Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99937.t1 | XP_013465643.1 | 94.9 | 391 | 13 | 1 | 44 | 434 | 56 | 439 | 7.00E-196 | 693.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99937.t1 | Q5KQN0 | 75.0 | 384 | 88 | 2 | 51 | 434 | 58 | 433 | 3.9e-155 | 549.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99937.t1 | A0A072VCB3 | 94.9 | 391 | 13 | 1 | 44 | 434 | 56 | 439 | 5.0e-196 | 693.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049283 | MS.gene99937 | 0.814332 | 1.63E-51 | -1.69E-46 |
MS.gene049807 | MS.gene99937 | 0.806466 | 8.12E-50 | -1.69E-46 |
MS.gene050414 | MS.gene99937 | 0.800979 | 1.12E-48 | -1.69E-46 |
MS.gene050945 | MS.gene99937 | 0.842986 | 1.85E-58 | -1.69E-46 |
MS.gene051234 | MS.gene99937 | 0.801274 | 9.73E-49 | -1.69E-46 |
MS.gene051699 | MS.gene99937 | 0.82001 | 8.60E-53 | -1.69E-46 |
MS.gene051959 | MS.gene99937 | 0.812715 | 3.69E-51 | -1.69E-46 |
MS.gene051960 | MS.gene99937 | 0.813908 | 2.02E-51 | -1.69E-46 |
MS.gene052016 | MS.gene99937 | 0.801027 | 1.09E-48 | -1.69E-46 |
MS.gene052307 | MS.gene99937 | 0.832361 | 9.88E-56 | -1.69E-46 |
MS.gene052533 | MS.gene99937 | 0.857207 | 1.91E-62 | -1.69E-46 |
MS.gene052609 | MS.gene99937 | 0.817658 | 2.94E-52 | -1.69E-46 |
MS.gene053143 | MS.gene99937 | 0.809128 | 2.21E-50 | -1.69E-46 |
MS.gene054178 | MS.gene99937 | 0.812728 | 3.66E-51 | -1.69E-46 |
MS.gene054413 | MS.gene99937 | 0.81059 | 1.07E-50 | -1.69E-46 |
MS.gene05454 | MS.gene99937 | 0.807364 | 5.24E-50 | -1.69E-46 |
MS.gene054892 | MS.gene99937 | 0.832701 | 8.13E-56 | -1.69E-46 |
MS.gene054893 | MS.gene99937 | 0.831175 | 1.94E-55 | -1.69E-46 |
MS.gene054957 | MS.gene99937 | 0.800096 | 1.69E-48 | -1.69E-46 |
MS.gene055229 | MS.gene99937 | 0.800748 | 1.25E-48 | -1.69E-46 |
MS.gene055386 | MS.gene99937 | 0.824277 | 8.81E-54 | -1.69E-46 |
MS.gene056677 | MS.gene99937 | 0.830479 | 2.87E-55 | -1.69E-46 |
MS.gene056699 | MS.gene99937 | 0.805908 | 1.06E-49 | -1.69E-46 |
MS.gene05686 | MS.gene99937 | 0.806879 | 6.64E-50 | -1.69E-46 |
MS.gene057102 | MS.gene99937 | 0.828471 | 8.83E-55 | -1.69E-46 |
MS.gene058095 | MS.gene99937 | 0.801209 | 1.00E-48 | -1.69E-46 |
MS.gene058159 | MS.gene99937 | 0.802231 | 6.19E-49 | -1.69E-46 |
MS.gene05952 | MS.gene99937 | 0.812957 | 3.26E-51 | -1.69E-46 |
MS.gene059634 | MS.gene99937 | 0.800982 | 1.12E-48 | -1.69E-46 |
MS.gene05985 | MS.gene99937 | -0.841706 | 4.04E-58 | -1.69E-46 |
MS.gene059965 | MS.gene99937 | 0.816241 | 6.12E-52 | -1.69E-46 |
MS.gene060522 | MS.gene99937 | 0.818478 | 1.92E-52 | -1.69E-46 |
MS.gene060933 | MS.gene99937 | 0.826271 | 2.97E-54 | -1.69E-46 |
MS.gene060937 | MS.gene99937 | 0.81438 | 1.59E-51 | -1.69E-46 |
MS.gene061100 | MS.gene99937 | 0.804861 | 1.76E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 85 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGATGTGCATTCTTTAC+TGG | 0.168249 | 2.4:-143275 | MS.gene99937:CDS |
CTCAATCGGAAGCGATAATT+TGG | 0.177448 | 2.4:-139335 | MS.gene99937:CDS |
CAACTCAGGGTTGTTGTTGA+TGG | 0.270661 | 2.4:-143131 | MS.gene99937:CDS |
CTTACTACCCTTTGGTCCTT+TGG | 0.284264 | 2.4:-143564 | MS.gene99937:CDS |
GGAGAAGATGAAGATGATTT+AGG | 0.288495 | 2.4:+143665 | None:intergenic |
CTCTGGCGGAAAACATGTTT+GGG | 0.294043 | 2.4:-143522 | MS.gene99937:CDS |
TCCAATATGCTTCTTGTCCT+TGG | 0.300655 | 2.4:-143293 | MS.gene99937:CDS |
CTTATTGGGTATTGCTCCTT+TGG | 0.319778 | 2.4:-143486 | MS.gene99937:CDS |
ATACCACAAACATCGATATC+TGG | 0.329138 | 2.4:+137864 | None:intergenic |
CAAAGGAGCAATACCCAATA+AGG | 0.341740 | 2.4:+143487 | None:intergenic |
GGTTTACTTAATGCAACATT+TGG | 0.344265 | 2.4:-143404 | MS.gene99937:CDS |
TCTCTGGCGGAAAACATGTT+TGG | 0.353870 | 2.4:-143523 | MS.gene99937:CDS |
TGCTATCATGTTTGCTGTAA+AGG | 0.362095 | 2.4:-138005 | MS.gene99937:CDS |
GTCATCTTGCTTCCAATTGT+AGG | 0.377243 | 2.4:-138049 | MS.gene99937:CDS |
ATCCCCTTCTGTGTGGTTGT+TGG | 0.381081 | 2.4:-137660 | MS.gene99937:CDS |
TCCAAGGACAAGAAGCATAT+TGG | 0.388568 | 2.4:+143292 | None:intergenic |
AAAGAAGGAACCTGGTCAAC+TGG | 0.393990 | 2.4:+142944 | None:intergenic |
ATCTTCCTGCACTATTTCTC+TGG | 0.396428 | 2.4:-143539 | MS.gene99937:CDS |
TTTCCACAGGATATCACAAT+TGG | 0.399751 | 2.4:-137908 | MS.gene99937:intron |
CAAGCCTTTAAAATAATTTG+AGG | 0.409091 | 2.4:+136342 | None:intergenic |
ACTCACTCCGAAGTTCATCT+TGG | 0.409420 | 2.4:-143070 | MS.gene99937:CDS |
TCTGCGGCATTTCCTACAAT+TGG | 0.429263 | 2.4:+138037 | None:intergenic |
ATCAACATCTTACTACCCTT+TGG | 0.435660 | 2.4:-143572 | MS.gene99937:CDS |
TTGTTCACTACAATAACTTC+AGG | 0.440230 | 2.4:-143247 | MS.gene99937:CDS |
GTTGTTCAGCAATCTTTACT+TGG | 0.446219 | 2.4:-143326 | MS.gene99937:CDS |
TTCTACACCGGACCAACACT+TGG | 0.453893 | 2.4:-143428 | MS.gene99937:CDS |
GTTGTTGTTGATGGCTGTAA+TGG | 0.461660 | 2.4:-143122 | MS.gene99937:CDS |
CTCACTCCGAAGTTCATCTT+GGG | 0.462664 | 2.4:-143069 | MS.gene99937:CDS |
ATCACAATTGGAGTTGCTGT+TGG | 0.467118 | 2.4:-137896 | MS.gene99937:CDS |
TTGTTGTTGATGGCTGTAAT+GGG | 0.471034 | 2.4:-143121 | MS.gene99937:CDS |
GCAGCTGCTGTTGTCAACTC+AGG | 0.475580 | 2.4:-143145 | MS.gene99937:CDS |
CCTTCTGTGTGGTTGTTGGA+TGG | 0.484096 | 2.4:-137656 | MS.gene99937:CDS |
GCTCCTTTGGCTGAACGTCT+AGG | 0.490124 | 2.4:-143473 | MS.gene99937:CDS |
ACTGTACAGCTATACCTCTA+TGG | 0.490233 | 2.4:+139260 | None:intergenic |
GTATGGGTATCAGTGTTGTC+TGG | 0.492249 | 2.4:-139297 | MS.gene99937:CDS |
TCTACACCGGACCAACACTT+GGG | 0.501683 | 2.4:-143427 | MS.gene99937:CDS |
AGAACTTGAGTTAACTCAAT+CGG | 0.503816 | 2.4:-139349 | MS.gene99937:CDS |
AGGGAATGGTTGAAGAAAGA+AGG | 0.503994 | 2.4:+143644 | None:intergenic |
AACCCAGATATCGATGTTTG+TGG | 0.505182 | 2.4:-137867 | MS.gene99937:intron |
ATGGTGCATGGGAAAAGAAA+TGG | 0.517232 | 2.4:-137637 | MS.gene99937:CDS |
TGTGGTTGTTGGATGGTGCA+TGG | 0.523510 | 2.4:-137649 | MS.gene99937:CDS |
GGATGTGCATTCTTTACTGG+TGG | 0.525607 | 2.4:-143272 | MS.gene99937:CDS |
TTTGCTGATTCGTCTGGTGA+GGG | 0.529052 | 2.4:+143625 | None:intergenic |
CAGCTGCTGTTGTCAACTCA+GGG | 0.534453 | 2.4:-143144 | MS.gene99937:CDS |
GGTAGTTGCATTTATGATGC+AGG | 0.540460 | 2.4:-137565 | MS.gene99937:intron |
GATGTGCATTCTTTACTGGT+GGG | 0.541335 | 2.4:-143271 | MS.gene99937:CDS |
GTGGTTGTTGGATGGTGCAT+GGG | 0.544841 | 2.4:-137648 | MS.gene99937:CDS |
AGAGAAATAGTGCAGGAAGA+TGG | 0.546337 | 2.4:+143541 | None:intergenic |
TACCACAAACATCGATATCT+GGG | 0.548709 | 2.4:+137865 | None:intergenic |
CTACACCGGACCAACACTTG+GGG | 0.556277 | 2.4:-143426 | MS.gene99937:CDS |
TGATTCGTCTGGTGAGGGAA+TGG | 0.564065 | 2.4:+143630 | None:intergenic |
GACTTCTAAGTTGAAAGTAA+AGG | 0.565138 | 2.4:+142984 | None:intergenic |
CCATCCAACAACCACACAGA+AGG | 0.567175 | 2.4:+137656 | None:intergenic |
ATACCTTGTGGATGCCATAG+AGG | 0.575475 | 2.4:-139274 | MS.gene99937:intron |
TGAGTGAAATGAAGCACGGC+GGG | 0.575534 | 2.4:+143088 | None:intergenic |
TACACCGGACCAACACTTGG+GGG | 0.575655 | 2.4:-143425 | MS.gene99937:CDS |
GTAGCAGTATTAGCAGATGA+AGG | 0.582106 | 2.4:+143746 | None:intergenic |
TTCCTGCACTATTTCTCTGG+CGG | 0.587848 | 2.4:-143536 | MS.gene99937:CDS |
TAACCTAGACGTTCAGCCAA+AGG | 0.591654 | 2.4:+143470 | None:intergenic |
CATCCAACAACCACACAGAA+GGG | 0.594191 | 2.4:+137657 | None:intergenic |
GAGCAACTTGCTTTCTACAC+CGG | 0.596724 | 2.4:-143440 | MS.gene99937:CDS |
GAAGGTGAAGTTGAACTGAA+AGG | 0.597192 | 2.4:+143764 | None:intergenic |
TTCCGCCAGAGAAATAGTGC+AGG | 0.598512 | 2.4:+143534 | None:intergenic |
GAAGATGGCCAAAGGACCAA+AGG | 0.600542 | 2.4:+143556 | None:intergenic |
AAAGTAAAGGTAGCTTGCAT+AGG | 0.600612 | 2.4:+142997 | None:intergenic |
AAGATGGCCAAAGGACCAAA+GGG | 0.603293 | 2.4:+143557 | None:intergenic |
AAATCTTGATAGAGATAAGA+CGG | 0.604817 | 2.4:+143042 | None:intergenic |
AGCAATACCCAATAAGGCGA+AGG | 0.611495 | 2.4:+143493 | None:intergenic |
GTACATGTAGACCCTAAAAG+TGG | 0.612173 | 2.4:-136277 | None:intergenic |
CAGTAAAGAATGCACATCCA+AGG | 0.612732 | 2.4:+143276 | None:intergenic |
GAATCGAAATGAAAAGAGTG+TGG | 0.615322 | 2.4:+143701 | None:intergenic |
GGACTTCCCAAGATGAACTT+CGG | 0.619090 | 2.4:+143063 | None:intergenic |
ATCCAACAACCACACAGAAG+GGG | 0.630450 | 2.4:+137658 | None:intergenic |
TGAATCATTGAATATGTCAG+TGG | 0.638115 | 2.4:-138083 | MS.gene99937:CDS |
TAGCAGCTGCATAATGCTAG+TGG | 0.640892 | 2.4:-143020 | MS.gene99937:CDS |
GGTGTAGAAAGCAAGTTGCT+CGG | 0.647936 | 2.4:+143442 | None:intergenic |
TAGTGCAGGAAGATGGCCAA+AGG | 0.652333 | 2.4:+143548 | None:intergenic |
AAGTGAAAACTCTGACGAGG+AGG | 0.660035 | 2.4:-139373 | MS.gene99937:CDS |
TTTGTAGATCCCCTTCTGTG+TGG | 0.673448 | 2.4:-137667 | MS.gene99937:intron |
AGTGTTGTCTGGATACCTTG+TGG | 0.676735 | 2.4:-139286 | MS.gene99937:CDS |
GGAGTGAGTGAAATGAAGCA+CGG | 0.679307 | 2.4:+143084 | None:intergenic |
ATACCTCTATGGCATCCACA+AGG | 0.684822 | 2.4:+139271 | None:intergenic |
TACAAGTGAAAACTCTGACG+AGG | 0.708110 | 2.4:-139376 | MS.gene99937:CDS |
GATAGCACTTGCATGCTCTG+CGG | 0.744200 | 2.4:+138021 | None:intergenic |
GTGAGTGAAATGAAGCACGG+CGG | 0.755080 | 2.4:+143087 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 136278 | 143791 | 136278 | ID=MS.gene99937 |
chr2.4 | mRNA | 136278 | 143791 | 136278 | ID=MS.gene99937.t1;Parent=MS.gene99937 |
chr2.4 | exon | 143214 | 143791 | 143214 | ID=MS.gene99937.t1.exon1;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 143214 | 143791 | 143214 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 142955 | 143167 | 142955 | ID=MS.gene99937.t1.exon2;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 142955 | 143167 | 142955 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 139275 | 139406 | 139275 | ID=MS.gene99937.t1.exon3;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 139275 | 139406 | 139275 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 137997 | 138113 | 137997 | ID=MS.gene99937.t1.exon4;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 137997 | 138113 | 137997 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 137868 | 137921 | 137868 | ID=MS.gene99937.t1.exon5;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 137868 | 137921 | 137868 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 137566 | 137682 | 137566 | ID=MS.gene99937.t1.exon6;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 137566 | 137682 | 137566 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
chr2.4 | exon | 136278 | 136371 | 136278 | ID=MS.gene99937.t1.exon7;Parent=MS.gene99937.t1 |
chr2.4 | CDS | 136278 | 136371 | 136278 | ID=cds.MS.gene99937.t1;Parent=MS.gene99937.t1 |
Gene Sequence |
Protein sequence |