AlfalfaGEDB | MS.gene95147

M. sativa cultivar XinJiangDaYe / MS.gene95147

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95147.t1	XP_003610518.1	88.5	209	12	3	3	210	4	201	3.90E-75	291.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95147.t1	G7JKI8	88.5	209	12	3	3	210	4	201	2.8e-75	291.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049297	MS.gene95147	0.812564	3.98E-51	-1.69E-46
MS.gene049378	MS.gene95147	0.819484	1.13E-52	-1.69E-46
MS.gene049758	MS.gene95147	0.868694	5.40E-66	-1.69E-46
MS.gene049915	MS.gene95147	0.814776	1.30E-51	-1.69E-46
MS.gene050226	MS.gene95147	0.805912	1.06E-49	-1.69E-46
MS.gene050227	MS.gene95147	0.817793	2.74E-52	-1.69E-46
MS.gene050301	MS.gene95147	0.832861	7.42E-56	-1.69E-46
MS.gene050330	MS.gene95147	-0.840449	8.64E-58	-1.69E-46
MS.gene050558	MS.gene95147	0.80778	4.28E-50	-1.69E-46
MS.gene050623	MS.gene95147	-0.82357	1.29E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95147.t1	MTR_4g133070	89.474	209	10	3	3	210	4	201	3.36e-108	309

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95147.t1	AT5G20130	50.867	173	79	3	39	210	35	202	4.68e-41	139
MS.gene95147.t1	AT5G20130	50.867	173	79	3	39	210	64	231	2.67e-40	137

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Find 54 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACGAGAAGAGCTGGG+AGG	0.769117	8.2:+1302323	MS.gene95147:CDS
AACGATGGCGTGACCTGATT+AGG	0.420437	8.2:-1301279	None:intergenic
AAGAGAGCGTTGTAAGAAAA+TGG	0.252399	8.2:+1302775	MS.gene95147:CDS
AATCAAAAGACGAGAAGAGC+TGG	0.418830	8.2:+1302319	MS.gene95147:CDS
ACCTGATTAGGATTGAATAC+GGG	0.620878	8.2:-1301267	None:intergenic
AGAAAATTGAATTTGACAAG+TGG	0.484614	8.2:+1302288	MS.gene95147:CDS
AGACGAGAAGAGCTGGGAGG+CGG	0.517079	8.2:+1302326	MS.gene95147:CDS
AGAGAGCGTTGTAAGAAAAT+GGG	0.401097	8.2:+1302776	MS.gene95147:CDS
AGAGGCATGTGAATCTGCTT+CGG	0.520608	8.2:-1301378	None:intergenic
ATACAGCAATGGATTGATGA+TGG	0.635518	8.2:-1302625	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTACTACAATACTCGCT+TGG	-	chr8.2:1301565-1301584	None:intergenic	30.0%
ACTGCAAATAAAGAGAGATA+AGG	-	chr8.2:1302569-1302588	None:intergenic	30.0%
ACTTATAGTTTCATTTCCCT+CGG	-	chr8.2:1302213-1302232	None:intergenic	30.0%
ATTTATAGTCTCAGATATGG+GGG	+	chr8.2:1302149-1302168	MS.gene95147:intron	30.0%
CAAACAAGTTCAGTTAAGAA+AGG	-	chr8.2:1301906-1301925	None:intergenic	30.0%
CATTTATAGTCTCAGATATG+GGG	+	chr8.2:1302148-1302167	MS.gene95147:intron	30.0%
GCATTTATAGTCTCAGATAT+GGG	+	chr8.2:1302147-1302166	MS.gene95147:intron	30.0%
TATAAGTGAATTCTGATTGC+AGG	+	chr8.2:1302226-1302245	MS.gene95147:intron	30.0%
AAAGATCAGCATTGCATTCT+AGG	-	chr8.2:1301843-1301862	None:intergenic	35.0%
AATACTCGCTTGGTTATTGT+TGG	-	chr8.2:1301555-1301574	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	1301241	1302809	1301241	ID=MS.gene95147
chr8.2	mRNA	1301241	1302809	1301241	ID=MS.gene95147.t1;Parent=MS.gene95147
chr8.2	exon	1301241	1301423	1301241	ID=MS.gene95147.t1.exon1;Parent=MS.gene95147.t1
chr8.2	CDS	1301241	1301423	1301241	ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1
chr8.2	exon	1302248	1302475	1302248	ID=MS.gene95147.t1.exon2;Parent=MS.gene95147.t1
chr8.2	CDS	1302248	1302475	1302248	ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1
chr8.2	exon	1302588	1302809	1302588	ID=MS.gene95147.t1.exon3;Parent=MS.gene95147.t1
chr8.2	CDS	1302588	1302809	1302588	ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1

Gene Sequence

>MS.gene95147

ATGGAAATTGTAAACCTAGGAGGAGTCCCGTATTCAATCCTAATCAGGTCACGCCATCGTTCCCAATTGACGACTAAGCAGCTCGACTCTTCCGTTGATGAAAAATGGAGTCGCTTACAGCACAAACTCAACACCAACCGAAGCAGATTCACATGCCTCTTCTCAGACAACAACAAAAGAGAGGTAGGTACCTATTTCATATTCATTCATTCATTCGCATATATCAATTTAATAACCCAACTTCAGTTTTATTTTTTGTTGCTACTAATATTCAATCCTTTCACTGCCTGCATAATTTGCCTTATCCCTAGCCAACAATAACCAAGCGAGTATTGTAGTAATTTGTAGTAGCATTTCATGGATTGTTTGTTCCTCATAGCAATTCATTTCTTTATGATTAGAACGAACCTACTCTCCTACTATGTTGATTTTGTGATTTCTGACCTCTCTATTTATAATAGCATATAGAACCGAATATAATAAGATACAACTTTCTTATTTAAATCCTAATTTATTTATGATTCCAATCCTAATAATAAATATATGGATTTCATTCTAACACTTTCTACATGCAATTTACTGTCACACGAGAAGGTAATCCTAGAATGCAATGCTGATCTTTATTTTCTTTTCCTTTACAGATAGATAATCTTTGGAAAATACCTTTCTTAACTGAACTTGTTTGGTTTGTTATTTATCTTAATTTATTTTGTTGGCCTCCTAATGTAGAACATATTTAATTTAATTTTCATGATACTAGCAAAATTGTATCATGCACTTTAGTTTGCAAAAGACAAAAATAATTCTCAATATAGTCTCTGATCTAATTTTGGGGTCATGATCAGTTATCCATAGAAATTAATTTATCACTGAAATATATTTCATATCTTGTGATGATGATGAGCCGCATTTATAGTCTCAGATATGGGGGAATTAAGTGGGAAGAAAATTGAATTTGAGAAGTGAGTTCCGAGGGAAATGAAACTATAAGTGAATTCTGATTGCAGGATCAAGCTAGAAAAGCATTAGAAGGTGCATTAAGTGGGAAGAAAATTGAATTTGACAAGTGGGACAAAGAAATCAAAAGACGAGAAGAGCTGGGAGGCGGAGGTGACAGCGGCGGTGGTGGAGGAGGTTGGTTTGGGTGGGGTAGATGGTTTGGCTGGTCTAATGATGATAACTTTTGGCAAGAAGCAAAACAAGCTAGTCTTACTGTACTTGGCATCGTTCTCATAGTAAGAAATTTTCTCATACTACTCTCAATTCTTTTGCTGCAAGTTCAAAACTAATTAATATTATTATTATAAAATAAAAAAACTATTTTACCTTATCTCTCTTTATTTGCAGTATATCCTAGTTGCAAAAGGTGATTTGATCCTCGTTGCCATCATCAATCCATTGCTGTATGCACTTCGGGGAGTGAGAAATGGATTTGGTCTCGCAACATCACAAGTCTTGAAAAATACTTCTAACGGTGATCAGCCTGATTTTGATGGCTCTTTGAAGAAGGAAGGCTATAAAAGTGCTTCTGCTAAAGAGAGCGTTGTAAGAAAATGGGGTAGTGATTAG

Protein sequence

>MS.gene95147.t1

MEIVNLGGVPYSILIRSRHRSQLTTKQLDSSVDEKWSRLQHKLNTNRSRFTCLFSDNNKREDQARKALEGALSGKKIEFDKWDKEIKRREELGGGGDSGGGGGGWFGWGRWFGWSNDDNFWQEAKQASLTVLGIVLIYILVAKGDLILVAIINPLLYALRGVRNGFGLATSQVLKNTSNGDQPDFDGSLKKEGYKSASAKESVVRKWGSD