Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97025.t1 | XP_013449859.1 | 96.2 | 1012 | 31 | 2 | 1 | 1011 | 1 | 1006 | 0.00E+00 | 1933.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97025.t1 | Q9ZP54 | 68.7 | 1016 | 280 | 10 | 1 | 1011 | 1 | 983 | 0.0e+00 | 1340.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97025.t1 | A0A072U2F3 | 96.2 | 1012 | 31 | 2 | 1 | 1011 | 1 | 1006 | 0.0e+00 | 1933.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054593 | MS.gene97025 | 0.801466 | 8.89E-49 | -1.69E-46 |
MS.gene056041 | MS.gene97025 | 0.816845 | 4.48E-52 | -1.69E-46 |
MS.gene056528 | MS.gene97025 | 0.812794 | 3.54E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene05640 | MS.gene97025 | PPI |
MS.gene047613 | MS.gene97025 | PPI |
MS.gene34372 | MS.gene97025 | PPI |
MS.gene001031 | MS.gene97025 | PPI |
MS.gene071364 | MS.gene97025 | PPI |
MS.gene04079 | MS.gene97025 | PPI |
MS.gene070946 | MS.gene97025 | PPI |
MS.gene043821 | MS.gene97025 | PPI |
MS.gene041066 | MS.gene97025 | PPI |
MS.gene010334 | MS.gene97025 | PPI |
MS.gene043818 | MS.gene97025 | PPI |
MS.gene024860 | MS.gene97025 | PPI |
MS.gene015168 | MS.gene97025 | PPI |
MS.gene08109 | MS.gene97025 | PPI |
MS.gene77163 | MS.gene97025 | PPI |
MS.gene95803 | MS.gene97025 | PPI |
MS.gene067030 | MS.gene97025 | PPI |
MS.gene49473 | MS.gene97025 | PPI |
MS.gene21834 | MS.gene97025 | PPI |
MS.gene97025 | MS.gene75579 | PPI |
MS.gene77160 | MS.gene97025 | PPI |
MS.gene045239 | MS.gene97025 | PPI |
MS.gene04418 | MS.gene97025 | PPI |
MS.gene78972 | MS.gene97025 | PPI |
MS.gene81099 | MS.gene97025 | PPI |
MS.gene071366 | MS.gene97025 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97025.t1 | MTR_7g096520 | 97.628 | 1012 | 17 | 2 | 1 | 1011 | 1 | 1006 | 0.0 | 2049 |
MS.gene97025.t1 | MTR_4g053530 | 30.477 | 817 | 482 | 21 | 242 | 1010 | 28 | 806 | 8.14e-110 | 360 |
MS.gene97025.t1 | MTR_1g088375 | 39.175 | 485 | 264 | 11 | 542 | 1007 | 127 | 599 | 1.01e-109 | 354 |
MS.gene97025.t1 | MTR_1g088400 | 42.188 | 256 | 139 | 4 | 727 | 974 | 22 | 276 | 2.04e-61 | 211 |
MS.gene97025.t1 | MTR_1g088400 | 45.575 | 226 | 120 | 3 | 751 | 974 | 5 | 229 | 3.41e-61 | 209 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97025.t1 | AT2G31320 | 68.012 | 1016 | 287 | 10 | 1 | 1011 | 1 | 983 | 0.0 | 1394 |
MS.gene97025.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 89 | 565 | 3.77e-107 | 345 |
MS.gene97025.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 160 | 636 | 1.20e-106 | 346 |
MS.gene97025.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 158 | 634 | 1.64e-106 | 345 |
MS.gene97025.t1 | AT5G22470 | 30.559 | 769 | 455 | 20 | 290 | 1010 | 68 | 805 | 1.32e-100 | 335 |
MS.gene97025.t1 | AT3G14890 | 28.782 | 271 | 176 | 8 | 9 | 266 | 49 | 315 | 7.03e-12 | 70.1 |
MS.gene97025.t1 | AT3G14890 | 31.658 | 199 | 122 | 5 | 9 | 197 | 49 | 243 | 8.89e-11 | 66.6 |
Find 255 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTCATCCACATATTATT+AGG | 0.105501 | 7.4:-12940242 | MS.gene97025:CDS |
GGGCATGAGGCCATCGAATT+TGG | 0.181131 | 7.4:+12945612 | None:intergenic |
CGACTATTCTTTGAGAAAAC+TGG | 0.242070 | 7.4:-12940938 | MS.gene97025:CDS |
TAGCCAGTTGCTGGGGCTTC+AGG | 0.259348 | 7.4:+12938508 | None:intergenic |
CAGTGGTTCAAATCTCAAAA+AGG | 0.259566 | 7.4:-12942700 | MS.gene97025:CDS |
TGTTCTCTACTTCAGGTTCT+AGG | 0.267279 | 7.4:-12938579 | MS.gene97025:intron |
ATCTTGATCAATTCTATTAA+TGG | 0.278783 | 7.4:+12940674 | None:intergenic |
GGTTGCAATGGGACTCTTGC+AGG | 0.282998 | 7.4:+12945669 | None:intergenic |
GATTTGAGAGTTGCCATCTC+TGG | 0.283526 | 7.4:-12942574 | MS.gene97025:CDS |
CATTCATCCACATATTATTA+GGG | 0.284288 | 7.4:-12940241 | MS.gene97025:CDS |
TACTGATTATCTGTTTCCTT+TGG | 0.287387 | 7.4:+12942800 | None:intergenic |
TATCTTCTTCAATTATTTGC+AGG | 0.292751 | 7.4:+12941071 | None:intergenic |
CAAATAATTGAAGAAGATAA+TGG | 0.297851 | 7.4:-12941067 | MS.gene97025:CDS |
AATAGTCAGAGAGGACTATT+TGG | 0.300812 | 7.4:-12942083 | MS.gene97025:CDS |
ACTGATTATCTGTTTCCTTT+GGG | 0.313751 | 7.4:+12942801 | None:intergenic |
CAGTTTCCCAAGTGGCATTT+CGG | 0.317336 | 7.4:+12940526 | None:intergenic |
GCTTCTGGCCTACAGGATTC+TGG | 0.317832 | 7.4:-12941944 | MS.gene97025:CDS |
CTGGAAACCCTTGGGAGGCC+TGG | 0.325393 | 7.4:-12940919 | MS.gene97025:CDS |
ATTTGTCTACTGGTATTAAC+AGG | 0.328166 | 7.4:-12941868 | MS.gene97025:intron |
ACTTTGCATATTCAGATTCC+AGG | 0.332395 | 7.4:+12937936 | None:intergenic |
AGTGCTGTTCATGATGCTTC+TGG | 0.337109 | 7.4:-12941959 | MS.gene97025:CDS |
TTGCCAACTTTGTCTCTGTA+AGG | 0.340991 | 7.4:+12939610 | None:intergenic |
AGCCCCAGCAACTGGCTATA+TGG | 0.348497 | 7.4:-12938503 | MS.gene97025:intron |
GAGCCCAGAGATCTTTGCTC+TGG | 0.349228 | 7.4:+12943507 | None:intergenic |
CACATCTCCCTTGACTTTAG+TGG | 0.350644 | 7.4:+12943607 | None:intergenic |
ACTTTGCCCCTTGACTTTGA+TGG | 0.354008 | 7.4:+12941979 | None:intergenic |
CACTTCCCTTCAGCACGCTT+CGG | 0.357140 | 7.4:+12942830 | None:intergenic |
CCTCCTGAAGCCCCAGCAAC+TGG | 0.366832 | 7.4:-12938511 | MS.gene97025:CDS |
AGCCTGATGGTCAAGGTGCC+AGG | 0.368170 | 7.4:-12943965 | MS.gene97025:CDS |
GGACTATTTGGTTGACTGTA+TGG | 0.370013 | 7.4:-12942071 | MS.gene97025:CDS |
TGGTCAAGGTGCCAGGGGTT+TGG | 0.371181 | 7.4:-12943958 | MS.gene97025:CDS |
CTTCCAAAGGTGGCACTAAA+CGG | 0.382184 | 7.4:-12943664 | MS.gene97025:CDS |
TTCCAAAGGTGGCACTAAAC+GGG | 0.385197 | 7.4:-12943663 | MS.gene97025:CDS |
TGTCGAAATCTGATGCAATC+AGG | 0.391979 | 7.4:-12940970 | MS.gene97025:CDS |
AAGGTGCCAGGGGTTTGGCT+TGG | 0.393692 | 7.4:-12943953 | MS.gene97025:CDS |
GGTGGTCAGTGGAGCGCTTA+AGG | 0.394139 | 7.4:-12942235 | MS.gene97025:CDS |
GCCAAAGTTTCACTGTTTGA+TGG | 0.394353 | 7.4:+12942598 | None:intergenic |
ATCAATGGAGTCGTCGTTGT+TGG | 0.395881 | 7.4:+12939919 | None:intergenic |
ATTTATACAACGGAATCTTC+AGG | 0.397858 | 7.4:+12942547 | None:intergenic |
AATATGTCTGATTTGTCTAC+TGG | 0.398742 | 7.4:-12941878 | MS.gene97025:CDS |
ATTGCTACGTGTTTCGCAAA+TGG | 0.400336 | 7.4:-12941039 | MS.gene97025:CDS |
ATTGTGTTAACATACCCTTT+TGG | 0.408371 | 7.4:+12940489 | None:intergenic |
AGGCCCAGAGCAAAGATCTC+TGG | 0.408797 | 7.4:-12943511 | MS.gene97025:CDS |
AGTGCTGATGGAATGATGTT+TGG | 0.410252 | 7.4:-12942965 | MS.gene97025:CDS |
TTGCTACGTGTTTCGCAAAT+GGG | 0.412307 | 7.4:-12941038 | MS.gene97025:CDS |
AGATAATCAGTACCTTAAAA+AGG | 0.412335 | 7.4:-12942789 | MS.gene97025:intron |
CCTAATAATATGTGGATGAA+TGG | 0.413880 | 7.4:+12940242 | None:intergenic |
TCATGATGCTTCTGGCCTAC+AGG | 0.417766 | 7.4:-12941951 | MS.gene97025:CDS |
CTTAAAAGCATTAGACCAAC+AGG | 0.419926 | 7.4:+12938243 | None:intergenic |
TAAACTGCAATTCTTGTTGA+AGG | 0.420099 | 7.4:-12937229 | MS.gene97025:CDS |
TGAAATAGCCTCAAGATTAG+TGG | 0.423165 | 7.4:-12939951 | MS.gene97025:CDS |
CTTCTTATAATTATCATCAA+TGG | 0.427067 | 7.4:+12939904 | None:intergenic |
TCCATCCTCATTTCTTGTGA+TGG | 0.429629 | 7.4:+12937199 | None:intergenic |
AAATAGTCCTCTCTGACTAT+TGG | 0.430169 | 7.4:+12942085 | None:intergenic |
AAATTATCCACTTCAATTGA+TGG | 0.434056 | 7.4:+12943900 | None:intergenic |
ATTTGAGAGTTGCCATCTCT+GGG | 0.434588 | 7.4:-12942573 | MS.gene97025:CDS |
CCCCTGGCACCTTGACCATC+AGG | 0.441143 | 7.4:+12943963 | None:intergenic |
CGTTGTTCCCTGTGGGAAAC+CGG | 0.449287 | 7.4:-12937900 | MS.gene97025:CDS |
GAGCAAAAGTAATATCCAAA+AGG | 0.451321 | 7.4:-12940504 | MS.gene97025:CDS |
ACCTGGGAGATTCTTCCCCT+TGG | 0.453013 | 7.4:-12940873 | MS.gene97025:CDS |
TCAACTTTGTACATATCAAA+TGG | 0.457516 | 7.4:+12942031 | None:intergenic |
AGCAGAGATGCGTGAAATGC+TGG | 0.457723 | 7.4:-12943453 | MS.gene97025:CDS |
TGCTCATTGATGCTAGCAAT+AGG | 0.458324 | 7.4:-12940284 | MS.gene97025:CDS |
TATTGTCATTTCAGTGCTGA+TGG | 0.458515 | 7.4:-12942977 | MS.gene97025:intron |
CAAGATTGGAGGGAACAAAC+TGG | 0.458917 | 7.4:-12940999 | MS.gene97025:CDS |
TTGAGAAAACTGGAAACCCT+TGG | 0.466084 | 7.4:-12940928 | MS.gene97025:CDS |
TTCTAGGTTGACGAACTTTG+TGG | 0.466090 | 7.4:-12938563 | MS.gene97025:CDS |
TGGAAACCCTTGGGAGGCCT+GGG | 0.466277 | 7.4:-12940918 | MS.gene97025:CDS |
TCTCTCATCTTCTGATCAAT+CGG | 0.467085 | 7.4:-12943862 | MS.gene97025:CDS |
AAATAATTGAAGAAGATAAT+GGG | 0.467660 | 7.4:-12941066 | MS.gene97025:CDS |
TTCAGCACGCTTCGGTTCGC+AGG | 0.467797 | 7.4:+12942838 | None:intergenic |
TTTGCGTACTCTGCTTTCCA+TGG | 0.468447 | 7.4:+12945715 | None:intergenic |
ACCATCAAACAGTGAAACTT+TGG | 0.468714 | 7.4:-12942599 | MS.gene97025:CDS |
ATTGAAGTGGATAATTTGCC+TGG | 0.469195 | 7.4:-12943894 | MS.gene97025:CDS |
AGTCCTTGCTCTCTATGTGA+TGG | 0.470443 | 7.4:-12942935 | MS.gene97025:CDS |
AAAGCAGAGTACGCAAAATC+AGG | 0.472100 | 7.4:-12945709 | MS.gene97025:CDS |
CGGAGCTTCTCGGTTGCAAT+GGG | 0.474695 | 7.4:+12945658 | None:intergenic |
AGGCTATTTCAATATCTTGA+AGG | 0.475473 | 7.4:+12939963 | None:intergenic |
GCACCATGCTAAGTGTCTCT+TGG | 0.477110 | 7.4:-12943931 | MS.gene97025:CDS |
GAACTTAGAGTCGCTTCGTT+GGG | 0.480032 | 7.4:-12945203 | MS.gene97025:CDS |
AGGGAGATGTGTCTGCGAGC+AGG | 0.481221 | 7.4:-12943595 | MS.gene97025:CDS |
CTCAAGATCACGTGCCGCCC+CGG | 0.481538 | 7.4:+12943544 | None:intergenic |
GGAGGAATGTACCGGTGCAC+TGG | 0.484725 | 7.4:-12942896 | MS.gene97025:CDS |
TTTGCCTGCAGTTTGGCAAA+GGG | 0.487008 | 7.4:-12938326 | MS.gene97025:intron |
GCCGCCTCTAAGTCGAGTGC+TGG | 0.487078 | 7.4:-12945094 | MS.gene97025:CDS |
TGCCAACTTTGTCTCTGTAA+GGG | 0.487650 | 7.4:+12939611 | None:intergenic |
GCCAATGGTCAAGATTCAAC+AGG | 0.488288 | 7.4:-12943428 | MS.gene97025:CDS |
AGAACCATATAGCCAGTTGC+TGG | 0.488876 | 7.4:+12938499 | None:intergenic |
TCTTTAATGTGGAAACATAC+AGG | 0.491969 | 7.4:-12940649 | MS.gene97025:intron |
TGAGAAAACTGGAAACCCTT+GGG | 0.492370 | 7.4:-12940927 | MS.gene97025:CDS |
AGCCCAGAGATCTTTGCTCT+GGG | 0.492857 | 7.4:+12943508 | None:intergenic |
GCAATGCTGATCCATCAGTC+AGG | 0.495787 | 7.4:-12940314 | MS.gene97025:CDS |
GGCGGAGGCAATATCCTAGT+TGG | 0.497852 | 7.4:+12942670 | None:intergenic |
TTTAGTGCCACCTTTGGAAG+AGG | 0.498151 | 7.4:+12943667 | None:intergenic |
TCCTGTTGAATCTTGACCAT+TGG | 0.499269 | 7.4:+12943427 | None:intergenic |
AAAGCATTCTACTAAAGGAC+TGG | 0.500575 | 7.4:-12937972 | MS.gene97025:CDS |
GGCCCAGAGCAAAGATCTCT+GGG | 0.501573 | 7.4:-12943510 | MS.gene97025:CDS |
ACGGAGCTTCTCGGTTGCAA+TGG | 0.502052 | 7.4:+12945657 | None:intergenic |
TCCACATATTATTAGGGATG+AGG | 0.505116 | 7.4:-12940235 | MS.gene97025:CDS |
AGCAAAAGTAATATCCAAAA+GGG | 0.506378 | 7.4:-12940503 | MS.gene97025:intron |
CAAGGAAAGCATTCTACTAA+AGG | 0.506710 | 7.4:-12937977 | MS.gene97025:CDS |
TGTGTCTGCGAGCAGGGTAG+CGG | 0.507169 | 7.4:-12943588 | MS.gene97025:CDS |
GTTTCGCAAACTTCACGTGC+TGG | 0.507650 | 7.4:-12945046 | MS.gene97025:CDS |
TCTTCACTGTCATGAGGAAG+TGG | 0.510609 | 7.4:+12939863 | None:intergenic |
ACCCTCAAAACGCGAAGCCA+TGG | 0.510955 | 7.4:-12945732 | MS.gene97025:CDS |
AAGAAATAGTACAATTTCCA+AGG | 0.514163 | 7.4:+12940856 | None:intergenic |
TCAGCAGAAGTCCTTGATGA+TGG | 0.516997 | 7.4:+12942649 | None:intergenic |
CGAAGCGTGCTGAAGGGAAG+TGG | 0.517630 | 7.4:-12942829 | MS.gene97025:CDS |
AAGACTATTCAGAAGCAACC+TGG | 0.518065 | 7.4:-12940890 | MS.gene97025:CDS |
ATCAATTCTATTAATGGAGG+GGG | 0.518129 | 7.4:+12940680 | None:intergenic |
GCCTGATGGTCAAGGTGCCA+GGG | 0.518214 | 7.4:-12943964 | MS.gene97025:CDS |
GAAATAGCCTCAAGATTAGT+GGG | 0.518552 | 7.4:-12939950 | MS.gene97025:CDS |
CGCAAAATTGATGCAGTAGG+TGG | 0.519400 | 7.4:-12942392 | MS.gene97025:CDS |
GCCAACTTTGTCTCTGTAAG+GGG | 0.519558 | 7.4:+12939612 | None:intergenic |
TCTAGGTTGACGAACTTTGT+GGG | 0.519658 | 7.4:-12938562 | MS.gene97025:CDS |
GAGGTGCAATTCTCAGTCCT+TGG | 0.520896 | 7.4:+12938530 | None:intergenic |
CATGAGGCCATCGAATTTGG+AGG | 0.521208 | 7.4:+12945615 | None:intergenic |
GGGAGATGTGTCTGCGAGCA+GGG | 0.522810 | 7.4:-12943594 | MS.gene97025:CDS |
TTGGCAACAGAATGCTCCTA+TGG | 0.523040 | 7.4:-12939594 | MS.gene97025:CDS |
TGCAATTCTTGTTGAAGGTG+AGG | 0.523731 | 7.4:-12937224 | MS.gene97025:CDS |
GCTGAAAGTCAAACTTCTGT+AGG | 0.524644 | 7.4:-12942631 | MS.gene97025:CDS |
GTCGAAATCTGATGCAATCA+GGG | 0.527691 | 7.4:-12940969 | MS.gene97025:CDS |
GGCTATTTCAATATCTTGAA+GGG | 0.528095 | 7.4:+12939964 | None:intergenic |
AAGTACATTGAGAGCGGTGG+TGG | 0.529024 | 7.4:-12945160 | MS.gene97025:CDS |
CGCATATCTACTAAGCCTGA+TGG | 0.530256 | 7.4:-12943978 | MS.gene97025:CDS |
TGATGACACCGGTTTCCCAC+AGG | 0.530388 | 7.4:+12937892 | None:intergenic |
ACTGGGCAAGAAAATGCCCC+TGG | 0.531158 | 7.4:-12937954 | MS.gene97025:CDS |
ATAATATGTGGATGAATGGA+AGG | 0.532035 | 7.4:+12940246 | None:intergenic |
AAGTGGATAATTTGCCTGGA+TGG | 0.532909 | 7.4:-12943890 | MS.gene97025:CDS |
TCCTCATCCCTAATAATATG+TGG | 0.533242 | 7.4:+12940234 | None:intergenic |
TTTGAACCAGCATTCGACTT+CGG | 0.536967 | 7.4:+12945124 | None:intergenic |
AGCTTGATTTGCGTGACCGT+TGG | 0.538235 | 7.4:-12943400 | MS.gene97025:intron |
TGCGAACCGAAGCGTGCTGA+AGG | 0.538550 | 7.4:-12942836 | MS.gene97025:CDS |
GAACCATATAGCCAGTTGCT+GGG | 0.542371 | 7.4:+12938500 | None:intergenic |
CTTCGGTTCGCAGGTAGAGT+AGG | 0.542539 | 7.4:+12942847 | None:intergenic |
GATCAAGATGCTCTTTAATG+TGG | 0.543678 | 7.4:-12940660 | MS.gene97025:CDS |
ATGTACAAAGTTGAAATGAT+TGG | 0.544000 | 7.4:-12942022 | MS.gene97025:CDS |
AGAACTTAGAGTCGCTTCGT+TGG | 0.544067 | 7.4:-12945204 | MS.gene97025:CDS |
CTTCATGCAAAAGTGAAGAA+AGG | 0.545004 | 7.4:-12942365 | MS.gene97025:intron |
GCAACCGAGAAGCTCCGTCT+TGG | 0.548248 | 7.4:-12945652 | MS.gene97025:CDS |
GTCAAAGGCCACTAAAGTCA+AGG | 0.548589 | 7.4:-12943615 | MS.gene97025:CDS |
CGAGTGGGAAATGACAAGAT+TGG | 0.548954 | 7.4:-12941013 | MS.gene97025:CDS |
AAGTTTCACTGTTTGATGGT+TGG | 0.549237 | 7.4:+12942602 | None:intergenic |
TCCAAAGGTGGCACTAAACG+GGG | 0.550317 | 7.4:-12943662 | MS.gene97025:CDS |
GGCACACCGAAGTCGAATGC+TGG | 0.551393 | 7.4:-12945130 | MS.gene97025:CDS |
TGATCAATTCTATTAATGGA+GGG | 0.554166 | 7.4:+12940678 | None:intergenic |
TTGATCAATTCTATTAATGG+AGG | 0.555295 | 7.4:+12940677 | None:intergenic |
TGAGCTCATACACATTTCCA+AGG | 0.555953 | 7.4:+12938211 | None:intergenic |
CCAGTTGCTGGGGCTTCAGG+AGG | 0.557381 | 7.4:+12938511 | None:intergenic |
ACTGAGCACTCTTGCTGACA+AGG | 0.558738 | 7.4:+12938289 | None:intergenic |
GATCAATTCTATTAATGGAG+GGG | 0.558979 | 7.4:+12940679 | None:intergenic |
ATCTTCAGGCAACCCAGAGA+TGG | 0.559690 | 7.4:+12942561 | None:intergenic |
ATTGATCTCAAATTCCATCA+TGG | 0.560644 | 7.4:+12940553 | None:intergenic |
AGCAAGCTATCCCTGACTGA+TGG | 0.560975 | 7.4:+12940303 | None:intergenic |
TACAGATACTAACTGCTTGG+TGG | 0.561481 | 7.4:-12942253 | MS.gene97025:intron |
AATATGTCCGAAATGCCACT+TGG | 0.562170 | 7.4:-12940533 | MS.gene97025:CDS |
CAAAGATCTCTGGGCTCTGA+AGG | 0.563703 | 7.4:-12943501 | MS.gene97025:CDS |
TGCTACGTGTTTCGCAAATG+GGG | 0.565409 | 7.4:-12941037 | MS.gene97025:CDS |
TTTGTTCCCAGGCCTCCCAA+GGG | 0.569125 | 7.4:+12940912 | None:intergenic |
CTTTGCATATTCAGATTCCA+GGG | 0.571220 | 7.4:+12937937 | None:intergenic |
GTTTCGCAAATGGGGTCGAG+TGG | 0.571251 | 7.4:-12941029 | MS.gene97025:CDS |
GTGGGAAATGACAAGATTGG+AGG | 0.572154 | 7.4:-12941010 | MS.gene97025:CDS |
ACTTACAGATACTAACTGCT+TGG | 0.575225 | 7.4:-12942256 | MS.gene97025:intron |
ACTATCTCCATCAATTGAAG+TGG | 0.576095 | 7.4:-12943907 | MS.gene97025:CDS |
GAGAGCGGTGGTGGTAGTAG+TGG | 0.577586 | 7.4:-12945151 | MS.gene97025:CDS |
ATGGTCACCATCAAAGTCAA+GGG | 0.578992 | 7.4:-12941986 | MS.gene97025:CDS |
TATTGCCTCCGCCATCATCA+AGG | 0.581370 | 7.4:-12942660 | MS.gene97025:CDS |
ACTAACTGCTTGGTGGTCAG+TGG | 0.581725 | 7.4:-12942246 | MS.gene97025:CDS |
CATGGTCACCATCAAAGTCA+AGG | 0.582667 | 7.4:-12941987 | MS.gene97025:CDS |
ACCGGTGTCATCAAATGTCA+AGG | 0.583088 | 7.4:-12937882 | MS.gene97025:CDS |
TATAGACATACCGTATGTGT+GGG | 0.584053 | 7.4:+12939800 | None:intergenic |
TCCAAGGGGAAGAATCTCCC+AGG | 0.585297 | 7.4:+12940872 | None:intergenic |
GATGAGAGACTACTCCATCC+AGG | 0.585331 | 7.4:+12943876 | None:intergenic |
AGAAATAGTACAATTTCCAA+GGG | 0.587610 | 7.4:+12940857 | None:intergenic |
GTCTGCGAGCAGGGTAGCGG+CGG | 0.587855 | 7.4:-12943585 | MS.gene97025:CDS |
ATGGTGCCAAGCCAAACCCC+TGG | 0.590698 | 7.4:+12943947 | None:intergenic |
AGACTATTCAGAAGCAACCT+GGG | 0.591957 | 7.4:-12940889 | MS.gene97025:CDS |
TCTGGCCACATACTAGAGGA+AGG | 0.592429 | 7.4:-12941926 | MS.gene97025:CDS |
GCTGATGGAATGATGTTTGG+AGG | 0.592452 | 7.4:-12942962 | MS.gene97025:CDS |
GTTATTCTGGAGGAATGTAC+CGG | 0.592767 | 7.4:-12942904 | MS.gene97025:CDS |
TCTACTAAGCCTGATGGTCA+AGG | 0.596570 | 7.4:-12943972 | MS.gene97025:CDS |
GTAGAATGCTTTCCTTGCGG+AGG | 0.597209 | 7.4:+12937983 | None:intergenic |
GAAGTCCTTGATGATGGCGG+AGG | 0.598242 | 7.4:+12942655 | None:intergenic |
GCCCCTTACAGAGACAAAGT+TGG | 0.599749 | 7.4:-12939613 | MS.gene97025:CDS |
AAACCATCACATAGAGAGCA+AGG | 0.601001 | 7.4:+12942932 | None:intergenic |
AAGTTGAGATGCGGAAGGCA+AGG | 0.601482 | 7.4:-12942209 | MS.gene97025:intron |
TGGGAAATGACAAGATTGGA+GGG | 0.601675 | 7.4:-12941009 | MS.gene97025:CDS |
AACAGAATGCTCCTATGGCA+TGG | 0.602372 | 7.4:-12939589 | MS.gene97025:intron |
AGGTTCCATCACAAGAAATG+AGG | 0.602431 | 7.4:-12937204 | None:intergenic |
AAGCATTCTACTAAAGGACT+GGG | 0.602949 | 7.4:-12937971 | MS.gene97025:CDS |
GATTGGTGAGGCTTCTAGCA+TGG | 0.603400 | 7.4:-12942005 | MS.gene97025:CDS |
TCTTCAATATGCACTCAGCA+TGG | 0.604013 | 7.4:+12945352 | None:intergenic |
TTTCGCAAATGGGGTCGAGT+GGG | 0.606651 | 7.4:-12941028 | MS.gene97025:CDS |
ATATAGACATACCGTATGTG+TGG | 0.608110 | 7.4:+12939799 | None:intergenic |
ACGTGATCTTGAGAATAGAC+TGG | 0.608484 | 7.4:-12943534 | MS.gene97025:CDS |
TCAATCGGCGGTCAGTGAGT+TGG | 0.609881 | 7.4:-12943847 | MS.gene97025:CDS |
CGGAAATGTATCCAGTGCAC+CGG | 0.610371 | 7.4:+12942885 | None:intergenic |
GCCTTGACATTTGATGACAC+CGG | 0.612387 | 7.4:+12937881 | None:intergenic |
CTCATCTTCTGATCAATCGG+CGG | 0.612790 | 7.4:-12943859 | MS.gene97025:CDS |
GTCAAATCCCACTAATCTTG+AGG | 0.614798 | 7.4:+12939943 | None:intergenic |
AAGCTTAAAACTTACTTGAG+CGG | 0.615129 | 7.4:+12937820 | None:intergenic |
AAACGCAAAATTGATGCAGT+AGG | 0.615874 | 7.4:-12942395 | MS.gene97025:CDS |
CTAAAATCTTCACTGTCATG+AGG | 0.616080 | 7.4:+12939857 | None:intergenic |
TCAAAGGCCACTAAAGTCAA+GGG | 0.616641 | 7.4:-12943614 | MS.gene97025:CDS |
GTTCAATCCTCCAAATTCGA+TGG | 0.617034 | 7.4:-12945622 | MS.gene97025:CDS |
TAATATGTGGATGAATGGAA+GGG | 0.619233 | 7.4:+12940247 | None:intergenic |
CCTGATGGTCAAGGTGCCAG+GGG | 0.620093 | 7.4:-12943963 | MS.gene97025:CDS |
AAGTTATGATTACGGGCATG+AGG | 0.620971 | 7.4:+12945599 | None:intergenic |
GTAGGAACATTTACTCCACT+CGG | 0.621416 | 7.4:+12942865 | None:intergenic |
AGAGGGTGAGCAAAAGTCAA+AGG | 0.621871 | 7.4:-12943630 | MS.gene97025:CDS |
GAGCTCATACACATTTCCAA+GGG | 0.623853 | 7.4:+12938212 | None:intergenic |
CGTGCTGGTTGCAAGCATTG+CGG | 0.624498 | 7.4:-12945031 | MS.gene97025:CDS |
GATGACACCGGTTTCCCACA+GGG | 0.624877 | 7.4:+12937893 | None:intergenic |
AACCATATAGCCAGTTGCTG+GGG | 0.625838 | 7.4:+12938501 | None:intergenic |
CAACAATCCTCTTCCAAAGG+TGG | 0.628043 | 7.4:-12943674 | MS.gene97025:CDS |
ATATGTCCGAAATGCCACTT+GGG | 0.628831 | 7.4:-12940532 | MS.gene97025:CDS |
CGTGAAATGCTGGATGCCAA+TGG | 0.629579 | 7.4:-12943443 | MS.gene97025:CDS |
GCGAACCGAAGCGTGCTGAA+GGG | 0.632007 | 7.4:-12942835 | MS.gene97025:CDS |
GTATGTGGCCAGAATCCTGT+AGG | 0.633585 | 7.4:+12941936 | None:intergenic |
GATGATGTCGTTGTTCCCTG+TGG | 0.635856 | 7.4:-12937908 | MS.gene97025:CDS |
TCCAGCACTCGACTTAGAGG+CGG | 0.639433 | 7.4:+12945093 | None:intergenic |
ACACAACAATCCTCTTCCAA+AGG | 0.641848 | 7.4:-12943677 | MS.gene97025:CDS |
TATATAGATAAACCTCCGCA+AGG | 0.642147 | 7.4:-12937995 | MS.gene97025:CDS |
CAATGCTGATCCATCAGTCA+GGG | 0.642435 | 7.4:-12940313 | MS.gene97025:CDS |
ACCAAAACTTACCATGCCAT+AGG | 0.643460 | 7.4:+12939578 | None:intergenic |
TTTGGAAGAGGATTGTTGTG+TGG | 0.645988 | 7.4:+12943679 | None:intergenic |
CTGGCCACATACTAGAGGAA+GGG | 0.647983 | 7.4:-12941925 | MS.gene97025:CDS |
AGAAAGTACATTGAGAGCGG+TGG | 0.649025 | 7.4:-12945163 | MS.gene97025:CDS |
GGATTCTGGCCACATACTAG+AGG | 0.653815 | 7.4:-12941930 | MS.gene97025:CDS |
TTTGTGGGCATTCTTAACCA+AGG | 0.654222 | 7.4:-12938547 | MS.gene97025:CDS |
TGGTAGTGGTACAAATGTCG+AGG | 0.657202 | 7.4:-12943720 | MS.gene97025:CDS |
GAAAATACCAATAGTCAGAG+AGG | 0.660210 | 7.4:-12942092 | MS.gene97025:CDS |
CAAAGTTGAAATGATTGGTG+AGG | 0.661472 | 7.4:-12942017 | MS.gene97025:CDS |
TTAGTAGAATGCTTTCCTTG+CGG | 0.662055 | 7.4:+12937980 | None:intergenic |
TTTGCATATTCAGATTCCAG+GGG | 0.662095 | 7.4:+12937938 | None:intergenic |
TGGAATCTGAATATGCAAAG+TGG | 0.664227 | 7.4:-12937934 | MS.gene97025:CDS |
TGGTCACCATCAAAGTCAAG+GGG | 0.670459 | 7.4:-12941985 | MS.gene97025:CDS |
GAAAACTGGAAACCCTTGGG+AGG | 0.670628 | 7.4:-12940924 | MS.gene97025:CDS |
TAGACATACCGTATGTGTGG+GGG | 0.672350 | 7.4:+12939802 | None:intergenic |
ATGATGTCGTTGTTCCCTGT+GGG | 0.672597 | 7.4:-12937907 | MS.gene97025:CDS |
GCAGAAGTCCTTGATGATGG+CGG | 0.672844 | 7.4:+12942652 | None:intergenic |
GGATGAAGTTGAGATGCGGA+AGG | 0.673329 | 7.4:-12942214 | MS.gene97025:CDS |
ATAGACATACCGTATGTGTG+GGG | 0.680316 | 7.4:+12939801 | None:intergenic |
GTTCCAAGAGACACTTAGCA+TGG | 0.680316 | 7.4:+12943928 | None:intergenic |
CCAAAGGTGGCACTAAACGG+GGG | 0.682751 | 7.4:-12943661 | MS.gene97025:CDS |
ATTAGAAAGTACATTGAGAG+CGG | 0.683297 | 7.4:-12945166 | MS.gene97025:CDS |
TTAAGGATGAAGTTGAGATG+CGG | 0.698261 | 7.4:-12942218 | MS.gene97025:CDS |
TGATCTTGAGAATAGACTGG+AGG | 0.707817 | 7.4:-12943531 | MS.gene97025:CDS |
AGGGAAGTGGAAAATCCCAA+AGG | 0.709398 | 7.4:-12942816 | MS.gene97025:CDS |
GAAATAGTACAATTTCCAAG+GGG | 0.718834 | 7.4:+12940858 | None:intergenic |
GATCTCAAATTCCATCATGG+CGG | 0.725809 | 7.4:+12940556 | None:intergenic |
GATTGGAGGGAACAAACTGG+AGG | 0.726096 | 7.4:-12940996 | MS.gene97025:CDS |
AAATGCTGATGACTCCGGGG+CGG | 0.729846 | 7.4:-12943558 | MS.gene97025:CDS |
GCACTGGATACATTTCCGAG+TGG | 0.746551 | 7.4:-12942880 | MS.gene97025:CDS |
GAAGTGGAGATATATCACAG+TGG | 0.820451 | 7.4:+12939879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 12937206 | 12945761 | 12937206 | ID=MS.gene97025 |
chr7.4 | mRNA | 12937206 | 12945761 | 12937206 | ID=MS.gene97025.t1;Parent=MS.gene97025 |
chr7.4 | exon | 12945612 | 12945761 | 12945612 | ID=MS.gene97025.t1.exon1;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12945612 | 12945761 | 12945612 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12945333 | 12945382 | 12945333 | ID=MS.gene97025.t1.exon2;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12945333 | 12945382 | 12945333 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12945009 | 12945240 | 12945009 | ID=MS.gene97025.t1.exon3;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12945009 | 12945240 | 12945009 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12943817 | 12944003 | 12943817 | ID=MS.gene97025.t1.exon4;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12943817 | 12944003 | 12943817 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12943401 | 12943743 | 12943401 | ID=MS.gene97025.t1.exon5;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12943401 | 12943743 | 12943401 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12942790 | 12942985 | 12942790 | ID=MS.gene97025.t1.exon6;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12942790 | 12942985 | 12942790 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12942555 | 12942719 | 12942555 | ID=MS.gene97025.t1.exon7;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12942555 | 12942719 | 12942555 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12942366 | 12942426 | 12942366 | ID=MS.gene97025.t1.exon8;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12942366 | 12942426 | 12942366 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12942210 | 12942270 | 12942210 | ID=MS.gene97025.t1.exon9;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12942210 | 12942270 | 12942210 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12941869 | 12942120 | 12941869 | ID=MS.gene97025.t1.exon10;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12941869 | 12942120 | 12941869 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12940868 | 12941102 | 12940868 | ID=MS.gene97025.t1.exon11;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12940868 | 12941102 | 12940868 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12940650 | 12940762 | 12940650 | ID=MS.gene97025.t1.exon12;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12940650 | 12940762 | 12940650 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12940504 | 12940580 | 12940504 | ID=MS.gene97025.t1.exon13;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12940504 | 12940580 | 12940504 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12940218 | 12940378 | 12940218 | ID=MS.gene97025.t1.exon14;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12940218 | 12940378 | 12940218 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12939811 | 12940002 | 12939811 | ID=MS.gene97025.t1.exon15;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12939811 | 12940002 | 12939811 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12939590 | 12939698 | 12939590 | ID=MS.gene97025.t1.exon16;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12939590 | 12939698 | 12939590 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12938504 | 12938586 | 12938504 | ID=MS.gene97025.t1.exon17;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12938504 | 12938586 | 12938504 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12938200 | 12938337 | 12938200 | ID=MS.gene97025.t1.exon18;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12938200 | 12938337 | 12938200 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12937835 | 12938017 | 12937835 | ID=MS.gene97025.t1.exon19;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12937835 | 12938017 | 12937835 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
chr7.4 | exon | 12937206 | 12937253 | 12937206 | ID=MS.gene97025.t1.exon20;Parent=MS.gene97025.t1 |
chr7.4 | CDS | 12937206 | 12937253 | 12937206 | ID=cds.MS.gene97025.t1;Parent=MS.gene97025.t1 |
Gene Sequence |
Protein sequence |