AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001937.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001937.01.T01 MTR_4g459430 96.296 54 2 0 127 180 1 54 7.16e-29 110
MsG0180001937.01.T01 MTR_4g059530 96.296 54 2 0 127 180 1 54 7.16e-29 110
MsG0180001937.01.T01 MTR_6g072515 60.377 53 18 1 22 71 48 100 3.18e-14 68.2
MsG0180001937.01.T01 MTR_7g083290 63.462 52 16 2 23 71 143 194 8.75e-14 67.8
MsG0180001937.01.T01 MTR_4g105140 62.222 45 17 0 27 71 348 392 1.07e-12 66.6
MsG0180001937.01.T01 MTR_5g099210 43.056 72 30 2 5 73 8 71 1.76e-12 62.8
MsG0180001937.01.T01 MTR_5g027090 65.789 38 13 0 34 71 18 55 6.30e-12 58.9
MsG0180001937.01.T01 MTR_3g077360 52.830 53 20 2 23 71 6 57 2.39e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001937.01.T01 AT5G60590 56.250 80 33 1 101 180 26 103 1.64e-22 90.1
MsG0180001937.01.T01 AT5G60590 56.250 80 33 1 101 180 26 103 1.80e-22 90.5
MsG0180001937.01.T01 AT5G60590 56.250 80 33 1 101 180 26 103 4.58e-21 89.0

Find 54 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTGCTCTTGGCCATTTC+AGG 0.158941 1:-29576495 MsG0180001937.01.T01:CDS
AAATCTTCAATCATATAAAT+TGG 0.165866 1:-29576881 MsG0180001937.01.T01:CDS
GTTCAGGGGTGTGGGGATTT+TGG 0.207351 1:-29576535 MsG0180001937.01.T01:intron
TTTCTCTTTGGTTGTGCTCT+TGG 0.249986 1:-29576505 MsG0180001937.01.T01:CDS
ATCAAAATCAAAGAATTATA+AGG 0.251654 1:-29576172 MsG0180001937.01.T01:CDS
GTTGTCTCGGATTAATGTTT+TGG 0.303650 1:-29576817 MsG0180001937.01.T01:CDS
GGAAGTTGTGGATGAAATTA+AGG 0.305099 1:-29576859 MsG0180001937.01.T01:CDS
GCATGTTAAAAGATGCATTA+AGG 0.319128 1:+29575910 None:intergenic
TAATAAAATTCATATAAAAT+AGG 0.320453 1:+29575885 None:intergenic
GGAGCGGGTGGTTATTTGAT+TGG 0.326869 1:-29576474 MsG0180001937.01.T01:CDS
TCAAAATCAAAGAATTATAA+GGG 0.364451 1:-29576171 MsG0180001937.01.T01:CDS
GGTATGGTGGAGCCGACTTT+TGG 0.364841 1:+29578730 None:intergenic
GGTTATTTGATTGGGTGTTT+AGG 0.365155 1:-29576465 MsG0180001937.01.T01:CDS
GCAGCATAAGCATCTGTTGC+AGG 0.370889 1:+29576074 None:intergenic
ATGAAATTAAGGTGGTTTCC+TGG 0.373700 1:-29576848 MsG0180001937.01.T01:CDS
GTTCCCACTGATACATTGTA+TGG 0.386010 1:-29576011 MsG0180001937.01.T01:CDS
ATAACCACCCGCTCCTGAAA+TGG 0.400357 1:+29576482 None:intergenic
CTCTTGGCCATTTCAGGAGC+GGG 0.407309 1:-29576489 MsG0180001937.01.T01:CDS
AAGATGCATTAAGGATTTCA+AGG 0.411491 1:+29575919 None:intergenic
TGGCATGTTTATATTATGAA+TGG 0.422888 1:-29576797 MsG0180001937.01.T01:CDS
GAGCGGGTGGTTATTTGATT+GGG 0.439124 1:-29576473 MsG0180001937.01.T01:CDS
GCTGTTGAAGCTTTGAAAGC+TGG 0.445840 1:-29576047 MsG0180001937.01.T01:CDS
CCTGGAGATGGATGTTGTCT+CGG 0.446253 1:-29576830 MsG0180001937.01.T01:CDS
AATCTTCAATCATATAAATT+GGG 0.450839 1:-29576880 MsG0180001937.01.T01:CDS
CTGTTGAAGCTTTGAAAGCT+GGG 0.456752 1:-29576046 MsG0180001937.01.T01:CDS
TGGCGTGTGTTCGACGTTTG+CGG 0.477769 1:-29576199 MsG0180001937.01.T01:CDS
ATGGATTTGCTTGTGATGCT+TGG 0.478945 1:-29575992 MsG0180001937.01.T01:CDS
GTTTATATTATGAATGGAGA+TGG 0.488785 1:-29576791 MsG0180001937.01.T01:CDS
TTAAGGTGGTTTCCTGGAGA+TGG 0.490018 1:-29576842 MsG0180001937.01.T01:CDS
TCATATAAATTGGGAAGTTG+TGG 0.493696 1:-29576871 MsG0180001937.01.T01:CDS
TATTTCAGGGGTGTGTAAGT+TGG 0.495679 1:-29576219 MsG0180001937.01.T01:intron
GATTCATCTCTTGCTGTGGT+TGG 0.504138 1:-29578691 MsG0180001937.01.T01:intron
GAATCTGATGCACTACGAAC+CGG 0.511015 1:+29578709 None:intergenic
TTGGGTCTTGATATTAAGAC+TGG 0.527657 1:-29576107 MsG0180001937.01.T01:CDS
TACCTCAAAAGACAATCCTT+AGG 0.534707 1:+29576765 None:intergenic
TGATGCACTACGAACCGGTA+TGG 0.542602 1:+29578714 None:intergenic
CCGAGACAACATCCATCTCC+AGG 0.543504 1:+29576830 None:intergenic
TGAAGCTTTGAAAGCTGGGA+AGG 0.552138 1:-29576042 MsG0180001937.01.T01:CDS
ATCAGATTCATCTCTTGCTG+TGG 0.559261 1:-29578695 MsG0180001937.01.T01:CDS
AAAAGTCGGCTCCACCATAC+CGG 0.564801 1:-29578728 MsG0180001937.01.T01:CDS
TATTTGATTGGGTGTTTAGG+CGG 0.569421 1:-29576462 MsG0180001937.01.T01:intron
AGTTGTGGATGAAATTAAGG+TGG 0.571203 1:-29576856 MsG0180001937.01.T01:CDS
GCAACCACCATGCCAAAAGT+CGG 0.604492 1:-29578742 None:intergenic
AATCCATACAATGTATCAGT+GGG 0.615503 1:+29576008 None:intergenic
AACAGATGCTTATGCTGCAG+AGG 0.616578 1:-29576069 MsG0180001937.01.T01:CDS
TGCACTACGAACCGGTATGG+TGG 0.617961 1:+29578717 None:intergenic
GAGTATGGAAAGATGTGACT+TGG 0.622957 1:-29576126 MsG0180001937.01.T01:CDS
GCTCTTGGCCATTTCAGGAG+CGG 0.623988 1:-29576490 MsG0180001937.01.T01:CDS
TCTTGATATTAAGACTGGCG+TGG 0.625129 1:-29576102 MsG0180001937.01.T01:CDS
CAAAATCAAAGAATTATAAG+GGG 0.629389 1:-29576170 MsG0180001937.01.T01:CDS
AAATCCATACAATGTATCAG+TGG 0.641073 1:+29576007 None:intergenic
TTGGCCATTTCAGGAGCGGG+TGG 0.642603 1:-29576486 MsG0180001937.01.T01:CDS
TGAATGGAGATGGAATCCTA+AGG 0.668564 1:-29576781 MsG0180001937.01.T01:CDS
AGTATGGAAAGATGTGACTT+GGG 0.698493 1:-29576125 MsG0180001937.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTTCAATCATATAAAT+TGG - Chr1:29577736-29577755 MsG0180001937.01.T01:intron 15.0%
!! AATCTTCAATCATATAAATT+GGG - Chr1:29577737-29577756 MsG0180001937.01.T01:intron 15.0%
!! AATTTGAATTTAGATAAAAG+TGG - Chr1:29577103-29577122 MsG0180001937.01.T01:intron 15.0%
!! ATCAAAATCAAAGAATTATA+AGG - Chr1:29578445-29578464 MsG0180001937.01.T01:intron 15.0%
!! ATTTGAATTTAGATAAAAGT+GGG - Chr1:29577104-29577123 MsG0180001937.01.T01:intron 15.0%
!! CAAAAACAGAAAAAAAAAAT+AGG + Chr1:29578060-29578079 None:intergenic 15.0%
!! TCAAAATCAAAGAATTATAA+GGG - Chr1:29578446-29578465 MsG0180001937.01.T01:intron 15.0%
!!! AGAACTAAATTTTTTTTCTT+TGG - Chr1:29576384-29576403 MsG0180001937.01.T01:intron 15.0%
!!! ATTTTTTTTTTCTGTTTTTG+CGG - Chr1:29578060-29578079 MsG0180001937.01.T01:intron 15.0%
!!! CATATATATCAGAATTTTTA+TGG - Chr1:29576119-29576138 MsG0180001937.01.T01:CDS 15.0%
!!! TAAAAAAAGAATTTTGTTGT+TGG - Chr1:29576196-29576215 MsG0180001937.01.T01:CDS 15.0%
!!! TATAAGATTAGATCTAATTT+TGG - Chr1:29576034-29576053 MsG0180001937.01.T01:CDS 15.0%
!! AAGTAAGAATATGAGAAATT+TGG + Chr1:29577610-29577629 None:intergenic 20.0%
!! CAAAATCAAAGAATTATAAG+GGG - Chr1:29578447-29578466 MsG0180001937.01.T01:intron 20.0%
!! TTGATATTGTTACTGTTATT+GGG - Chr1:29577689-29577708 MsG0180001937.01.T01:intron 20.0%
!! TTTAATGTTTCGGATAAATA+CGG + Chr1:29577378-29577397 None:intergenic 20.0%
!!! ATGTATTATAGCAATTTTTC+AGG - Chr1:29576738-29576757 MsG0180001937.01.T01:intron 20.0%
!!! ATTCTTTGGCTTAATAAATT+TGG - Chr1:29578303-29578322 MsG0180001937.01.T01:intron 20.0%
!!! GAATATTCAATCTTGAATTT+TGG - Chr1:29576562-29576581 MsG0180001937.01.T01:intron 20.0%
!!! TGTATTATAGCAATTTTTCA+GGG - Chr1:29576739-29576758 MsG0180001937.01.T01:intron 20.0%
!!! TGTCAATCACAAATTATTTT+GGG - Chr1:29576522-29576541 MsG0180001937.01.T01:CDS 20.0%
!!! TTGTCAATCACAAATTATTT+TGG - Chr1:29576521-29576540 MsG0180001937.01.T01:CDS 20.0%
! AGGAAAGTAACATAGTTAAT+AGG - Chr1:29576359-29576378 MsG0180001937.01.T01:intron 25.0%
! ATCAAGAATGAAAAAACGAA+AGG + Chr1:29577674-29577693 None:intergenic 25.0%
! CCTGCAAAATAAAATTAAAG+AGG - Chr1:29576948-29576967 MsG0180001937.01.T01:intron 25.0%
! CTTGATATTGTTACTGTTAT+TGG - Chr1:29577688-29577707 MsG0180001937.01.T01:intron 25.0%
! GAAAACAGTTATGTAATTCA+GGG - Chr1:29577292-29577311 MsG0180001937.01.T01:intron 25.0%
! GTTTATATTATGAATGGAGA+TGG - Chr1:29577826-29577845 MsG0180001937.01.T01:intron 25.0%
! TGAAAACAGTTATGTAATTC+AGG - Chr1:29577291-29577310 MsG0180001937.01.T01:intron 25.0%
! TGGCATGTTTATATTATGAA+TGG - Chr1:29577820-29577839 MsG0180001937.01.T01:intron 25.0%
! TTAATGTTTCGGATAAATAC+GGG + Chr1:29577377-29577396 None:intergenic 25.0%
! TTTACTCTTAGCACAATATT+TGG - Chr1:29576074-29576093 MsG0180001937.01.T01:CDS 25.0%
!! ACTGTTTTCACTTATTACAA+AGG + Chr1:29577281-29577300 None:intergenic 25.0%
!! CTGTTTTCACTTATTACAAA+GGG + Chr1:29577280-29577299 None:intergenic 25.0%
!! GAAGATGAAGATTAGAATTT+TGG - Chr1:29576972-29576991 MsG0180001937.01.T01:intron 25.0%
!! TATGAGAAATTTGGTGAATT+TGG + Chr1:29577601-29577620 None:intergenic 25.0%
!! TCAACATTTTATCAAACACT+TGG - Chr1:29577566-29577585 MsG0180001937.01.T01:intron 25.0%
!!! ACAGATCTAATTTTTTTTGC+AGG + Chr1:29576660-29576679 None:intergenic 25.0%
!!! ATTAGAATTTTGGAAAGAGA+CGG - Chr1:29576982-29577001 MsG0180001937.01.T01:intron 25.0%
!!! ATTTGGGTTGTTTAATGTTT+CGG + Chr1:29577388-29577407 None:intergenic 25.0%
!!! CCTCTTTAATTTTATTTTGC+AGG + Chr1:29576951-29576970 None:intergenic 25.0%
AAATCCATACAATGTATCAG+TGG + Chr1:29578613-29578632 None:intergenic 30.0%
AACATTAAACAACCCAAATC+AGG - Chr1:29577389-29577408 MsG0180001937.01.T01:intron 30.0%
AAGATGCATTAAGGATTTCA+AGG + Chr1:29578701-29578720 None:intergenic 30.0%
AATATAGCTGTGTAAGGAAA+AGG - Chr1:29576339-29576358 MsG0180001937.01.T01:intron 30.0%
AATCCATACAATGTATCAGT+GGG + Chr1:29578612-29578631 None:intergenic 30.0%
ACCAATGATACTTGTATTTC+AGG - Chr1:29578384-29578403 MsG0180001937.01.T01:intron 30.0%
AGAATGAAAAAACGAAAGGA+AGG + Chr1:29577670-29577689 None:intergenic 30.0%
ATTCCAACTTCTACATTGAA+GGG + Chr1:29577177-29577196 None:intergenic 30.0%
CAATGATACTTGTATTTCAG+GGG - Chr1:29578386-29578405 MsG0180001937.01.T01:intron 30.0%
CCAATGATACTTGTATTTCA+GGG - Chr1:29578385-29578404 MsG0180001937.01.T01:intron 30.0%
GATGAAAATATAGCTGTGTA+AGG - Chr1:29576333-29576352 MsG0180001937.01.T01:intron 30.0%
GCATGTTAAAAGATGCATTA+AGG + Chr1:29578710-29578729 None:intergenic 30.0%
TAATGTTTCGGATAAATACG+GGG + Chr1:29577376-29577395 None:intergenic 30.0%
TCATATAAATTGGGAAGTTG+TGG - Chr1:29577746-29577765 MsG0180001937.01.T01:intron 30.0%
TGGTTTCTTTACACATTCTT+TGG - Chr1:29578289-29578308 MsG0180001937.01.T01:intron 30.0%
TGTAGAAAGAATGTAAGAGA+GGG - Chr1:29577046-29577065 MsG0180001937.01.T01:intron 30.0%
TTGTAGAAAGAATGTAAGAG+AGG - Chr1:29577045-29577064 MsG0180001937.01.T01:intron 30.0%
! GTGAGCTTTTTAACCAAAAT+CGG + Chr1:29577225-29577244 None:intergenic 30.0%
! TTTGAGGTTCCACATATATA+CGG - Chr1:29578194-29578213 MsG0180001937.01.T01:intron 30.0%
!! CTTATTACAAAGGGTACTAT+TGG + Chr1:29577271-29577290 None:intergenic 30.0%
!! TTACTGTTATTGGGTTTTGT+GGG - Chr1:29577698-29577717 MsG0180001937.01.T01:intron 30.0%
!!! AGGTTTTGGTGTTGTTTTTT+CGG - Chr1:29577880-29577899 MsG0180001937.01.T01:intron 30.0%
AAAAATAGGCACCCAATAAC+AGG + Chr1:29578046-29578065 None:intergenic 35.0%
AAAGAAACCACAAACTTGGA+CGG + Chr1:29578279-29578298 None:intergenic 35.0%
AACATATCCTCCATACAACA+AGG - Chr1:29577448-29577467 MsG0180001937.01.T01:intron 35.0%
AGCACAACCAAAGAGAAAAA+AGG + Chr1:29578110-29578129 None:intergenic 35.0%
AGGATATGTTCATCATCAAC+AGG + Chr1:29577438-29577457 None:intergenic 35.0%
AGTATGGAAAGATGTGACTT+GGG - Chr1:29578492-29578511 MsG0180001937.01.T01:intron 35.0%
AGTTGTGGATGAAATTAAGG+TGG - Chr1:29577761-29577780 MsG0180001937.01.T01:intron 35.0%
ATGAAATTAAGGTGGTTTCC+TGG - Chr1:29577769-29577788 MsG0180001937.01.T01:intron 35.0%
CATTCCAACTTCTACATTGA+AGG + Chr1:29577178-29577197 None:intergenic 35.0%
CCCTGAAATACAAGTATCAT+TGG + Chr1:29578388-29578407 None:intergenic 35.0%
CTTCAATGTAGAAGTTGGAA+TGG - Chr1:29577176-29577195 MsG0180001937.01.T01:intron 35.0%
GGAAGTTGTGGATGAAATTA+AGG - Chr1:29577758-29577777 MsG0180001937.01.T01:intron 35.0%
GGATATGTTCATCATCAACA+GGG + Chr1:29577437-29577456 None:intergenic 35.0%
GGTTATTTGATTGGGTGTTT+AGG - Chr1:29578152-29578171 MsG0180001937.01.T01:intron 35.0%
GTGTAAAGAAACCACAAACT+TGG + Chr1:29578283-29578302 None:intergenic 35.0%
TAAGAAAGAGAAGAAGCAGA+AGG + Chr1:29577546-29577565 None:intergenic 35.0%
TAAGTCTTCATGTCATGATG+AGG - Chr1:29575949-29575968 MsG0180001937.01.T01:CDS 35.0%
TACAAGTTGCCATATATACG+CGG + Chr1:29578244-29578263 None:intergenic 35.0%
TACCTCAAAAGACAATCCTT+AGG + Chr1:29577855-29577874 None:intergenic 35.0%
TATGTAATTCAGGGACAGTT+AGG - Chr1:29577301-29577320 MsG0180001937.01.T01:intron 35.0%
TATTTGATTGGGTGTTTAGG+CGG - Chr1:29578155-29578174 MsG0180001937.01.T01:intron 35.0%
TGTAGAAGTTGGAATGGTAT+TGG - Chr1:29577182-29577201 MsG0180001937.01.T01:intron 35.0%
TTGGGTCTTGATATTAAGAC+TGG - Chr1:29578510-29578529 MsG0180001937.01.T01:intron 35.0%
! ATCCTAAGGATTGTCTTTTG+AGG - Chr1:29577850-29577869 MsG0180001937.01.T01:intron 35.0%
! GTTACTGTTATTGGGTTTTG+TGG - Chr1:29577697-29577716 MsG0180001937.01.T01:intron 35.0%
! GTTGTCTCGGATTAATGTTT+TGG - Chr1:29577800-29577819 MsG0180001937.01.T01:intron 35.0%
! TGTTTCAAGTATGACAGTAG+TGG + Chr1:29575992-29576011 None:intergenic 35.0%
!!! TTTGGTGCCTTTTTTCTCTT+TGG - Chr1:29578100-29578119 MsG0180001937.01.T01:intron 35.0%
!!! TTTTCTGTTTTTGCGGTTCA+GGG - Chr1:29578067-29578086 MsG0180001937.01.T01:intron 35.0%
!!! TTTTTAGGAAGGGTGTTTTG+AGG - Chr1:29578178-29578197 MsG0180001937.01.T01:intron 35.0%
!!! TTTTTCTGTTTTTGCGGTTC+AGG - Chr1:29578066-29578085 MsG0180001937.01.T01:intron 35.0%
AACAGCTACTGTCCTGTTAT+TGG - Chr1:29578031-29578050 MsG0180001937.01.T01:intron 40.0%
AAGGAGAGATGAGAGAAATG+AGG - Chr1:29577015-29577034 MsG0180001937.01.T01:intron 40.0%
AAGGGGTTTCTCCAAAAACA+TGG - Chr1:29578464-29578483 MsG0180001937.01.T01:intron 40.0%
ACAGCTACTGTCCTGTTATT+GGG - Chr1:29578032-29578051 MsG0180001937.01.T01:intron 40.0%
AGGTTCCACATATATACGGT+TGG - Chr1:29578198-29578217 MsG0180001937.01.T01:intron 40.0%
ATCAGATTCATCTCTTGCTG+TGG - Chr1:29575922-29575941 MsG0180001937.01.T01:CDS 40.0%
GAGTATGGAAAGATGTGACT+TGG - Chr1:29578491-29578510 MsG0180001937.01.T01:intron 40.0%
GGACAGTAGCTGTTCAAAAA+CGG + Chr1:29578025-29578044 None:intergenic 40.0%
GGTTCCACATATATACGGTT+GGG - Chr1:29578199-29578218 MsG0180001937.01.T01:intron 40.0%
GTTCCACATATATACGGTTG+GGG - Chr1:29578200-29578219 MsG0180001937.01.T01:intron 40.0%
GTTCCCACTGATACATTGTA+TGG - Chr1:29578606-29578625 MsG0180001937.01.T01:intron 40.0%
GTTTCTCCAAAAACATGGCT+TGG - Chr1:29578469-29578488 MsG0180001937.01.T01:intron 40.0%
TATCCTCCATACAACAAGGA+CGG - Chr1:29577452-29577471 MsG0180001937.01.T01:intron 40.0%
TCTTGATATTAAGACTGGCG+TGG - Chr1:29578515-29578534 MsG0180001937.01.T01:intron 40.0%
TGAATGGAGATGGAATCCTA+AGG - Chr1:29577836-29577855 MsG0180001937.01.T01:intron 40.0%
TTTCTCTTTGGTTGTGCTCT+TGG - Chr1:29578112-29578131 MsG0180001937.01.T01:intron 40.0%
! ATGGATTTGCTTGTGATGCT+TGG - Chr1:29578625-29578644 MsG0180001937.01.T01:intron 40.0%
! CAAAAACATGGCTTGGAGTA+TGG - Chr1:29578476-29578495 MsG0180001937.01.T01:intron 40.0%
! CATACTCCAAGCCATGTTTT+TGG + Chr1:29578478-29578497 None:intergenic 40.0%
! CCTTGTGCTTTTCCTGATTT+GGG + Chr1:29577404-29577423 None:intergenic 40.0%
! TAGAAACCGTCCTTGTTGTA+TGG + Chr1:29577461-29577480 None:intergenic 40.0%
! TATTTCAGGGGTGTGTAAGT+TGG - Chr1:29578398-29578417 MsG0180001937.01.T01:intron 40.0%
!! AGTTGGAATGGTATTGGTTC+AGG - Chr1:29577188-29577207 MsG0180001937.01.T01:intron 40.0%
!! ATTGGGTTTTGTGGGAAGTA+AGG - Chr1:29577706-29577725 MsG0180001937.01.T01:intron 40.0%
!! CTGTTGAAGCTTTGAAAGCT+GGG - Chr1:29578571-29578590 MsG0180001937.01.T01:intron 40.0%
!! GTTGGAATGGTATTGGTTCA+GGG - Chr1:29577189-29577208 MsG0180001937.01.T01:intron 40.0%
!! GTTTAGGCGGTTTTTAGGAA+GGG - Chr1:29578168-29578187 MsG0180001937.01.T01:intron 40.0%
!! TGTTTAGGCGGTTTTTAGGA+AGG - Chr1:29578167-29578186 MsG0180001937.01.T01:intron 40.0%
!! TTGGAATGGTATTGGTTCAG+GGG - Chr1:29577190-29577209 MsG0180001937.01.T01:intron 40.0%
!! TTTGAGGTAAGTGGAGGTTT+TGG - Chr1:29577866-29577885 MsG0180001937.01.T01:intron 40.0%
!!! GGATTGTCTTTTGAGGTAAG+TGG - Chr1:29577857-29577876 MsG0180001937.01.T01:intron 40.0%
!!! TGGTGTTGTTTTTTCGGATG+AGG - Chr1:29577886-29577905 MsG0180001937.01.T01:intron 40.0%
!!! TTGTCTTTTGAGGTAAGTGG+AGG - Chr1:29577860-29577879 MsG0180001937.01.T01:intron 40.0%
!!! TTTCTGTTTTTGCGGTTCAG+GGG - Chr1:29578068-29578087 MsG0180001937.01.T01:intron 40.0%
AACAGATGCTTATGCTGCAG+AGG - Chr1:29578548-29578567 MsG0180001937.01.T01:intron 45.0%
AAGAGAAGAAGCAGAAGGAG+AGG + Chr1:29577541-29577560 None:intergenic 45.0%
AAGAGACGGAGACAATGAGA+AGG - Chr1:29576996-29577015 MsG0180001937.01.T01:intron 45.0%
CAACCCCAACCGTATATATG+TGG + Chr1:29578206-29578225 None:intergenic 45.0%
CTAAAGTGCACCTCGTAAGA+AGG + Chr1:29577494-29577513 None:intergenic 45.0%
CTGCCCTTCAATGTAGAAGT+TGG - Chr1:29577171-29577190 MsG0180001937.01.T01:intron 45.0%
GAAGAGACACTTTGCAGCAT+TGG - Chr1:29576889-29576908 MsG0180001937.01.T01:CDS 45.0%
GAATCTGATGCACTACGAAC+CGG + Chr1:29575911-29575930 None:intergenic 45.0%
GAGCGGGTGGTTATTTGATT+GGG - Chr1:29578144-29578163 MsG0180001937.01.T01:intron 45.0%
TATATACGCGGAACACCCAA+CGG + Chr1:29578232-29578251 None:intergenic 45.0%
TTAAGGTGGTTTCCTGGAGA+TGG - Chr1:29577775-29577794 MsG0180001937.01.T01:intron 45.0%
TTGGGTGTTCCGCGTATATA+TGG - Chr1:29578232-29578251 MsG0180001937.01.T01:intron 45.0%
! AAACCGTCCTTGTTGTATGG+AGG + Chr1:29577458-29577477 None:intergenic 45.0%
! CCCAAATCAGGAAAAGCACA+AGG - Chr1:29577401-29577420 MsG0180001937.01.T01:intron 45.0%
! GATTCATCTCTTGCTGTGGT+TGG - Chr1:29575926-29575945 MsG0180001937.01.T01:CDS 45.0%
! GCCTTGTGCTTTTCCTGATT+TGG + Chr1:29577405-29577424 None:intergenic 45.0%
! TGGGTGTTTAGGCGGTTTTT+AGG - Chr1:29578163-29578182 MsG0180001937.01.T01:intron 45.0%
!! GAGGTTTTGTGCAGCTGTTT+GGG - Chr1:29577905-29577924 MsG0180001937.01.T01:intron 45.0%
!! GCTGTTGAAGCTTTGAAAGC+TGG - Chr1:29578570-29578589 MsG0180001937.01.T01:intron 45.0%
!! TGAAGCTTTGAAAGCTGGGA+AGG - Chr1:29578575-29578594 MsG0180001937.01.T01:intron 45.0%
!! TGAGGTTTTGTGCAGCTGTT+TGG - Chr1:29577904-29577923 MsG0180001937.01.T01:intron 45.0%
!! TAATAAAATTCATATAAAAT+AGG + Chr1:29578735-29578754 None:intergenic 5.0%
ATAACCACCCGCTCCTGAAA+TGG + Chr1:29578138-29578157 None:intergenic 50.0%
CCTGGAGATGGATGTTGTCT+CGG - Chr1:29577787-29577806 MsG0180001937.01.T01:intron 50.0%
GCAGCATAAGCATCTGTTGC+AGG + Chr1:29578546-29578565 None:intergenic 50.0%
GGAGCGGGTGGTTATTTGAT+TGG - Chr1:29578143-29578162 MsG0180001937.01.T01:intron 50.0%
GTCAACGCTTCCTTCTTACG+AGG - Chr1:29577481-29577500 MsG0180001937.01.T01:intron 50.0%
GTTGTGCTCTTGGCCATTTC+AGG - Chr1:29578122-29578141 MsG0180001937.01.T01:intron 50.0%
TGATGCACTACGAACCGGTA+TGG + Chr1:29575906-29575925 None:intergenic 50.0%
! AAAAGTCGGCTCCACCATAC+CGG - Chr1:29575889-29575908 MsG0180001937.01.T01:CDS 50.0%
! CGCTTTTCCGTCCAAGTTTG+TGG - Chr1:29578269-29578288 MsG0180001937.01.T01:intron 50.0%
! GGGGTAGTCTAGTCCGATTT+TGG - Chr1:29577209-29577228 MsG0180001937.01.T01:intron 50.0%
! GTTTTGTGCAGCTGTTTGGG+CGG - Chr1:29577908-29577927 MsG0180001937.01.T01:intron 50.0%
!! TTTTCGGCCGGTTTTGTGCT+GGG - Chr1:29577966-29577985 MsG0180001937.01.T01:intron 50.0%
!! TTTTTGCGGTTCAGGGGTGT+GGG - Chr1:29578074-29578093 MsG0180001937.01.T01:intron 50.0%
ACAGCTGCCCAGCACAAAAC+CGG + Chr1:29577976-29577995 None:intergenic 55.0%
ACCTGCCAGGCACAAACAAC+CGG + Chr1:29577943-29577962 None:intergenic 55.0%
CAGCACAAAACCGGCCGAAA+AGG + Chr1:29577967-29577986 None:intergenic 55.0%
CCGAGACAACATCCATCTCC+AGG + Chr1:29577790-29577809 None:intergenic 55.0%
CTCTTGGCCATTTCAGGAGC+GGG - Chr1:29578128-29578147 MsG0180001937.01.T01:intron 55.0%
GCTCTTGGCCATTTCAGGAG+CGG - Chr1:29578127-29578146 MsG0180001937.01.T01:intron 55.0%
GGAGAGGAAGAGACTGACAG+TGG + Chr1:29577525-29577544 None:intergenic 55.0%
TGCACTACGAACCGGTATGG+TGG + Chr1:29575903-29575922 None:intergenic 55.0%
TGGCGTGTGTTCGACGTTTG+CGG - Chr1:29578418-29578437 MsG0180001937.01.T01:intron 55.0%
! GTGCCTGGCAGGTTCCTTTT+CGG - Chr1:29577950-29577969 MsG0180001937.01.T01:intron 55.0%
! GTTTTTGCGGTTCAGGGGTG+TGG - Chr1:29578073-29578092 MsG0180001937.01.T01:intron 55.0%
!! CTTTTCGGCCGGTTTTGTGC+TGG - Chr1:29577965-29577984 MsG0180001937.01.T01:intron 55.0%
!! GGTATGGTGGAGCCGACTTT+TGG + Chr1:29575890-29575909 None:intergenic 55.0%
!! GTTCAGGGGTGTGGGGATTT+TGG - Chr1:29578082-29578101 MsG0180001937.01.T01:intron 55.0%
!! TTGTGCCGGTTGTTTGTGCC+TGG - Chr1:29577935-29577954 MsG0180001937.01.T01:intron 55.0%
!! TTTTGCGGTTCAGGGGTGTG+GGG - Chr1:29578075-29578094 MsG0180001937.01.T01:intron 55.0%
ACGGTTGGGGTTGTCACCGT+TGG - Chr1:29578213-29578232 MsG0180001937.01.T01:intron 60.0%
CGGTTGGGGTTGTCACCGTT+GGG - Chr1:29578214-29578233 MsG0180001937.01.T01:intron 60.0%
GTTTGGGCGGCTGTTTGTGC+CGG - Chr1:29577921-29577940 MsG0180001937.01.T01:intron 60.0%
TTGGCCATTTCAGGAGCGGG+TGG - Chr1:29578131-29578150 MsG0180001937.01.T01:intron 60.0%
! CTGGCAGGTTCCTTTTCGGC+CGG - Chr1:29577954-29577973 MsG0180001937.01.T01:intron 60.0%
CGGCCGAAAAGGAACCTGCC+AGG + Chr1:29577956-29577975 None:intergenic 65.0%
GCCGGTTGTTTGTGCCTGGC+AGG - Chr1:29577939-29577958 MsG0180001937.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 29575884 29578755 29575884 ID=MsG0180001937.01;Name=MsG0180001937.01
Chr1 mRNA 29575884 29578755 29575884 ID=MsG0180001937.01.T01;Parent=MsG0180001937.01;Name=MsG0180001937.01.T01;_AED=0.42;_eAED=0.51;_QI=0|0.72|0.75|1|0.27|0.25|12|0|216
Chr1 exon 29575884 29576233 29575884 ID=MsG0180001937.01.T01:exon:42334;Parent=MsG0180001937.01.T01
Chr1 exon 29576463 29576551 29576463 ID=MsG0180001937.01.T01:exon:42333;Parent=MsG0180001937.01.T01
Chr1 exon 29576768 29576915 29576768 ID=MsG0180001937.01.T01:exon:42332;Parent=MsG0180001937.01.T01
Chr1 exon 29578692 29578755 29578692 ID=MsG0180001937.01.T01:exon:42331;Parent=MsG0180001937.01.T01
Chr1 CDS 29578692 29578755 29578692 ID=MsG0180001937.01.T01:cds;Parent=MsG0180001937.01.T01
Chr1 CDS 29576768 29576915 29576768 ID=MsG0180001937.01.T01:cds;Parent=MsG0180001937.01.T01
Chr1 CDS 29576463 29576551 29576463 ID=MsG0180001937.01.T01:cds;Parent=MsG0180001937.01.T01
Chr1 CDS 29575884 29576233 29575884 ID=MsG0180001937.01.T01:cds;Parent=MsG0180001937.01.T01
Gene Sequence

>MsG0180001937.01.T01

ATGCCAAAAGTCGGCTCCACCATACCGGTTCGTAGTGCATCAGATTCATCTCTTGCTGTGGTTGTAAGGAATAATAAAATCTTCAATCATATAAATTGGGAAGTTGTGGATGAAATTAAGGTGGTTTCCTGGAGATGGATGTTGTCTCGGATTAATGTTTTGGCATGTTTATATTATGAATGGAGATGGAATCCTAAGGATTGTCTTTTGAGGGGTGTGGGGATTTTGGTGCCTTTTTTCTCTTTGGTTGTGCTCTTGGCCATTTCAGGAGCGGGTGGTTATTTGATTGGGTGTTTAGGCGGGGTGTGTAAGTTGGCGTGTGTTCGACGTTTGCGGCAGAATCAAAATCAAAGAATTATAAGGGGTTTCTCCAAAAACATGGCTTGGAGTATGGAAAGATGTGACTTGGGTCTTGATATTAAGACTGGCGTGGTTCATCCTGCAACAGATGCTTATGCTGCAGAGGCTGTTGAAGCTTTGAAAGCTGGGAAGGTCATAGCTGTTCCCACTGATACATTGTATGGATTTGCTTGTGATGCTTGGTATGTATGCTATTTTAATTTTAATTTGTGCTTAAAATTTATTACATATAGCCTTGAAATCCTTAATGCATCTTTTAACATGCTTCCTATTTTATATGAATTTTATTAA
Protein sequence

>MsG0180001937.01.T01

MPKVGSTIPVRSASDSSLAVVVRNNKIFNHINWEVVDEIKVVSWRWMLSRINVLACLYYEWRWNPKDCLLRGVGILVPFFSLVVLLAISGAGGYLIGCLGGVCKLACVRRLRQNQNQRIIRGFSKNMAWSMERCDLGLDIKTGVVHPATDAYAAEAVEALKAGKVIAVPTDTLYGFACDAWYVCYFNFNLCLKFITYSLEILNASFNMLPILYEFY*