Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93426.t1 | XP_024626891.1 | 99.6 | 279 | 1 | 0 | 1 | 279 | 62 | 340 | 7.50E-143 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93426.t1 | A0A396K343 | 99.6 | 279 | 1 | 0 | 1 | 279 | 62 | 340 | 5.4e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene93426 | 0.828388 | 9.25E-55 | -1.69E-46 |
| MS.gene049232 | MS.gene93426 | 0.816869 | 4.43E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene93426 | 0.810872 | 9.29E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene93426 | 0.830342 | 3.10E-55 | -1.69E-46 |
| MS.gene050504 | MS.gene93426 | 0.815156 | 1.07E-51 | -1.69E-46 |
| MS.gene050577 | MS.gene93426 | 0.803094 | 4.11E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene93426 | 0.826753 | 2.28E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene93426 | 0.857341 | 1.74E-62 | -1.69E-46 |
| MS.gene050868 | MS.gene93426 | 0.850743 | 1.39E-60 | -1.69E-46 |
| MS.gene050871 | MS.gene93426 | 0.853154 | 2.88E-61 | -1.69E-46 |
| MS.gene050950 | MS.gene93426 | 0.818235 | 2.18E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene93426 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene93426 | 0.843253 | 1.57E-58 | -1.69E-46 |
| MS.gene052966 | MS.gene93426 | 0.820545 | 6.48E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene93426 | 0.82381 | 1.13E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene93426 | 0.860266 | 2.33E-63 | -1.69E-46 |
| MS.gene053632 | MS.gene93426 | 0.80672 | 7.17E-50 | -1.69E-46 |
| MS.gene053633 | MS.gene93426 | 0.8096 | 1.75E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene93426 | 0.853164 | 2.86E-61 | -1.69E-46 |
| MS.gene054595 | MS.gene93426 | 0.846797 | 1.73E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene93426 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene93426 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene93426 | 0.81861 | 1.79E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene93426 | 0.818788 | 1.63E-52 | -1.69E-46 |
| MS.gene055751 | MS.gene93426 | 0.812331 | 4.47E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene93426 | 0.820024 | 8.54E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene93426 | 0.810249 | 1.27E-50 | -1.69E-46 |
| MS.gene056510 | MS.gene93426 | 0.852346 | 4.90E-61 | -1.69E-46 |
| MS.gene056657 | MS.gene93426 | 0.802942 | 4.42E-49 | -1.69E-46 |
| MS.gene057086 | MS.gene93426 | 0.80565 | 1.21E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene93426 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene93426 | 0.820936 | 5.27E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene93426 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene93426 | 0.838938 | 2.14E-57 | -1.69E-46 |
| MS.gene059667 | MS.gene93426 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene93426 | 0.814096 | 1.83E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene93426 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene060295 | MS.gene93426 | 0.932279 | 1.08E-94 | -1.69E-46 |
| MS.gene060482 | MS.gene93426 | 0.806885 | 6.62E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene93426 | 0.809364 | 1.96E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene93426 | 0.812972 | 3.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93426.t1 | MTR_6g008890 | 34.276 | 283 | 159 | 6 | 2 | 279 | 71 | 331 | 1.22e-37 | 136 |
| MS.gene93426.t1 | MTR_4g071610 | 34.276 | 283 | 159 | 6 | 2 | 279 | 71 | 331 | 1.22e-37 | 136 |
| MS.gene93426.t1 | MTR_3g115240 | 29.461 | 241 | 133 | 10 | 4 | 241 | 83 | 289 | 1.24e-17 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93426.t1 | AT2G14910 | 65.233 | 279 | 92 | 1 | 1 | 279 | 78 | 351 | 5.15e-121 | 350 |
| MS.gene93426.t1 | AT2G14910 | 65.233 | 279 | 92 | 1 | 1 | 279 | 78 | 351 | 1.10e-120 | 350 |
| MS.gene93426.t1 | AT5G14970 | 38.489 | 278 | 146 | 6 | 2 | 279 | 78 | 330 | 2.27e-45 | 156 |
| MS.gene93426.t1 | AT1G63610 | 28.571 | 224 | 131 | 6 | 4 | 227 | 89 | 283 | 6.48e-17 | 79.7 |
| MS.gene93426.t1 | AT1G63610 | 29.592 | 196 | 109 | 6 | 4 | 199 | 89 | 255 | 1.24e-15 | 75.1 |
| MS.gene93426.t1 | AT1G63610 | 38.554 | 83 | 51 | 0 | 4 | 86 | 89 | 171 | 1.87e-13 | 67.8 |
Find 59 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGCCCGCCTGCTCTTT+TGG | 0.245314 | 1.3:-73255061 | None:intergenic |
| TTTGTAGAAATCTGCTTTAT+CGG | 0.259410 | 1.3:-73258108 | None:intergenic |
| GCTATGAAAAGGACCATTTC+TGG | 0.273572 | 1.3:-73258014 | MS.gene93426:CDS |
| AGAAGAAAAGAATGATTTAC+TGG | 0.277554 | 1.3:-73256138 | MS.gene93426:CDS |
| TCCCGAGTTAATGATATAAA+AGG | 0.301606 | 1.3:+73255086 | None:intergenic |
| GAGGGCTTTGAATGCATCTT+AGG | 0.310216 | 1.3:+73255200 | None:intergenic |
| CTTCAAATGCAGCAATTTGT+TGG | 0.343190 | 1.3:-73256161 | MS.gene93426:CDS |
| ATTTACATCCCCTGAGCTTA+AGG | 0.344914 | 1.3:-73255267 | MS.gene93426:CDS |
| TGCTGAGTATAGGCTTTGTT+TGG | 0.347450 | 1.3:-73257101 | MS.gene93426:CDS |
| AGGACCATTTCTGGTATGTT+GGG | 0.354983 | 1.3:-73258005 | MS.gene93426:CDS |
| AACTTAGTACTTTCTGCCTT+CGG | 0.377112 | 1.3:+73257040 | None:intergenic |
| CTCATTTCTTCAATGATGAC+TGG | 0.387115 | 1.3:-73257918 | MS.gene93426:CDS |
| GAGATCGCTTCAACCTGAAC+AGG | 0.407417 | 1.3:-73256108 | MS.gene93426:intron |
| ACAAAAGGCAAAACCTGTTC+AGG | 0.409693 | 1.3:+73256095 | None:intergenic |
| AAGCTCAGGGGATGTAAATT+CGG | 0.424523 | 1.3:+73255271 | None:intergenic |
| TGAATATTACTCACATCTAA+AGG | 0.427179 | 1.3:+73258065 | None:intergenic |
| CAACCCCAACATACCAGAAA+TGG | 0.436781 | 1.3:+73258001 | None:intergenic |
| CATTGAAGAAATGAGTAACT+TGG | 0.446046 | 1.3:+73257926 | None:intergenic |
| TTCATAGCATCAGCTGTAGT+TGG | 0.452605 | 1.3:+73258029 | None:intergenic |
| TTGAATGCATCTTAGGAGAA+AGG | 0.461924 | 1.3:+73255207 | None:intergenic |
| ATGTCGTTGTTGAGGCTTTG+TGG | 0.462573 | 1.3:-73257959 | MS.gene93426:CDS |
| AGAAATATATTCTTGAGCTT+CGG | 0.466226 | 1.3:+73256892 | None:intergenic |
| AAGGACCATTTCTGGTATGT+TGG | 0.467555 | 1.3:-73258006 | MS.gene93426:CDS |
| TGTCGTTGTTGAGGCTTTGT+GGG | 0.467846 | 1.3:-73257958 | MS.gene93426:CDS |
| AGGATGATGTCCTTAAGCTC+AGG | 0.490001 | 1.3:+73255257 | None:intergenic |
| CATTGCGCAATGCTGAGTAT+AGG | 0.493261 | 1.3:-73257111 | MS.gene93426:CDS |
| ACAGTTGGATCAGCAAATGC+TGG | 0.494546 | 1.3:-73255158 | MS.gene93426:CDS |
| GGAGACCGTGGACAACAGAT+AGG | 0.510446 | 1.3:+73255237 | None:intergenic |
| TGAATGCATCTTAGGAGAAA+GGG | 0.514493 | 1.3:+73255208 | None:intergenic |
| AGTGTAAATGTTATTGACTT+TGG | 0.517614 | 1.3:-73256992 | MS.gene93426:CDS |
| TGCATTCTCTGATGTAGTAG+AGG | 0.521881 | 1.3:+73255181 | None:intergenic |
| GCATTCTCTGATGTAGTAGA+GGG | 0.533188 | 1.3:+73255182 | None:intergenic |
| TCAATTTAATGTCGTTGTTG+AGG | 0.537014 | 1.3:-73257967 | MS.gene93426:CDS |
| CTACAGCTGATGCTATGAAA+AGG | 0.537612 | 1.3:-73258025 | MS.gene93426:CDS |
| TCATTTCTTCAATGATGACT+GGG | 0.538264 | 1.3:-73257917 | MS.gene93426:intron |
| ATCAGCAAATGCTGGGAATG+AGG | 0.548689 | 1.3:-73255150 | MS.gene93426:CDS |
| ACGACATTAAATTGATCAGA+TGG | 0.549624 | 1.3:+73257975 | None:intergenic |
| GAAATGAGTAACTTGGAAAG+AGG | 0.557837 | 1.3:+73257933 | None:intergenic |
| ATAGCATCAGCTGTAGTTGG+CGG | 0.566459 | 1.3:+73258032 | None:intergenic |
| GGATGATGTCCTTAAGCTCA+GGG | 0.566566 | 1.3:+73255258 | None:intergenic |
| GGACCATTTCTGGTATGTTG+GGG | 0.572912 | 1.3:-73258004 | MS.gene93426:CDS |
| GACGTTGACATTCAAGACCT+TGG | 0.582269 | 1.3:-73256926 | MS.gene93426:CDS |
| ACATCAGAGAATGCAACAGT+TGG | 0.582607 | 1.3:-73255173 | MS.gene93426:CDS |
| GAAATACTGACCAAAAGAGC+AGG | 0.586296 | 1.3:+73255051 | None:intergenic |
| CAGTTGGATCAGCAAATGCT+GGG | 0.591873 | 1.3:-73255157 | MS.gene93426:CDS |
| AGGAGCTACGTGAAGTGAAG+AGG | 0.593841 | 1.3:-73256196 | MS.gene93426:CDS |
| TGAATGTCAACGTCCTCGTG+AGG | 0.617337 | 1.3:+73256935 | None:intergenic |
| TACTGACCAAAAGAGCAGGC+GGG | 0.622149 | 1.3:+73255055 | None:intergenic |
| ATCATCCTATCTGTTGTCCA+CGG | 0.630634 | 1.3:-73255242 | MS.gene93426:CDS |
| AAAGGGTGGCAAGGAGACCG+TGG | 0.634725 | 1.3:+73255225 | None:intergenic |
| TCTTAGGAGAAAGGGTGGCA+AGG | 0.640314 | 1.3:+73255216 | None:intergenic |
| CAGAGATCTTGAGAAGCCGA+AGG | 0.645044 | 1.3:-73257056 | MS.gene93426:CDS |
| ATACTGACCAAAAGAGCAGG+CGG | 0.646205 | 1.3:+73255054 | None:intergenic |
| CAAAGTTGAAAAGCCTCACG+AGG | 0.665589 | 1.3:-73256948 | MS.gene93426:CDS |
| ATGCATCTTAGGAGAAAGGG+TGG | 0.676044 | 1.3:+73255211 | None:intergenic |
| CTTCGGCAGATATTTGACCA+AGG | 0.705206 | 1.3:+73256909 | None:intergenic |
| TAACATTTACACTGTCACGT+AGG | 0.718366 | 1.3:+73257002 | None:intergenic |
| TGGGAATGAGGATTGTGCTG+AGG | 0.725822 | 1.3:-73255138 | MS.gene93426:CDS |
| GATGATGTCCTTAAGCTCAG+GGG | 0.768594 | 1.3:+73255259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAAATTTCATTA+TGG | + | chr1.3:73255582-73255601 | None:intergenic | 10.0% |
| !! | AATACATAGTAATATAAAAT+AGG | + | chr1.3:73257806-73257825 | None:intergenic | 10.0% |
| !! | AATTGTTAAAATTTCATTAT+GGG | + | chr1.3:73255581-73255600 | None:intergenic | 10.0% |
| !! | TTCAAAAGAATTAAAAATTT+GGG | + | chr1.3:73255947-73255966 | None:intergenic | 10.0% |
| !!! | GATTTTATAAATAATGATTT+TGG | - | chr1.3:73257295-73257314 | MS.gene93426:intron | 10.0% |
| !! | CTTCAAAAGAATTAAAAATT+TGG | + | chr1.3:73255948-73255967 | None:intergenic | 15.0% |
| !! | GCTTTAATAAATCATATAAA+GGG | + | chr1.3:73257390-73257409 | None:intergenic | 15.0% |
| !! | TCAAAAGAATTAAAAATTTG+GGG | + | chr1.3:73255946-73255965 | None:intergenic | 15.0% |
| !! | TTAGTGTTTAAATGAATATT+TGG | + | chr1.3:73257726-73257745 | None:intergenic | 15.0% |
| !!! | AGCTTTAATAAATCATATAA+AGG | + | chr1.3:73257391-73257410 | None:intergenic | 15.0% |
| !!! | ATTTTAAGAATTTTATGCAT+TGG | - | chr1.3:73256359-73256378 | MS.gene93426:intron | 15.0% |
| !!! | TTATATTTTGTATTTGTGTA+AGG | - | chr1.3:73257240-73257259 | MS.gene93426:intron | 15.0% |
| !! | AAATAAATGGACAATCTATT+CGG | - | chr1.3:73255842-73255861 | MS.gene93426:intron | 20.0% |
| !! | AATAAATAGAGTAGATCATA+TGG | - | chr1.3:73256565-73256584 | MS.gene93426:intron | 20.0% |
| !! | AATACAAAATCTTCCTAATA+TGG | + | chr1.3:73255720-73255739 | None:intergenic | 20.0% |
| !! | ACACAAATACAAAATATAAC+AGG | + | chr1.3:73257239-73257258 | None:intergenic | 20.0% |
| !! | ACATAGCCTAAATAAATAAA+TGG | - | chr1.3:73255829-73255848 | MS.gene93426:intron | 20.0% |
| !! | AGATTTATAGATTAATGAGT+TGG | - | chr1.3:73256652-73256671 | MS.gene93426:intron | 20.0% |
| !! | ATAAAATTCTTAAAATGCCA+AGG | + | chr1.3:73256355-73256374 | None:intergenic | 20.0% |
| !! | ATACAAAATCTTCCTAATAT+GGG | + | chr1.3:73255719-73255738 | None:intergenic | 20.0% |
| !! | ATATGATTTATTAAAGCTGA+GGG | - | chr1.3:73257393-73257412 | MS.gene93426:intron | 20.0% |
| !! | GATTGTCCATTTATTTATTT+AGG | + | chr1.3:73255838-73255857 | None:intergenic | 20.0% |
| !! | TATATGATTTATTAAAGCTG+AGG | - | chr1.3:73257392-73257411 | MS.gene93426:intron | 20.0% |
| !! | TTGTGATAAAAAAAACAGTA+TGG | - | chr1.3:73256688-73256707 | MS.gene93426:intron | 20.0% |
| !!! | GTTTCTCTTATAGTTTTTTT+AGG | + | chr1.3:73256623-73256642 | None:intergenic | 20.0% |
| !!! | TCTATAGTATACCTTTTTTA+TGG | + | chr1.3:73256319-73256338 | None:intergenic | 20.0% |
| ! | AAGTAATGTTTATCCAAATG+GGG | - | chr1.3:73255993-73256012 | MS.gene93426:intron | 25.0% |
| ! | AGAAATATATTCTTGAGCTT+CGG | + | chr1.3:73256274-73256293 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAATGATTTAC+TGG | - | chr1.3:73257025-73257044 | MS.gene93426:CDS | 25.0% |
| ! | ATATAGCATATAAAGAAAGC+TGG | + | chr1.3:73257124-73257143 | None:intergenic | 25.0% |
| ! | CAAGTAATGTTTATCCAAAT+GGG | - | chr1.3:73255992-73256011 | MS.gene93426:intron | 25.0% |
| ! | TACAAAATCTTCCTAATATG+GGG | + | chr1.3:73255718-73255737 | None:intergenic | 25.0% |
| ! | TATGATTTATTAAAGCTGAG+GGG | - | chr1.3:73257394-73257413 | MS.gene93426:intron | 25.0% |
| ! | TATTTGGATTTGTCACATAT+TGG | + | chr1.3:73257710-73257729 | None:intergenic | 25.0% |
| ! | TGAATATTACTCACATCTAA+AGG | + | chr1.3:73255101-73255120 | None:intergenic | 25.0% |
| !! | AAATTTTCATGTTCTTGCTA+TGG | - | chr1.3:73255312-73255331 | MS.gene93426:intron | 25.0% |
| !! | AGCCTTTTATATCATTAACT+CGG | - | chr1.3:73258075-73258094 | MS.gene93426:CDS | 25.0% |
| !! | CAAACAAGAATTTTCACAAA+AGG | + | chr1.3:73257086-73257105 | None:intergenic | 25.0% |
| !! | TTTTTATCACAAGCCATATT+TGG | + | chr1.3:73256680-73256699 | None:intergenic | 25.0% |
| !!! | AGTGTAAATGTTATTGACTT+TGG | - | chr1.3:73256171-73256190 | MS.gene93426:CDS | 25.0% |
| !!! | GTTTATATCAGTGTTTTAGT+CGG | - | chr1.3:73257833-73257852 | MS.gene93426:intron | 25.0% |
| !!! | TTTATATCAGTGTTTTAGTC+GGG | - | chr1.3:73257834-73257853 | MS.gene93426:intron | 25.0% |
| AAATAGAGTAGATCATATGG+AGG | - | chr1.3:73256568-73256587 | MS.gene93426:intron | 30.0% | |
| AAATATTGCACAGTGGAATT+TGG | - | chr1.3:73255479-73255498 | MS.gene93426:intron | 30.0% | |
| AAATTCCACTGTGCAATATT+TGG | + | chr1.3:73255480-73255499 | None:intergenic | 30.0% | |
| AACACCTAAAGTAGAAAAGA+TGG | - | chr1.3:73256487-73256506 | MS.gene93426:intron | 30.0% | |
| AACTACAAGATAACAAACCA+AGG | + | chr1.3:73257185-73257204 | None:intergenic | 30.0% | |
| AATTCTTAAAATGCCAAGGA+AGG | + | chr1.3:73256351-73256370 | None:intergenic | 30.0% | |
| ACGACATTAAATTGATCAGA+TGG | + | chr1.3:73255191-73255210 | None:intergenic | 30.0% | |
| AGAAAACGAGTTCAATGTAA+CGG | + | chr1.3:73256908-73256927 | None:intergenic | 30.0% | |
| AGTAATGTTTATCCAAATGG+GGG | - | chr1.3:73255994-73256013 | MS.gene93426:intron | 30.0% | |
| ATAATAGTCCCCTAACTTAA+AGG | + | chr1.3:73255768-73255787 | None:intergenic | 30.0% | |
| ATGTTGCCAACATAAAACTT+TGG | + | chr1.3:73256447-73256466 | None:intergenic | 30.0% | |
| CATTAGCCATTGTTAGTTAT+TGG | - | chr1.3:73256420-73256439 | MS.gene93426:intron | 30.0% | |
| CATTGAAGAAATGAGTAACT+TGG | + | chr1.3:73255240-73255259 | None:intergenic | 30.0% | |
| CCAAGTAATGTTTATCCAAA+TGG | - | chr1.3:73255991-73256010 | MS.gene93426:intron | 30.0% | |
| CCATTTGGATAAACATTACT+TGG | + | chr1.3:73255994-73256013 | None:intergenic | 30.0% | |
| TAAAGAAAGCTGGTTGTAAA+TGG | + | chr1.3:73257114-73257133 | None:intergenic | 30.0% | |
| TACAGAATGTTGTCAAATTG+CGG | - | chr1.3:73255536-73255555 | MS.gene93426:intron | 30.0% | |
| TATCTGTGCTTATTAACCAT+TGG | - | chr1.3:73257320-73257339 | MS.gene93426:intron | 30.0% | |
| TCAATTTAATGTCGTTGTTG+AGG | - | chr1.3:73255196-73255215 | MS.gene93426:CDS | 30.0% | |
| TCATTTCTTCAATGATGACT+GGG | - | chr1.3:73255246-73255265 | MS.gene93426:CDS | 30.0% | |
| TCCCGAGTTAATGATATAAA+AGG | + | chr1.3:73258080-73258099 | None:intergenic | 30.0% | |
| TCGTTTGTCTTCCATAAAAA+AGG | - | chr1.3:73256305-73256324 | MS.gene93426:intron | 30.0% | |
| TTTGATTGTCACATTTCTCA+TGG | - | chr1.3:73256790-73256809 | MS.gene93426:intron | 30.0% | |
| TTTGGACCAATAACTAACAA+TGG | + | chr1.3:73256429-73256448 | None:intergenic | 30.0% | |
| ! | ATAAACCCTACCTTTAAGTT+AGG | - | chr1.3:73255755-73255774 | MS.gene93426:intron | 30.0% |
| ! | GCCTTTTATATCATTAACTC+GGG | - | chr1.3:73258076-73258095 | MS.gene93426:CDS | 30.0% |
| ! | TAAACCCTACCTTTAAGTTA+GGG | - | chr1.3:73255756-73255775 | MS.gene93426:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr1.3:73256664-73256683 | MS.gene93426:intron | 30.0% |
| ! | TGGAATTTTCATCCTAATGA+TGG | + | chr1.3:73257690-73257709 | None:intergenic | 30.0% |
| ! | TGTTTCTTTTCCTTCCTTTT+TGG | - | chr1.3:73256934-73256953 | MS.gene93426:CDS | 30.0% |
| ! | TTGTATCCTTTTCCATCATT+AGG | - | chr1.3:73257675-73257694 | MS.gene93426:intron | 30.0% |
| ! | TTTCATCCTAATGATGGAAA+AGG | + | chr1.3:73257684-73257703 | None:intergenic | 30.0% |
| !! | AAGCTTTATTCATGTACTAC+AGG | - | chr1.3:73256025-73256044 | MS.gene93426:intron | 30.0% |
| !! | AATTGCCATGCATTTTAACA+TGG | - | chr1.3:73257144-73257163 | MS.gene93426:intron | 30.0% |
| !! | ATTGGTCCAAAGTTTTATGT+TGG | - | chr1.3:73256438-73256457 | MS.gene93426:intron | 30.0% |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | chr1.3:73256498-73256517 | MS.gene93426:intron | 30.0% |
| !!! | ATTTTTGAGTTCCCCATATT+AGG | - | chr1.3:73255704-73255723 | MS.gene93426:intron | 30.0% |
| !!! | CTATGTTTTTGAGTTTAGGA+GGG | + | chr1.3:73255815-73255834 | None:intergenic | 30.0% |
| !!! | TAGGCTATGTTTTTGAGTTT+AGG | + | chr1.3:73255819-73255838 | None:intergenic | 30.0% |
| !!! | TATGTTTTTGAGTTTAGGAG+GGG | + | chr1.3:73255814-73255833 | None:intergenic | 30.0% |
| AAATCATATAAAGGGCAACC+TGG | + | chr1.3:73257581-73257600 | None:intergenic | 35.0% | |
| AACATTAGAGAGAGAGAACT+GGG | - | chr1.3:73256462-73256481 | MS.gene93426:intron | 35.0% | |
| AACTTAGTACTTTCTGCCTT+CGG | + | chr1.3:73256126-73256145 | None:intergenic | 35.0% | |
| AATAGCCAAATATTGCACAG+TGG | - | chr1.3:73255472-73255491 | MS.gene93426:intron | 35.0% | |
| AATCAGATTACAAGAGGTAG+AGG | - | chr1.3:73256593-73256612 | MS.gene93426:intron | 35.0% | |
| ACCTAAAGTAGAAAAGATGG+TGG | - | chr1.3:73256490-73256509 | MS.gene93426:intron | 35.0% | |
| ACGAGGAAAAAAACTACCAA+TGG | + | chr1.3:73257339-73257358 | None:intergenic | 35.0% | |
| ACTCAAAAATGTATTGGAGG+AGG | + | chr1.3:73255694-73255713 | None:intergenic | 35.0% | |
| AGCTAATCGGATTGTTATCA+TGG | - | chr1.3:73255335-73255354 | MS.gene93426:intron | 35.0% | |
| ATAATGCGTTGAATTGTGTG+TGG | - | chr1.3:73256386-73256405 | MS.gene93426:intron | 35.0% | |
| CAGTTATCTCAATTGCAGTT+AGG | - | chr1.3:73256879-73256898 | MS.gene93426:CDS | 35.0% | |
| CGTTCTCTACAAAACTAATG+TGG | + | chr1.3:73255392-73255411 | None:intergenic | 35.0% | |
| CTCAAAAATGTATTGGAGGA+GGG | + | chr1.3:73255693-73255712 | None:intergenic | 35.0% | |
| CTCATTTCTTCAATGATGAC+TGG | - | chr1.3:73255245-73255264 | MS.gene93426:CDS | 35.0% | |
| CTTCAAATGCAGCAATTTGT+TGG | - | chr1.3:73257002-73257021 | MS.gene93426:CDS | 35.0% | |
| GAAACGTGAAATATATCACG+AGG | + | chr1.3:73257356-73257375 | None:intergenic | 35.0% | |
| GAAATGAGTAACTTGGAAAG+AGG | + | chr1.3:73255233-73255252 | None:intergenic | 35.0% | |
| GAACGAGAAGAAAATGCTTA+TGG | - | chr1.3:73255407-73255426 | MS.gene93426:intron | 35.0% | |
| GAGGATAATCAGATTACAAG+AGG | - | chr1.3:73256587-73256606 | MS.gene93426:intron | 35.0% | |
| GGAACTCAAAAATGTATTGG+AGG | + | chr1.3:73255697-73255716 | None:intergenic | 35.0% | |
| TAACATGGTGCAATTCTATC+TGG | - | chr1.3:73257159-73257178 | MS.gene93426:intron | 35.0% | |
| TAACATTTACACTGTCACGT+AGG | + | chr1.3:73256164-73256183 | None:intergenic | 35.0% | |
| TAGAATTGAAGATCCTTCCT+TGG | - | chr1.3:73256335-73256354 | MS.gene93426:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1.3:73257489-73257508 | MS.gene93426:intron | 35.0% | |
| TGAATGCATCTTAGGAGAAA+GGG | + | chr1.3:73257958-73257977 | None:intergenic | 35.0% | |
| TGGGGAACTCAAAAATGTAT+TGG | + | chr1.3:73255700-73255719 | None:intergenic | 35.0% | |
| TGTTGACATGTTGTCAATCT+CGG | + | chr1.3:73255620-73255639 | None:intergenic | 35.0% | |
| TTGAATGCATCTTAGGAGAA+AGG | + | chr1.3:73257959-73257978 | None:intergenic | 35.0% | |
| TTGCACCATGTTAAAATGCA+TGG | + | chr1.3:73257152-73257171 | None:intergenic | 35.0% | |
| TTGTATTTGTGTAAGGTGTG+TGG | - | chr1.3:73257247-73257266 | MS.gene93426:intron | 35.0% | |
| ! | AAACCCTACCTTTAAGTTAG+GGG | - | chr1.3:73255757-73255776 | MS.gene93426:intron | 35.0% |
| ! | AAAGTCTTTTCCAACTAAGC+AGG | + | chr1.3:73257633-73257652 | None:intergenic | 35.0% |
| ! | AAGTCTTTTCCAACTAAGCA+GGG | + | chr1.3:73257632-73257651 | None:intergenic | 35.0% |
| ! | ATGGTCTCTAATTTGTCTGT+TGG | - | chr1.3:73256838-73256857 | MS.gene93426:intron | 35.0% |
| ! | TCCACCATCTTTTCTACTTT+AGG | + | chr1.3:73256494-73256513 | None:intergenic | 35.0% |
| ! | TCCTTTTTGGACACTTCTAA+AGG | - | chr1.3:73256947-73256966 | MS.gene93426:CDS | 35.0% |
| !! | TCCTTTAGAAGTGTCCAAAA+AGG | + | chr1.3:73256951-73256970 | None:intergenic | 35.0% |
| !! | TTAGAAGTGTCCAAAAAGGA+AGG | + | chr1.3:73256947-73256966 | None:intergenic | 35.0% |
| !!! | GCTATGTTTTTGAGTTTAGG+AGG | + | chr1.3:73255816-73255835 | None:intergenic | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1.3:73257490-73257509 | None:intergenic | 35.0% |
| AAAATAGGCTCAGGTGGTTT+GGG | - | chr1.3:73256513-73256532 | MS.gene93426:intron | 40.0% | |
| AAGCTCAGGGGATGTAAATT+CGG | + | chr1.3:73257895-73257914 | None:intergenic | 40.0% | |
| AATCTATTCGGAGAATGGAG+AGG | - | chr1.3:73255854-73255873 | MS.gene93426:intron | 40.0% | |
| ACAAAAGGCAAAACCTGTTC+AGG | + | chr1.3:73257071-73257090 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1.3:73257483-73257502 | MS.gene93426:intron | 40.0% | |
| ACATCAGAGAATGCAACAGT+TGG | - | chr1.3:73257990-73258009 | MS.gene93426:CDS | 40.0% | |
| ACATTAGAGAGAGAGAACTG+GGG | - | chr1.3:73256463-73256482 | MS.gene93426:intron | 40.0% | |
| AGTCCCCTAACTTAAAGGTA+GGG | + | chr1.3:73255763-73255782 | None:intergenic | 40.0% | |
| ATAATCAACACCGAAGGATG+AGG | + | chr1.3:73256820-73256839 | None:intergenic | 40.0% | |
| ATCATCCTATCTGTTGTCCA+CGG | - | chr1.3:73257921-73257940 | MS.gene93426:CDS | 40.0% | |
| ATTTACATCCCCTGAGCTTA+AGG | - | chr1.3:73257896-73257915 | MS.gene93426:intron | 40.0% | |
| CAACATTAGAGAGAGAGAAC+TGG | - | chr1.3:73256461-73256480 | MS.gene93426:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr1.3:73257484-73257503 | MS.gene93426:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr1.3:73257515-73257534 | MS.gene93426:intron | 40.0% | |
| CTACAGCTGATGCTATGAAA+AGG | - | chr1.3:73255138-73255157 | MS.gene93426:CDS | 40.0% | |
| GCATGTAGAGATAAGACTTG+TGG | - | chr1.3:73256535-73256554 | MS.gene93426:intron | 40.0% | |
| GCATTCTCTGATGTAGTAGA+GGG | + | chr1.3:73257984-73258003 | None:intergenic | 40.0% | |
| GCTATGAAAAGGACCATTTC+TGG | - | chr1.3:73255149-73255168 | MS.gene93426:CDS | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr1.3:73257439-73257458 | MS.gene93426:intron | 40.0% | |
| TAGTCCCCTAACTTAAAGGT+AGG | + | chr1.3:73255764-73255783 | None:intergenic | 40.0% | |
| TATAACCAACCCTGCTTAGT+TGG | - | chr1.3:73257620-73257639 | MS.gene93426:intron | 40.0% | |
| TGCATTCTCTGATGTAGTAG+AGG | + | chr1.3:73257985-73258004 | None:intergenic | 40.0% | |
| TGGACAATCTATTCGGAGAA+TGG | - | chr1.3:73255849-73255868 | MS.gene93426:intron | 40.0% | |
| TTCATAGCATCAGCTGTAGT+TGG | + | chr1.3:73255137-73255156 | None:intergenic | 40.0% | |
| ! | GTTCTTGCTATGGAGCTAAT+CGG | - | chr1.3:73255322-73255341 | MS.gene93426:intron | 40.0% |
| !! | AAGGACCATTTCTGGTATGT+TGG | - | chr1.3:73255157-73255176 | MS.gene93426:CDS | 40.0% |
| !! | AGGACCATTTCTGGTATGTT+GGG | - | chr1.3:73255158-73255177 | MS.gene93426:CDS | 40.0% |
| !! | GTGACATTATTAGCTTGTGC+AGG | - | chr1.3:73257780-73257799 | MS.gene93426:intron | 40.0% |
| !! | TCATCCTTCGGTGTTGATTA+TGG | - | chr1.3:73256819-73256838 | MS.gene93426:intron | 40.0% |
| !! | TGCTGAGTATAGGCTTTGTT+TGG | - | chr1.3:73256062-73256081 | MS.gene93426:intron | 40.0% |
| ACAGTTGGATCAGCAAATGC+TGG | - | chr1.3:73258005-73258024 | MS.gene93426:CDS | 45.0% | |
| AGGATGATGTCCTTAAGCTC+AGG | + | chr1.3:73257909-73257928 | None:intergenic | 45.0% | |
| ATAGCATCAGCTGTAGTTGG+CGG | + | chr1.3:73255134-73255153 | None:intergenic | 45.0% | |
| ATCAGCAAATGCTGGGAATG+AGG | - | chr1.3:73258013-73258032 | MS.gene93426:CDS | 45.0% | |
| ATGCATCTTAGGAGAAAGGG+TGG | + | chr1.3:73257955-73257974 | None:intergenic | 45.0% | |
| ATGTCGTTGTTGAGGCTTTG+TGG | - | chr1.3:73255204-73255223 | MS.gene93426:CDS | 45.0% | |
| CAAAGTTGAAAAGCCTCACG+AGG | - | chr1.3:73256215-73256234 | MS.gene93426:intron | 45.0% | |
| CAACCCCAACATACCAGAAA+TGG | + | chr1.3:73255165-73255184 | None:intergenic | 45.0% | |
| CAGTTGGATCAGCAAATGCT+GGG | - | chr1.3:73258006-73258025 | MS.gene93426:CDS | 45.0% | |
| CATTGCGCAATGCTGAGTAT+AGG | - | chr1.3:73256052-73256071 | MS.gene93426:intron | 45.0% | |
| CTTCGGCAGATATTTGACCA+AGG | + | chr1.3:73256257-73256276 | None:intergenic | 45.0% | |
| GAAAATAGGCTCAGGTGGTT+TGG | - | chr1.3:73256512-73256531 | MS.gene93426:intron | 45.0% | |
| GACGTTGACATTCAAGACCT+TGG | - | chr1.3:73256237-73256256 | MS.gene93426:intron | 45.0% | |
| GAGACCATAATCAACACCGA+AGG | + | chr1.3:73256826-73256845 | None:intergenic | 45.0% | |
| GATGATGTCCTTAAGCTCAG+GGG | + | chr1.3:73257907-73257926 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr1.3:73257514-73257533 | MS.gene93426:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr1.3:73257511-73257530 | MS.gene93426:intron | 45.0% | |
| GGATGATGTCCTTAAGCTCA+GGG | + | chr1.3:73257908-73257927 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr1.3:73257445-73257464 | MS.gene93426:intron | 45.0% | |
| TCATGGTATGCCTCATCCTT+CGG | - | chr1.3:73256807-73256826 | MS.gene93426:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr1.3:73257446-73257465 | MS.gene93426:intron | 45.0% | |
| TTAAAGCTGAGGGGTAACCT+TGG | - | chr1.3:73257403-73257422 | MS.gene93426:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.3:73256737-73256756 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.3:73256738-73256757 | None:intergenic | 45.0% |
| ! | CTCGTGAGGCTTTTCAACTT+TGG | + | chr1.3:73256217-73256236 | None:intergenic | 45.0% |
| ! | CTTTTCCAACTAAGCAGGGT+TGG | + | chr1.3:73257628-73257647 | None:intergenic | 45.0% |
| ! | TGTATTGGAGGAGGGTTTTG+AGG | + | chr1.3:73255685-73255704 | None:intergenic | 45.0% |
| ! | TGTCGTTGTTGAGGCTTTGT+GGG | - | chr1.3:73255205-73255224 | MS.gene93426:CDS | 45.0% |
| ! | TGTGCATGTTGCTATTGAGC+AGG | - | chr1.3:73257857-73257876 | MS.gene93426:intron | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.3:73257479-73257498 | None:intergenic | 45.0% |
| !! | AGATGGTGGAAAATAGGCTC+AGG | - | chr1.3:73256504-73256523 | MS.gene93426:intron | 45.0% |
| !! | GAGGGCTTTGAATGCATCTT+AGG | + | chr1.3:73257966-73257985 | None:intergenic | 45.0% |
| !! | GGACCATTTCTGGTATGTTG+GGG | - | chr1.3:73255159-73255178 | MS.gene93426:CDS | 45.0% |
| !! | GTATTGGAGGAGGGTTTTGA+GGG | + | chr1.3:73255684-73255703 | None:intergenic | 45.0% |
| ACTAAGTGGGGTCGACTACA+AGG | + | chr1.3:73256725-73256744 | None:intergenic | 50.0% | |
| AGGAGCTACGTGAAGTGAAG+AGG | - | chr1.3:73256967-73256986 | MS.gene93426:CDS | 50.0% | |
| AGTTTAGGAGGGGACGACTT+TGG | + | chr1.3:73255804-73255823 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr1.3:73257423-73257442 | None:intergenic | 50.0% | |
| CAGAGATCTTGAGAAGCCGA+AGG | - | chr1.3:73256107-73256126 | MS.gene93426:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.3:73256736-73256755 | MS.gene93426:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr1.3:73256739-73256758 | MS.gene93426:intron | 50.0% | |
| GAGATCGCTTCAACCTGAAC+AGG | - | chr1.3:73257055-73257074 | MS.gene93426:CDS | 50.0% | |
| GCTTCTCACATTCCCCCATT+TGG | + | chr1.3:73256009-73256028 | None:intergenic | 50.0% | |
| GGTGCAATTCTATCTGGCCT+TGG | - | chr1.3:73257165-73257184 | MS.gene93426:intron | 50.0% | |
| GTTTAGGAGGGGACGACTTT+GGG | + | chr1.3:73255803-73255822 | None:intergenic | 50.0% | |
| TCTTAGGAGAAAGGGTGGCA+AGG | + | chr1.3:73257950-73257969 | None:intergenic | 50.0% | |
| TGAATGTCAACGTCCTCGTG+AGG | + | chr1.3:73256231-73256250 | None:intergenic | 50.0% | |
| TGGGAATGAGGATTGTGCTG+AGG | - | chr1.3:73258025-73258044 | MS.gene93426:CDS | 50.0% | |
| TGGTGGAAAATAGGCTCAGG+TGG | - | chr1.3:73256507-73256526 | MS.gene93426:intron | 50.0% | |
| TGTAGTCGACCCCACTTAGT+GGG | - | chr1.3:73256725-73256744 | MS.gene93426:intron | 50.0% | |
| TTGTAGTCGACCCCACTTAG+TGG | - | chr1.3:73256724-73256743 | MS.gene93426:intron | 50.0% | |
| ! | AGGGGACGACTTTGGGAAAA+AGG | + | chr1.3:73255796-73255815 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.3:73256739-73256758 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1.3:73257458-73257477 | MS.gene93426:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.3:73256731-73256750 | MS.gene93426:intron | 55.0% | |
| GGAGACCGTGGACAACAGAT+AGG | + | chr1.3:73257929-73257948 | None:intergenic | 55.0% | |
| !! | AGTGGGATAAGGCTTGGTGG+TGG | - | chr1.3:73256742-73256761 | MS.gene93426:intron | 55.0% |
| AAAGGGTGGCAAGGAGACCG+TGG | + | chr1.3:73257941-73257960 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr1.3:73257555-73257574 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr1.3:73257412-73257431 | MS.gene93426:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr1.3:73257554-73257573 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1.3:73257527-73257546 | MS.gene93426:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1.3:73257542-73257561 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1.3:73257529-73257548 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr1.3:73257542-73257561 | MS.gene93426:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1.3:73257543-73257562 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+AGG | - | chr1.3:73257560-73257579 | MS.gene93426:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr1.3:73257543-73257562 | MS.gene93426:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr1.3:73257544-73257563 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr1.3:73257548-73257567 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr1.3:73257549-73257568 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73255062 | 73258123 | 73255062 | ID=MS.gene93426 |
| chr1.3 | mRNA | 73255062 | 73258123 | 73255062 | ID=MS.gene93426.t1;Parent=MS.gene93426 |
| chr1.3 | exon | 73257918 | 73258123 | 73257918 | ID=MS.gene93426.t1.exon1;Parent=MS.gene93426.t1 |
| chr1.3 | CDS | 73257918 | 73258123 | 73257918 | ID=cds.MS.gene93426.t1;Parent=MS.gene93426.t1 |
| chr1.3 | exon | 73256859 | 73257138 | 73256859 | ID=MS.gene93426.t1.exon2;Parent=MS.gene93426.t1 |
| chr1.3 | CDS | 73256859 | 73257138 | 73256859 | ID=cds.MS.gene93426.t1;Parent=MS.gene93426.t1 |
| chr1.3 | exon | 73256109 | 73256216 | 73256109 | ID=MS.gene93426.t1.exon3;Parent=MS.gene93426.t1 |
| chr1.3 | CDS | 73256109 | 73256216 | 73256109 | ID=cds.MS.gene93426.t1;Parent=MS.gene93426.t1 |
| chr1.3 | exon | 73255062 | 73255306 | 73255062 | ID=MS.gene93426.t1.exon4;Parent=MS.gene93426.t1 |
| chr1.3 | CDS | 73255062 | 73255306 | 73255062 | ID=cds.MS.gene93426.t1;Parent=MS.gene93426.t1 |
| Gene Sequence |
| Protein sequence |
