Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92296.t1 | PNX93638.1 | 81.4 | 306 | 56 | 1 | 1 | 306 | 1 | 305 | 5.00E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92296.t1 | B2TPM3 | 37.6 | 271 | 126 | 10 | 9 | 276 | 3 | 233 | 3.9e-32 | 140.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92296.t1 | A0A2K3MS27 | 81.4 | 306 | 56 | 1 | 1 | 306 | 1 | 305 | 3.6e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050095 | MS.gene92296 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene050381 | MS.gene92296 | 0.815579 | 8.60E-52 | -1.69E-46 |
| MS.gene05104 | MS.gene92296 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene92296 | 0.808976 | 2.38E-50 | -1.69E-46 |
| MS.gene051632 | MS.gene92296 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene92296 | 0.804679 | 1.92E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene92296 | 0.807343 | 5.30E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene92296 | 0.823654 | 1.23E-53 | -1.69E-46 |
| MS.gene054181 | MS.gene92296 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene055124 | MS.gene92296 | 0.823674 | 1.22E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene92296 | 0.806924 | 6.49E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene92296 | 0.809356 | 1.97E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene92296 | 0.807657 | 4.54E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene92296 | 0.826542 | 2.56E-54 | -1.69E-46 |
| MS.gene057547 | MS.gene92296 | 0.805173 | 1.52E-49 | -1.69E-46 |
| MS.gene057550 | MS.gene92296 | 0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene92296 | 0.811877 | 5.62E-51 | -1.69E-46 |
| MS.gene058099 | MS.gene92296 | 0.807143 | 5.84E-50 | -1.69E-46 |
| MS.gene058109 | MS.gene92296 | 0.802393 | 5.73E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene92296 | 0.803138 | 4.02E-49 | -1.69E-46 |
| MS.gene058171 | MS.gene92296 | 0.81695 | 4.24E-52 | -1.69E-46 |
| MS.gene058173 | MS.gene92296 | 0.804189 | 2.43E-49 | -1.69E-46 |
| MS.gene058175 | MS.gene92296 | 0.815001 | 1.16E-51 | -1.69E-46 |
| MS.gene058179 | MS.gene92296 | 0.809558 | 1.78E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene92296 | 0.813347 | 2.68E-51 | -1.69E-46 |
| MS.gene059037 | MS.gene92296 | 0.829806 | 4.19E-55 | -1.69E-46 |
| MS.gene059223 | MS.gene92296 | 0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene059953 | MS.gene92296 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene060593 | MS.gene92296 | 0.801763 | 7.72E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76157 | MS.gene92296 | PPI |
| MS.gene92296 | MS.gene057003 | PPI |
| MS.gene92296 | MS.gene85230 | PPI |
| MS.gene051956 | MS.gene92296 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92296.t1 | MTR_5g006290 | 78.896 | 308 | 62 | 2 | 1 | 306 | 1 | 307 | 0.0 | 506 |
| MS.gene92296.t1 | MTR_5g006300 | 90.945 | 254 | 11 | 2 | 2 | 249 | 3 | 250 | 7.23e-169 | 469 |
| MS.gene92296.t1 | MTR_1g104500 | 70.550 | 309 | 85 | 4 | 1 | 306 | 1 | 306 | 5.01e-161 | 451 |
| MS.gene92296.t1 | MTR_5g006290 | 81.275 | 251 | 45 | 1 | 1 | 249 | 1 | 251 | 1.46e-154 | 433 |
| MS.gene92296.t1 | MTR_2g099720 | 36.061 | 330 | 175 | 7 | 1 | 297 | 46 | 372 | 1.12e-60 | 197 |
| MS.gene92296.t1 | MTR_1g104513 | 46.250 | 80 | 41 | 1 | 204 | 283 | 1 | 78 | 2.25e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92296.t1 | AT4G14930 | 58.333 | 300 | 114 | 5 | 4 | 297 | 11 | 305 | 1.76e-124 | 358 |
| MS.gene92296.t1 | AT4G14930 | 57.143 | 280 | 109 | 5 | 4 | 277 | 11 | 285 | 5.43e-113 | 329 |
| MS.gene92296.t1 | AT1G72880 | 36.025 | 322 | 163 | 6 | 9 | 294 | 63 | 377 | 5.85e-60 | 196 |
| MS.gene92296.t1 | AT1G72880 | 36.025 | 322 | 163 | 6 | 9 | 294 | 63 | 377 | 5.85e-60 | 196 |
Find 75 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCCTTTGCGGTTTC+TGG | 0.080018 | 5.1:-1130920 | MS.gene92296:intron |
| GGTAGTCAGTGGCATAAATA+AGG | 0.269395 | 5.1:-1130751 | MS.gene92296:CDS |
| GCTTCCGACGAGAGGGGTTT+GGG | 0.282212 | 5.1:+1129083 | None:intergenic |
| ATTTGTATGTCCAGGGTTAA+AGG | 0.329046 | 5.1:-1130061 | MS.gene92296:intron |
| TTAACTTGTTTGACAGCAAC+AGG | 0.330194 | 5.1:+1130956 | None:intergenic |
| ATTCTTTATATCAACCAGTA+TGG | 0.333966 | 5.1:+1129979 | None:intergenic |
| AGCTTCCGACGAGAGGGGTT+TGG | 0.341404 | 5.1:+1129082 | None:intergenic |
| TGCTCCTGGTTTGAGAGCTT+TGG | 0.342858 | 5.1:-1131362 | MS.gene92296:CDS |
| ACCTGGTTTACTTACCTATC+AGG | 0.357327 | 5.1:+1131292 | None:intergenic |
| GTCAAACAAGTTAACATTCA+TGG | 0.358879 | 5.1:-1130947 | MS.gene92296:CDS |
| ATTACTGTTACTCCTCTTGT+TGG | 0.359891 | 5.1:-1129164 | MS.gene92296:CDS |
| TTGTAGCCATTCCTCAAAAT+AGG | 0.371094 | 5.1:+1129112 | None:intergenic |
| CTCGCAAATAAAAGATGTTC+AGG | 0.372141 | 5.1:+1129648 | None:intergenic |
| GGTAAAAGTATCTTTAAGAT+TGG | 0.377853 | 5.1:-1129774 | MS.gene92296:CDS |
| ACCAGTATGGTGCTTATGAT+TGG | 0.395152 | 5.1:+1129992 | None:intergenic |
| GAGAGCTTTGGTTGAATCCC+TGG | 0.400114 | 5.1:-1131350 | MS.gene92296:CDS |
| GTCATATCCGATGACAATAT+TGG | 0.403178 | 5.1:+1129720 | None:intergenic |
| AATATACCAGTCATATGAAA+TGG | 0.404590 | 5.1:+1130301 | None:intergenic |
| TCTTAGTCTGTGCTCCTGAT+AGG | 0.419734 | 5.1:-1131306 | MS.gene92296:intron |
| TCCAATCATAAGCACCATAC+TGG | 0.425888 | 5.1:-1129993 | MS.gene92296:CDS |
| TGGAACCGTTGCTTCCTTTG+CGG | 0.426141 | 5.1:-1130927 | MS.gene92296:CDS |
| TTATGGTTAGCAACATCGTT+TGG | 0.448421 | 5.1:+1129917 | None:intergenic |
| CAATCTCCATTTCATATGAC+TGG | 0.460076 | 5.1:-1130307 | MS.gene92296:intron |
| ATTTCCTACAACACCTGATC+TGG | 0.463342 | 5.1:-1130772 | MS.gene92296:CDS |
| ACTACCAGATCAGGTGTTGT+AGG | 0.466354 | 5.1:+1130768 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 5.1:-1130362 | MS.gene92296:CDS |
| AAAGTATCTTTAAGATTGGA+TGG | 0.485897 | 5.1:-1129770 | MS.gene92296:CDS |
| GGGTTACAAGCTAACAAGGC+AGG | 0.490829 | 5.1:-1129796 | MS.gene92296:CDS |
| TTCGTTCTTTGCAGGTACTC+CGG | 0.499552 | 5.1:-1130829 | MS.gene92296:intron |
| AGGTGTATCAGTATCAGTAT+TGG | 0.502952 | 5.1:+1129698 | None:intergenic |
| GTAGTCAGTGGCATAAATAA+GGG | 0.514796 | 5.1:-1130750 | MS.gene92296:CDS |
| CCGGCTGATTGCACTTCTCT+CGG | 0.516037 | 5.1:-1130810 | MS.gene92296:CDS |
| TACGGATTACACATTCTTGA+AGG | 0.516264 | 5.1:-1129276 | MS.gene92296:CDS |
| CCGTTAGCCATTGTGTGACA+TGG | 0.521413 | 5.1:-1130985 | MS.gene92296:CDS |
| AAACGATGTTGCTAACCATA+AGG | 0.528344 | 5.1:-1129915 | MS.gene92296:intron |
| TCATATGAAATGGAGATTGA+AGG | 0.532405 | 5.1:+1130311 | None:intergenic |
| TGAAGGGATATCATTAAAGA+AGG | 0.534821 | 5.1:+1130328 | None:intergenic |
| CATATGAAATGGAGATTGAA+GGG | 0.535556 | 5.1:+1130312 | None:intergenic |
| GATTACACATTCTTGAAGGC+GGG | 0.535645 | 5.1:-1129272 | MS.gene92296:CDS |
| AACAACTTTGGAGATGGATG+AGG | 0.538698 | 5.1:-1131428 | None:intergenic |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 5.1:-1130351 | MS.gene92296:CDS |
| ATTCTGATAACAAACGATGA+TGG | 0.543399 | 5.1:-1131391 | MS.gene92296:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.543522 | 5.1:-1130374 | MS.gene92296:intron |
| ATGCCACTGACTACCAGATC+AGG | 0.544823 | 5.1:+1130759 | None:intergenic |
| CTTCCGACGAGAGGGGTTTG+GGG | 0.545820 | 5.1:+1129084 | None:intergenic |
| TGTTGTAGGAAATAGTGCTC+TGG | 0.558048 | 5.1:+1130782 | None:intergenic |
| GAGATGGATGAGGGTAAGCT+AGG | 0.559116 | 5.1:-1131418 | MS.gene92296:CDS |
| CCGAGAGAAGTGCAATCAGC+CGG | 0.562865 | 5.1:+1130810 | None:intergenic |
| TGTACTTGATCATGACGATA+CGG | 0.570922 | 5.1:-1129294 | MS.gene92296:CDS |
| TCAACCAAAGCTCTCAAACC+AGG | 0.570986 | 5.1:+1131358 | None:intergenic |
| CTATAAAGCTTCCGACGAGA+GGG | 0.577851 | 5.1:+1129076 | None:intergenic |
| GCACGAGAGAGACCAACAAG+AGG | 0.582223 | 5.1:+1129152 | None:intergenic |
| TAAAGAATCAAAGCTACCCT+GGG | 0.585985 | 5.1:-1129964 | MS.gene92296:CDS |
| GATGATGGTATCGATGCTCC+TGG | 0.590611 | 5.1:-1131376 | MS.gene92296:CDS |
| AGAAGGACCAATATTGTCAT+CGG | 0.592757 | 5.1:-1129727 | MS.gene92296:CDS |
| ACTATAAAGCTTCCGACGAG+AGG | 0.593114 | 5.1:+1129075 | None:intergenic |
| ATAAAGAATCAAAGCTACCC+TGG | 0.599661 | 5.1:-1129965 | MS.gene92296:CDS |
| CCATGTCACACAATGGCTAA+CGG | 0.601876 | 5.1:+1130985 | None:intergenic |
| ACAACTTTGGAGATGGATGA+GGG | 0.609762 | 5.1:-1131427 | None:intergenic |
| ATAAATAAGGGTAGCAACTG+CGG | 0.609893 | 5.1:-1130738 | MS.gene92296:CDS |
| AAAAGGGTTACAAGCTAACA+AGG | 0.613958 | 5.1:-1129800 | MS.gene92296:intron |
| CAAGTCACCTCTCAGACAGA+AGG | 0.626825 | 5.1:-1129744 | MS.gene92296:CDS |
| GGATTACACATTCTTGAAGG+CGG | 0.632840 | 5.1:-1129273 | MS.gene92296:CDS |
| GGTTACAAGCTAACAAGGCA+GGG | 0.632843 | 5.1:-1129795 | MS.gene92296:CDS |
| TCTTGTTGGTCTCTCTCGTG+CGG | 0.637394 | 5.1:-1129150 | MS.gene92296:CDS |
| AGAAACCGCAAAGGAAGCAA+CGG | 0.646643 | 5.1:+1130922 | None:intergenic |
| TATAAAGCTTCCGACGAGAG+GGG | 0.648568 | 5.1:+1129077 | None:intergenic |
| TGTCCCCAAACCCCTCTCGT+CGG | 0.652779 | 5.1:-1129087 | MS.gene92296:CDS |
| TATTGGTCCTTCTGTCTGAG+AGG | 0.667411 | 5.1:+1129737 | None:intergenic |
| GCAGCAAGAGCAAAGTCGTG+TGG | 0.670936 | 5.1:+1130028 | None:intergenic |
| ACACCTGATCTGGTAGTCAG+TGG | 0.675568 | 5.1:-1130762 | MS.gene92296:CDS |
| GGTGAAGCCATGTCACACAA+TGG | 0.678364 | 5.1:+1130978 | None:intergenic |
| TAACTTGTTTGACAGCAACA+GGG | 0.679661 | 5.1:+1130957 | None:intergenic |
| CAACTAACCAGAAACCGCAA+AGG | 0.682214 | 5.1:+1130913 | None:intergenic |
| GTATCTTTAAGATTGGATGG+AGG | 0.682656 | 5.1:-1129767 | MS.gene92296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTAAGTAAAAAAAA+AGG | + | chr5.1:1130892-1130911 | None:intergenic | 10.0% |
| !!! | ATCTTTTATAACTAATTTAT+TGG | - | chr5.1:1130650-1130669 | MS.gene92296:intron | 10.0% |
| !! | ACAATTATAAGCTAAAAAAT+TGG | + | chr5.1:1130283-1130302 | None:intergenic | 15.0% |
| !! | TAAGTAAAAAAAAAGGAAAA+AGG | + | chr5.1:1130885-1130904 | None:intergenic | 15.0% |
| !! | TATTACATCATTATTCATTA+GGG | + | chr5.1:1131142-1131161 | None:intergenic | 15.0% |
| !! | TTATTACATCATTATTCATT+AGG | + | chr5.1:1131143-1131162 | None:intergenic | 15.0% |
| !!! | GTATTTTAAACTAACATAAA+GGG | + | chr5.1:1129397-1129416 | None:intergenic | 15.0% |
| !!! | TCTTTTTGTTAAAGTTATTT+CGG | - | chr5.1:1130044-1130063 | MS.gene92296:CDS | 15.0% |
| !!! | TGTATTTTAAACTAACATAA+AGG | + | chr5.1:1129398-1129417 | None:intergenic | 15.0% |
| !! | AATATTCAGTAAATCATAAG+AGG | + | chr5.1:1130024-1130043 | None:intergenic | 20.0% |
| !! | ACTTATTACAATATACCTTA+TGG | + | chr5.1:1130594-1130613 | None:intergenic | 20.0% |
| !! | ATATTCAGTAAATCATAAGA+GGG | + | chr5.1:1130023-1130042 | None:intergenic | 20.0% |
| !! | ATTCTTTAATCTCAATCAAA+CGG | + | chr5.1:1129265-1129284 | None:intergenic | 20.0% |
| !! | CTATGTAGAACTATAAAAAA+GGG | + | chr5.1:1130966-1130985 | None:intergenic | 20.0% |
| !! | CTTATAATTGTAACTGATAA+CGG | - | chr5.1:1130292-1130311 | MS.gene92296:intron | 20.0% |
| !! | TACTATTATTGACCATTTAA+AGG | - | chr5.1:1130405-1130424 | MS.gene92296:intron | 20.0% |
| !! | TTTATTATATGACATGTAGA+CGG | - | chr5.1:1129427-1129446 | MS.gene92296:intron | 20.0% |
| !!! | AATAATCTCTTAACTTTTGT+AGG | - | chr5.1:1131158-1131177 | MS.gene92296:intron | 20.0% |
| !!! | TCAATAGAAAAATTTTCAAC+AGG | + | chr5.1:1129924-1129943 | None:intergenic | 20.0% |
| ! | AATATACCAGTCATATGAAA+TGG | + | chr5.1:1130193-1130212 | None:intergenic | 25.0% |
| ! | ACATACAAATAGCCTTTAAA+TGG | + | chr5.1:1130420-1130439 | None:intergenic | 25.0% |
| ! | ACTAACATAAAGGGATATTT+AGG | + | chr5.1:1129388-1129407 | None:intergenic | 25.0% |
| ! | ACTGATACACCTAAAAATTA+TGG | - | chr5.1:1130804-1130823 | MS.gene92296:CDS | 25.0% |
| ! | ATATTCAAAAAACATTTCCC+AGG | + | chr5.1:1130547-1130566 | None:intergenic | 25.0% |
| ! | ATTCTTTATATCAACCAGTA+TGG | + | chr5.1:1130515-1130534 | None:intergenic | 25.0% |
| ! | CATTTCAAATTTCAAGGAAA+TGG | + | chr5.1:1129999-1130018 | None:intergenic | 25.0% |
| ! | GACTAAGACATTAAAAAGAT+TGG | + | chr5.1:1129173-1129192 | None:intergenic | 25.0% |
| ! | GCTATGTAGAACTATAAAAA+AGG | + | chr5.1:1130967-1130986 | None:intergenic | 25.0% |
| ! | TAAGAAGCTATTGTTATAGA+AGG | + | chr5.1:1130384-1130403 | None:intergenic | 25.0% |
| ! | TATTCAAAAAACATTTCCCA+GGG | + | chr5.1:1130546-1130565 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTCATAGCAAA+TGG | - | chr5.1:1129873-1129892 | MS.gene92296:intron | 25.0% |
| !! | TCTTAACTTTTGTAGGTAAA+AGG | - | chr5.1:1131165-1131184 | MS.gene92296:intron | 25.0% |
| !!! | AAAGTATCTTTAAGATTGGA+TGG | - | chr5.1:1130721-1130740 | MS.gene92296:intron | 25.0% |
| !!! | GGTAAAAGTATCTTTAAGAT+TGG | - | chr5.1:1130717-1130736 | MS.gene92296:intron | 25.0% |
| AATGAATGTCTCGAGAATTA+TGG | - | chr5.1:1130315-1130334 | MS.gene92296:CDS | 30.0% | |
| ATTCTGATAACAAACGATGA+TGG | - | chr5.1:1129100-1129119 | MS.gene92296:CDS | 30.0% | |
| CACTGCTTAAAGTCTAAAAA+AGG | + | chr5.1:1129821-1129840 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATTGAA+GGG | + | chr5.1:1130182-1130201 | None:intergenic | 30.0% | |
| CTAAACAATCCTAAACTACT+TGG | - | chr5.1:1131082-1131101 | MS.gene92296:intron | 30.0% | |
| CTATATGAATTTGATCACCA+CGG | + | chr5.1:1129226-1129245 | None:intergenic | 30.0% | |
| GAATATGTTGTAATAGACTG+AGG | - | chr5.1:1131001-1131020 | MS.gene92296:intron | 30.0% | |
| GATGTGAATTCTTTCATGTT+TGG | - | chr5.1:1129325-1129344 | MS.gene92296:intron | 30.0% | |
| GTCAAACAAGTTAACATTCA+TGG | - | chr5.1:1129544-1129563 | MS.gene92296:intron | 30.0% | |
| TCATATGAAATGGAGATTGA+AGG | + | chr5.1:1130183-1130202 | None:intergenic | 30.0% | |
| TCATTATTCATTAGGGAAAG+AGG | + | chr5.1:1131135-1131154 | None:intergenic | 30.0% | |
| TCTATATGATCTTGATCCAA+CGG | - | chr5.1:1129297-1129316 | MS.gene92296:CDS | 30.0% | |
| TGAAGGGATATCATTAAAGA+AGG | + | chr5.1:1130166-1130185 | None:intergenic | 30.0% | |
| TGAGCTTATGAAAATGGAAA+TGG | + | chr5.1:1129619-1129638 | None:intergenic | 30.0% | |
| TGCTTAAAGTCTAAAAAAGG+CGG | + | chr5.1:1129818-1129837 | None:intergenic | 30.0% | |
| TGTAGAACTATAAAAAAGGG+TGG | + | chr5.1:1130963-1130982 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACATGCTTCTG+TGG | - | chr5.1:1130208-1130227 | MS.gene92296:intron | 30.0% |
| !!! | CTTGCAACAATTTTTGAAAC+AGG | + | chr5.1:1129364-1129383 | None:intergenic | 30.0% |
| AAAAGGGTTACAAGCTAACA+AGG | - | chr5.1:1130691-1130710 | MS.gene92296:intron | 35.0% | |
| AAACGATGTTGCTAACCATA+AGG | - | chr5.1:1130576-1130595 | MS.gene92296:intron | 35.0% | |
| AAAGGCTATTTGTATGTCCA+GGG | - | chr5.1:1130423-1130442 | MS.gene92296:intron | 35.0% | |
| AATGTCCATCCAAGTAGTTT+AGG | + | chr5.1:1131094-1131113 | None:intergenic | 35.0% | |
| ACAATCCTAAACTACTTGGA+TGG | - | chr5.1:1131086-1131105 | MS.gene92296:intron | 35.0% | |
| AGAAGGACCAATATTGTCAT+CGG | - | chr5.1:1130764-1130783 | MS.gene92296:CDS | 35.0% | |
| AGGTGTATCAGTATCAGTAT+TGG | + | chr5.1:1130796-1130815 | None:intergenic | 35.0% | |
| ATAAAGAATCAAAGCTACCC+TGG | - | chr5.1:1130526-1130545 | MS.gene92296:intron | 35.0% | |
| ATAAATAAGGGTAGCAACTG+CGG | - | chr5.1:1129753-1129772 | MS.gene92296:CDS | 35.0% | |
| ATTACTCTTTCCTTTAACCC+TGG | + | chr5.1:1130443-1130462 | None:intergenic | 35.0% | |
| ATTACTGTTACTCCTCTTGT+TGG | - | chr5.1:1131327-1131346 | MS.gene92296:CDS | 35.0% | |
| ATTTGTATGTCCAGGGTTAA+AGG | - | chr5.1:1130430-1130449 | MS.gene92296:intron | 35.0% | |
| CAATCTCCATTTCATATGAC+TGG | - | chr5.1:1130184-1130203 | MS.gene92296:intron | 35.0% | |
| CTCGCAAATAAAAGATGTTC+AGG | + | chr5.1:1130846-1130865 | None:intergenic | 35.0% | |
| CTTAAAGTCTAAAAAAGGCG+GGG | + | chr5.1:1129816-1129835 | None:intergenic | 35.0% | |
| GAGGGTCATTTCAAATTTCA+AGG | + | chr5.1:1130005-1130024 | None:intergenic | 35.0% | |
| GCTTAAAGTCTAAAAAAGGC+GGG | + | chr5.1:1129817-1129836 | None:intergenic | 35.0% | |
| GTAGTCAGTGGCATAAATAA+GGG | - | chr5.1:1129741-1129760 | MS.gene92296:CDS | 35.0% | |
| GTCATATCCGATGACAATAT+TGG | + | chr5.1:1130774-1130793 | None:intergenic | 35.0% | |
| TAAAGAATCAAAGCTACCCT+GGG | - | chr5.1:1130527-1130546 | MS.gene92296:intron | 35.0% | |
| TAAAGGCTATTTGTATGTCC+AGG | - | chr5.1:1130422-1130441 | MS.gene92296:intron | 35.0% | |
| TAGACAGAACAGAACAACTA+TGG | + | chr5.1:1130096-1130115 | None:intergenic | 35.0% | |
| TGAGCTTGAGCTTATGAAAA+TGG | + | chr5.1:1129625-1129644 | None:intergenic | 35.0% | |
| TGTACTTGATCATGACGATA+CGG | - | chr5.1:1131197-1131216 | MS.gene92296:intron | 35.0% | |
| TTATGGTTAGCAACATCGTT+TGG | + | chr5.1:1130577-1130596 | None:intergenic | 35.0% | |
| TTATTCATTAGGGAAAGAGG+AGG | + | chr5.1:1131132-1131151 | None:intergenic | 35.0% | |
| TTGTAGCCATTCCTCAAAAT+AGG | + | chr5.1:1131382-1131401 | None:intergenic | 35.0% | |
| ! | AGATTGTCAGACCTATTTTG+AGG | - | chr5.1:1131368-1131387 | MS.gene92296:CDS | 35.0% |
| ! | GATGACGTGCCATAATTTTT+AGG | + | chr5.1:1130816-1130835 | None:intergenic | 35.0% |
| ! | TACGGATTACACATTCTTGA+AGG | - | chr5.1:1131215-1131234 | MS.gene92296:intron | 35.0% |
| !! | AAAAAGATTGGTGTTGACCA+GGG | + | chr5.1:1129161-1129180 | None:intergenic | 35.0% |
| !! | ACATCTTTTATTTGCGAGAG+AGG | - | chr5.1:1130848-1130867 | MS.gene92296:intron | 35.0% |
| !! | GACTATTTTTCGTTCTTTGC+AGG | - | chr5.1:1129654-1129673 | MS.gene92296:CDS | 35.0% |
| !! | GTATCTTTAAGATTGGATGG+AGG | - | chr5.1:1130724-1130743 | MS.gene92296:intron | 35.0% |
| !! | TAAAAAGATTGGTGTTGACC+AGG | + | chr5.1:1129162-1129181 | None:intergenic | 35.0% |
| !! | TAACTTGTTTGACAGCAACA+GGG | + | chr5.1:1129537-1129556 | None:intergenic | 35.0% |
| !! | TTAACTTGTTTGACAGCAAC+AGG | + | chr5.1:1129538-1129557 | None:intergenic | 35.0% |
| ACCAGTATGGTGCTTATGAT+TGG | + | chr5.1:1130502-1130521 | None:intergenic | 40.0% | |
| ACCTGGTTTACTTACCTATC+AGG | + | chr5.1:1129202-1129221 | None:intergenic | 40.0% | |
| ATTTCCTACAACACCTGATC+TGG | - | chr5.1:1129719-1129738 | MS.gene92296:CDS | 40.0% | |
| GAATTCACATCAATGACCGT+TGG | + | chr5.1:1129316-1129335 | None:intergenic | 40.0% | |
| GATTACACATTCTTGAAGGC+GGG | - | chr5.1:1131219-1131238 | MS.gene92296:intron | 40.0% | |
| GGATTACACATTCTTGAAGG+CGG | - | chr5.1:1131218-1131237 | MS.gene92296:intron | 40.0% | |
| GGTAGTCAGTGGCATAAATA+AGG | - | chr5.1:1129740-1129759 | MS.gene92296:CDS | 40.0% | |
| TCCAATCATAAGCACCATAC+TGG | - | chr5.1:1130498-1130517 | MS.gene92296:intron | 40.0% | |
| TCCTGATAGGTAAGTAAACC+AGG | - | chr5.1:1129198-1129217 | MS.gene92296:intron | 40.0% | |
| TCGTCATCTGTTCATAGCTT+AGG | + | chr5.1:1129971-1129990 | None:intergenic | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | + | chr5.1:1130122-1130141 | None:intergenic | 40.0% | |
| TGTTGTAGGAAATAGTGCTC+TGG | + | chr5.1:1129712-1129731 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | - | chr5.1:1130117-1130136 | MS.gene92296:intron | 40.0% | |
| ! | GTTTAGTCTTCCAGAGAACT+TGG | + | chr5.1:1131068-1131087 | None:intergenic | 40.0% |
| !! | CTTTTATTTGCGAGAGAGGT+AGG | - | chr5.1:1130852-1130871 | MS.gene92296:intron | 40.0% |
| !! | GTCAGACCTATTTTGAGGAA+TGG | - | chr5.1:1131373-1131392 | MS.gene92296:CDS | 40.0% |
| AAAGGGTGGAGTTCATCTGA+AGG | + | chr5.1:1130949-1130968 | None:intergenic | 45.0% | |
| AATTTGATCACCACGGAACC+TGG | + | chr5.1:1129219-1129238 | None:intergenic | 45.0% | |
| AGAAACCGCAAAGGAAGCAA+CGG | + | chr5.1:1129572-1129591 | None:intergenic | 45.0% | |
| CAACTAACCAGAAACCGCAA+AGG | + | chr5.1:1129581-1129600 | None:intergenic | 45.0% | |
| CCATGTCACACAATGGCTAA+CGG | + | chr5.1:1129509-1129528 | None:intergenic | 45.0% | |
| CTATAAAGCTTCCGACGAGA+GGG | + | chr5.1:1131418-1131437 | None:intergenic | 45.0% | |
| GGTTACAAGCTAACAAGGCA+GGG | - | chr5.1:1130696-1130715 | MS.gene92296:intron | 45.0% | |
| GTCGTCTGTGCATGGAAAAA+GGG | - | chr5.1:1130675-1130694 | MS.gene92296:intron | 45.0% | |
| GTGCCTGAGTAAACACTGAA+AGG | + | chr5.1:1130123-1130142 | None:intergenic | 45.0% | |
| TATAAAGCTTCCGACGAGAG+GGG | + | chr5.1:1131417-1131436 | None:intergenic | 45.0% | |
| TATTGGTCCTTCTGTCTGAG+AGG | + | chr5.1:1130757-1130776 | None:intergenic | 45.0% | |
| TCAACCAAAGCTCTCAAACC+AGG | + | chr5.1:1129136-1129155 | None:intergenic | 45.0% | |
| TCTTAGTCTGTGCTCCTGAT+AGG | - | chr5.1:1129185-1129204 | MS.gene92296:intron | 45.0% | |
| TGTCGTCTGTGCATGGAAAA+AGG | - | chr5.1:1130674-1130693 | MS.gene92296:intron | 45.0% | |
| TTCGTTCTTTGCAGGTACTC+CGG | - | chr5.1:1129662-1129681 | MS.gene92296:CDS | 45.0% | |
| ! | ACTACCAGATCAGGTGTTGT+AGG | + | chr5.1:1129726-1129745 | None:intergenic | 45.0% |
| ! | TATTGGTTGTCGTCTGTGCA+TGG | - | chr5.1:1130667-1130686 | MS.gene92296:intron | 45.0% |
| !! | CTTTGCGGTTTCTGGTTAGT+TGG | - | chr5.1:1129579-1129598 | MS.gene92296:intron | 45.0% |
| !! | GAAGTTGATGCCAAGTTCTC+TGG | - | chr5.1:1131055-1131074 | MS.gene92296:intron | 45.0% |
| ACACCTGATCTGGTAGTCAG+TGG | - | chr5.1:1129729-1129748 | MS.gene92296:CDS | 50.0% | |
| CAAGTCACCTCTCAGACAGA+AGG | - | chr5.1:1130747-1130766 | MS.gene92296:CDS | 50.0% | |
| CCGTTAGCCATTGTGTGACA+TGG | - | chr5.1:1129506-1129525 | MS.gene92296:intron | 50.0% | |
| CTAAAAAAGGCGGGGACATG+AGG | + | chr5.1:1129808-1129827 | None:intergenic | 50.0% | |
| GGGTTACAAGCTAACAAGGC+AGG | - | chr5.1:1130695-1130714 | MS.gene92296:intron | 50.0% | |
| GGTAAGTAAACCAGGTTCCG+TGG | - | chr5.1:1129206-1129225 | MS.gene92296:intron | 50.0% | |
| GGTGAAGCCATGTCACACAA+TGG | + | chr5.1:1129516-1129535 | None:intergenic | 50.0% | |
| GTTGCTTCCTTTGCGGTTTC+TGG | - | chr5.1:1129571-1129590 | MS.gene92296:intron | 50.0% | |
| TGGAACCGTTGCTTCCTTTG+CGG | - | chr5.1:1129564-1129583 | MS.gene92296:intron | 50.0% | |
| ! | ATGCCACTGACTACCAGATC+AGG | + | chr5.1:1129735-1129754 | None:intergenic | 50.0% |
| ! | GAGAGCTTTGGTTGAATCCC+TGG | - | chr5.1:1129141-1129160 | MS.gene92296:CDS | 50.0% |
| ! | GTTTACTCAGGCACTGTAGC+TGG | - | chr5.1:1130129-1130148 | MS.gene92296:intron | 50.0% |
| ! | TCTTGTTGGTCTCTCTCGTG+CGG | - | chr5.1:1131341-1131360 | MS.gene92296:CDS | 50.0% |
| ! | TGCTCCTGGTTTGAGAGCTT+TGG | - | chr5.1:1129129-1129148 | MS.gene92296:CDS | 50.0% |
| !! | GATGATGGTATCGATGCTCC+TGG | - | chr5.1:1129115-1129134 | MS.gene92296:CDS | 50.0% |
| AAAAAGGCGGGGACATGAGG+AGG | + | chr5.1:1129805-1129824 | None:intergenic | 55.0% | |
| AAGAGGAGGCGAGGAGGATT+AGG | + | chr5.1:1131118-1131137 | None:intergenic | 55.0% | |
| CATTAGGGAAAGAGGAGGCG+AGG | + | chr5.1:1131127-1131146 | None:intergenic | 55.0% | |
| CCGGCTGATTGCACTTCTCT+CGG | - | chr5.1:1129681-1129700 | MS.gene92296:CDS | 55.0% | |
| GCACGAGAGAGACCAACAAG+AGG | + | chr5.1:1131342-1131361 | None:intergenic | 55.0% | |
| GCAGCAAGAGCAAAGTCGTG+TGG | + | chr5.1:1130466-1130485 | None:intergenic | 55.0% | |
| ! | CCGAGAGAAGTGCAATCAGC+CGG | + | chr5.1:1129684-1129703 | None:intergenic | 55.0% |
| AGCTTCCGACGAGAGGGGTT+TGG | + | chr5.1:1131412-1131431 | None:intergenic | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | - | chr5.1:1130140-1130159 | MS.gene92296:intron | 60.0% | |
| CTTCCGACGAGAGGGGTTTG+GGG | + | chr5.1:1131410-1131429 | None:intergenic | 60.0% | |
| GCTTCCGACGAGAGGGGTTT+GGG | + | chr5.1:1131411-1131430 | None:intergenic | 60.0% | |
| TAGGGAAAGAGGAGGCGAGG+AGG | + | chr5.1:1131124-1131143 | None:intergenic | 60.0% | |
| TGTCCCCAAACCCCTCTCGT+CGG | - | chr5.1:1131404-1131423 | MS.gene92296:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1129076 | 1131437 | 1129076 | ID=MS.gene92296 |
| chr5.1 | mRNA | 1129076 | 1131437 | 1129076 | ID=MS.gene92296.t1;Parent=MS.gene92296 |
| chr5.1 | exon | 1131307 | 1131437 | 1131307 | ID=MS.gene92296.t1.exon1;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1131307 | 1131437 | 1131307 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1130921 | 1131018 | 1130921 | ID=MS.gene92296.t1.exon2;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1130921 | 1131018 | 1130921 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1130729 | 1130837 | 1130729 | ID=MS.gene92296.t1.exon3;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1130729 | 1130837 | 1130729 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1130308 | 1130385 | 1130308 | ID=MS.gene92296.t1.exon4;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1130308 | 1130385 | 1130308 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1129916 | 1130069 | 1129916 | ID=MS.gene92296.t1.exon5;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1129916 | 1130069 | 1129916 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1129644 | 1129817 | 1129644 | ID=MS.gene92296.t1.exon6;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1129644 | 1129817 | 1129644 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1129268 | 1129333 | 1129268 | ID=MS.gene92296.t1.exon7;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1129268 | 1129333 | 1129268 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| chr5.1 | exon | 1129076 | 1129186 | 1129076 | ID=MS.gene92296.t1.exon8;Parent=MS.gene92296.t1 |
| chr5.1 | CDS | 1129076 | 1129186 | 1129076 | ID=cds.MS.gene92296.t1;Parent=MS.gene92296.t1 |
| Gene Sequence |
| Protein sequence |
