AlfalfaGEDB | MsG0380012321.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012321.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012321.01.T01	XP_013441915.2	81.179	1238	206	7	1	1216	1	1233	0	1957

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012321.01.T01	Q9LRR4	35.221	1042	581	24	1	979	4	1014	1.80E-178	563

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012321.01.T01	A0A396IJT6	81.179	1238	206	7	1	1216	1	1233	0.0	1957

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000091.01	MsG0380012321.01	0.822537	2.246721e-53	1.885928e-50
MsG0180000100.01	MsG0380012321.01	0.840254	9.713011e-58	1.375730e-54
MsG0180000116.01	MsG0380012321.01	0.825899	3.644920e-54	3.366406e-51
MsG0180001062.01	MsG0380012321.01	0.809863	1.533061e-50	9.102953e-48
MsG0180001937.01	MsG0380012321.01	0.803100	4.096145e-49	2.040494e-46
MsG0180004008.01	MsG0380012321.01	0.810066	1.386448e-50	8.276307e-48
MsG0180004088.01	MsG0380012321.01	0.801414	9.107399e-49	4.346620e-46
MsG0180004390.01	MsG0380012321.01	0.811732	6.041809e-51	3.769159e-48
MsG0180004486.01	MsG0380012321.01	0.807596	4.678368e-50	2.616349e-47
MsG0180005185.01	MsG0380012321.01	0.814323	1.633438e-51	1.092630e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012321.01.T01	MTR_0425s0020	81.018	1238	208	7	1	1216	1	1233	0.0	1956
MsG0380012321.01.T01	MTR_3g022600	80.769	1248	203	9	1	1216	1	1243	0.0	1949
MsG0380012321.01.T01	MTR_3g022300	78.381	1235	213	7	1	1216	1	1200	0.0	1841
MsG0380012321.01.T01	MTR_3g022230	71.684	1229	287	12	1	1214	1	1183	0.0	1597
MsG0380012321.01.T01	MTR_3g022230	66.741	448	136	5	773	1216	1141	1579	3.00e-164	536
MsG0380012321.01.T01	MTR_3g022230	38.144	485	231	20	773	1208	1006	1470	6.89e-55	211
MsG0380012321.01.T01	MTR_3g023030	67.504	1234	288	17	1	1216	1	1139	0.0	1486
MsG0380012321.01.T01	MTR_3g027200	66.531	1228	310	19	1	1216	1	1139	0.0	1456
MsG0380012321.01.T01	MTR_3g023030	65.316	1234	281	16	1	1216	1	1105	0.0	1422
MsG0380012321.01.T01	MTR_3g022130	65.617	1207	289	17	1	1197	1	1091	0.0	1383

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012321.01.T01	AT3G14470	35.221	1042	581	24	1	979	4	1014	1.84e-179	563
MsG0380012321.01.T01	AT3G14470	35.221	1042	581	24	1	979	4	1014	1.84e-179	563
MsG0380012321.01.T01	AT3G14460	36.383	918	525	20	5	882	1	899	1.17e-153	504
MsG0380012321.01.T01	AT3G14460	30.056	356	203	11	867	1217	1089	1403	1.46e-20	99.8
MsG0380012321.01.T01	AT3G50950	27.821	895	552	34	1	865	1	831	1.48e-70	255
MsG0380012321.01.T01	AT3G50950	27.821	895	552	34	1	865	1	831	1.48e-70	255
MsG0380012321.01.T01	AT1G58807	27.767	994	614	39	34	971	26	971	1.19e-65	243
MsG0380012321.01.T01	AT1G59124	27.767	994	614	39	34	971	26	971	1.19e-65	243
MsG0380012321.01.T01	AT1G58848	27.153	987	616	39	34	962	26	967	1.06e-64	240
MsG0380012321.01.T01	AT1G59218	27.153	987	616	39	34	962	26	967	1.06e-64	240

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Find 291 sgRNAs with CRISPR-Local

Find 519 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATTGGTTCAAGAG+AGG	0.649856	3:+14849693	MsG0380012321.01.T01:CDS
AAAAGAAAGTGTTAGGATTG+GGG	0.545801	3:+14846773	MsG0380012321.01.T01:CDS
AAAATAGTGGACAAGTGTGG+TGG	0.582656	3:+14847456	MsG0380012321.01.T01:CDS
AAACCAACTATGCTGATTAT+TGG	0.236387	3:-14846958	None:intergenic
AAACCCTCATTACTAGCACT+AGG	0.644909	3:-14846802	None:intergenic
AAACGACTTGAGAATTGCTT+TGG	0.397319	3:-14847100	None:intergenic
AAACGTGGAGTCCTTCCCAG+AGG	0.770799	3:+14849774	MsG0380012321.01.T01:CDS
AAAGAAAATGCCAAAGAATA+TGG	0.248008	3:+14848337	MsG0380012321.01.T01:CDS
AAAGCATATATGTGAAGAAT+TGG	0.361158	3:+14846551	MsG0380012321.01.T01:CDS
AAAGTGTTAGGATTGGGGAA+AGG	0.687893	3:+14846778	MsG0380012321.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGGTTTGACCAAAAGT+GGG	-	Chr3:14850102-14850121	None:intergenic	30.0%
AAAAATTGAAGGGACTTGAA+TGG	-	Chr3:14848845-14848864	None:intergenic	30.0%
AAATAAGCCAATTTGTGACA+TGG	+	Chr3:14850671-14850690	MsG0380012321.01.T01:intron	30.0%
AACAAGCTTAACTATAAGAC+TGG	+	Chr3:14852032-14852051	MsG0380012321.01.T01:CDS	30.0%
AAGAACATACAAACAGTAAG+AGG	-	Chr3:14852331-14852350	None:intergenic	30.0%
AAGACTCTAGGTTCAAAAAA+TGG	-	Chr3:14850630-14850649	None:intergenic	30.0%
AAGGTAGTAGATTTCCAAAT+TGG	+	Chr3:14848648-14848667	MsG0380012321.01.T01:CDS	30.0%
AAGTTAACTCTAATGAGTGT+AGG	+	Chr3:14852533-14852552	MsG0380012321.01.T01:intron	30.0%
AATACAAACCATGAGCAAAT+TGG	-	Chr3:14851518-14851537	None:intergenic	30.0%
AATCCACAAAGAATTGAGAT+TGG	-	Chr3:14849959-14849978	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	14846367	14853532	14846367	ID=MsG0380012321.01;Name=MsG0380012321.01
Chr3	mRNA	14846367	14853532	14846367	ID=MsG0380012321.01.T01;Parent=MsG0380012321.01;Name=MsG0380012321.01.T01;_AED=0.48;_eAED=0.50;_QI=0\|0\|0.2\|1\|1\|1\|5\|0\|1453
Chr3	exon	14846367	14850004	14846367	ID=MsG0380012321.01.T01:exon:21520;Parent=MsG0380012321.01.T01
Chr3	exon	14850221	14850312	14850221	ID=MsG0380012321.01.T01:exon:21521;Parent=MsG0380012321.01.T01
Chr3	exon	14851868	14852096	14851868	ID=MsG0380012321.01.T01:exon:21522;Parent=MsG0380012321.01.T01
Chr3	exon	14852782	14852902	14852782	ID=MsG0380012321.01.T01:exon:21523;Parent=MsG0380012321.01.T01
Chr3	exon	14853251	14853532	14853251	ID=MsG0380012321.01.T01:exon:21524;Parent=MsG0380012321.01.T01
Chr3	CDS	14846367	14850004	14846367	ID=MsG0380012321.01.T01:cds;Parent=MsG0380012321.01.T01
Chr3	CDS	14850221	14850312	14850221	ID=MsG0380012321.01.T01:cds;Parent=MsG0380012321.01.T01
Chr3	CDS	14851868	14852096	14851868	ID=MsG0380012321.01.T01:cds;Parent=MsG0380012321.01.T01
Chr3	CDS	14852782	14852902	14852782	ID=MsG0380012321.01.T01:cds;Parent=MsG0380012321.01.T01
Chr3	CDS	14853251	14853532	14853251	ID=MsG0380012321.01.T01:cds;Parent=MsG0380012321.01.T01

Gene Sequence

>MsG0380012321.01.T01

ATGGCAGAGTTGGTAGCCGGGGCATTTCTTCAGTCTTCCTTTCAAGTGATTATTGAGAAGTTGGCGTCTGTTCATATAAGAGACTACTTCAGTAGTGACAATGTTGATGCCCTTGCGAAAGAACTTAATATTAAACTCAATTCTATCAACCATGTGCTTGAAGAAGCAGAGCTGAAGCAGTACCAAAGCATATATGTGAAGAATTGGCTTGATGAACTTAAACATGTTCTTTATGAAGCAGACCAACTATTAGATGAGATTTCTACTGATGCAATGATAAATAAGCAAAAAGCTGAATCTGAACCACTTACCACCAATTTATTGGGTTTGGTTTTAGCTTTAACTACAAATCCATTTGAATCCAGGCTCAATGAACAATTGGATAAACTTGAACTTCTTGCAAAGGAAAAGAAAGTGTTAGGATTGGGGAAAGGTCCTAGTGCTAGTAATGAGGGTTTAGTCAGTCAGAAACCTTCAAAAAGATTGTCATCTACAGCTCTTGTGGATGAGTCAAGCATATATGGCAGGGATGTTCATAAGGAAAAACTGATCAAGTTTTTACTTGCAGGCAATGACAGTGGCAACCAGGTTCCAATAATCAGCATAGTTGGTTTAGGAGGGATGGGGAAAACCACCCTTGCTAAGCTTGTGTACAACGACAACAAGATAGAGGAGCATTTTGAGCTTAAAGCATGGGTCTATGTTTCAGAATCTTTTGATGTTGTTGGACTCACCAAAGCAATTCTCAAGTCGTTTAATTCTTCAACAGATGGTGAAGACTTGAATCTACTACAACATCAACTCCAACACATGCTAATGGGAAAGAAATACTTGCTTGTTTTAGATGATATCTGGAATGGGAAAACGGAATGTTGGGAGCAGTTACTACTTCCCTTTAACCATGGATCTTCTGGAAGTAAGATTATCGTGACAACACGTGAAAAGAAGGTAGCAGATCATGTCCTGAAATCCACCGAGTTAATTCATTTACATCAATTGGACAAAAGCAATTGTTGGAGTTTATTTGAGACACATGCTTTTCAAGGCATGCGTGTGTGTGACTATCCAAAACTTGAATCGATTGGCAGGAAAATAGTGGACAAGTGTGGTGGGTTGCCTTTAGCTATAAAATCATTGGGCCAACTTTTGCGAAAAAAGTTTTCTCAAGATGAATGGATGGAGATATTGGAGACTGATATGTGGCGTTTATCAGACGGGGACCACACCATTAACTCAGTACTGAGATTGAGTTACCATAATCTCCCTTCCAATCTAAAGTGTTGCTTTGCATATTGTTCTATTTTTCCCAAGGGTTATAAATTTAAAAAGGATGAATTGATCAAGCTTTGGATGGCAGAAGGTTTGTTGAAGTGTTTCGGATCGGACAAAAGGGAAGAGGATTTTGGTAATGAAATTTTTGGTGATCTTGAGTCAATTTCATTTTTCCAAAAATCAATTTATGAAATATATCGCACTACTTATGAGCACTATGTCATGCATGATCTTGTCAATGATTTAGCAAAATCAGTGTCACGAGAATTTTGTATCCAAATAGAGGATGCTAGGGTGGAATGTATCCTTGAAAAGACACGTCATATTTGGTTCTCTCTTCAATCAAATAGTGTTGATAAATTACAAGAGCTAACTTGTGAGGGACTACGTAGTCTGATGGTAAAAGAGCATACGTATTTAAGAAACAATGTGCAACACGATCTGTTTTCAAGACTAAAATGTTTGCGGATGTTATCATTTAGAGGTTGTGGTCTTTCAGAGGTAGTCGATGAGATAAGCAATTTACAACTTTTGCGTTACCTAGACCTTTCTGACACTGCGATTAAAAGCTTACCAGATACCATTTGTATGTTGTATAATTTGCAAACACTCTTGTTGAAAGGCTGTCATGAATTGACAGAGCTCCCTTCAAATTTTTCCAAACTCATCAATTTACGTCATCTTGAACTCCCTTGTATAAAGAAAATGCCAAAGAATATGGGAAAGCTAAATAATCTTCAGACCTTGTCATATTTTATTGTGGAAGCCCATAATGAATCTGATCTCAAAGATTTGGCAAAACTCAACCATCTTCATGGAACAATTCATATTAAAGGCTTGGGTAATGTCAGTGATACTGCAGATGCTGCCACATTAAATTTGAAAGATATAGAAGAATTACATACTGAGTTCAATGGCGGACGAGAAGAAATGGCTGAAAGTAACCTGTTAGTCTTGGAGGCTCTAAAACCAAATAGCAACTTGAAGAAGCTCAACATCACACACTACAAAGGTAGTAGATTTCCAAATTGGCTAACGAGTTGTCATTTACCCAACTTAGTATCTCTTCAACTGAAGGGTTGTAGATGTTCCTGTTTGCCACCACTTGGACAACTCCCTTCTCTCAAGAAACTTTCCATTTATGACTGTGAAGGAATAAAGATCATTGATGAAGAGTTTCATGGCAATAATTCAACAATTGTTCCATTCAAGTCCCTTCAATTTTTGATATTTGAGAATATGGTGAACTGGGAGGATTGGATATGTCTAAGGTTTCCTTTGCTTATAGAGCTTTCTATAACAAATTGTCCTAAATTGAAAAGCAGCTTGCCTCAACATCTTCCTTCTATACAAAAATTGAGTATTAGTGGTTGCAAAGAGTTGGAGGAATGGTTATGTCTTGAAGGGTTTCTTTCTCTTAAAGAGTTTTATATAAGACATTGTTCCAAATTCAAAAGGGTATTGCCTCAACATCTTCCTACTTTACAAAAACTGTATGTTTTTGATTGCAGCAAGTTGGAGGAATGGTTATGCCTTGGAGAGTTTCCTTTGCTTAAAGAGATTTCTATATTTAAATGTCCCAAATTGAAAAGGGCTCTGCCTCAACACCTTCCTTCTTTACAAAAACTGAATATTAGTGATTGCAAAAAGATGGAGGCAACAATTCCCAAGTGTGATAATATGATAGAGTTAGATATAGAGAGATGTGATAGAATTTTGGTAAATGAATTGCCGACGAGCCTGAAAAAGTTACTCCTTCGGCAAAATCGGTACACCGAGTTCTCTGTGGACCAAAATTTAATCAATTTTCCCTTTCTTGAAGAGTTGGGGTTGGATTGGAGTGGCTCTGTAAAATGTCCTTCTTTGGATTTACGTTGCTATAATTCTCTTTGGAGACTTTCAATAACAGGATGGGGATTCTCCTCCTTGCCTTTATCACTACCCTTGTTCACCAAACTTCATTATCTGCATCTGTACAATTGTCCAGAGCTGGAATCGTTTCCAATGGGTGGTTCGCCTTCCAACTTGTGGAACCTGGAAATATACAATTGCCCAAAACTGATTGGTTCAAGAGAGGAGTGGGGTTTGTTCCAATTCAATTCCTTGACATGGTTCATAGTTAGTGATGAGTTTGAAAACGTGGAGTCCTTCCCAGAGGAGAATCTGCTGCCACCATGTCTCACCCTTCTCCATTTGTTTAAATGTTCAAAGCTAAGAAAAATGAACAACAAGGGTTTTCTCCACCTCAAATCTCTCAGACATCTATGGATTAGCAGCTGCCCTAATCTTGAGCGCTTGCCAGAGAAGGAGGCTCTACCCAATCTCAATTCTTTGTGGATTGAAAATTGTCCAATAATAAAGGAGAAGCTAAGAAGGATTCTGCGTTTGGAATGGTGTGAGGGTAGTTTGGGAAATGATGATTGTGATGATTTTGTTAAGATTTATTTATTGGAGCATGGGAACTTTGGTGGATTCAATGGCTTCCAACTCGAGAAAAAACCACTGTCCTCATGGTGGATTGGAGCCTCCATGGTGTTTGGAACACAGTCTACATACAAAATTGGTTTGGAACATCTGATCCAAACATGTTTACTGCGTGCAACAGTTCTTCATTGTATCAAGAACAAGCTTAACTATAAGACTGGATTTGTTACAATCAGTGACTCTTACAATGATTCTTACCAAATCAAGATACTCATAAAAGACTTGGTCAGGATTGTCCCTGGGATAATGATGCCTATTGATCATTTTATAAAAGAAATATCAAAGATAACTACTATGCTCTCTGTAACTAACTCGCCAGAAGCCGTTGAGAAAGGAGAATCGATTGGCGTTCTCATTTCACAAGACGAGCACGAAGCAGGGTTGGCGGAATGCAAATGCAACCTCCATGGAAGATTGTCCTACAATAAGGGTGATGCTCCAATTACCACCAAAATTCTGCGTGAAAAGCTTTTGACAGCTTGGAAAGGAATCAAAAATTGGTCTGTAGTTTCTTTGGGAAGAAGTTTCTATGAATTCAAGTTTAGCTCAGTTGAAGATATGAGTAAAGTCTGGTCCTTGCGTTTGGTGAATCTCAAACAGGGTTGA

Protein sequence

>MsG0380012321.01.T01

MAELVAGAFLQSSFQVIIEKLASVHIRDYFSSDNVDALAKELNIKLNSINHVLEEAELKQYQSIYVKNWLDELKHVLYEADQLLDEISTDAMINKQKAESEPLTTNLLGLVLALTTNPFESRLNEQLDKLELLAKEKKVLGLGKGPSASNEGLVSQKPSKRLSSTALVDESSIYGRDVHKEKLIKFLLAGNDSGNQVPIISIVGLGGMGKTTLAKLVYNDNKIEEHFELKAWVYVSESFDVVGLTKAILKSFNSSTDGEDLNLLQHQLQHMLMGKKYLLVLDDIWNGKTECWEQLLLPFNHGSSGSKIIVTTREKKVADHVLKSTELIHLHQLDKSNCWSLFETHAFQGMRVCDYPKLESIGRKIVDKCGGLPLAIKSLGQLLRKKFSQDEWMEILETDMWRLSDGDHTINSVLRLSYHNLPSNLKCCFAYCSIFPKGYKFKKDELIKLWMAEGLLKCFGSDKREEDFGNEIFGDLESISFFQKSIYEIYRTTYEHYVMHDLVNDLAKSVSREFCIQIEDARVECILEKTRHIWFSLQSNSVDKLQELTCEGLRSLMVKEHTYLRNNVQHDLFSRLKCLRMLSFRGCGLSEVVDEISNLQLLRYLDLSDTAIKSLPDTICMLYNLQTLLLKGCHELTELPSNFSKLINLRHLELPCIKKMPKNMGKLNNLQTLSYFIVEAHNESDLKDLAKLNHLHGTIHIKGLGNVSDTADAATLNLKDIEELHTEFNGGREEMAESNLLVLEALKPNSNLKKLNITHYKGSRFPNWLTSCHLPNLVSLQLKGCRCSCLPPLGQLPSLKKLSIYDCEGIKIIDEEFHGNNSTIVPFKSLQFLIFENMVNWEDWICLRFPLLIELSITNCPKLKSSLPQHLPSIQKLSISGCKELEEWLCLEGFLSLKEFYIRHCSKFKRVLPQHLPTLQKLYVFDCSKLEEWLCLGEFPLLKEISIFKCPKLKRALPQHLPSLQKLNISDCKKMEATIPKCDNMIELDIERCDRILVNELPTSLKKLLLRQNRYTEFSVDQNLINFPFLEELGLDWSGSVKCPSLDLRCYNSLWRLSITGWGFSSLPLSLPLFTKLHYLHLYNCPELESFPMGGSPSNLWNLEIYNCPKLIGSREEWGLFQFNSLTWFIVSDEFENVESFPEENLLPPCLTLLHLFKCSKLRKMNNKGFLHLKSLRHLWISSCPNLERLPEKEALPNLNSLWIENCPIIKEKLRRILRLEWCEGSLGNDDCDDFVKIYLLEHGNFGGFNGFQLEKKPLSSWWIGASMVFGTQSTYKIGLEHLIQTCLLRATVLHCIKNKLNYKTGFVTISDSYNDSYQIKILIKDLVRIVPGIMMPIDHFIKEISKITTMLSVTNSPEAVEKGESIGVLISQDEHEAGLAECKCNLHGRLSYNKGDAPITTKILREKLLTAWKGIKNWSVVSLGRSFYEFKFSSVEDMSKVWSLRLVNLKQG*