Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95147.t1 | XP_003610518.1 | 88.5 | 209 | 12 | 3 | 3 | 210 | 4 | 201 | 3.90E-75 | 291.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95147.t1 | G7JKI8 | 88.5 | 209 | 12 | 3 | 3 | 210 | 4 | 201 | 2.8e-75 | 291.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene95147 | 0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene95147 | 0.819484 | 1.13E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene95147 | 0.868694 | 5.40E-66 | -1.69E-46 |
| MS.gene049915 | MS.gene95147 | 0.814776 | 1.30E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene95147 | 0.805912 | 1.06E-49 | -1.69E-46 |
| MS.gene050227 | MS.gene95147 | 0.817793 | 2.74E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene95147 | 0.832861 | 7.42E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene95147 | -0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene050558 | MS.gene95147 | 0.80778 | 4.28E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene95147 | -0.82357 | 1.29E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene95147 | 0.830362 | 3.07E-55 | -1.69E-46 |
| MS.gene05119 | MS.gene95147 | -0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene95147 | 0.806864 | 6.69E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene95147 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene95147 | 0.800772 | 1.23E-48 | -1.69E-46 |
| MS.gene051983 | MS.gene95147 | 0.81838 | 2.02E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene95147 | 0.808777 | 2.62E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene95147 | 0.826908 | 2.10E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene95147 | 0.824826 | 6.54E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene95147 | 0.813171 | 2.93E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene95147 | -0.813799 | 2.13E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene95147 | 0.80848 | 3.03E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene95147 | 0.812526 | 4.06E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene95147 | 0.806984 | 6.31E-50 | -1.69E-46 |
| MS.gene053577 | MS.gene95147 | 0.804502 | 2.09E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene95147 | 0.863767 | 1.97E-64 | -1.69E-46 |
| MS.gene054473 | MS.gene95147 | 0.807164 | 5.78E-50 | -1.69E-46 |
| MS.gene054542 | MS.gene95147 | 0.820011 | 8.59E-53 | -1.69E-46 |
| MS.gene054667 | MS.gene95147 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene95147 | 0.843396 | 1.44E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene95147 | 0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene95147 | 0.800146 | 1.65E-48 | -1.69E-46 |
| MS.gene055422 | MS.gene95147 | 0.853066 | 3.06E-61 | -1.69E-46 |
| MS.gene055428 | MS.gene95147 | 0.832617 | 8.53E-56 | -1.69E-46 |
| MS.gene056069 | MS.gene95147 | -0.831921 | 1.27E-55 | -1.69E-46 |
| MS.gene056314 | MS.gene95147 | 0.836418 | 9.47E-57 | -1.69E-46 |
| MS.gene056612 | MS.gene95147 | 0.808349 | 3.23E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene95147 | 0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene95147 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene95147 | 0.807928 | 3.98E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene95147 | 0.819964 | 8.81E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene95147 | 0.805091 | 1.58E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene95147 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene95147 | 0.820533 | 6.52E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene95147 | 0.817479 | 3.23E-52 | -1.69E-46 |
| MS.gene058182 | MS.gene95147 | 0.816547 | 5.23E-52 | -1.69E-46 |
| MS.gene058661 | MS.gene95147 | -0.807167 | 5.77E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene95147 | 0.805207 | 1.49E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene95147 | 0.802165 | 6.38E-49 | -1.69E-46 |
| MS.gene058833 | MS.gene95147 | 0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene95147 | 0.834107 | 3.63E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene95147 | 0.810508 | 1.11E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene95147 | 0.855342 | 6.73E-62 | -1.69E-46 |
| MS.gene059894 | MS.gene95147 | 0.843056 | 1.77E-58 | -1.69E-46 |
| MS.gene059899 | MS.gene95147 | 0.839491 | 1.53E-57 | -1.69E-46 |
| MS.gene060476 | MS.gene95147 | 0.825244 | 5.21E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene95147 | 0.841135 | 5.71E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95147.t1 | MTR_4g133070 | 89.474 | 209 | 10 | 3 | 3 | 210 | 4 | 201 | 3.36e-108 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95147.t1 | AT5G20130 | 50.867 | 173 | 79 | 3 | 39 | 210 | 35 | 202 | 4.68e-41 | 139 |
| MS.gene95147.t1 | AT5G20130 | 50.867 | 173 | 79 | 3 | 39 | 210 | 64 | 231 | 2.67e-40 | 137 |
Find 54 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTTTGGGTGGGGTAGA+TGG | 0.204366 | 8.2:+1302375 | MS.gene95147:CDS |
| GTGGAGGAGGTTGGTTTGGG+TGG | 0.232183 | 8.2:+1302366 | MS.gene95147:CDS |
| AAGAGAGCGTTGTAAGAAAA+TGG | 0.252399 | 8.2:+1302775 | MS.gene95147:CDS |
| TCCATTGCTGTATGCACTTC+GGG | 0.261348 | 8.2:+1302635 | MS.gene95147:CDS |
| GGTGGTGGAGGAGGTTGGTT+TGG | 0.317412 | 8.2:+1302362 | MS.gene95147:CDS |
| TGGAGGAGGTTGGTTTGGGT+GGG | 0.343284 | 8.2:+1302367 | MS.gene95147:CDS |
| GGAGGAGGTTGGTTTGGGTG+GGG | 0.346451 | 8.2:+1302368 | MS.gene95147:CDS |
| GGTCTAATGATGATAACTTT+TGG | 0.359719 | 8.2:+1302405 | MS.gene95147:CDS |
| GTGGTGGAGGAGGTTGGTTT+GGG | 0.360540 | 8.2:+1302363 | MS.gene95147:CDS |
| TTTGGGTGGGGTAGATGGTT+TGG | 0.362531 | 8.2:+1302380 | MS.gene95147:CDS |
| CGAGCTGCTTAGTCGTCAAT+TGG | 0.372187 | 8.2:-1301303 | None:intergenic |
| GGCGGAGGTGACAGCGGCGG+TGG | 0.378593 | 8.2:+1302344 | MS.gene95147:CDS |
| TTCAAAGAGCCATCAAAATC+AGG | 0.393603 | 8.2:-1302723 | None:intergenic |
| AGAGAGCGTTGTAAGAAAAT+GGG | 0.401097 | 8.2:+1302776 | MS.gene95147:CDS |
| GGTGACAGCGGCGGTGGTGG+AGG | 0.405478 | 8.2:+1302350 | MS.gene95147:CDS |
| CGGGGAGTGAGAAATGGATT+TGG | 0.413388 | 8.2:+1302654 | MS.gene95147:CDS |
| CAAGCTAGTCTTACTGTACT+TGG | 0.415635 | 8.2:+1302440 | MS.gene95147:CDS |
| AATCAAAAGACGAGAAGAGC+TGG | 0.418830 | 8.2:+1302319 | MS.gene95147:CDS |
| AACGATGGCGTGACCTGATT+AGG | 0.420437 | 8.2:-1301279 | None:intergenic |
| GACAGCGGCGGTGGTGGAGG+AGG | 0.424291 | 8.2:+1302353 | MS.gene95147:CDS |
| GGAGGTGACAGCGGCGGTGG+TGG | 0.433329 | 8.2:+1302347 | MS.gene95147:CDS |
| TCCCGTATTCAATCCTAATC+AGG | 0.439070 | 8.2:+1301266 | MS.gene95147:CDS |
| CGAGAAGAGCTGGGAGGCGG+AGG | 0.440547 | 8.2:+1302329 | MS.gene95147:CDS |
| GCACTTCGGGGAGTGAGAAA+TGG | 0.464500 | 8.2:+1302648 | MS.gene95147:CDS |
| GCGGCGGTGGTGGAGGAGGT+TGG | 0.468919 | 8.2:+1302357 | MS.gene95147:CDS |
| CAAGCTAGAAAAGCATTAGA+AGG | 0.475399 | 8.2:+1302251 | MS.gene95147:CDS |
| GGTGGGGTAGATGGTTTGGC+TGG | 0.477513 | 8.2:+1302384 | MS.gene95147:CDS |
| AGAAAATTGAATTTGACAAG+TGG | 0.484614 | 8.2:+1302288 | MS.gene95147:CDS |
| ATCCATTGCTGTATGCACTT+CGG | 0.485612 | 8.2:+1302634 | MS.gene95147:CDS |
| CAGTATATCCTAGTTGCAAA+AGG | 0.489427 | 8.2:+1302585 | MS.gene95147:intron |
| TTGAATACGGGACTCCTCCT+AGG | 0.496159 | 8.2:-1301255 | None:intergenic |
| GACCTGATTAGGATTGAATA+CGG | 0.498106 | 8.2:-1301268 | None:intergenic |
| GAAAATTGAATTTGACAAGT+GGG | 0.514902 | 8.2:+1302289 | MS.gene95147:CDS |
| GAGCTGCTTAGTCGTCAATT+GGG | 0.516872 | 8.2:-1301302 | None:intergenic |
| AGACGAGAAGAGCTGGGAGG+CGG | 0.517079 | 8.2:+1302326 | MS.gene95147:CDS |
| AGAGGCATGTGAATCTGCTT+CGG | 0.520608 | 8.2:-1301378 | None:intergenic |
| GCATTAGAAGGTGCATTAAG+TGG | 0.523555 | 8.2:+1302263 | MS.gene95147:CDS |
| GATGGCTCTTTGAAGAAGGA+AGG | 0.548351 | 8.2:+1302732 | MS.gene95147:CDS |
| GAGAGCGTTGTAAGAAAATG+GGG | 0.569827 | 8.2:+1302777 | MS.gene95147:CDS |
| CTGGGAGGCGGAGGTGACAG+CGG | 0.571119 | 8.2:+1302338 | MS.gene95147:CDS |
| ATCAAAAGACGAGAAGAGCT+GGG | 0.583730 | 8.2:+1302320 | MS.gene95147:CDS |
| CATTAGAAGGTGCATTAAGT+GGG | 0.584288 | 8.2:+1302264 | MS.gene95147:CDS |
| CCCCGAAGTGCATACAGCAA+TGG | 0.590470 | 8.2:-1302636 | None:intergenic |
| GGAGGCGGAGGTGACAGCGG+CGG | 0.605565 | 8.2:+1302341 | MS.gene95147:CDS |
| GGAATGGAAATTGTAAACCT+AGG | 0.606359 | 8.2:+1301238 | None:intergenic |
| ACCTGATTAGGATTGAATAC+GGG | 0.620878 | 8.2:-1301267 | None:intergenic |
| GCATGTGAATCTGCTTCGGT+TGG | 0.624681 | 8.2:-1301374 | None:intergenic |
| ATGGAAATTGTAAACCTAGG+AGG | 0.633667 | 8.2:+1301241 | MS.gene95147:CDS |
| ATACAGCAATGGATTGATGA+TGG | 0.635518 | 8.2:-1302625 | None:intergenic |
| CTCAGACAACAACAAAAGAG+AGG | 0.641852 | 8.2:+1301402 | MS.gene95147:CDS |
| TAGTCGTCAATTGGGAACGA+TGG | 0.645640 | 8.2:-1301294 | None:intergenic |
| CCATTGCTGTATGCACTTCG+GGG | 0.665878 | 8.2:+1302636 | MS.gene95147:CDS |
| ATGGATTGATGATGGCAACG+AGG | 0.743753 | 8.2:-1302617 | None:intergenic |
| AAAAGACGAGAAGAGCTGGG+AGG | 0.769117 | 8.2:+1302323 | MS.gene95147:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCATATATTTATTATT+AGG | - | chr8.2:1301772-1301791 | None:intergenic | 10.0% |
| !!! | TTTATCTTAATTTATTTTGT+TGG | + | chr8.2:1301934-1301953 | MS.gene95147:intron | 10.0% |
| !! | AAGTTGTATCTTATTATATT+CGG | - | chr8.2:1301714-1301733 | None:intergenic | 15.0% |
| !! | AATTAAATATGTTCTACATT+AGG | - | chr8.2:1301963-1301982 | None:intergenic | 15.0% |
| !! | ATTGGAATCATAAATAAATT+AGG | - | chr8.2:1301749-1301768 | None:intergenic | 15.0% |
| !! | CAATCCTAATAATAAATATA+TGG | + | chr8.2:1301765-1301784 | MS.gene95147:intron | 15.0% |
| !! | CATATATTTATTATTAGGAT+TGG | - | chr8.2:1301767-1301786 | None:intergenic | 15.0% |
| !! | ACAAAAAATAAAACTGAAGT+TGG | - | chr8.2:1301480-1301499 | None:intergenic | 20.0% |
| !! | ATATGCTATTATAAATAGAG+AGG | - | chr8.2:1301687-1301706 | None:intergenic | 20.0% |
| !! | CAAAAAATAAAACTGAAGTT+GGG | - | chr8.2:1301479-1301498 | None:intergenic | 20.0% |
| !! | CAGTGATAAATTAATTTCTA+TGG | - | chr8.2:1302093-1302112 | None:intergenic | 20.0% |
| !! | TGAATGAATGAATATGAAAT+AGG | - | chr8.2:1301434-1301453 | None:intergenic | 20.0% |
| ! | AATCACAAAATCAACATAGT+AGG | - | chr8.2:1301659-1301678 | None:intergenic | 25.0% |
| ! | AGAAAATTGAATTTGACAAG+TGG | + | chr8.2:1302288-1302307 | MS.gene95147:CDS | 25.0% |
| ! | CAAAGATTATCTATCTGTAA+AGG | - | chr8.2:1301876-1301895 | None:intergenic | 25.0% |
| ! | CTTTACAGATAGATAATCTT+TGG | + | chr8.2:1301874-1301893 | MS.gene95147:intron | 25.0% |
| ! | GAAAATTGAATTTGACAAGT+GGG | + | chr8.2:1302289-1302308 | MS.gene95147:CDS | 25.0% |
| ! | GTCTTGAAAAATACTTCTAA+CGG | + | chr8.2:1302693-1302712 | MS.gene95147:CDS | 25.0% |
| ! | TAAAGAAATGAATTGCTATG+AGG | - | chr8.2:1301615-1301634 | None:intergenic | 25.0% |
| ! | TAAATATGTTCTACATTAGG+AGG | - | chr8.2:1301960-1301979 | None:intergenic | 25.0% |
| !! | ATAGTCTCTGATCTAATTTT+GGG | + | chr8.2:1302052-1302071 | MS.gene95147:intron | 25.0% |
| !! | TAATTTGTAGTAGCATTTCA+TGG | + | chr8.2:1301579-1301598 | MS.gene95147:intron | 25.0% |
| !! | TATAGTCTCTGATCTAATTT+TGG | + | chr8.2:1302051-1302070 | MS.gene95147:intron | 25.0% |
| AAATTACTACAATACTCGCT+TGG | - | chr8.2:1301565-1301584 | None:intergenic | 30.0% | |
| ACTGCAAATAAAGAGAGATA+AGG | - | chr8.2:1302569-1302588 | None:intergenic | 30.0% | |
| ACTTATAGTTTCATTTCCCT+CGG | - | chr8.2:1302213-1302232 | None:intergenic | 30.0% | |
| ATTTATAGTCTCAGATATGG+GGG | + | chr8.2:1302149-1302168 | MS.gene95147:intron | 30.0% | |
| CAAACAAGTTCAGTTAAGAA+AGG | - | chr8.2:1301906-1301925 | None:intergenic | 30.0% | |
| CATTTATAGTCTCAGATATG+GGG | + | chr8.2:1302148-1302167 | MS.gene95147:intron | 30.0% | |
| GCATTTATAGTCTCAGATAT+GGG | + | chr8.2:1302147-1302166 | MS.gene95147:intron | 30.0% | |
| TATAAGTGAATTCTGATTGC+AGG | + | chr8.2:1302226-1302245 | MS.gene95147:intron | 30.0% | |
| ! | CATATCTGAGACTATAAATG+CGG | - | chr8.2:1302148-1302167 | None:intergenic | 30.0% |
| ! | CTTTCTTAACTGAACTTGTT+TGG | + | chr8.2:1301904-1301923 | MS.gene95147:intron | 30.0% |
| ! | GGTCTAATGATGATAACTTT+TGG | + | chr8.2:1302405-1302424 | MS.gene95147:CDS | 30.0% |
| ! | TAGTCTCTGATCTAATTTTG+GGG | + | chr8.2:1302053-1302072 | MS.gene95147:intron | 30.0% |
| AAAGATCAGCATTGCATTCT+AGG | - | chr8.2:1301843-1301862 | None:intergenic | 35.0% | |
| AATACTCGCTTGGTTATTGT+TGG | - | chr8.2:1301555-1301574 | None:intergenic | 35.0% | |
| AATCAACATAGTAGGAGAGT+AGG | - | chr8.2:1301651-1301670 | None:intergenic | 35.0% | |
| ACCTGATTAGGATTGAATAC+GGG | - | chr8.2:1301270-1301289 | None:intergenic | 35.0% | |
| ATGGAAATTGTAAACCTAGG+AGG | + | chr8.2:1301241-1301260 | MS.gene95147:CDS | 35.0% | |
| CAGTATATCCTAGTTGCAAA+AGG | + | chr8.2:1302585-1302604 | MS.gene95147:intron | 35.0% | |
| CGCATTTATAGTCTCAGATA+TGG | + | chr8.2:1302146-1302165 | MS.gene95147:intron | 35.0% | |
| GACCTGATTAGGATTGAATA+CGG | - | chr8.2:1301271-1301290 | None:intergenic | 35.0% | |
| TTCAAAGAGCCATCAAAATC+AGG | - | chr8.2:1302726-1302745 | None:intergenic | 35.0% | |
| ! | ACTCTTCCGTTGATGAAAAA+TGG | + | chr8.2:1301326-1301345 | MS.gene95147:CDS | 35.0% |
| ! | CATTAGAAGGTGCATTAAGT+GGG | + | chr8.2:1302264-1302283 | MS.gene95147:CDS | 35.0% |
| ! | TCAAATCACCTTTTGCAACT+AGG | - | chr8.2:1302596-1302615 | None:intergenic | 35.0% |
| !! | AAGAGAGCGTTGTAAGAAAA+TGG | + | chr8.2:1302775-1302794 | MS.gene95147:CDS | 35.0% |
| !! | AGAGAGCGTTGTAAGAAAAT+GGG | + | chr8.2:1302776-1302795 | MS.gene95147:CDS | 35.0% |
| !! | ATACAGCAATGGATTGATGA+TGG | - | chr8.2:1302628-1302647 | None:intergenic | 35.0% |
| !! | CAAGCTAGAAAAGCATTAGA+AGG | + | chr8.2:1302251-1302270 | MS.gene95147:CDS | 35.0% |
| !! | TTTTGATGGCTCTTTGAAGA+AGG | + | chr8.2:1302728-1302747 | MS.gene95147:CDS | 35.0% |
| !!! | TTTTGTTGTTGTCTGAGAAG+AGG | - | chr8.2:1301399-1301418 | None:intergenic | 35.0% |
| AATCAAAAGACGAGAAGAGC+TGG | + | chr8.2:1302319-1302338 | MS.gene95147:CDS | 40.0% | |
| AATTTGAGAAGTGAGTTCCG+AGG | + | chr8.2:1302193-1302212 | MS.gene95147:intron | 40.0% | |
| AGGGATAAGGCAAATTATGC+AGG | - | chr8.2:1301530-1301549 | None:intergenic | 40.0% | |
| ATCAAAAGACGAGAAGAGCT+GGG | + | chr8.2:1302320-1302339 | MS.gene95147:CDS | 40.0% | |
| ATCCATTGCTGTATGCACTT+CGG | + | chr8.2:1302634-1302653 | MS.gene95147:CDS | 40.0% | |
| ATTTGAGAAGTGAGTTCCGA+GGG | + | chr8.2:1302194-1302213 | MS.gene95147:intron | 40.0% | |
| CAAATTATGCAGGCAGTGAA+AGG | - | chr8.2:1301520-1301539 | None:intergenic | 40.0% | |
| CAATTTACTGTCACACGAGA+AGG | + | chr8.2:1301813-1301832 | MS.gene95147:intron | 40.0% | |
| CAGATATGGGGGAATTAAGT+GGG | + | chr8.2:1302160-1302179 | MS.gene95147:intron | 40.0% | |
| CTCAGACAACAACAAAAGAG+AGG | + | chr8.2:1301402-1301421 | MS.gene95147:CDS | 40.0% | |
| GACAACAACAAAAGAGAGGT+AGG | + | chr8.2:1301406-1301425 | MS.gene95147:intron | 40.0% | |
| TCAGATATGGGGGAATTAAG+TGG | + | chr8.2:1302159-1302178 | MS.gene95147:intron | 40.0% | |
| TCCCGTATTCAATCCTAATC+AGG | + | chr8.2:1301266-1301285 | MS.gene95147:CDS | 40.0% | |
| ! | GCATTAGAAGGTGCATTAAG+TGG | + | chr8.2:1302263-1302282 | MS.gene95147:CDS | 40.0% |
| ! | GTTATTGTTGGCTAGGGATA+AGG | - | chr8.2:1301543-1301562 | None:intergenic | 40.0% |
| !! | CAAGCTAGTCTTACTGTACT+TGG | + | chr8.2:1302440-1302459 | MS.gene95147:CDS | 40.0% |
| !! | GAGAGCGTTGTAAGAAAATG+GGG | + | chr8.2:1302777-1302796 | MS.gene95147:CDS | 40.0% |
| !! | GCGACTCCATTTTTCATCAA+CGG | - | chr8.2:1301335-1301354 | None:intergenic | 40.0% |
| GAGCTGCTTAGTCGTCAATT+GGG | - | chr8.2:1301305-1301324 | None:intergenic | 45.0% | |
| TAGTCGTCAATTGGGAACGA+TGG | - | chr8.2:1301297-1301316 | None:intergenic | 45.0% | |
| TCCATTGCTGTATGCACTTC+GGG | + | chr8.2:1302635-1302654 | MS.gene95147:CDS | 45.0% | |
| ! | AGAGGCATGTGAATCTGCTT+CGG | - | chr8.2:1301381-1301400 | None:intergenic | 45.0% |
| ! | CGCTTGGTTATTGTTGGCTA+GGG | - | chr8.2:1301549-1301568 | None:intergenic | 45.0% |
| ! | GATGGCTCTTTGAAGAAGGA+AGG | + | chr8.2:1302732-1302751 | MS.gene95147:CDS | 45.0% |
| ! | GGTGATCAGCCTGATTTTGA+TGG | + | chr8.2:1302714-1302733 | MS.gene95147:CDS | 45.0% |
| ! | TCGCTTGGTTATTGTTGGCT+AGG | - | chr8.2:1301550-1301569 | None:intergenic | 45.0% |
| !! | ATGGATTGATGATGGCAACG+AGG | - | chr8.2:1302620-1302639 | None:intergenic | 45.0% |
| AAAAGACGAGAAGAGCTGGG+AGG | + | chr8.2:1302323-1302342 | MS.gene95147:CDS | 50.0% | |
| AACGATGGCGTGACCTGATT+AGG | - | chr8.2:1301282-1301301 | None:intergenic | 50.0% | |
| CCATTGCTGTATGCACTTCG+GGG | + | chr8.2:1302636-1302655 | MS.gene95147:CDS | 50.0% | |
| CGAGCTGCTTAGTCGTCAAT+TGG | - | chr8.2:1301306-1301325 | None:intergenic | 50.0% | |
| GCATGTGAATCTGCTTCGGT+TGG | - | chr8.2:1301377-1301396 | None:intergenic | 50.0% | |
| TTGAATACGGGACTCCTCCT+AGG | - | chr8.2:1301258-1301277 | None:intergenic | 50.0% | |
| TTTGGGTGGGGTAGATGGTT+TGG | + | chr8.2:1302380-1302399 | MS.gene95147:CDS | 50.0% | |
| ! | CGGGGAGTGAGAAATGGATT+TGG | + | chr8.2:1302654-1302673 | MS.gene95147:CDS | 50.0% |
| CCCCGAAGTGCATACAGCAA+TGG | - | chr8.2:1302639-1302658 | None:intergenic | 55.0% | |
| GCACTTCGGGGAGTGAGAAA+TGG | + | chr8.2:1302648-1302667 | MS.gene95147:CDS | 55.0% | |
| !! | GTGGTGGAGGAGGTTGGTTT+GGG | + | chr8.2:1302363-1302382 | MS.gene95147:CDS | 55.0% |
| !! | GTTGGTTTGGGTGGGGTAGA+TGG | + | chr8.2:1302375-1302394 | MS.gene95147:CDS | 55.0% |
| !! | TGGAGGAGGTTGGTTTGGGT+GGG | + | chr8.2:1302367-1302386 | MS.gene95147:CDS | 55.0% |
| AGACGAGAAGAGCTGGGAGG+CGG | + | chr8.2:1302326-1302345 | MS.gene95147:CDS | 60.0% | |
| ! | GGTGGGGTAGATGGTTTGGC+TGG | + | chr8.2:1302384-1302403 | MS.gene95147:CDS | 60.0% |
| !! | GGAGGAGGTTGGTTTGGGTG+GGG | + | chr8.2:1302368-1302387 | MS.gene95147:CDS | 60.0% |
| !! | GGTGGTGGAGGAGGTTGGTT+TGG | + | chr8.2:1302362-1302381 | MS.gene95147:CDS | 60.0% |
| !! | GTGGAGGAGGTTGGTTTGGG+TGG | + | chr8.2:1302366-1302385 | MS.gene95147:CDS | 60.0% |
| CGAGAAGAGCTGGGAGGCGG+AGG | + | chr8.2:1302329-1302348 | MS.gene95147:CDS | 70.0% | |
| CTGGGAGGCGGAGGTGACAG+CGG | + | chr8.2:1302338-1302357 | MS.gene95147:CDS | 70.0% | |
| GGAGGCGGAGGTGACAGCGG+CGG | + | chr8.2:1302341-1302360 | MS.gene95147:CDS | 75.0% | |
| GGAGGTGACAGCGGCGGTGG+TGG | + | chr8.2:1302347-1302366 | MS.gene95147:CDS | 75.0% | |
| ! | GGTGACAGCGGCGGTGGTGG+AGG | + | chr8.2:1302350-1302369 | MS.gene95147:CDS | 75.0% |
| !! | GACAGCGGCGGTGGTGGAGG+AGG | + | chr8.2:1302353-1302372 | MS.gene95147:CDS | 75.0% |
| !! | GCGGCGGTGGTGGAGGAGGT+TGG | + | chr8.2:1302357-1302376 | MS.gene95147:CDS | 75.0% |
| ! | GGCGGAGGTGACAGCGGCGG+TGG | + | chr8.2:1302344-1302363 | MS.gene95147:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 1301241 | 1302809 | 1301241 | ID=MS.gene95147 |
| chr8.2 | mRNA | 1301241 | 1302809 | 1301241 | ID=MS.gene95147.t1;Parent=MS.gene95147 |
| chr8.2 | exon | 1301241 | 1301423 | 1301241 | ID=MS.gene95147.t1.exon1;Parent=MS.gene95147.t1 |
| chr8.2 | CDS | 1301241 | 1301423 | 1301241 | ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1 |
| chr8.2 | exon | 1302248 | 1302475 | 1302248 | ID=MS.gene95147.t1.exon2;Parent=MS.gene95147.t1 |
| chr8.2 | CDS | 1302248 | 1302475 | 1302248 | ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1 |
| chr8.2 | exon | 1302588 | 1302809 | 1302588 | ID=MS.gene95147.t1.exon3;Parent=MS.gene95147.t1 |
| chr8.2 | CDS | 1302588 | 1302809 | 1302588 | ID=cds.MS.gene95147.t1;Parent=MS.gene95147.t1 |
| Gene Sequence |
| Protein sequence |
