AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94149


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94149.t1 MTR_5g084460 71.610 236 57 2 1 233 1 229 1.29e-23 95.1
MS.gene94149.t1 MTR_5g084570 86.000 50 6 1 1 49 1 50 1.24e-22 91.3
MS.gene94149.t1 MTR_5g084540 75.806 62 14 1 1 61 1 62 2.37e-20 84.7
MS.gene94149.t1 MTR_5g084530 98.182 55 1 0 1 55 1 55 9.81e-18 77.0
MS.gene94149.t1 MTR_5g084470 96.341 82 3 0 152 233 117 198 8.09e-17 76.3
MS.gene94149.t1 MTR_5g084470 96.364 55 2 0 1 55 1 55 1.30e-16 75.9
MS.gene94149.t1 MTR_5g084470 96.341 82 3 0 152 233 128 209 9.93e-17 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 117 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCCACTGATGCTAAAA+AGG 0.209251 5.4:-66854013 MS.gene94149:CDS
GTAACTACCACCACCATATT+TGG 0.210470 5.4:+66851807 None:intergenic
ATGGTTGTAGCCTCCATATT+TGG 0.284242 5.4:+66852173 None:intergenic
GAAGTAAATGATGCCAAATA+TGG 0.357966 5.4:-66852186 MS.gene94149:CDS
GGTGGTTACAATGGTGGAGG+TGG 0.410599 5.4:-66852021 MS.gene94149:CDS
GAAATGAATGATGCCAAATA+TGG 0.415776 5.4:-66851820 MS.gene94149:CDS
GGTGGAGGACATGGTGGTCA+TGG 0.418033 5.4:-66851928 MS.gene94149:CDS
GGTGGAGGTCACGGTGGTCA+TGG 0.421667 5.4:-66851886 MS.gene94149:CDS
GGACATGGTGGTCATGGTGG+AGG 0.441377 5.4:-66851922 MS.gene94149:CDS
GGAGGTGGTCACGGTGGCCA+CGG 0.447409 5.4:-66851670 MS.gene94149:CDS
CATGCTAAGCCTCTTGGCTA+TGG 0.452537 5.4:-66854076 MS.gene94149:CDS
CACGGTGGACACGGTGGAGG+TGG 0.465334 5.4:-66851685 MS.gene94149:CDS
CATGGTGGTCATGGTGGAGG+TGG 0.475942 5.4:-66851919 MS.gene94149:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.479043 5.4:-66851904 MS.gene94149:CDS
GGAGGTGGTTACAATGGTGG+TGG 0.479043 5.4:-66851946 MS.gene94149:CDS
AATCCTCATGCTAAGCCTCT+TGG 0.494599 5.4:-66854082 MS.gene94149:CDS
TACAATGGTGGTGGAGGACA+TGG 0.501970 5.4:-66851937 MS.gene94149:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.504299 5.4:-66851901 MS.gene94149:CDS
CATGGTTGTAACTTCCTCCA+TGG 0.504992 5.4:+66851782 None:intergenic
TACAATGGTGGTGGAGGTCA+CGG 0.506705 5.4:-66851895 MS.gene94149:CDS
GGTCACGGTGGACACGGTGG+AGG 0.507552 5.4:-66851688 MS.gene94149:CDS
TTTCCTCAGTGATGTCCGCT+AGG 0.509380 5.4:-66854047 MS.gene94149:CDS
GGTGGATACAATGGTGGAGG+TGG 0.521371 5.4:-66851982 MS.gene94149:CDS
CATGGTGGAGGTGGTTACAA+TGG 0.522016 5.4:-66851910 MS.gene94149:CDS
GGAGGACATGGTGGTCATGG+TGG 0.524187 5.4:-66851925 MS.gene94149:CDS
AAATATGGAGGCTACAACCA+TGG 0.526109 5.4:-66852171 MS.gene94149:CDS
GGAGGTGGTCACGGTGGACA+CGG 0.533640 5.4:-66851694 MS.gene94149:CDS
GGTGGTTACAATGGTGGTGG+AGG 0.535349 5.4:-66851943 MS.gene94149:CDS
TTCCTCAGTGATGTCCGCTA+GGG 0.540952 5.4:-66854046 MS.gene94149:CDS
GGTGGTTACAACCATGGTGG+AGG 0.541181 5.4:-66852063 MS.gene94149:CDS
AGTTATCACCACGGTGGAGG+TGG 0.545081 5.4:-66851730 MS.gene94149:CDS
GGTTACAACCATGGTGGAGG+TGG 0.547395 5.4:-66852060 MS.gene94149:CDS
GGTTACCACAACGGTGGCGG+TGG 0.547786 5.4:-66852000 MS.gene94149:CDS
GGACACGGTGGAGGTGGTCA+CGG 0.548236 5.4:-66851679 MS.gene94149:CDS
GGTGGTTACCACAACGGTGG+CGG 0.548738 5.4:-66852003 MS.gene94149:CDS
GGAGGTTACAACCATGGTGG+AGG 0.550860 5.4:-66852099 MS.gene94149:CDS
GGTTACAACCATGGTGGAGG+TGG 0.550910 5.4:-66851961 MS.gene94149:CDS
GGTTACAACCATGGTGGAGG+TGG 0.550910 5.4:-66852096 MS.gene94149:CDS
GGTGGTTACCACAACGGTGG+TGG 0.551258 5.4:-66852042 MS.gene94149:CDS
GGCGGTGGATACAATGGTGG+AGG 0.551699 5.4:-66851985 MS.gene94149:CDS
GGTGGTTACAACCATGGTGG+AGG 0.556342 5.4:-66851964 MS.gene94149:CDS
GGTTACAACCACGGTGGAGG+TGG 0.560417 5.4:-66851709 MS.gene94149:CDS
GGAGGTGGTTACAACGGTGG+TGG 0.562839 5.4:-66852081 MS.gene94149:CDS
GGTAGTTATCACCACGGTGG+AGG 0.564481 5.4:-66851733 MS.gene94149:CDS
GGTGGTTACAACCACGGTGG+AGG 0.568751 5.4:-66851712 MS.gene94149:CDS
GGTTACCACAACGGTGGTGG+TGG 0.571583 5.4:-66852039 MS.gene94149:CDS
AACGGTGGCGGTGGATACAA+TGG 0.572921 5.4:-66851991 MS.gene94149:CDS
TGTATCCACCGCCACCGTTG+TGG 0.577751 5.4:+66851995 None:intergenic
AACGGTGGTGGTGGTTACAA+TGG 0.578197 5.4:-66852030 MS.gene94149:CDS
AACCACGGTGGAGGTGGTCA+CGG 0.578947 5.4:-66851703 MS.gene94149:CDS
GGTGGTTATAACCACGGTGG+TGG 0.581184 5.4:-66852150 MS.gene94149:CDS
GGAAGTTACAACCATGGTGG+AGG 0.585493 5.4:-66851775 MS.gene94149:CDS
GGAGGTTATAACCACGGTGG+AGG 0.590681 5.4:-66852117 MS.gene94149:CDS
CATGGTGGAGGTGGTTACAA+TGG 0.597788 5.4:-66851952 MS.gene94149:CDS
AACCACGGTGGTGGTTACAA+TGG 0.598930 5.4:-66852141 MS.gene94149:CDS
CACGGTGGTGGTTACAATGG+TGG 0.608752 5.4:-66852138 MS.gene94149:CDS
GGTGGTGGTTACAATGGTGG+AGG 0.609082 5.4:-66852024 MS.gene94149:CDS
GGTAGTTACAACCACGGAGG+AGG 0.611011 5.4:-66851754 MS.gene94149:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5.4:-66851907 MS.gene94149:CDS
GGTGGAGGTGGTTACAATGG+TGG 0.613370 5.4:-66851949 MS.gene94149:CDS
AACGGTGGTGGTTACAACCA+TGG 0.614503 5.4:-66852069 MS.gene94149:CDS
TGTAACCACCACCACCGTTG+TGG 0.615245 5.4:+66852034 None:intergenic
GGTGGTGGTTACAATGGTGG+AGG 0.625782 5.4:-66852135 MS.gene94149:CDS
GTAAATGATGCCAAATATGG+AGG 0.627438 5.4:-66852183 MS.gene94149:CDS
CGTTGTAACCACCTCCACCA+TGG 0.637472 5.4:+66852088 None:intergenic
AATGATGCCAAATATGGTGG+TGG 0.637670 5.4:-66851814 MS.gene94149:CDS
GGAGGTCACGGTGGTCATGG+CGG 0.640286 5.4:-66851883 MS.gene94149:CDS
TGTGGTAACCACCTCCACCA+TGG 0.642362 5.4:+66852052 None:intergenic
GTCTGTTGCCGTGCAAACTG+AGG 0.643641 5.4:-66851854 MS.gene94149:CDS
AACCATGGTGGTTATAACCA+CGG 0.645055 5.4:-66852156 MS.gene94149:CDS
CATGGTGGAGGTGGTTACAA+CGG 0.645837 5.4:-66852087 MS.gene94149:CDS
CACGGTGGAGGTTACAACCA+TGG 0.648231 5.4:-66852105 MS.gene94149:CDS
CATTGTAACCACCTCCACCA+TGG 0.649002 5.4:+66851953 None:intergenic
GGTGGTCACGGTGGACACGG+TGG 0.653298 5.4:-66851691 MS.gene94149:CDS
CACGGTGGAGGTGGTCACGG+TGG 0.653640 5.4:-66851676 MS.gene94149:CDS
TAGCCAAGAGGCTTAGCATG+AGG 0.658082 5.4:+66854079 None:intergenic
CACGGTGGAGGTGGTCACGG+TGG 0.660681 5.4:-66851700 MS.gene94149:CDS
CACCGTGGTTATAACCACCA+TGG 0.663353 5.4:+66852154 None:intergenic
GGTGGTGGTGGTTACAATGG+TGG 0.671495 5.4:-66852027 MS.gene94149:CDS
AATGGTGGTGGAGGACATGG+TGG 0.676073 5.4:-66851934 MS.gene94149:CDS
GGTGGAGGTGGTTACCACAA+CGG 0.676695 5.4:-66852048 MS.gene94149:CDS
GGTGGAGGTGGTTACCACAA+CGG 0.678715 5.4:-66852009 MS.gene94149:CDS
GGTGGAGGTGGTTACAACCA+TGG 0.679817 5.4:-66851970 MS.gene94149:CDS
GGTTGTAACTACCTCCACCA+TGG 0.680661 5.4:+66851764 None:intergenic
CCTCAGTTTGGTCAGCACCG+TGG 0.681435 5.4:+66851653 None:intergenic
GGTGGAGGTGGTTACAACCA+CGG 0.683488 5.4:-66851718 MS.gene94149:CDS
GGTGGTGGTAGTTACAACCA+TGG 0.683746 5.4:-66851799 MS.gene94149:CDS
CCACGGTGCTGACCAAACTG+AGG 0.687012 5.4:-66851653 MS.gene94149:CDS
CACCGTGACCACCTCCACCG+TGG 0.688584 5.4:+66851701 None:intergenic
ATGAATGATGCCAAATATGG+TGG 0.691119 5.4:-66851817 MS.gene94149:CDS
AAATAAGAGCCATAGCCAAG+AGG 0.700367 5.4:+66854067 None:intergenic
GGTGATAACTACCTCCTCCG+TGG 0.701736 5.4:+66851743 None:intergenic
GGAGGAAGTTACAACCATGG+TGG 0.708611 5.4:-66851778 MS.gene94149:CDS
GGTGGAGGTGGTTACAACGG+TGG 0.713237 5.4:-66852084 MS.gene94149:CDS
AATGGTGGTGGAGGTCACGG+TGG 0.715780 5.4:-66851892 MS.gene94149:CDS
AATGGTGGAGGTTATAACCA+CGG 0.716087 5.4:-66852123 MS.gene94149:CDS
GGTGGCGGTGGATACAATGG+TGG 0.717019 5.4:-66851988 MS.gene94149:CDS
GGTTGTAACCACCTCCACCG+TGG 0.717584 5.4:+66851722 None:intergenic
CATGGAGGAAGTTACAACCA+TGG 0.719430 5.4:-66851781 MS.gene94149:CDS
GGAGGTGGTTACCACAACGG+TGG 0.721174 5.4:-66852006 MS.gene94149:CDS
AGTTTCAGTTAAGTCCCTAG+CGG 0.722649 5.4:+66854032 None:intergenic
GTCCCTAGCGGACATCACTG+AGG 0.722830 5.4:+66854044 None:intergenic
GGTGGAGGTAGTTACAACCA+CGG 0.730738 5.4:-66851760 MS.gene94149:CDS
GGTGGTGGTTACAACCATGG+TGG 0.740350 5.4:-66852066 MS.gene94149:CDS
CACCATTGTAACCACCACCG+TGG 0.740555 5.4:+66852139 None:intergenic
GGAGGTGGTTACAACCATGG+TGG 0.740649 5.4:-66851967 MS.gene94149:CDS
GGTGGAGGTTACAACCATGG+TGG 0.744001 5.4:-66852102 MS.gene94149:CDS
TATGGAGGCTACAACCATGG+TGG 0.747738 5.4:-66852168 MS.gene94149:CDS
GGAGGTGGTTACCACAACGG+TGG 0.751214 5.4:-66852045 MS.gene94149:CDS
GGTGGTAGTTACAACCATGG+AGG 0.757972 5.4:-66851796 MS.gene94149:CDS
GGAGGTAGTTATCACCACGG+TGG 0.769330 5.4:-66851736 MS.gene94149:CDS
GGAGGAGGTAGTTATCACCA+CGG 0.770033 5.4:-66851739 MS.gene94149:CDS
GGTGGAGGTTATAACCACGG+TGG 0.774475 5.4:-66852120 MS.gene94149:CDS
CATGGTTGTAACCTCCACCG+TGG 0.775135 5.4:+66852106 None:intergenic
CATGGTGGTTATAACCACGG+TGG 0.779726 5.4:-66852153 MS.gene94149:CDS
GGAGGTGGTTACAACCACGG+TGG 0.797028 5.4:-66851715 MS.gene94149:CDS
GGAGGTAGTTACAACCACGG+AGG 0.812225 5.4:-66851757 MS.gene94149:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr5.4:66851952-66851971 MS.gene94149:CDS 0.0%
!! ATATATATATATATATATAT+AGG + chr5.4:66851971-66851952 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG - chr5.4:66851952-66851971 MS.gene94149:CDS 0.0%
!! ATATATATATATATATATAT+GGG + chr5.4:66851971-66851952 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG - chr5.4:66851953-66851972 MS.gene94149:CDS 0.0%
!! TATATATATATATATATATA+GGG + chr5.4:66851972-66851953 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - chr5.4:66851953-66851972 MS.gene94149:CDS 0.0%
!! TATATATATATATATATATA+TGG + chr5.4:66851972-66851953 None:intergenic 0.0%
!! TATATATTTATTTATATTTA+AGG - chr5.4:66853470-66853489 MS.gene94149:intron 0.0%
!! ATATAGTCTATTTATATATA+AGG - chr5.4:66853098-66853117 MS.gene94149:intron 10.0%
!! TATAGTCTATTTATATATAA+GGG - chr5.4:66853099-66853118 MS.gene94149:intron 10.0%
!! TTAGATTAAGATAAAATTAA+AGG + chr5.4:66853352-66853333 None:intergenic 10.0%
!! TTAGATTAAGATAAAATTAA+TGG - chr5.4:66853333-66853352 MS.gene94149:intron 10.0%
!!! TTAATTTTATCTTAATCTAA+TGG - chr5.4:66852586-66852605 MS.gene94149:intron 10.0%
!!! TTAATTTTATCTTAATCTAA+TGG + chr5.4:66852605-66852586 None:intergenic 10.0%
!! ACCCATATATATATATATAT+AGG + chr5.4:66852190-66852171 None:intergenic 15.0%
!! ACCCTATATATATATATATA+TGG - chr5.4:66852420-66852439 MS.gene94149:intron 15.0%
!! ATTAAGATAAAATTAATGGT+GGG - chr5.4:66853337-66853356 MS.gene94149:intron 15.0%
!! CCCATATATATATATATATA+GGG + chr5.4:66852191-66852172 None:intergenic 15.0%
!! CCCTATATATATATATATAT+GGG - chr5.4:66852421-66852440 MS.gene94149:intron 15.0%
!! TCATTAACACAATTAATAAT+TGG - chr5.4:66852709-66852728 MS.gene94149:intron 15.0%
!!! GATCATATTTTAACAATATT+AGG - chr5.4:66852653-66852672 MS.gene94149:intron 15.0%
!!! TCATTTTTTATATAACATTG+AGG + chr5.4:66851895-66851914 None:intergenic 15.0%
!!! TTATTAACACAATTGTTTTT+TGG + chr5.4:66853211-66853230 None:intergenic 15.0%
!! ATATATATATATATAGGGGA+GGG - chr5.4:66852513-66852532 MS.gene94149:intron 20.0%
!! ATATATATATATATATGGGG+AGG + chr5.4:66853407-66853426 None:intergenic 20.0%
!! GATTAAGATAAAATTAAAGG+TGG + chr5.4:66852583-66852602 None:intergenic 20.0%
!! GATTAAGATAAAATTAATGG+TGG - chr5.4:66853336-66853355 MS.gene94149:intron 20.0%
!! TATATATATATATATAGGGG+AGG - chr5.4:66852512-66852531 MS.gene94149:intron 20.0%
!! TATATATATATATATGGGGA+GGG + chr5.4:66853406-66853425 None:intergenic 20.0%
!! TTAAGATAAAATTAATGGTG+GGG - chr5.4:66853338-66853357 MS.gene94149:intron 20.0%
!!! ATCTAATGTTTATTTAGAAC+AGG + chr5.4:66853136-66853155 None:intergenic 20.0%
!!! TCTAATGTTTATTTAGAACA+GGG + chr5.4:66853135-66853154 None:intergenic 20.0%
! AAATATGATCAAGAATTGTG+AGG + chr5.4:66852643-66852662 None:intergenic 25.0%
! AGTCTATTTATATATAAGGG+TGG - chr5.4:66853102-66853121 MS.gene94149:intron 25.0%
! ATAAAAGACACCTTCATAAA+AGG - chr5.4:66852072-66852091 MS.gene94149:CDS 25.0%
! CATATATATTATGTTTGCAG+AGG - chr5.4:66853509-66853528 MS.gene94149:intron 25.0%
! GAATTATCCTTCAAAAAAGT+AGG + chr5.4:66851802-66851821 None:intergenic 25.0%
! TAACTCTTTATAGTTACTCT+TGG - chr5.4:66853369-66853388 MS.gene94149:intron 25.0%
! TTATTGAGACAATCAGTTAT+TGG + chr5.4:66853178-66853197 None:intergenic 25.0%
!! ATGTTGATTGAGTATGAAAA+AGG - chr5.4:66853238-66853257 MS.gene94149:intron 25.0%
!!! ATTCTTTCCTACTTTTTTGA+AGG - chr5.4:66851792-66851811 MS.gene94149:CDS 25.0%
!!! GTGATGTTTTTTACTAACAT+GGG + chr5.4:66852826-66852845 None:intergenic 25.0%
!!! TGTGATGTTTTTTACTAACA+TGG + chr5.4:66852827-66852846 None:intergenic 25.0%
!!! TTTTTTTGACAAAGCATTAC+AGG - chr5.4:66852860-66852879 MS.gene94149:intron 25.0%
AAAGTGAAAATCACACCTTA+AGG + chr5.4:66852286-66852305 None:intergenic 30.0%
ACACCTTCATAAAAAGTAGT+TGG - chr5.4:66851990-66852009 MS.gene94149:CDS 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5.4:66852328-66852347 MS.gene94149:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr5.4:66852134-66852153 MS.gene94149:CDS 30.0%
GAAATGAATGATGCCAAATA+TGG - chr5.4:66853915-66853934 MS.gene94149:intron 30.0%
GAAGTAAATGATGCCAAATA+TGG - chr5.4:66853549-66853568 MS.gene94149:intron 30.0%
TAAAATTAAAGGTGGAGATG+TGG + chr5.4:66852575-66852594 None:intergenic 30.0%
TATAGGGTTATGTTCACAAA+AGG + chr5.4:66852462-66852481 None:intergenic 30.0%
! ATAGAAGACACCTTTTATGA+AGG + chr5.4:66852396-66852415 None:intergenic 30.0%
! ATGTTGATTGAAAGCACAAA+AGG + chr5.4:66852682-66852701 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5.4:66852334-66852353 None:intergenic 30.0%
!! TAACTCTTTAGAGTTACTCT+TGG + chr5.4:66852550-66852569 None:intergenic 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + chr5.4:66852085-66852104 None:intergenic 30.0%
AAAGTGAAAATCACACCTTG+AGG + chr5.4:66852036-66852055 None:intergenic 35.0%
AACTTCCACTGATGCTAAAA+AGG - chr5.4:66851722-66851741 MS.gene94149:CDS 35.0%
ACTTCCACTGATGCTAAAAA+GGG - chr5.4:66851723-66851742 MS.gene94149:CDS 35.0%
ATGAATGATGCCAAATATGG+TGG - chr5.4:66853918-66853937 MS.gene94149:intron 35.0%
CACCTTCATAAAAAGTAGTG+TGG - chr5.4:66851991-66852010 MS.gene94149:CDS 35.0%
GTAAATGATGCCAAATATGG+AGG - chr5.4:66853552-66853571 MS.gene94149:intron 35.0%
TGTTAAAAGACACCACCAAA+GGG + chr5.4:66852256-66852275 None:intergenic 35.0%
TTGTTAAAAGACACCACCAA+AGG + chr5.4:66852257-66852276 None:intergenic 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr5.4:66852468-66852449 None:intergenic 35.0%
! GTTTATTTAGAACAGGGCTT+CGG + chr5.4:66853129-66853148 None:intergenic 35.0%
! TAAAATTAATGGTGGGGATG+TGG - chr5.4:66853344-66853363 MS.gene94149:intron 35.0%
! TTTTAACAAGTCACGCCTTA+AGG - chr5.4:66852268-66852287 MS.gene94149:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - chr5.4:66852018-66852037 MS.gene94149:CDS 35.0%
!! TTTGAGTTTTGTCCTCAGTT+TGG + chr5.4:66854097-66854116 None:intergenic 35.0%
!!! CACCACACTACTTTTTATGA+AGG + chr5.4:66851996-66852015 None:intergenic 35.0%
AAATAAGAGCCATAGCCAAG+AGG + chr5.4:66851671-66851690 None:intergenic 40.0%
AAATATGGAGGCTACAACCA+TGG - chr5.4:66853564-66853583 MS.gene94149:intron 40.0%
AACCATGGTGGTTATAACCA+CGG - chr5.4:66853579-66853598 MS.gene94149:intron 40.0%
AATGATGCCAAATATGGTGG+TGG - chr5.4:66853921-66853940 MS.gene94149:intron 40.0%
AGTTTCAGTTAAGTCCCTAG+CGG + chr5.4:66851706-66851725 None:intergenic 40.0%
ATGGTTGTAGCCTCCATATT+TGG + chr5.4:66853565-66853584 None:intergenic 40.0%
GTAACTACCACCACCATATT+TGG + chr5.4:66853931-66853950 None:intergenic 40.0%
! AATGGTGGAGGTTATAACCA+CGG - chr5.4:66853612-66853631 MS.gene94149:intron 40.0%
! AGTCTTTTCCTCAGTTTGCA+CGG + chr5.4:66853892-66853911 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG - chr5.4:66852238-66852257 MS.gene94149:intron 40.0%
AATCCTCATGCTAAGCCTCT+TGG - chr5.4:66851653-66851672 MS.gene94149:CDS 45.0%
CATGGAGGAAGTTACAACCA+TGG - chr5.4:66853954-66853973 MS.gene94149:intron 45.0%
CATGGTTGTAACTTCCTCCA+TGG + chr5.4:66853956-66853975 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr5.4:66852253-66852272 None:intergenic 45.0%
!! CTCACCCTTTTTAGCATCAG+TGG + chr5.4:66851730-66851749 None:intergenic 45.0%
!! ATATATATATATATATATAG+GGG - chr5.4:66851956-66851975 MS.gene94149:CDS 5.0%
!! TATATATATATATATATATG+GGG + chr5.4:66852235-66852216 None:intergenic 5.0%
CACCGTGGTTATAACCACCA+TGG + chr5.4:66853584-66853603 None:intergenic 50.0%
CATGCTAAGCCTCTTGGCTA+TGG - chr5.4:66851659-66851678 MS.gene94149:CDS 50.0%
CATGGTGGTTATAACCACGG+TGG - chr5.4:66853582-66853601 MS.gene94149:intron 50.0%
CATTGTAACCACCTCCACCA+TGG + chr5.4:66853785-66853804 None:intergenic 50.0%
GGAAGTTACAACCATGGTGG+AGG - chr5.4:66853960-66853979 MS.gene94149:intron 50.0%
GGAGGAAGTTACAACCATGG+TGG - chr5.4:66853957-66853976 MS.gene94149:intron 50.0%
GGAGGAGGTAGTTATCACCA+CGG - chr5.4:66853996-66854015 MS.gene94149:intron 50.0%
GGTGGAGGTAGTTACAACCA+CGG - chr5.4:66853975-66853994 MS.gene94149:intron 50.0%
GGTGGTAGTTACAACCATGG+AGG - chr5.4:66853939-66853958 MS.gene94149:intron 50.0%
GGTTGTAACTACCTCCACCA+TGG + chr5.4:66853974-66853993 None:intergenic 50.0%
TAGCCAAGAGGCTTAGCATG+AGG + chr5.4:66851659-66851678 None:intergenic 50.0%
TATGGAGGCTACAACCATGG+TGG - chr5.4:66853567-66853586 MS.gene94149:intron 50.0%
TGTTACAAGCCACCCTTTGG+TGG - chr5.4:66852241-66852260 MS.gene94149:intron 50.0%
TTCCTCAGTGATGTCCGCTA+GGG - chr5.4:66851689-66851708 MS.gene94149:CDS 50.0%
TTTCCTCAGTGATGTCCGCT+AGG - chr5.4:66851688-66851707 MS.gene94149:CDS 50.0%
! AACCACGGTGGTGGTTACAA+TGG - chr5.4:66853594-66853613 MS.gene94149:intron 50.0%
! AACGGTGGTGGTTACAACCA+TGG - chr5.4:66853666-66853685 MS.gene94149:intron 50.0%
! CATGGTGGAGGTGGTTACAA+CGG - chr5.4:66853648-66853667 MS.gene94149:intron 50.0%
! CATGGTGGAGGTGGTTACAA+TGG - chr5.4:66853648-66853667 MS.gene94149:intron 50.0%
! GGTGGTGGTAGTTACAACCA+TGG - chr5.4:66853936-66853955 MS.gene94149:intron 50.0%
!! AACGGTGGTGGTGGTTACAA+TGG - chr5.4:66853705-66853724 MS.gene94149:intron 50.0%
!! TACAATGGTGGTGGAGGACA+TGG - chr5.4:66853798-66853817 MS.gene94149:intron 50.0%
!! TACAATGGTGGTGGAGGTCA+CGG - chr5.4:66853840-66853859 MS.gene94149:intron 50.0%
AGTTATCACCACGGTGGAGG+TGG - chr5.4:66854005-66854024 MS.gene94149:intron 55.0%
CACCATTGTAACCACCACCG+TGG + chr5.4:66853599-66853618 None:intergenic 55.0%
CACGGTGGAGGTTACAACCA+TGG - chr5.4:66853630-66853649 MS.gene94149:intron 55.0%
CATGGTTGTAACCTCCACCG+TGG + chr5.4:66853632-66853651 None:intergenic 55.0%
CGTTGTAACCACCTCCACCA+TGG + chr5.4:66853650-66853669 None:intergenic 55.0%
GGAGGTAGTTACAACCACGG+AGG - chr5.4:66853978-66853997 MS.gene94149:intron 55.0%
GGAGGTAGTTATCACCACGG+TGG - chr5.4:66853999-66854018 MS.gene94149:intron 55.0%
GGAGGTGGTTACAACCATGG+TGG - chr5.4:66853768-66853787 MS.gene94149:intron 55.0%
GGAGGTGGTTACAATGGTGG+TGG - chr5.4:66853789-66853808 MS.gene94149:intron 55.0%
GGAGGTTACAACCATGGTGG+AGG - chr5.4:66853636-66853655 MS.gene94149:intron 55.0%
GGAGGTTATAACCACGGTGG+AGG - chr5.4:66853618-66853637 MS.gene94149:intron 55.0%
GGTAGTTACAACCACGGAGG+AGG - chr5.4:66853981-66854000 MS.gene94149:intron 55.0%
GGTAGTTATCACCACGGTGG+AGG - chr5.4:66854002-66854021 MS.gene94149:intron 55.0%
GGTGATAACTACCTCCTCCG+TGG + chr5.4:66853995-66854014 None:intergenic 55.0%
GGTGGAGGTGGTTACAACCA+CGG - chr5.4:66853765-66853784 MS.gene94149:intron 55.0%
GGTGGAGGTGGTTACAACCA+TGG - chr5.4:66853765-66853784 MS.gene94149:intron 55.0%
GGTGGAGGTGGTTACAATGG+TGG - chr5.4:66853786-66853805 MS.gene94149:intron 55.0%
GGTGGAGGTGGTTACCACAA+CGG - chr5.4:66853687-66853706 MS.gene94149:intron 55.0%
GGTGGAGGTTACAACCATGG+TGG - chr5.4:66853633-66853652 MS.gene94149:intron 55.0%
GGTGGAGGTTATAACCACGG+TGG - chr5.4:66853615-66853634 MS.gene94149:intron 55.0%
GGTGGTTACAACCATGGTGG+AGG - chr5.4:66853672-66853691 MS.gene94149:intron 55.0%
GGTGGTTATAACCACGGTGG+TGG - chr5.4:66853585-66853604 MS.gene94149:intron 55.0%
GTCTGTTGCCGTGCAAACTG+AGG - chr5.4:66853881-66853900 MS.gene94149:intron 55.0%
TGTAACCACCACCACCGTTG+TGG + chr5.4:66853704-66853723 None:intergenic 55.0%
TGTGGTAACCACCTCCACCA+TGG + chr5.4:66853686-66853705 None:intergenic 55.0%
! AACGGTGGCGGTGGATACAA+TGG - chr5.4:66853744-66853763 MS.gene94149:intron 55.0%
! CACGGTGGTGGTTACAATGG+TGG - chr5.4:66853597-66853616 MS.gene94149:intron 55.0%
! GGTGGATACAATGGTGGAGG+TGG - chr5.4:66853753-66853772 MS.gene94149:intron 55.0%
! GGTGGTGGTTACAACCATGG+TGG - chr5.4:66853669-66853688 MS.gene94149:intron 55.0%
! GGTGGTGGTTACAATGGTGG+AGG - chr5.4:66853600-66853619 MS.gene94149:intron 55.0%
! GGTGGTTACAATGGTGGAGG+TGG - chr5.4:66853603-66853622 MS.gene94149:intron 55.0%
! GGTTACAACCATGGTGGAGG+TGG - chr5.4:66853639-66853658 MS.gene94149:intron 55.0%
!! AATGGTGGTGGAGGACATGG+TGG - chr5.4:66853801-66853820 MS.gene94149:intron 55.0%
!! GGTGGTGGTGGTTACAATGG+TGG - chr5.4:66853708-66853727 MS.gene94149:intron 55.0%
!! GGTGGTTACAATGGTGGTGG+AGG - chr5.4:66853792-66853811 MS.gene94149:intron 55.0%
AACCACGGTGGAGGTGGTCA+CGG - chr5.4:66854032-66854051 MS.gene94149:CDS 60.0%
CCTCAGTTTGGTCAGCACCG+TGG + chr5.4:66854085-66854104 None:intergenic 60.0%
GGACATGGTGGTCATGGTGG+AGG - chr5.4:66853813-66853832 MS.gene94149:intron 60.0%
GGAGGACATGGTGGTCATGG+TGG - chr5.4:66853810-66853829 MS.gene94149:intron 60.0%
GGAGGTGGTTACAACCACGG+TGG - chr5.4:66854020-66854039 MS.gene94149:CDS 60.0%
GGAGGTGGTTACAACGGTGG+TGG - chr5.4:66853654-66853673 MS.gene94149:intron 60.0%
GGAGGTGGTTACCACAACGG+TGG - chr5.4:66853690-66853709 MS.gene94149:intron 60.0%
GGCGGTGGATACAATGGTGG+AGG - chr5.4:66853750-66853769 MS.gene94149:intron 60.0%
GGTGGAGGACATGGTGGTCA+TGG - chr5.4:66853807-66853826 MS.gene94149:intron 60.0%
GGTGGAGGTGGTTACAACGG+TGG - chr5.4:66853651-66853670 MS.gene94149:intron 60.0%
GGTGGTTACAACCACGGTGG+AGG - chr5.4:66854023-66854042 MS.gene94149:CDS 60.0%
GGTGGTTACCACAACGGTGG+CGG - chr5.4:66853693-66853712 MS.gene94149:intron 60.0%
GGTGGTTACCACAACGGTGG+TGG - chr5.4:66853693-66853712 MS.gene94149:intron 60.0%
GGTTACAACCACGGTGGAGG+TGG - chr5.4:66854026-66854045 MS.gene94149:CDS 60.0%
GGTTGTAACCACCTCCACCG+TGG + chr5.4:66854016-66854035 None:intergenic 60.0%
TGTATCCACCGCCACCGTTG+TGG + chr5.4:66853743-66853762 None:intergenic 60.0%
! CATGGTGGTCATGGTGGAGG+TGG - chr5.4:66853816-66853835 MS.gene94149:intron 60.0%
! GGTGGCGGTGGATACAATGG+TGG - chr5.4:66853747-66853766 MS.gene94149:intron 60.0%
! GGTTACCACAACGGTGGTGG+TGG - chr5.4:66853696-66853715 MS.gene94149:intron 60.0%
! GTCCCTAGCGGACATCACTG+AGG + chr5.4:66851694-66851713 None:intergenic 60.0%
!! AATGGTGGTGGAGGTCACGG+TGG - chr5.4:66853843-66853862 MS.gene94149:intron 60.0%
!! CCACGGTGCTGACCAAACTG+AGG - chr5.4:66854082-66854101 MS.gene94149:CDS 60.0%
GGACACGGTGGAGGTGGTCA+CGG - chr5.4:66854056-66854075 MS.gene94149:CDS 65.0%
GGAGGTCACGGTGGTCATGG+CGG - chr5.4:66853852-66853871 MS.gene94149:intron 65.0%
GGAGGTGGTCACGGTGGACA+CGG - chr5.4:66854041-66854060 MS.gene94149:CDS 65.0%
GGTGGAGGTCACGGTGGTCA+TGG - chr5.4:66853849-66853868 MS.gene94149:intron 65.0%
! GGTTACCACAACGGTGGCGG+TGG - chr5.4:66853735-66853754 MS.gene94149:intron 65.0%
CACCGTGACCACCTCCACCG+TGG + chr5.4:66854037-66854056 None:intergenic 70.0%
CACGGTGGACACGGTGGAGG+TGG - chr5.4:66854050-66854069 MS.gene94149:CDS 70.0%
CACGGTGGAGGTGGTCACGG+TGG - chr5.4:66854035-66854054 MS.gene94149:CDS 70.0%
GGAGGTGGTCACGGTGGCCA+CGG - chr5.4:66854065-66854084 MS.gene94149:CDS 70.0%
GGTCACGGTGGACACGGTGG+AGG - chr5.4:66854047-66854066 MS.gene94149:CDS 70.0%
GGTGGTCACGGTGGACACGG+TGG - chr5.4:66854044-66854063 MS.gene94149:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 66851636 66854121 66851636 ID=MS.gene94149
chr5.4 mRNA 66851636 66854121 66851636 ID=MS.gene94149.t1;Parent=MS.gene94149
chr5.4 exon 66854013 66854121 66854013 ID=MS.gene94149.t1.exon1;Parent=MS.gene94149.t1
chr5.4 CDS 66854013 66854121 66854013 ID=cds.MS.gene94149.t1;Parent=MS.gene94149.t1
chr5.4 exon 66851636 66852228 66851636 ID=MS.gene94149.t1.exon2;Parent=MS.gene94149.t1
chr5.4 CDS 66851636 66852228 66851636 ID=cds.MS.gene94149.t1;Parent=MS.gene94149.t1
Gene Sequence

>MS.gene94149

ATGGATTCAAAAAAGGCAATCCTCATGCTAAGCCTCTTGGCTATGGCTCTTATTTCCTCAGTGATGTCCGCTAGGGACTTAACTGAAACTTCCACTGATGCTAAAAAGGGTGAGCTATATATTATGTTTTCATGAGCGTTTTAGATACGTGTTTTAATTCTTTCCTACTTTTTTGAAGGATAATTCTTTAATACTTAATTATATATTTTATGCATTTTAATTAATTCTTTTCTATGTAAATGTTAATCTTCATGCACCTCAATGTTATATAAAAAATGATTTCAAATTTGCTTCATAAAGTACAAAGATGATCAAAATATATATATATATATATATATAGGGTTATGTTACAAGACACCTTCATAAAAAGTAGTGTGGTGTCTTTTATCAAGTCACACCTCAAGGTGTGATTTTCACTTTTTTAGTTATAACTTTGATAAAAGACACCTTCATAAAAAGTAGTTGGTGTCTTTTAACAAATGCTCATAGAGTAACTTGATAAAAGACACCTTCACAAAAGGTGTCTTCTATCATAACCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGGTTTTGTTACAAGCCACCCTTTGGTGGTGTCTTTTAACAAGTCACGCCTTAAGGTGTGATTTTCACTTTTTAATTATAACTTTGCTAAAAGACACCTTCATAAAAGTAAGTTGGTGTCTTTTCGCAAATGCTCATAGAGTAACTTGATAAAAGACACCTTCATAAAAGGTGTCTTCTATCATAACCCTATATATATATATATATGGGTTATGATAGAAGACACCTTTTGTGAACATAACCCTATATATATATATATATATATATATATATATATATATATATATATATATAGGGGAGGGATATATTGACTCCAAGAGTAACTCTAAAGAGTTACTCCACATCTCCACCTTTAATTTTATCTTAATCTAATGGATTACATTTAAGTTTTATCAATAATCATGTACCTCACAATTCTTGATCATATTTTAACAATATTAGGTTTCCTTTTGTGCTTTCAATCAACATTTATGTTTCATTAACACAATTAATAATTGGTAACAAGAAATTATTTGTATGTTTCATAAATGTTTTTTTAGAACAAAATTCAAATATTAAACTATGATCAAAGTTCTTTTAAAAAAAAAAACCCATGTTAGTAAAAAACATCACACTTATTTTTTTATTTTTTTTGACAAAGCATTACAGGTATATTTAAATACAACTTTTTTTAATACACTGATAAAATAAAAATTAATAAAAATATATATACATTTTTTATAGAAAAAAGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATTTGTATTAATTATTTTTTTATCAATTTATATTTGTATAAATATATATACTTAAAAACAATTTATTTAATATAGTCTATTTATATATAAGGGTGGACCGAAGCCCTGTTCTAAATAAACATTAGATGAAATGTAATTTTTTTTCACCAATAACTGATTGTCTCAATAAAACATCTTGACCAAAAAACAATTGTGTTAATAAAACATAAATGTTGATTGAGTATGAAAAAGGAAAATTAAATATTGTTAGAATGATCAAGTATGATGATGCACATGATTATTAATAAGACATAAATGTAGTCCATTAGATTAAGATAAAATTAATGGTGGGGATGTGGAGTAACTCTTTATAGTTACTCTTGGAGTCAAAATATCCCTCCCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATTTATATTTAAGGTAATCATTTAATTATTCATATATATTATGTTTGCAGAGGTTGTTGAAAAGACTAATGAAGTAAATGATGCCAAATATGGAGGCTACAACCATGGTGGTTATAACCACGGTGGTGGTTACAATGGTGGAGGTTATAACCACGGTGGAGGTTACAACCATGGTGGAGGTGGTTACAACGGTGGTGGTTACAACCATGGTGGAGGTGGTTACCACAACGGTGGTGGTGGTTACAATGGTGGAGGTGGTTACCACAACGGTGGCGGTGGATACAATGGTGGAGGTGGTTACAACCATGGTGGAGGTGGTTACAATGGTGGTGGAGGACATGGTGGTCATGGTGGAGGTGGTTACAATGGTGGTGGAGGTCACGGTGGTCATGGCGGTGCTGAGTCTGTTGCCGTGCAAACTGAGGAAAAGACTAATGAAATGAATGATGCCAAATATGGTGGTGGTAGTTACAACCATGGAGGAAGTTACAACCATGGTGGAGGTAGTTACAACCACGGAGGAGGTAGTTATCACCACGGTGGAGGTGGTTACAACCACGGTGGAGGTGGTCACGGTGGACACGGTGGAGGTGGTCACGGTGGCCACGGTGCTGACCAAACTGAGGACAAAACTCAAAATTAA

Protein sequence

>MS.gene94149.t1

MDSKKAILMLSLLAMALISSVMSARDLTETSTDAKKEVVEKTNEVNDAKYGGYNHGGYNHGGGYNGGGYNHGGGYNHGGGGYNGGGYNHGGGGYHNGGGGYNGGGGYHNGGGGYNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGHGGHGGAESVAVQTEEKTNEMNDAKYGGGSYNHGGSYNHGGGSYNHGGGSYHHGGGGYNHGGGGHGGHGGGGHGGHGADQTEDKTQN