AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010148.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010148.01.T01 MTR_2g078530 92.308 663 29 6 1 661 67 709 0.0 1133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010148.01.T01 AT3G15095 51.899 158 58 5 503 647 242 394 1.97e-35 139
MsG0280010148.01.T01 AT3G15095 51.899 158 58 5 503 647 388 540 3.35e-35 140
MsG0280010148.01.T01 AT3G15095 51.899 158 58 5 503 647 520 672 8.18e-35 141

Find 142 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGAGGCTTCTTGTTTC+TGG -0.002846 2:+65347357 MsG0280010148.01.T01:CDS
TGATGGGTTTCTTCTGTTTC+TGG 0.052532 2:-65346711 None:intergenic
GAAGAAGCTATGAAAGTTTC+AGG 0.141713 2:-65346795 None:intergenic
TTTCTTCATCTTCTACTTGA+TGG 0.218943 2:-65346728 None:intergenic
GAGGATGCGGTTCAAGTTTC+CGG 0.253854 2:-65347385 None:intergenic
ATCTTTCTCTTCCTCTTCAT+TGG 0.260815 2:-65346586 None:intergenic
TGGCTACTTCATCAACTTCT+TGG 0.293941 2:-65346566 None:intergenic
TGTCCAATGCAAGTTACTTT+AGG 0.294705 2:-65345553 None:intergenic
TAGATCTGATCCTGTTAAAA+TGG 0.314155 2:+65346233 MsG0280010148.01.T01:CDS
GATACTTCCATTGAAAGTTT+AGG 0.318097 2:-65347014 None:intergenic
GAAAAGATACAAGAAGAATT+TGG 0.346922 2:+65346129 MsG0280010148.01.T01:CDS
TCAAGTACTCGACCCGGAAA+TGG 0.349198 2:+65346896 MsG0280010148.01.T01:CDS
GAGGAAAAGAGTAGCTTAGA+AGG 0.352452 2:+65345856 MsG0280010148.01.T01:CDS
GACCCGACAAGACCCATTTC+CGG 0.352963 2:-65346909 None:intergenic
ATCAACAAAAGAGCATTCTT+TGG 0.355071 2:-65346204 None:intergenic
ACCTGCCGGAGTGGAGAAAA+AGG 0.359468 2:+65347100 MsG0280010148.01.T01:CDS
TCCTGTTAAAATGGCTGCTT+TGG 0.359824 2:+65346242 MsG0280010148.01.T01:CDS
GTCGGAGCTCCGGCTGGTGT+TGG 0.363415 2:+65347425 MsG0280010148.01.T01:CDS
ACCCGACAAGACCCATTTCC+GGG 0.363469 2:-65346908 None:intergenic
TGAAGATCTTGATATTGATT+TGG 0.363834 2:+65346101 MsG0280010148.01.T01:CDS
TTCTTCATCTTCTACTTGAT+GGG 0.368571 2:-65346727 None:intergenic
CTATTCTGTCTAGTTAGATC+TGG 0.375754 2:-65345673 None:intergenic
CTTCTTGTTTCTGGAATAAC+CGG 0.377554 2:+65347366 MsG0280010148.01.T01:CDS
TTTCCGGGTCGAGTACTTGA+TGG 0.391723 2:-65346893 None:intergenic
GACCGGTGCCGGAATGTCTA+TGG 0.394618 2:+65347223 MsG0280010148.01.T01:CDS
TCGGAGCTCCGGCTGGTGTT+GGG 0.400805 2:+65347426 MsG0280010148.01.T01:CDS
GAGATCTTCATGTTGTTTGC+CGG 0.404192 2:+65347199 MsG0280010148.01.T01:CDS
GCTCCGACTCCAAGCGTTGC+CGG 0.405038 2:-65347410 None:intergenic
CATAGTCGCCATAGACATTC+CGG 0.407449 2:-65347231 None:intergenic
GCAGGCTTCACCTTAACTTT+CGG 0.408009 2:-65347152 None:intergenic
TGCATCAACGGCGGATGAGC+AGG 0.411748 2:-65347170 None:intergenic
GTCAAATGAAAGAGAGAAAG+AGG 0.421519 2:+65345837 MsG0280010148.01.T01:CDS
TTCAACTTTATCATCATCAA+TGG 0.422771 2:-65346640 None:intergenic
CATCCTCCTCCGGCAACGCT+TGG 0.424124 2:+65347401 MsG0280010148.01.T01:CDS
TTACAGCGCGTGAGAACAAA+TGG 0.424413 2:-65347302 None:intergenic
ATCATCAATAACAAACATTC+TGG 0.431143 2:-65346984 None:intergenic
GTTGTTCAAAATCTCGTAAT+GGG 0.435963 2:+65347273 MsG0280010148.01.T01:CDS
CAATGAACAAAGCATTGAAA+TGG 0.437116 2:+65346422 MsG0280010148.01.T01:CDS
GAGAGAAATTGAGGTGATGA+TGG 0.441037 2:+65345981 MsG0280010148.01.T01:CDS
GATGAAGATGAAAATGAAGT+TGG 0.444224 2:+65346606 MsG0280010148.01.T01:CDS
GACCCGGAAATGGGTCTTGT+CGG 0.446254 2:+65346906 MsG0280010148.01.T01:CDS
GGGTCAGCAGAGCGAGGAAA+TGG 0.446392 2:+65346927 MsG0280010148.01.T01:CDS
CAAGTTACTTTAGGTGATGA+AGG 0.455096 2:-65345544 None:intergenic
CAAGAACAAGAGGAGGATAG+TGG 0.456344 2:+65346342 MsG0280010148.01.T01:CDS
CAAGTACTCGACCCGGAAAT+GGG 0.470443 2:+65346897 MsG0280010148.01.T01:CDS
TCATGTTGTTTGCCGGTGAC+CGG 0.470939 2:+65347206 MsG0280010148.01.T01:CDS
TGCATTTGCAAGATGGTTGG+TGG 0.472132 2:+65345933 MsG0280010148.01.T01:CDS
GCTTCACCAATGTTTCCAAC+AGG 0.474788 2:+65345484 MsG0280010148.01.T01:CDS
TTTGATGATGTTCTTCAACT+TGG 0.475839 2:-65346305 None:intergenic
ACTTTAGGTGATGAAGGCTC+TGG 0.476462 2:-65345538 None:intergenic
TGTTCTCACGCGCTGTAAGT+CGG 0.481920 2:+65347307 MsG0280010148.01.T01:CDS
AACAAGAGTGTTTGAAACAT+AGG 0.481996 2:+65345728 MsG0280010148.01.T01:CDS
GACATTCCGGCACCGGTCAC+CGG 0.482056 2:-65347218 None:intergenic
TGAAACATAGGAATCAAAGA+TGG 0.482415 2:+65345740 MsG0280010148.01.T01:CDS
ACTCCAAGCGTTGCCGGAGG+AGG 0.482424 2:-65347404 None:intergenic
GGGTCGAGTACTTGATGGAT+TGG 0.482624 2:-65346888 None:intergenic
AGCGTTGCCGGAGGAGGATG+CGG 0.485071 2:-65347398 None:intergenic
CTTGGAGTCGGAGCTCCGGC+TGG 0.485673 2:+65347419 MsG0280010148.01.T01:CDS
CCCTAAAACCCAACACCAGC+CGG 0.487929 2:-65347434 None:intergenic
ATCTGCAAAACCGAAAGTTA+AGG 0.488790 2:+65347142 MsG0280010148.01.T01:CDS
AGAAGAGGAGTAAGATCTAG+TGG 0.493585 2:+65345880 MsG0280010148.01.T01:CDS
ACCCGGAAATGGGTCTTGTC+GGG 0.493633 2:+65346907 MsG0280010148.01.T01:CDS
TGTTTGCCGGTGACCGGTGC+CGG 0.496747 2:+65347212 MsG0280010148.01.T01:CDS
TGGAAAAGGGAGAGAAATTG+AGG 0.498384 2:+65345972 MsG0280010148.01.T01:CDS
TATCAAGATGGAGATGGAAA+AGG 0.498519 2:+65345958 MsG0280010148.01.T01:CDS
TCACCTAAAGTAACTTGCAT+TGG 0.499110 2:+65345550 MsG0280010148.01.T01:CDS
CGCCATAGACATTCCGGCAC+CGG 0.499830 2:-65347225 None:intergenic
GGTTGTTCAAAATCTCGTAA+TGG 0.499945 2:+65347272 MsG0280010148.01.T01:CDS
TTTCCACCTGTTGGAAACAT+TGG 0.500086 2:-65345490 None:intergenic
GTGTGAACCTAAACTTTCAA+TGG 0.500831 2:+65347007 MsG0280010148.01.T01:CDS
GATGAAAATGAAGTTGGTAA+TGG 0.503125 2:+65346612 MsG0280010148.01.T01:CDS
GTAGAAGAAGATGAAGAGAA+AGG 0.509757 2:+65346159 MsG0280010148.01.T01:CDS
GGCGACAAAGCTTGCGCCGG+AGG 0.509835 2:+65347343 MsG0280010148.01.T01:CDS
GATCTCGGCGGCTGCATCAA+CGG 0.511129 2:-65347182 None:intergenic
ACTTGAACCGCATCCTCCTC+CGG 0.514734 2:+65347391 MsG0280010148.01.T01:CDS
AGTAGCTTAGAAGGAAGAAG+AGG 0.516596 2:+65345865 MsG0280010148.01.T01:CDS
ATCAAGATGGAGATGGAAAA+GGG 0.516935 2:+65345959 MsG0280010148.01.T01:CDS
AAGAAGCTATGAAAGTTTCA+GGG 0.517355 2:-65346794 None:intergenic
GAAGAGAGAAAGGTGGTGAG+AGG 0.522506 2:+65346052 MsG0280010148.01.T01:CDS
TGATGAGATGGAGATGGTAA+TGG 0.525546 2:+65346011 MsG0280010148.01.T01:CDS
GTGAGAGGAGTTATAGTCAA+AGG 0.525983 2:+65346067 MsG0280010148.01.T01:CDS
AACAAAAGAGCATTCTTTGG+TGG 0.527738 2:-65346201 None:intergenic
AACGCTTGGAGTCGGAGCTC+CGG 0.528527 2:+65347415 MsG0280010148.01.T01:CDS
AGCTTTGTCGCCGACCTCAT+CGG 0.532627 2:-65347332 None:intergenic
CCTCCGGCAACGCTTGGAGT+CGG 0.534842 2:+65347407 MsG0280010148.01.T01:CDS
GATGATGGTGGAAGAGAGAA+AGG 0.538517 2:+65346042 MsG0280010148.01.T01:CDS
GAAACATAGGAATCAAAGAT+GGG 0.541335 2:+65345741 MsG0280010148.01.T01:CDS
AGCTGCATTTGCAAGATGGT+TGG 0.541489 2:+65345930 MsG0280010148.01.T01:CDS
TGGAAGTATCAAAGGAAACA+TGG 0.542217 2:+65347027 MsG0280010148.01.T01:CDS
AAGAGCAACGGTAGCATGAA+AGG 0.542510 2:+65345454 None:intergenic
TATGATTGAGCAGAAGTTGG+TGG 0.546810 2:+65347250 MsG0280010148.01.T01:CDS
GAAAGTTTCAGGGGAAGAAG+AGG 0.549912 2:-65346784 None:intergenic
CACCGGAAAACCTGCCGGAG+TGG 0.555491 2:+65347091 MsG0280010148.01.T01:CDS
TGTAGATGTTGAACATGAAG+AGG 0.558437 2:+65346374 MsG0280010148.01.T01:CDS
GTGGAGCTGCATTTGCAAGA+TGG 0.558468 2:+65345926 MsG0280010148.01.T01:CDS
AAAGCTTCACATATTGTCAA+AGG 0.559019 2:-65345772 None:intergenic
AGAAACAAGGGAAGAAAATG+AGG 0.559094 2:+65345593 MsG0280010148.01.T01:CDS
CCAACAGGTGGAAAGAAAAG+AGG 0.559340 2:+65345499 MsG0280010148.01.T01:CDS
ACTTTCAATGGAAGTATCAA+AGG 0.561200 2:+65347019 MsG0280010148.01.T01:CDS
TCACCAATGTTTCCAACAGG+TGG 0.562306 2:+65345487 MsG0280010148.01.T01:CDS
TGGTCTTGTTCTTTGTGAAG+AGG 0.564332 2:-65346285 None:intergenic
TGATGAAGTAGCCAATGAAG+AGG 0.567009 2:+65346575 MsG0280010148.01.T01:CDS
GGCAAACAACATGAAGATCT+CGG 0.567033 2:-65347197 None:intergenic
TGGTTGGTGGCTTATCAAGA+TGG 0.567695 2:+65345946 MsG0280010148.01.T01:CDS
ATCAACTAAAACACATGGAA+AGG 0.570735 2:-65346664 None:intergenic
GGTGGAAAGAAAAGAGGGTG+TGG 0.572456 2:+65345505 MsG0280010148.01.T01:CDS
AGATGTAGAACAAGAACAAG+AGG 0.574087 2:+65346332 MsG0280010148.01.T01:CDS
TTCCAGAAACAAGAAGCCTC+CGG 0.575555 2:-65347359 None:intergenic
AGTGGTGAACATAGCAGAGA+AGG 0.576142 2:+65345898 MsG0280010148.01.T01:CDS
AGACCCACCGGAAAACCTGC+CGG 0.587152 2:+65347086 MsG0280010148.01.T01:CDS
TGGTTACCGGAGAGACCCAC+CGG 0.587320 2:+65347074 MsG0280010148.01.T01:CDS
CAACAGGTGGAAAGAAAAGA+GGG 0.587348 2:+65345500 MsG0280010148.01.T01:CDS
AGGTCAAGATCAAAGAGAAG+AGG 0.587901 2:+65345613 MsG0280010148.01.T01:CDS
GTGGCTTATCAAGATGGAGA+TGG 0.589401 2:+65345952 MsG0280010148.01.T01:CDS
GACTATGATTGAGCAGAAGT+TGG 0.591224 2:+65347247 MsG0280010148.01.T01:CDS
GTCGGCGACAAAGCTTGCGC+CGG 0.591324 2:+65347340 MsG0280010148.01.T01:CDS
GGAGATGGTAATGGATGATG+AGG 0.591682 2:+65346020 MsG0280010148.01.T01:CDS
AAGATACAAGAAGAATTTGG+TGG 0.594472 2:+65346132 MsG0280010148.01.T01:CDS
TGTAGAACAAGAACAAGAGG+AGG 0.595254 2:+65346335 MsG0280010148.01.T01:CDS
AAGTGAAACACAAGCTAGTG+AGG 0.606236 2:+65346515 MsG0280010148.01.T01:CDS
GGAAGTATCAAAGGAAACAT+GGG 0.607650 2:+65347028 MsG0280010148.01.T01:CDS
GATGGAGCATCATGATGAGA+TGG 0.607946 2:+65345999 MsG0280010148.01.T01:CDS
ATGGATGATGAGGATGATGG+TGG 0.611699 2:+65346030 MsG0280010148.01.T01:CDS
GAGTGAAGACAAAGAAACAA+GGG 0.612252 2:+65345581 MsG0280010148.01.T01:CDS
CATAGCAGAGAAGGTTCATG+TGG 0.616326 2:+65345907 MsG0280010148.01.T01:CDS
TAAGTCGGAGCCGATGAGGT+CGG 0.620166 2:+65347322 MsG0280010148.01.T01:CDS
AGAGTGAAGACAAAGAAACA+AGG 0.623325 2:+65345580 MsG0280010148.01.T01:CDS
ATGATTGAGCAGAAGTTGGT+GGG 0.633317 2:+65347251 MsG0280010148.01.T01:CDS
GACATACAAGAAGACCTACA+AGG 0.637773 2:-65345817 None:intergenic
CTCGGCGGCTGCATCAACGG+CGG 0.646549 2:-65347179 None:intergenic
AGAAGCTATGAAAGTTTCAG+GGG 0.654222 2:-65346793 None:intergenic
GTAATGGATGATGAGGATGA+TGG 0.654575 2:+65346027 MsG0280010148.01.T01:CDS
AATCCATCAAGTACTCGACC+CGG 0.659870 2:+65346890 MsG0280010148.01.T01:CDS
GCATCATGATGAGATGGAGA+TGG 0.661675 2:+65346005 MsG0280010148.01.T01:CDS
GAGGAACAAGTAGAAGAACA+AGG 0.666204 2:+65346393 MsG0280010148.01.T01:CDS
CCGACTCCAAGCGTTGCCGG+AGG 0.666430 2:-65347407 None:intergenic
AGTGAATCAACTAAAACACA+TGG 0.674847 2:-65346669 None:intergenic
GATGGTGGAAGAGAGAAAGG+TGG 0.679136 2:+65346045 MsG0280010148.01.T01:CDS
GCTGTAAGTCGGAGCCGATG+AGG 0.689893 2:+65347318 MsG0280010148.01.T01:CDS
AGCAACGGTAGCATGAAAGG+TGG 0.689985 2:+65345457 None:intergenic
CTTGTCGGGTCAGCAGAGCG+AGG 0.693052 2:+65346921 MsG0280010148.01.T01:CDS
AAACAACATGAAGATCTCGG+CGG 0.798508 2:-65347194 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCATCAATAACAAACATTC+TGG - Chr2:65346987-65347006 None:intergenic 25.0%
! GAAAAGATACAAGAAGAATT+TGG + Chr2:65346129-65346148 MsG0280010148.01.T01:CDS 25.0%
! TTCAACTTTATCATCATCAA+TGG - Chr2:65346643-65346662 None:intergenic 25.0%
!! TGAAGATCTTGATATTGATT+TGG + Chr2:65346101-65346120 MsG0280010148.01.T01:CDS 25.0%
AAAGCTTCACATATTGTCAA+AGG - Chr2:65345775-65345794 None:intergenic 30.0%
AAGAAGCTATGAAAGTTTCA+GGG - Chr2:65346797-65346816 None:intergenic 30.0%
AAGATACAAGAAGAATTTGG+TGG + Chr2:65346132-65346151 MsG0280010148.01.T01:CDS 30.0%
AGAAGAAAAAGTTTCAACAG+AGG + Chr2:65346857-65346876 MsG0280010148.01.T01:CDS 30.0%
AGTGAATCAACTAAAACACA+TGG - Chr2:65346672-65346691 None:intergenic 30.0%
ATCAACTAAAACACATGGAA+AGG - Chr2:65346667-65346686 None:intergenic 30.0%
GAAACATAGGAATCAAAGAT+GGG + Chr2:65345741-65345760 MsG0280010148.01.T01:CDS 30.0%
GATACTTCCATTGAAAGTTT+AGG - Chr2:65347017-65347036 None:intergenic 30.0%
GATGAAGATGAAAATGAAGT+TGG + Chr2:65346606-65346625 MsG0280010148.01.T01:CDS 30.0%
GTTGTTCAAAATCTCGTAAT+GGG + Chr2:65347273-65347292 MsG0280010148.01.T01:CDS 30.0%
TAGATCTGATCCTGTTAAAA+TGG + Chr2:65346233-65346252 MsG0280010148.01.T01:CDS 30.0%
TGAAACATAGGAATCAAAGA+TGG + Chr2:65345740-65345759 MsG0280010148.01.T01:CDS 30.0%
TTCTTCATCTTCTACTTGAT+GGG - Chr2:65346730-65346749 None:intergenic 30.0%
TTTCTTCATCTTCTACTTGA+TGG - Chr2:65346731-65346750 None:intergenic 30.0%
!! AACAAGAGTGTTTGAAACAT+AGG + Chr2:65345728-65345747 MsG0280010148.01.T01:CDS 30.0%
!! ACTTTCAATGGAAGTATCAA+AGG + Chr2:65347019-65347038 MsG0280010148.01.T01:CDS 30.0%
!! ATCAACAAAAGAGCATTCTT+TGG - Chr2:65346207-65346226 None:intergenic 30.0%
!! CAATGAACAAAGCATTGAAA+TGG + Chr2:65346422-65346441 MsG0280010148.01.T01:CDS 30.0%
!! GATGAAAATGAAGTTGGTAA+TGG + Chr2:65346612-65346631 MsG0280010148.01.T01:CDS 30.0%
!! TTTGATGATGTTCTTCAACT+TGG - Chr2:65346308-65346327 None:intergenic 30.0%
!!! TATGCAGCACTGATTTTATA+CGG + Chr2:65347051-65347070 MsG0280010148.01.T01:CDS 30.0%
!!! TTAGTTGCTTTTTTCCTTGT+AGG + Chr2:65345803-65345822 MsG0280010148.01.T01:CDS 30.0%
AGAAACAAGGGAAGAAAATG+AGG + Chr2:65345593-65345612 MsG0280010148.01.T01:CDS 35.0%
AGAAGCTATGAAAGTTTCAG+GGG - Chr2:65346796-65346815 None:intergenic 35.0%
AGAGTGAAGACAAAGAAACA+AGG + Chr2:65345580-65345599 MsG0280010148.01.T01:CDS 35.0%
AGATGTAGAACAAGAACAAG+AGG + Chr2:65346332-65346351 MsG0280010148.01.T01:CDS 35.0%
ATCAAGATGGAGATGGAAAA+GGG + Chr2:65345959-65345978 MsG0280010148.01.T01:CDS 35.0%
ATCTGCAAAACCGAAAGTTA+AGG + Chr2:65347142-65347161 MsG0280010148.01.T01:CDS 35.0%
ATCTTTCTCTTCCTCTTCAT+TGG - Chr2:65346589-65346608 None:intergenic 35.0%
CTATTCTGTCTAGTTAGATC+TGG - Chr2:65345676-65345695 None:intergenic 35.0%
GAAGAAGCTATGAAAGTTTC+AGG - Chr2:65346798-65346817 None:intergenic 35.0%
GAGTGAAGACAAAGAAACAA+GGG + Chr2:65345581-65345600 MsG0280010148.01.T01:CDS 35.0%
GGTTGTTCAAAATCTCGTAA+TGG + Chr2:65347272-65347291 MsG0280010148.01.T01:CDS 35.0%
GTAGAAGAAGATGAAGAGAA+AGG + Chr2:65346159-65346178 MsG0280010148.01.T01:CDS 35.0%
GTCAAATGAAAGAGAGAAAG+AGG + Chr2:65345837-65345856 MsG0280010148.01.T01:CDS 35.0%
GTGTGAACCTAAACTTTCAA+TGG + Chr2:65347007-65347026 MsG0280010148.01.T01:CDS 35.0%
TATCAAGATGGAGATGGAAA+AGG + Chr2:65345958-65345977 MsG0280010148.01.T01:CDS 35.0%
TGTAGATGTTGAACATGAAG+AGG + Chr2:65346374-65346393 MsG0280010148.01.T01:CDS 35.0%
! AGAATGCTCTTTTGTTGATG+AGG + Chr2:65346208-65346227 MsG0280010148.01.T01:CDS 35.0%
! CAAGTTACTTTAGGTGATGA+AGG - Chr2:65345547-65345566 None:intergenic 35.0%
! TCACCTAAAGTAACTTGCAT+TGG + Chr2:65345550-65345569 MsG0280010148.01.T01:CDS 35.0%
! TGATTTTATACGGTGGTTAC+CGG + Chr2:65347061-65347080 MsG0280010148.01.T01:CDS 35.0%
! TGTCCAATGCAAGTTACTTT+AGG - Chr2:65345556-65345575 None:intergenic 35.0%
!! AACAAAAGAGCATTCTTTGG+TGG - Chr2:65346204-65346223 None:intergenic 35.0%
!! CTTCTTGTTTCTGGAATAAC+CGG + Chr2:65347366-65347385 MsG0280010148.01.T01:CDS 35.0%
!! GGAAGTATCAAAGGAAACAT+GGG + Chr2:65347028-65347047 MsG0280010148.01.T01:CDS 35.0%
!! TGGAAGTATCAAAGGAAACA+TGG + Chr2:65347027-65347046 MsG0280010148.01.T01:CDS 35.0%
AAACAACATGAAGATCTCGG+CGG - Chr2:65347197-65347216 None:intergenic 40.0%
AAGTGAAACACAAGCTAGTG+AGG + Chr2:65346515-65346534 MsG0280010148.01.T01:CDS 40.0%
AGAAGAGGAGTAAGATCTAG+TGG + Chr2:65345880-65345899 MsG0280010148.01.T01:CDS 40.0%
AGGTCAAGATCAAAGAGAAG+AGG + Chr2:65345613-65345632 MsG0280010148.01.T01:CDS 40.0%
AGTAGCTTAGAAGGAAGAAG+AGG + Chr2:65345865-65345884 MsG0280010148.01.T01:CDS 40.0%
CAACAGGTGGAAAGAAAAGA+GGG + Chr2:65345500-65345519 MsG0280010148.01.T01:CDS 40.0%
GAAGAGGTGATTCCCAAAAA+CGG - Chr2:65346272-65346291 None:intergenic 40.0%
GACATACAAGAAGACCTACA+AGG - Chr2:65345820-65345839 None:intergenic 40.0%
GACTATGATTGAGCAGAAGT+TGG + Chr2:65347247-65347266 MsG0280010148.01.T01:CDS 40.0%
GAGAGAAATTGAGGTGATGA+TGG + Chr2:65345981-65346000 MsG0280010148.01.T01:CDS 40.0%
GAGGAAAAGAGTAGCTTAGA+AGG + Chr2:65345856-65345875 MsG0280010148.01.T01:CDS 40.0%
GAGGAACAAGTAGAAGAACA+AGG + Chr2:65346393-65346412 MsG0280010148.01.T01:CDS 40.0%
GGCAAACAACATGAAGATCT+CGG - Chr2:65347200-65347219 None:intergenic 40.0%
GTGAGAGGAGTTATAGTCAA+AGG + Chr2:65346067-65346086 MsG0280010148.01.T01:CDS 40.0%
TATGATTGAGCAGAAGTTGG+TGG + Chr2:65347250-65347269 MsG0280010148.01.T01:CDS 40.0%
TCCTGTTAAAATGGCTGCTT+TGG + Chr2:65346242-65346261 MsG0280010148.01.T01:CDS 40.0%
TGATGAAGTAGCCAATGAAG+AGG + Chr2:65346575-65346594 MsG0280010148.01.T01:CDS 40.0%
TGATGAGATGGAGATGGTAA+TGG + Chr2:65346011-65346030 MsG0280010148.01.T01:CDS 40.0%
TGGAAAAGGGAGAGAAATTG+AGG + Chr2:65345972-65345991 MsG0280010148.01.T01:CDS 40.0%
TGGCTACTTCATCAACTTCT+TGG - Chr2:65346569-65346588 None:intergenic 40.0%
TGTAGAACAAGAACAAGAGG+AGG + Chr2:65346335-65346354 MsG0280010148.01.T01:CDS 40.0%
TTTCCACCTGTTGGAAACAT+TGG - Chr2:65345493-65345512 None:intergenic 40.0%
! ATGATTGAGCAGAAGTTGGT+GGG + Chr2:65347251-65347270 MsG0280010148.01.T01:CDS 40.0%
! GAGATCTTCATGTTGTTTGC+CGG + Chr2:65347199-65347218 MsG0280010148.01.T01:CDS 40.0%
!! GTAATGGATGATGAGGATGA+TGG + Chr2:65346027-65346046 MsG0280010148.01.T01:CDS 40.0%
!! TGATGGGTTTCTTCTGTTTC+TGG - Chr2:65346714-65346733 None:intergenic 40.0%
!! TGCTTTGGCTAACCGTTTTT+GGG + Chr2:65346257-65346276 MsG0280010148.01.T01:CDS 40.0%
!! TGGTCTTGTTCTTTGTGAAG+AGG - Chr2:65346288-65346307 None:intergenic 40.0%
!!! AGTTTTAGAAGAGGTGGTGA+AGG + Chr2:65345643-65345662 MsG0280010148.01.T01:CDS 40.0%
!!! GAAGCTAGTTTTAGAAGAGG+TGG + Chr2:65345637-65345656 MsG0280010148.01.T01:CDS 40.0%
!!! GGTGAAGCTAGTTTTAGAAG+AGG + Chr2:65345634-65345653 MsG0280010148.01.T01:CDS 40.0%
!!! GTTTTAGAAGAGGTGGTGAA+GGG + Chr2:65345644-65345663 MsG0280010148.01.T01:CDS 40.0%
AATCCATCAAGTACTCGACC+CGG + Chr2:65346890-65346909 MsG0280010148.01.T01:CDS 45.0%
ACTTTAGGTGATGAAGGCTC+TGG - Chr2:65345541-65345560 None:intergenic 45.0%
AGCTGCATTTGCAAGATGGT+TGG + Chr2:65345930-65345949 MsG0280010148.01.T01:CDS 45.0%
AGTGGAGAAAAAGGTCACAG+TGG + Chr2:65347109-65347128 MsG0280010148.01.T01:CDS 45.0%
AGTGGTGAACATAGCAGAGA+AGG + Chr2:65345898-65345917 MsG0280010148.01.T01:CDS 45.0%
CAAGAACAAGAGGAGGATAG+TGG + Chr2:65346342-65346361 MsG0280010148.01.T01:CDS 45.0%
CATAGCAGAGAAGGTTCATG+TGG + Chr2:65345907-65345926 MsG0280010148.01.T01:CDS 45.0%
CATAGTCGCCATAGACATTC+CGG - Chr2:65347234-65347253 None:intergenic 45.0%
CCAACAGGTGGAAAGAAAAG+AGG + Chr2:65345499-65345518 MsG0280010148.01.T01:CDS 45.0%
GAAAGTTTCAGGGGAAGAAG+AGG - Chr2:65346787-65346806 None:intergenic 45.0%
GCAGGCTTCACCTTAACTTT+CGG - Chr2:65347155-65347174 None:intergenic 45.0%
GCATCATGATGAGATGGAGA+TGG + Chr2:65346005-65346024 MsG0280010148.01.T01:CDS 45.0%
GCTTCACCAATGTTTCCAAC+AGG + Chr2:65345484-65345503 MsG0280010148.01.T01:CDS 45.0%
GTGGCTTATCAAGATGGAGA+TGG + Chr2:65345952-65345971 MsG0280010148.01.T01:CDS 45.0%
TCACCAATGTTTCCAACAGG+TGG + Chr2:65345487-65345506 MsG0280010148.01.T01:CDS 45.0%
TGCATTTGCAAGATGGTTGG+TGG + Chr2:65345933-65345952 MsG0280010148.01.T01:CDS 45.0%
TTACAGCGCGTGAGAACAAA+TGG - Chr2:65347305-65347324 None:intergenic 45.0%
TTCCAGAAACAAGAAGCCTC+CGG - Chr2:65347362-65347381 None:intergenic 45.0%
! ATGGATGATGAGGATGATGG+TGG + Chr2:65346030-65346049 MsG0280010148.01.T01:CDS 45.0%
! CCTCTTTTCTTTCCACCTGT+TGG - Chr2:65345502-65345521 None:intergenic 45.0%
! CTGCTTTGGCTAACCGTTTT+TGG + Chr2:65346256-65346275 MsG0280010148.01.T01:CDS 45.0%
! GATGGAGCATCATGATGAGA+TGG + Chr2:65345999-65346018 MsG0280010148.01.T01:CDS 45.0%
! TGTGACCTTTTTCTCCACTC+CGG - Chr2:65347108-65347127 None:intergenic 45.0%
!! GATGATGGTGGAAGAGAGAA+AGG + Chr2:65346042-65346061 MsG0280010148.01.T01:CDS 45.0%
!! GCCAAAGCAGCCATTTTAAC+AGG - Chr2:65346246-65346265 None:intergenic 45.0%
!! GGAGATGGTAATGGATGATG+AGG + Chr2:65346020-65346039 MsG0280010148.01.T01:CDS 45.0%
!! TGGTTGGTGGCTTATCAAGA+TGG + Chr2:65345946-65345965 MsG0280010148.01.T01:CDS 45.0%
!!! GCAGCACTGATTTTATACGG+TGG + Chr2:65347054-65347073 MsG0280010148.01.T01:CDS 45.0%
CAAGTACTCGACCCGGAAAT+GGG + Chr2:65346897-65346916 MsG0280010148.01.T01:CDS 50.0%
GAAGAGAGAAAGGTGGTGAG+AGG + Chr2:65346052-65346071 MsG0280010148.01.T01:CDS 50.0%
GGTGGAAAGAAAAGAGGGTG+TGG + Chr2:65345505-65345524 MsG0280010148.01.T01:CDS 50.0%
GTGGAGCTGCATTTGCAAGA+TGG + Chr2:65345926-65345945 MsG0280010148.01.T01:CDS 50.0%
TCAAGTACTCGACCCGGAAA+TGG + Chr2:65346896-65346915 MsG0280010148.01.T01:CDS 50.0%
TGTTCTCACGCGCTGTAAGT+CGG + Chr2:65347307-65347326 MsG0280010148.01.T01:CDS 50.0%
TTTCCGGGTCGAGTACTTGA+TGG - Chr2:65346896-65346915 None:intergenic 50.0%
! GAGGATGCGGTTCAAGTTTC+CGG - Chr2:65347388-65347407 None:intergenic 50.0%
! GGGTCGAGTACTTGATGGAT+TGG - Chr2:65346891-65346910 None:intergenic 50.0%
! TCATGTTGTTTGCCGGTGAC+CGG + Chr2:65347206-65347225 MsG0280010148.01.T01:CDS 50.0%
!! GATGGTGGAAGAGAGAAAGG+TGG + Chr2:65346045-65346064 MsG0280010148.01.T01:CDS 50.0%
ACCCGACAAGACCCATTTCC+GGG - Chr2:65346911-65346930 None:intergenic 55.0%
ACCTGCCGGAGTGGAGAAAA+AGG + Chr2:65347100-65347119 MsG0280010148.01.T01:CDS 55.0%
ACTTGAACCGCATCCTCCTC+CGG + Chr2:65347391-65347410 MsG0280010148.01.T01:CDS 55.0%
GACCCGACAAGACCCATTTC+CGG - Chr2:65346912-65346931 None:intergenic 55.0%
TAAGTCGGAGCCGATGAGGT+CGG + Chr2:65347322-65347341 MsG0280010148.01.T01:CDS 55.0%
! ACCCGGAAATGGGTCTTGTC+GGG + Chr2:65346907-65346926 MsG0280010148.01.T01:CDS 55.0%
! ACCTTTTTCTCCACTCCGGC+AGG - Chr2:65347104-65347123 None:intergenic 55.0%
! AGCTTTGTCGCCGACCTCAT+CGG - Chr2:65347335-65347354 None:intergenic 55.0%
! GACCCGGAAATGGGTCTTGT+CGG + Chr2:65346906-65346925 MsG0280010148.01.T01:CDS 55.0%
AACGCTTGGAGTCGGAGCTC+CGG + Chr2:65347415-65347434 MsG0280010148.01.T01:CDS 60.0%
AGACCCACCGGAAAACCTGC+CGG + Chr2:65347086-65347105 MsG0280010148.01.T01:CDS 60.0%
CGCCATAGACATTCCGGCAC+CGG - Chr2:65347228-65347247 None:intergenic 60.0%
GATCTCGGCGGCTGCATCAA+CGG - Chr2:65347185-65347204 None:intergenic 60.0%
GCTGTAAGTCGGAGCCGATG+AGG + Chr2:65347318-65347337 MsG0280010148.01.T01:CDS 60.0%
GGGTCAGCAGAGCGAGGAAA+TGG + Chr2:65346927-65346946 MsG0280010148.01.T01:CDS 60.0%
TGCATCAACGGCGGATGAGC+AGG - Chr2:65347173-65347192 None:intergenic 60.0%
TGGTTACCGGAGAGACCCAC+CGG + Chr2:65347074-65347093 MsG0280010148.01.T01:CDS 60.0%
! ACTCCGGCAGGTTTTCCGGT+GGG - Chr2:65347092-65347111 None:intergenic 60.0%
! CGCCGGAGGCTTCTTGTTTC+TGG + Chr2:65347357-65347376 MsG0280010148.01.T01:CDS 60.0%
! CTCCACTCCGGCAGGTTTTC+CGG - Chr2:65347096-65347115 None:intergenic 60.0%
! GACCGGTGCCGGAATGTCTA+TGG + Chr2:65347223-65347242 MsG0280010148.01.T01:CDS 60.0%
! GGTTTTCCGGTGGGTCTCTC+CGG - Chr2:65347083-65347102 None:intergenic 60.0%
AGCGTTGCCGGAGGAGGATG+CGG - Chr2:65347401-65347420 None:intergenic 65.0%
CACCGGAAAACCTGCCGGAG+TGG + Chr2:65347091-65347110 MsG0280010148.01.T01:CDS 65.0%
CATCCTCCTCCGGCAACGCT+TGG + Chr2:65347401-65347420 MsG0280010148.01.T01:CDS 65.0%
CCTCCGGCAACGCTTGGAGT+CGG + Chr2:65347407-65347426 MsG0280010148.01.T01:CDS 65.0%
CTTGTCGGGTCAGCAGAGCG+AGG + Chr2:65346921-65346940 MsG0280010148.01.T01:CDS 65.0%
GTCGGCGACAAAGCTTGCGC+CGG + Chr2:65347340-65347359 MsG0280010148.01.T01:CDS 65.0%
TCGGAGCTCCGGCTGGTGTT+GGG + Chr2:65347426-65347445 MsG0280010148.01.T01:CDS 65.0%
TGTTTGCCGGTGACCGGTGC+CGG + Chr2:65347212-65347231 MsG0280010148.01.T01:CDS 65.0%
! ACTCCAAGCGTTGCCGGAGG+AGG - Chr2:65347407-65347426 None:intergenic 65.0%
! CACTCCGGCAGGTTTTCCGG+TGG - Chr2:65347093-65347112 None:intergenic 65.0%
! GCTCCGACTCCAAGCGTTGC+CGG - Chr2:65347413-65347432 None:intergenic 65.0%
!! GACATTCCGGCACCGGTCAC+CGG - Chr2:65347221-65347240 None:intergenic 65.0%
CTCGGCGGCTGCATCAACGG+CGG - Chr2:65347182-65347201 None:intergenic 70.0%
CTTGGAGTCGGAGCTCCGGC+TGG + Chr2:65347419-65347438 MsG0280010148.01.T01:CDS 70.0%
GGCGACAAAGCTTGCGCCGG+AGG + Chr2:65347343-65347362 MsG0280010148.01.T01:CDS 70.0%
GTCGGAGCTCCGGCTGGTGT+TGG + Chr2:65347425-65347444 MsG0280010148.01.T01:CDS 70.0%
! CCGACTCCAAGCGTTGCCGG+AGG - Chr2:65347410-65347429 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 65345469 65347454 65345469 ID=MsG0280010148.01;Name=MsG0280010148.01
Chr2 mRNA 65345469 65347454 65345469 ID=MsG0280010148.01.T01;Parent=MsG0280010148.01;Name=MsG0280010148.01.T01;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|661
Chr2 exon 65345469 65347454 65345469 ID=MsG0280010148.01.T01:exon:18031;Parent=MsG0280010148.01.T01
Chr2 CDS 65345469 65347454 65345469 ID=MsG0280010148.01.T01:cds;Parent=MsG0280010148.01.T01
Gene Sequence

>MsG0280010148.01.T01

ATGAAAGGTGGTCAAGCTTCACCAATGTTTCCAACAGGTGGAAAGAAAAGAGGGTGTGGTTTTGAGAATCCAGAGCCTTCATCACCTAAAGTAACTTGCATTGGACAAGTTAGAGTGAAGACAAAGAAACAAGGGAAGAAAATGAGGTCAAGATCAAAGAGAAGAGGTGAAGCTAGTTTTAGAAGAGGTGGTGAAGGGACAAATCCAGATCTAACTAGACAGAATAGTCAAAGTTTGTATCAGAATCATCAAAGTTTGCAACAAGAGTGTTTGAAACATAGGAATCAAAGATGGGTTCATTTGCCTTTGACAATATGTGAAGCTTTGAGAGAGTTTAGTTGCTTTTTTCCTTGTAGGTCTTCTTGTATGTCAAATGAAAGAGAGAAAGAGGAAAAGAGTAGCTTAGAAGGAAGAAGAGGAGTAAGATCTAGTGGTGAACATAGCAGAGAAGGTTCATGTGGAGCTGCATTTGCAAGATGGTTGGTGGCTTATCAAGATGGAGATGGAAAAGGGAGAGAAATTGAGGTGATGATGGAGCATCATGATGAGATGGAGATGGTAATGGATGATGAGGATGATGGTGGAAGAGAGAAAGGTGGTGAGAGGAGTTATAGTCAAAGGAGACATATTTTTGAAGATCTTGATATTGATTTGGTTGATGAAAAGATACAAGAAGAATTTGGTGGTGAAGTAGAAGAAGATGAAGAGAAAGGTAGAGTTAGTATTTGTGTTCCACCAAAGAATGCTCTTTTGTTGATGAGGTGTAGATCTGATCCTGTTAAAATGGCTGCTTTGGCTAACCGTTTTTGGGAATCACCTCTTCACAAAGAACAAGACCAAGTTGAAGAACATCATCAAATTGAAGATGTAGAACAAGAACAAGAGGAGGATAGTGGAGATGAAAATGTAGATGTTGAACATGAAGAGGAACAAGTAGAAGAACAAGGTTACAACAATGAACAAAGCATTGAAATGGAGCAAGTTGAAGAAGAAACAAAACAAGTAGTAGAAGTTGAAAGAGTATCACAAGAAGATAGCATTTGTGAAAGTGAAACACAAGCTAGTGAGGAAAACAATGAAATTGAAAGTAAAATAAACCAAGAAGTTGATGAAGTAGCCAATGAAGAGGAAGAGAAAGATGAAGATGAAAATGAAGTTGGTAATGGAAATGCCATTGATGATGATAAAGTTGAAACCTTTCCATGTGTTTTAGTTGATTCACTTCATGCAGATCTTGAAAAACCAGAAACAGAAGAAACCCATCAAGTAGAAGATGAAGAAAAACAAGAAAGTTCAGAACTTTCTTCTTCATCTTCCTCTTCTTCCCCTGAAACTTTCATAGCTTCTTCAGAACAAGAAAACTATGAAGTAGAAGTAGAATCAGCAGCAGAAGAAAAAGTTTCAACAGAGGTAGAAGAACCAATCCATCAAGTACTCGACCCGGAAATGGGTCTTGTCGGGTCAGCAGAGCGAGGAAATGGAACAAAGAAAGAAGAGAGAGAAAGAGAAACATTGCCAGAATGTTTGTTATTGATGATGTGTGAACCTAAACTTTCAATGGAAGTATCAAAGGAAACATGGGTATGCAGCACTGATTTTATACGGTGGTTACCGGAGAGACCCACCGGAAAACCTGCCGGAGTGGAGAAAAAGGTCACAGTGGAATCATCTTCATCTGCAAAACCGAAAGTTAAGGTGAAGCCTGCTCATCCGCCGTTGATGCAGCCGCCGAGATCTTCATGTTGTTTGCCGGTGACCGGTGCCGGAATGTCTATGGCGACTATGATTGAGCAGAAGTTGGTGGGTTGTTCAAAATCTCGTAATGGGTATGAGCCATTTGTTCTCACGCGCTGTAAGTCGGAGCCGATGAGGTCGGCGACAAAGCTTGCGCCGGAGGCTTCTTGTTTCTGGAATAACCGGAAACTTGAACCGCATCCTCCTCCGGCAACGCTTGGAGTCGGAGCTCCGGCTGGTGTTGGGTTTTAG

Protein sequence

>MsG0280010148.01.T01

MKGGQASPMFPTGGKKRGCGFENPEPSSPKVTCIGQVRVKTKKQGKKMRSRSKRRGEASFRRGGEGTNPDLTRQNSQSLYQNHQSLQQECLKHRNQRWVHLPLTICEALREFSCFFPCRSSCMSNEREKEEKSSLEGRRGVRSSGEHSREGSCGAAFARWLVAYQDGDGKGREIEVMMEHHDEMEMVMDDEDDGGREKGGERSYSQRRHIFEDLDIDLVDEKIQEEFGGEVEEDEEKGRVSICVPPKNALLLMRCRSDPVKMAALANRFWESPLHKEQDQVEEHHQIEDVEQEQEEDSGDENVDVEHEEEQVEEQGYNNEQSIEMEQVEEETKQVVEVERVSQEDSICESETQASEENNEIESKINQEVDEVANEEEEKDEDENEVGNGNAIDDDKVETFPCVLVDSLHADLEKPETEETHQVEDEEKQESSELSSSSSSSSPETFIASSEQENYEVEVESAAEEKVSTEVEEPIHQVLDPEMGLVGSAERGNGTKKEERERETLPECLLLMMCEPKLSMEVSKETWVCSTDFIRWLPERPTGKPAGVEKKVTVESSSSAKPKVKVKPAHPPLMQPPRSSCCLPVTGAGMSMATMIEQKLVGCSKSRNGYEPFVLTRCKSEPMRSATKLAPEASCFWNNRKLEPHPPPATLGVGAPAGVGF*