAA+TGG | + | chr1.3:55189605-55189624 | MS.gene85599:intron | 35.0% | |
| CAAGTTAAAGAGGAAGCTTT+GGG | + | chr1.3:55191068-55191087 | MS.gene85599:CDS | 35.0% | |
| CAGAACATATTTCACAATCC+TGG | + | chr1.3:55189485-55189504 | MS.gene85599:intron | 35.0% | |
| CTACTTAAACAATGCCTTGA+GGG | - | chr1.3:55189317-55189336 | None:intergenic | 35.0% | |
| CTGCTGTTATACAACAACTT+CGG | + | chr1.3:55190370-55190389 | MS.gene85599:CDS | 35.0% | |
| GAATATTCAATCTCTTGGAC+TGG | - | chr1.3:55193412-55193431 | None:intergenic | 35.0% | |
| GATGACAATCGATATAATGC+TGG | + | chr1.3:55191263-55191282 | MS.gene85599:CDS | 35.0% | |
| GATTACAAATGAAGTCACAG+TGG | - | chr1.3:55191601-55191620 | None:intergenic | 35.0% | |
| GCATGAGTGAATTACTTAAG+AGG | + | chr1.3:55192761-55192780 | MS.gene85599:intron | 35.0% | |
| GCTCACTAATAACAGATCAA+AGG | + | chr1.3:55189516-55189535 | MS.gene85599:intron | 35.0% | |
| GGTTTCGAATTCACATATGA+TGG | + | chr1.3:55191729-55191748 | MS.gene85599:CDS | 35.0% | |
| GTTTGATCAACTAAGTTACC+CGG | + | chr1.3:55192368-55192387 | MS.gene85599:CDS | 35.0% | |
| TCACAACCATGCGTAAATAA+TGG | - | chr1.3:55191640-55191659 | None:intergenic | 35.0% | |
| TCTACACCATTATTTACGCA+TGG | + | chr1.3:55191631-55191650 | MS.gene85599:intron | 35.0% | |
| TGAAAAGGTTGAGAAATGGT+TGG | + | chr1.3:55191106-55191125 | MS.gene85599:CDS | 35.0% | |
| TGAAAAGTTGCCGAAAACAA+TGG | + | chr1.3:55193165-55193184 | MS.gene85599:CDS | 35.0% | |
| TGCGTAAATAATGGTGTAGA+TGG | - | chr1.3:55191631-55191650 | None:intergenic | 35.0% | |
| TGCTGTTATACAACAACTTC+GGG | + | chr1.3:55190371-55190390 | MS.gene85599:CDS | 35.0% | |
| ! | AGGTAGTTTAACTCTGCTTT+TGG | + | chr1.3:55192416-55192435 | MS.gene85599:intron | 35.0% |
| ! | CAAAGCTTCCTCTTTAACTT+GGG | - | chr1.3:55191069-55191088 | None:intergenic | 35.0% |
| ! | CATTATATCGATTGTCATCC+TGG | - | chr1.3:55191262-55191281 | None:intergenic | 35.0% |
| ! | GAATGAGTAGCTTTTGAATC+AGG | - | chr1.3:55192315-55192334 | None:intergenic | 35.0% |
| ! | GAATTTTCTGTTCTTTCCCT+TGG | + | chr1.3:55190462-55190481 | MS.gene85599:intron | 35.0% |
| ! | GGAGATGAAAAAGCATAAGT+TGG | + | chr1.3:55189907-55189926 | MS.gene85599:CDS | 35.0% |
| ! | GGTGTTTCTTGTTTATCATC+AGG | + | chr1.3:55192396-55192415 | MS.gene85599:CDS | 35.0% |
| ! | GTAGCTTTTGAATCAGGTTT+TGG | - | chr1.3:55192309-55192328 | None:intergenic | 35.0% |
| ! | TAGATAATTTGGGACGAAGT+TGG | + | chr1.3:55188993-55189012 | MS.gene85599:intron | 35.0% |
| ! | TCGTTCTTTTCATGCAGATT+GGG | + | chr1.3:55190196-55190215 | MS.gene85599:intron | 35.0% |
| ! | TGAAAAAGCATAAGTTGGAG+CGG | + | chr1.3:55189912-55189931 | MS.gene85599:CDS | 35.0% |
| ! | TTCGTTCTTTTCATGCAGAT+TGG | + | chr1.3:55190195-55190214 | MS.gene85599:intron | 35.0% |
| ! | TTGGCTTGAGGAATATAACA+GGG | + | chr1.3:55191148-55191167 | MS.gene85599:CDS | 35.0% |
| !! | AAGAAGTATTAATGCCATGC+AGG | + | chr1.3:55190740-55190759 | MS.gene85599:intron | 35.0% |
| !! | GCAAATCTTCAAGTTTTCTC+AGG | - | chr1.3:55190042-55190061 | None:intergenic | 35.0% |
| AACAAGAAACACCATCATCC+GGG | - | chr1.3:55192389-55192408 | None:intergenic | 40.0% | |
| AACAGCATTCTGTCTCTATC+AGG | - | chr1.3:55189029-55189048 | None:intergenic | 40.0% | |
| AACATCTGCTGCTCTTCAAT+AGG | - | chr1.3:55190570-55190589 | None:intergenic | 40.0% | |
| AACTTTAAGCAGACAGTCCT+TGG | + | chr1.3:55190282-55190301 | MS.gene85599:CDS | 40.0% | |
| AAGTATTAATGCCATGCAGG+TGG | + | chr1.3:55190743-55190762 | MS.gene85599:intron | 40.0% | |
| ACAAATGATAGCAGAACAGG+AGG | + | chr1.3:55192164-55192183 | MS.gene85599:CDS | 40.0% | |
| ACGCAACATTGATGTGGATA+TGG | - | chr1.3:55189702-55189721 | None:intergenic | 40.0% | |
| AGATCTTGCAACAACAATGC+TGG | + | chr1.3:55190521-55190540 | MS.gene85599:CDS | 40.0% | |
| ATTACGACAAGAGAAAGAGC+AGG | + | chr1.3:55191918-55191937 | MS.gene85599:CDS | 40.0% | |
| CACTTTGTCAACCTTTCTCA+CGG | - | chr1.3:55192343-55192362 | None:intergenic | 40.0% | |
| CAGAGGAGATTCTAATTCGT+AGG | - | chr1.3:55193056-55193075 | None:intergenic | 40.0% | |
| CAGCATGTAATGAAGAGTCT+TGG | + | chr1.3:55191129-55191148 | MS.gene85599:CDS | 40.0% | |
| CATAGATCAATCAGGTCTCT+TGG | + | chr1.3:55192517-55192536 | MS.gene85599:intron | 40.0% | |
| CCAAAGCTTCCTCTTTAACT+TGG | - | chr1.3:55191070-55191089 | None:intergenic | 40.0% | |
| CCAAGTTAAAGAGGAAGCTT+TGG | + | chr1.3:55191067-55191086 | MS.gene85599:CDS | 40.0% | |
| CTAAACTGGGATGAATTCCA+AGG | - | chr1.3:55190302-55190321 | None:intergenic | 40.0% | |
| CTTCAATAGGTGTATCCATC+AGG | - | chr1.3:55190557-55190576 | None:intergenic | 40.0% | |
| CTTGGAATTCATCCCAGTTT+AGG | + | chr1.3:55190300-55190319 | MS.gene85599:CDS | 40.0% | |
| GAGTGAATGTGTGAATGAGT+TGG | - | chr1.3:55192892-55192911 | None:intergenic | 40.0% | |
| GCACTTCTTCCATTGTATTC+AGG | - | chr1.3:55189259-55189278 | None:intergenic | 40.0% | |
| GGAGTCATGGTCATATTCAT+AGG | - | chr1.3:55193310-55193329 | None:intergenic | 40.0% | |
| GGCCATAAATTTCCATTGAG+AGG | - | chr1.3:55189976-55189995 | None:intergenic | 40.0% | |
| GTCGTCAGTTTCTATGAATG+TGG | + | chr1.3:55193336-55193355 | MS.gene85599:CDS | 40.0% | |
| GTCTTCCTCAATGACTGATA+TGG | - | chr1.3:55192797-55192816 | None:intergenic | 40.0% | |
| GTTACTAACAAGTTCCCTCA+AGG | + | chr1.3:55189300-55189319 | MS.gene85599:intron | 40.0% | |
| TAATGATACCATCCAGCAAC+TGG | + | chr1.3:55190347-55190366 | MS.gene85599:CDS | 40.0% | |
| TACAGTGAGTTCGCTATCTA+TGG | - | chr1.3:55189669-55189688 | None:intergenic | 40.0% | |
| TATCAGACGCAACATTGATG+TGG | - | chr1.3:55189708-55189727 | None:intergenic | 40.0% | |
| TCAGTTTCATCTACAAGGGA+AGG | - | chr1.3:55190013-55190032 | None:intergenic | 40.0% | |
| TTAGATGAGAGGGGAGAAAA+AGG | - | chr1.3:55193088-55193107 | None:intergenic | 40.0% | |
| TTCTAGTCCGATCAAAATGC+TGG | + | chr1.3:55189842-55189861 | MS.gene85599:intron | 40.0% | |
| TTCTTGCATACTCTTCCTTC+AGG | - | chr1.3:55189871-55189890 | None:intergenic | 40.0% | |
| ! | ATAGGAATAGGCACTGTCTT+TGG | - | chr1.3:55193259-55193278 | None:intergenic | 40.0% |
| ! | CTTGGCTTGAGGAATATAAC+AGG | + | chr1.3:55191147-55191166 | MS.gene85599:CDS | 40.0% |
| ! | GCATTGTTGTTGCAAGATCT+TGG | - | chr1.3:55190521-55190540 | None:intergenic | 40.0% |
| ! | GTTTTCGGCAACTTTTCACT+CGG | - | chr1.3:55193163-55193182 | None:intergenic | 40.0% |
| ! | TAATGAAGAGTCTTGGCTTG+AGG | + | chr1.3:55191136-55191155 | MS.gene85599:CDS | 40.0% |
| !! | GGGTTGGTTAACAAAATTCC+AGG | + | chr1.3:55191329-55191348 | MS.gene85599:CDS | 40.0% |
| AAAGAAGAGAACAGAGCTGG+AGG | + | chr1.3:55190824-55190843 | MS.gene85599:CDS | 45.0% | |
| AAAGCCCCAGAGTGTAAAGA+AGG | + | chr1.3:55192215-55192234 | MS.gene85599:CDS | 45.0% | |
| AACTGTTCAAGCACACATGC+AGG | - | chr1.3:55191032-55191051 | None:intergenic | 45.0% | |
| AAGAATTCTTCCACAGCTGG+AGG | + | chr1.3:55189886-55189905 | MS.gene85599:CDS | 45.0% | |
| AAGCCCCAGAGTGTAAAGAA+GGG | + | chr1.3:55192216-55192235 | MS.gene85599:CDS | 45.0% | |
| AAGGGAAGGACTGTACTCTT+TGG | - | chr1.3:55189999-55190018 | None:intergenic | 45.0% | |
| ACTGTTCAAGCACACATGCA+GGG | - | chr1.3:55191031-55191050 | None:intergenic | 45.0% | |
| AGAGTGTAAAGAAGGGACCT+AGG | + | chr1.3:55192223-55192242 | MS.gene85599:CDS | 45.0% | |
| AGGGAAGGACTGTACTCTTT+GGG | - | chr1.3:55189998-55190017 | None:intergenic | 45.0% | |
| AGGTCCCTTCTTTACACTCT+GGG | - | chr1.3:55192223-55192242 | None:intergenic | 45.0% | |
| AGGTCCTTCATCTCCTAAAC+TGG | - | chr1.3:55190316-55190335 | None:intergenic | 45.0% | |
| AGTGTCTTGAAGTGTACCGA+AGG | + | chr1.3:55189063-55189082 | MS.gene85599:CDS | 45.0% | |
| ATAGAAACTGACGACGGAAC+TGG | - | chr1.3:55193331-55193350 | None:intergenic | 45.0% | |
| ATTAGTGAGCTATCTCTCCC+AGG | - | chr1.3:55189506-55189525 | None:intergenic | 45.0% | |
| ATTGATGAAGTCCTCGGACA+AGG | - | chr1.3:55190649-55190668 | None:intergenic | 45.0% | |
| CAACTAAGTTACCCGGATGA+TGG | + | chr1.3:55192375-55192394 | MS.gene85599:CDS | 45.0% | |
| CAATTCCTGCATCAAGGAAC+AGG | - | chr1.3:55191004-55191023 | None:intergenic | 45.0% | |
| CACGCAATTGATGAAGTCCT+CGG | - | chr1.3:55190655-55190674 | None:intergenic | 45.0% | |
| CATCCCAGTTTAGGAGATGA+AGG | + | chr1.3:55190309-55190328 | MS.gene85599:CDS | 45.0% | |
| CTAACCTGTCTAATGTGCAC+AGG | - | chr1.3:55189188-55189207 | None:intergenic | 45.0% | |
| GAAAAAGGTTGCCTTGTCAG+AGG | - | chr1.3:55193073-55193092 | None:intergenic | 45.0% | |
| GAAGAGGACTGGATATTGCT+GGG | + | chr1.3:55192993-55193012 | MS.gene85599:CDS | 45.0% | |
| GACATTGGGTTTCGTAATCC+AGG | + | chr1.3:55192032-55192051 | MS.gene85599:intron | 45.0% | |
| GCACATTCTCGTGTACCATA+TGG | + | chr1.3:55192916-55192935 | MS.gene85599:intron | 45.0% | |
| GCAGATTCAAAGCCTCTCAA+TGG | + | chr1.3:55189961-55189980 | MS.gene85599:CDS | 45.0% | |
| GCAGCTATCTGTTCTGCAAT+GGG | + | chr1.3:55189155-55189174 | MS.gene85599:CDS | 45.0% | |
| GCCGTTGAAGCTATAGAATC+TGG | + | chr1.3:55190900-55190919 | MS.gene85599:CDS | 45.0% | |
| GCTAAAGAAGAGAACAGAGC+TGG | + | chr1.3:55190821-55190840 | MS.gene85599:CDS | 45.0% | |
| GGGACAAATGATAGCAGAAC+AGG | + | chr1.3:55192161-55192180 | MS.gene85599:CDS | 45.0% | |
| GGTCCTTCATCTCCTAAACT+GGG | - | chr1.3:55190315-55190334 | None:intergenic | 45.0% | |
| GTTCCTTGATGCAGGAATTG+TGG | + | chr1.3:55191004-55191023 | MS.gene85599:intron | 45.0% | |
| GTTGGCCATATCAGTCATTG+AGG | + | chr1.3:55192789-55192808 | MS.gene85599:intron | 45.0% | |
| GTTTGTGGCTAAAGTGGCAA+GGG | + | chr1.3:55192539-55192558 | MS.gene85599:intron | 45.0% | |
| TAGGTCCCTTCTTTACACTC+TGG | - | chr1.3:55192224-55192243 | None:intergenic | 45.0% | |
| TATTAATGCCATGCAGGTGG+AGG | + | chr1.3:55190746-55190765 | MS.gene85599:intron | 45.0% | |
| TCAAAATGCTGGAAGCCTGA+AGG | + | chr1.3:55189853-55189872 | MS.gene85599:CDS | 45.0% | |
| TCGACTGCACCATCTATTTC+TGG | - | chr1.3:55190876-55190895 | None:intergenic | 45.0% | |
| TCGATTCATCCACATTCACG+TGG | + | chr1.3:55189548-55189567 | MS.gene85599:intron | 45.0% | |
| TCTTGAAGTGTACCGAAGGA+AGG | + | chr1.3:55189067-55189086 | MS.gene85599:CDS | 45.0% | |
| TGCAAGAATTCTTCCACAGC+TGG | + | chr1.3:55189883-55189902 | MS.gene85599:CDS | 45.0% | |
| TGCAGCTATCTGTTCTGCAA+TGG | + | chr1.3:55189154-55189173 | MS.gene85599:CDS | 45.0% | |
| TTCACTCATGCTCATGTCAG+AGG | - | chr1.3:55192752-55192771 | None:intergenic | 45.0% | |
| TTTGTCCCTGAAGCTTCTTC+AGG | - | chr1.3:55192149-55192168 | None:intergenic | 45.0% | |
| TTTGTGGCTAAAGTGGCAAG+GGG | + | chr1.3:55192540-55192559 | MS.gene85599:intron | 45.0% | |
| ! | AAGTTGTTTCGGCTTGCGAA+AGG | - | chr1.3:55188845-55188864 | None:intergenic | 45.0% |
| ! | AGTTGTTTCGGCTTGCGAAA+GGG | - | chr1.3:55188844-55188863 | None:intergenic | 45.0% |
| ! | CAATCAGGTCTCTTGGTTTG+TGG | + | chr1.3:55192524-55192543 | MS.gene85599:intron | 45.0% |
| ! | CACAAGCTCCTTCATTTTGC+TGG | - | chr1.3:55190802-55190821 | None:intergenic | 45.0% |
| ! | GTCTAGAGCTCAATTAAGGC+AGG | + | chr1.3:55189106-55189125 | MS.gene85599:CDS | 45.0% |
| ! | TTTTTCATCTCCTCCAGCTG+TGG | - | chr1.3:55189899-55189918 | None:intergenic | 45.0% |
| !! | ATGCTGTTGAAGGTGTTGCA+GGG | - | chr1.3:55193282-55193301 | None:intergenic | 45.0% |
| !! | CAGGCTTCCAGCATTTTGAT+CGG | - | chr1.3:55189852-55189871 | None:intergenic | 45.0% |
| !! | CCTGCAAAAAAGCACTCACT+TGG | + | chr1.3:55193019-55193038 | MS.gene85599:CDS | 45.0% |
| !! | CTCTTGGTTTGTGGCTAAAG+TGG | + | chr1.3:55192533-55192552 | MS.gene85599:intron | 45.0% |
| !! | TTACACTCTGGGGCTTTGAT+GGG | - | chr1.3:55192212-55192231 | None:intergenic | 45.0% |
| !! | TTTACACTCTGGGGCTTTGA+TGG | - | chr1.3:55192213-55192232 | None:intergenic | 45.0% |
| !!! | CCAAGTGAGTGCTTTTTTGC+AGG | - | chr1.3:55193022-55193041 | None:intergenic | 45.0% |
| AAGGGACCTAGGATGTCAAC+CGG | + | chr1.3:55192234-55192253 | MS.gene85599:CDS | 50.0% | |
| ACTCCAACAGTAGCTGACGA+CGG | - | chr1.3:55193376-55193395 | None:intergenic | 50.0% | |
| AGAAAGAGCAGGAACGTCGT+AGG | + | chr1.3:55191929-55191948 | MS.gene85599:CDS | 50.0% | |
| AGCTAGTCGAAGAGTCTCCA+TGG | + | chr1.3:55192263-55192282 | MS.gene85599:CDS | 50.0% | |
| AGTCCTCTTCGAGCTTCACA+TGG | - | chr1.3:55192983-55193002 | None:intergenic | 50.0% | |
| ATGTGAAGCTCGAAGAGGAC+TGG | + | chr1.3:55192982-55193001 | MS.gene85599:intron | 50.0% | |
| CAACAACAATGCTGGAGCTC+TGG | + | chr1.3:55190529-55190548 | MS.gene85599:CDS | 50.0% | |
| CAGGACCTGAAGAAGCTTCA+GGG | + | chr1.3:55192141-55192160 | MS.gene85599:intron | 50.0% | |
| CCAGGTTGCCCAAGTTAAAG+AGG | + | chr1.3:55191058-55191077 | MS.gene85599:CDS | 50.0% | |
| CGAAGAGGACTGGATATTGC+TGG | + | chr1.3:55192992-55193011 | MS.gene85599:CDS | 50.0% | |
| GCCTTGCAGGGACTAACAAA+GGG | - | chr1.3:55193205-55193224 | None:intergenic | 50.0% | |
| GCTAGTCGAAGAGTCTCCAT+GGG | + | chr1.3:55192264-55192283 | MS.gene85599:CDS | 50.0% | |
| GGGAAGGACTGTACTCTTTG+GGG | - | chr1.3:55189997-55190016 | None:intergenic | 50.0% | |
| GGTCCACAATTCCTGCATCA+AGG | - | chr1.3:55191010-55191029 | None:intergenic | 50.0% | |
| GGTCCCTTCTTTACACTCTG+GGG | - | chr1.3:55192222-55192241 | None:intergenic | 50.0% | |
| GGTGCTCTTGAACCGTCTTT+AGG | - | chr1.3:55190224-55190243 | None:intergenic | 50.0% | |
| GGTTTGTGGCTAAAGTGGCA+AGG | + | chr1.3:55192538-55192557 | MS.gene85599:intron | 50.0% | |
| GTATAACAGCAGCCAGTTGC+TGG | - | chr1.3:55190362-55190381 | None:intergenic | 50.0% | |
| GTCCTCTTCGAGCTTCACAT+GGG | - | chr1.3:55192982-55193001 | None:intergenic | 50.0% | |
| TCATTCACGTGCCGTGAGAA+AGG | + | chr1.3:55192329-55192348 | MS.gene85599:CDS | 50.0% | |
| TCGCAAGCCGAAACAACTTG+TGG | + | chr1.3:55188846-55188865 | MS.gene85599:CDS | 50.0% | |
| TGAACCAAACACCTTGTCCG+AGG | + | chr1.3:55190635-55190654 | MS.gene85599:CDS | 50.0% | |
| TGCCTTGCAGGGACTAACAA+AGG | - | chr1.3:55193206-55193225 | None:intergenic | 50.0% | |
| TTCCCATGTGAAGCTCGAAG+AGG | + | chr1.3:55192977-55192996 | MS.gene85599:intron | 50.0% | |
| ! | AAGTCCTCGGACAAGGTGTT+TGG | - | chr1.3:55190642-55190661 | None:intergenic | 50.0% |
| ! | AATTTGGGACGAAGTTGGCG+AGG | + | chr1.3:55188998-55189017 | MS.gene85599:CDS | 50.0% |
| ! | AGGTGGAGGTCGAAGTATCT+AGG | + | chr1.3:55190760-55190779 | MS.gene85599:intron | 50.0% |
| ! | GGTGGGGATAGGTTTTCTCT+AGG | + | chr1.3:55192574-55192593 | MS.gene85599:intron | 50.0% |
| ! | GGTGTTGCAGGGATAGGAAT+AGG | - | chr1.3:55193271-55193290 | None:intergenic | 50.0% |
| ! | GTTGTTTCGGCTTGCGAAAG+GGG | - | chr1.3:55188843-55188862 | None:intergenic | 50.0% |
| ! | TGCGAAAGGGGATCGTTTTG+AGG | - | chr1.3:55188831-55188850 | None:intergenic | 50.0% |
| !! | CCTCTTTAACTTGGGCAACC+TGG | - | chr1.3:55191061-55191080 | None:intergenic | 50.0% |
| !! | GATGCTGTTGAAGGTGTTGC+AGG | - | chr1.3:55193283-55193302 | None:intergenic | 50.0% |
| !! | GCAGAACAGGAGGCACTATA+TGG | + | chr1.3:55192174-55192193 | MS.gene85599:CDS | 50.0% |
| !! | GTTGAAGGTGTTGCAGGGAT+AGG | - | chr1.3:55193277-55193296 | None:intergenic | 50.0% |
| !! | TTGAAGCATTGCTCCTCCCA+TGG | - | chr1.3:55192283-55192302 | None:intergenic | 50.0% |
| AACAGCAGCCAGTTGCTGGA+TGG | - | chr1.3:55190358-55190377 | None:intergenic | 55.0% | |
| ACAGTAGCTGACGACGGAAC+TGG | - | chr1.3:55193370-55193389 | None:intergenic | 55.0% | |
| ACCTAGGATGTCAACCGGAG+GGG | + | chr1.3:55192239-55192258 | MS.gene85599:CDS | 55.0% | |
| AGCGAGCCGTCTTTCCTCAA+AGG | - | chr1.3:55193434-55193453 | None:intergenic | 55.0% | |
| AGTCGAAGAGTCTCCATGGG+AGG | + | chr1.3:55192267-55192286 | MS.gene85599:CDS | 55.0% | |
| AGTGGCAAGGGGTTGTTTGC+TGG | + | chr1.3:55192551-55192570 | MS.gene85599:intron | 55.0% | |
| CTCTGCCTGTTCCTTGATGC+AGG | + | chr1.3:55190996-55191015 | MS.gene85599:intron | 55.0% | |
| GACCTAGGATGTCAACCGGA+GGG | + | chr1.3:55192238-55192257 | MS.gene85599:CDS | 55.0% | |
| GCAGATTGGGCGCCTAAAGA+CGG | + | chr1.3:55190209-55190228 | MS.gene85599:intron | 55.0% | |
| GCAGGACCTGAAGAAGCTTC+AGG | + | chr1.3:55192140-55192159 | MS.gene85599:intron | 55.0% | |
| GCCCTTTGTTAGTCCCTGCA+AGG | + | chr1.3:55193201-55193220 | MS.gene85599:CDS | 55.0% | |
| GCGACCTGTGCACATTAGAC+AGG | + | chr1.3:55189181-55189200 | MS.gene85599:CDS | 55.0% | |
| GCTTGAACAGTTTGAGCGCC+AGG | + | chr1.3:55191040-55191059 | MS.gene85599:CDS | 55.0% | |
| GTACCGAAGGAAGGTCGATC+AGG | + | chr1.3:55189076-55189095 | MS.gene85599:CDS | 55.0% | |
| GTGGCAAGGGGTTGTTTGCT+GGG | + | chr1.3:55192552-55192571 | MS.gene85599:intron | 55.0% | |
| GTTCCGTCGTCAGCTACTGT+TGG | + | chr1.3:55193370-55193389 | MS.gene85599:CDS | 55.0% | |
| TACTTCGACCTCCACCTGCA+TGG | - | chr1.3:55190757-55190776 | None:intergenic | 55.0% | |
| TCCCTGCAAGGCAATGACTG+CGG | + | chr1.3:55193213-55193232 | MS.gene85599:CDS | 55.0% | |
| TCGCCTGATCGACCTTCCTT+CGG | - | chr1.3:55189082-55189101 | None:intergenic | 55.0% | |
| TGACGACGGAACTGGAGTCA+CGG | - | chr1.3:55193323-55193342 | None:intergenic | 55.0% | |
| TGACGACGGAACTGGAGTCA+TGG | - | chr1.3:55193323-55193342 | None:intergenic | 55.0% | |
| ! | AAGCGAGCTGAGAAAGCACG+TGG | + | chr1.3:55191308-55191327 | MS.gene85599:CDS | 55.0% |
| ! | AAGGGGTTGTTTGCTGGGGT+GGG | + | chr1.3:55192557-55192576 | MS.gene85599:intron | 55.0% |
| ! | AGCGAGCTGAGAAAGCACGT+GGG | + | chr1.3:55191309-55191328 | MS.gene85599:CDS | 55.0% |
| ! | AGCTGAGAAAGCACGTGGGT+TGG | + | chr1.3:55191313-55191332 | MS.gene85599:CDS | 55.0% |
| ! | GCAGGCGATTGCTGATTGTG+AGG | + | chr1.3:55189124-55189143 | MS.gene85599:CDS | 55.0% |
| ! | GGCGATTGCTGATTGTGAGG+CGG | + | chr1.3:55189127-55189146 | MS.gene85599:CDS | 55.0% |
| ! | TGGCAAGGGGTTGTTTGCTG+GGG | + | chr1.3:55192553-55192572 | MS.gene85599:intron | 55.0% |
| ! | TTGTTTGCTGGGGTGGGGAT+AGG | + | chr1.3:55192563-55192582 | MS.gene85599:intron | 55.0% |
| AGCAGGAACGTCGTAGGCAG+CGG | + | chr1.3:55191935-55191954 | MS.gene85599:CDS | 60.0% | |
| AGCCGCAGTCATTGCCTTGC+AGG | - | chr1.3:55193218-55193237 | None:intergenic | 60.0% | |
| GCCGCAGTCATTGCCTTGCA+GGG | - | chr1.3:55193217-55193236 | None:intergenic | 60.0% | |
| GGACCTAGGATGTCAACCGG+AGG | + | chr1.3:55192237-55192256 | MS.gene85599:CDS | 60.0% | |
| ! | AGGGGTTGTTTGCTGGGGTG+GGG | + | chr1.3:55192558-55192577 | MS.gene85599:intron | 60.0% |
| ! | CAAGGGGTTGTTTGCTGGGG+TGG | + | chr1.3:55192556-55192575 | MS.gene85599:intron | 60.0% |
| ! | TCTTCGACTAGCTGCCCCTC+CGG | - | chr1.3:55192256-55192275 | None:intergenic | 60.0% |
| !! | CTCTGGGGCTTTGATGGGCT+TGG | - | chr1.3:55192207-55192226 | None:intergenic | 60.0% |
| !! | GCTGGAGCTCTGGAACCTGA+TGG | + | chr1.3:55190539-55190558 | MS.gene85599:CDS | 60.0% |
| GCAGGAACGTCGTAGGCAGC+GGG | + | chr1.3:55191936-55191955 | MS.gene85599:CDS | 65.0% | |
| GCCCCTCCGGTTGACATCCT+AGG | - | chr1.3:55192243-55192262 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 55188819 | 55193471 | 55188819 | ID=MS.gene85599 |
| chr1.3 | mRNA | 55188819 | 55193471 | 55188819 | ID=MS.gene85599.t1;Parent=MS.gene85599 |
| chr1.3 | exon | 55188819 | 55188890 | 55188819 | ID=MS.gene85599.t1.exon1;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55188819 | 55188890 | 55188819 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55188996 | 55189202 | 55188996 | ID=MS.gene85599.t1.exon2;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55188996 | 55189202 | 55188996 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55189848 | 55190093 | 55189848 | ID=MS.gene85599.t1.exon3;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55189848 | 55190093 | 55189848 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55190213 | 55190419 | 55190213 | ID=MS.gene85599.t1.exon4;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55190213 | 55190419 | 55190213 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55190516 | 55190671 | 55190516 | ID=MS.gene85599.t1.exon5;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55190516 | 55190671 | 55190516 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55190762 | 55190921 | 55190762 | ID=MS.gene85599.t1.exon6;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55190762 | 55190921 | 55190762 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55191018 | 55191169 | 55191018 | ID=MS.gene85599.t1.exon7;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55191018 | 55191169 | 55191018 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55191263 | 55191350 | 55191263 | ID=MS.gene85599.t1.exon8;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55191263 | 55191350 | 55191263 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55191679 | 55191752 | 55191679 | ID=MS.gene85599.t1.exon9;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55191679 | 55191752 | 55191679 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55191883 | 55191957 | 55191883 | ID=MS.gene85599.t1.exon10;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55191883 | 55191957 | 55191883 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55192144 | 55192417 | 55192144 | ID=MS.gene85599.t1.exon11;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55192144 | 55192417 | 55192144 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| chr1.3 | exon | 55192990 | 55193471 | 55192990 | ID=MS.gene85599.t1.exon12;Parent=MS.gene85599.t1 |
| chr1.3 | CDS | 55192990 | 55193471 | 55192990 | ID=cds.MS.gene85599.t1;Parent=MS.gene85599.t1 |
| Gene Sequence |
| Protein sequence |
