AlfalfaGEDB | MsG0380015277.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015277.01

KEGG: -
GO: -
PFAM: PF16561

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015277.01.T01	KEH34620.1	68.868	212	35	3	49	249	51	242	8.94E-89	273

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015277.01.T01	Q94AX2	48.571	210	77	3	51	249	88	277	3.67E-58	189

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015277.01.T01	A0A072V8V0	68.868	212	35	3	49	249	51	242	4.27e-89	273

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048400.01	MsG0380015277.01	0.822370	2.456115e-53	2.051987e-50
MsG0080048463.01	MsG0380015277.01	0.829909	3.953266e-55	4.102324e-52
MsG0080048464.01	MsG0380015277.01	0.812547	4.012606e-51	2.558769e-48
MsG0080048660.01	MsG0380015277.01	0.815501	8.949108e-52	6.181015e-49
MsG0080048826.01	MsG0380015277.01	0.816184	6.303376e-52	4.435620e-49
MsG0080049002.01	MsG0380015277.01	0.815611	8.459084e-52	5.860431e-49
MsG0180000184.01	MsG0380015277.01	0.820675	6.050750e-53	4.818923e-50
MsG0180000241.01	MsG0380015277.01	0.817362	3.430160e-52	2.492832e-49
MsG0180000784.01	MsG0380015277.01	0.815378	9.535254e-52	6.563120e-49
MsG0180000785.01	MsG0380015277.01	0.800648	1.305827e-48	6.112925e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015277.01.T01	MTR_3g065930	68.868	212	35	3	49	249	51	242	1.08e-92	273
MsG0380015277.01.T01	MTR_3g065930	69.194	211	34	3	50	249	111	301	7.97e-92	273
MsG0380015277.01.T01	MTR_3g065930	68.868	212	35	3	49	249	109	300	8.42e-92	273
MsG0380015277.01.T01	MTR_5g038210	37.143	140	70	5	109	248	400	521	3.20e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015277.01.T01	AT5G39790	48.095	210	81	3	51	249	88	280	2.30e-58	187
MsG0380015277.01.T01	AT5G39790	47.619	210	75	3	51	249	88	273	1.48e-57	184
MsG0380015277.01.T01	AT5G39790	43.519	108	37	2	51	158	88	171	2.43e-17	78.2
MsG0380015277.01.T01	AT1G27070	31.469	143	80	4	106	248	407	531	2.63e-11	63.5

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Find 48 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGCAAGTTTAAGATA+CGG	0.566701	3:+67775050	None:intergenic
AAATTGTATATAGCAGATAA+AGG	0.398487	3:-67776056	MsG0380015277.01.T01:intron
AATATACAGGTTCATACACA+AGG	0.697559	3:-67773533	MsG0380015277.01.T01:CDS
AATTCTTAGTAGATGGTGAA+TGG	0.533430	3:-67773377	MsG0380015277.01.T01:CDS
ACAACATTGATGCTTAGGCC+AGG	0.585747	3:-67773504	MsG0380015277.01.T01:CDS
ACAAGGTGGTTGAAATTTAC+TGG	0.275067	3:+67777818	None:intergenic
AGCTATTTCTTCTGCTAGTC+TGG	0.328497	3:+67774813	None:intergenic
AGCTTTGATGGTTGGAGTCA+AGG	0.484412	3:-67773573	MsG0380015277.01.T01:CDS
AGTGAAGCCAACCAGCAAAT+CGG	0.519833	3:-67775990	MsG0380015277.01.T01:CDS
AGTTACCTGTTACTGGTGAA+GGG	0.611786	3:-67773341	MsG0380015277.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATTCCCATCTTACAA+AGG	+	Chr3:67774193-67774212	None:intergenic	30.0%
AAATAGCCTCAAAATTGAGA+AGG	+	Chr3:67776274-67776293	None:intergenic	30.0%
AAGTAGAGTAAGAAGAAAAG+TGG	+	Chr3:67774133-67774152	None:intergenic	30.0%
AAGTATGATCCCGATAAAAT+GGG	-	Chr3:67775479-67775498	MsG0380015277.01.T01:intron	30.0%
AATATACAGGTTCATACACA+AGG	-	Chr3:67777669-67777688	MsG0380015277.01.T01:intron	30.0%
AATTCTTAGTAGATGGTGAA+TGG	-	Chr3:67777825-67777844	MsG0380015277.01.T01:CDS	30.0%
ACTTCCAAATATCGAGAATA+TGG	-	Chr3:67776756-67776775	MsG0380015277.01.T01:intron	30.0%
AGAGAATAGCTTCCATATAA+TGG	-	Chr3:67775990-67776009	MsG0380015277.01.T01:CDS	30.0%
AGCATTTGCTTCAAATGTTT+AGG	-	Chr3:67777155-67777174	MsG0380015277.01.T01:intron	30.0%
AGTAGAGTAAGAAGAAAAGT+GGG	+	Chr3:67774132-67774151	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	67773308	67777916	67773308	ID=MsG0380015277.01;Name=MsG0380015277.01
Chr3	mRNA	67773308	67777916	67773308	ID=MsG0380015277.01.T01;Parent=MsG0380015277.01;Name=MsG0380015277.01.T01;_AED=0.47;_eAED=0.66;_QI=0\|0\|0\|1\|0.33\|0.42\|7\|0\|249
Chr3	exon	67777807	67777916	67777807	ID=MsG0380015277.01.T01:exon:13530;Parent=MsG0380015277.01.T01
Chr3	exon	67777640	67777679	67777640	ID=MsG0380015277.01.T01:exon:13529;Parent=MsG0380015277.01.T01
Chr3	exon	67775972	67776065	67775972	ID=MsG0380015277.01.T01:exon:13528;Parent=MsG0380015277.01.T01
Chr3	exon	67774971	67775098	67774971	ID=MsG0380015277.01.T01:exon:13527;Parent=MsG0380015277.01.T01
Chr3	exon	67774738	67774842	67774738	ID=MsG0380015277.01.T01:exon:13526;Parent=MsG0380015277.01.T01
Chr3	exon	67773501	67773670	67773501	ID=MsG0380015277.01.T01:exon:13525;Parent=MsG0380015277.01.T01
Chr3	exon	67773308	67773410	67773308	ID=MsG0380015277.01.T01:exon:13524;Parent=MsG0380015277.01.T01
Chr3	CDS	67777807	67777916	67777807	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67777640	67777679	67777640	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67775972	67776065	67775972	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67774971	67775098	67774971	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67774738	67774842	67774738	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67773501	67773670	67773501	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01
Chr3	CDS	67773308	67773410	67773308	ID=MsG0380015277.01.T01:cds;Parent=MsG0380015277.01.T01

Gene Sequence

>MsG0380015277.01.T01

ATGGAAGCTAAACTTGTTATGTTTAAGTCATTCTTTATTCTAACTTTCGGAGGTTGTTGTAACTATCAATATCTGGCCAGTAAATTTCAACCACCTTGTTTAGAATATATGGAAGTAAAACCTCTTCATGATGGAAATAAGTATTGCAAGCAGATAAAGGCACTGCTTGCTGATACTGAAAGAGCAAACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAAATCGGTTCCTCAAAGACAGGTGTGGAAATATTCTTCTAGTAATTTGAGACCGTATCTTAAACTTGCCTCTTTTACTCTGCAGTTGTATATAAAGGAAGATGCGTTGGTAAAATTTAAAAGTGAACTTGCTGTCTTAGAGCTCGAAGTTCAGGCTTTGGCCAGACTAGCAGAAGAAATAGCTAAATCTGGTATTCCAGAAGGTTCAAGGAAGATCAACGGAAAGTACATTCATACTCACCTTGTTACTAGATTAAAGAAAATCAATGTGTCTGCTTATGTCTACATTGCTTGTTTGAACCTTTGTTTCCATCAGAGTGTGCAAGTTATGGGCAGCTTTGATGGTTGGAGTCAAGGAGAGCATCTTTCACCAGAATATACAGGTTCATACACAAGGTTCTCAACAACATTGATGCTTAGGCCAGGAAGGTATGAAATCAAATTCTTAGTAGATGGTGAATGGCACCTATCAACAGAGTTACCTGTTACTGGTGAAGGGTTAACGAAAAATAATTTGTTAATTGTTGAGTGA

Protein sequence

>MsG0380015277.01.T01

MEAKLVMFKSFFILTFGGCCNYQYLASKFQPPCLEYMEVKPLHDGNKYCKQIKALLADTERANSLRSLVKPTSKSVPQRQVWKYSSSNLRPYLKLASFTLQLYIKEDALVKFKSELAVLELEVQALARLAEEIAKSGIPEGSRKINGKYIHTHLVTRLKKINVSAYVYIACLNLCFHQSVQVMGSFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGEWHLSTELPVTGEGLTKNNLLIVE*