AlfalfaGEDB | MsG0280010599.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010599.01

KEGG: K20855
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010599.01.T01	XP_003596979.1	60.87	161	30	2	1	128	1	161	5.68E-50	174

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010599.01.T01	A8MRC7	43.03	165	57	6	1	128	1	165	1.41E-30	115

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010599.01.T01	G7ITY6	60.870	161	30	2	1	128	1	161	2.71e-50	174

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047957.01	MsG0280010599.01	0.825582	4.333762e-54	3.966315e-51
MsG0080047958.01	MsG0280010599.01	0.826948	2.050124e-54	1.951092e-51
MsG0080047959.01	MsG0280010599.01	0.802093	6.607665e-49	3.208412e-46
MsG0080048383.01	MsG0280010599.01	0.801577	8.433013e-49	4.041421e-46
MsG0080048461.01	MsG0280010599.01	0.835695	1.444851e-56	1.780612e-53
MsG0080048462.01	MsG0280010599.01	0.812351	4.429334e-51	2.809757e-48
MsG0080048464.01	MsG0280010599.01	0.817116	3.895367e-52	2.811859e-49
MsG0080048672.01	MsG0280010599.01	0.833590	4.887014e-56	5.653619e-53
MsG0080048769.01	MsG0280010599.01	0.814652	1.381692e-51	9.324701e-49
MsG0080048774.01	MsG0280010599.01	0.809259	2.067050e-50	1.207851e-47

Showing 1 to 10 of 718 entries

Previous1 2 3 4 5…72Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010599.01.T01	MTR_2g088270	60.870	161	30	2	1	128	1	161	6.88e-54	174
MsG0280010599.01.T01	MTR_4g048320	48.193	166	49	4	1	129	1	166	9.52e-41	140
MsG0280010599.01.T01	MTR_4g048320	58.333	84	35	0	46	129	25	108	1.95e-27	103
MsG0280010599.01.T01	MTR_4g013305	41.732	127	67	4	8	128	11	136	3.06e-18	79.3
MsG0280010599.01.T01	MTR_3g073370	50.820	61	27	1	68	128	96	153	4.98e-12	62.0
MsG0280010599.01.T01	MTR_3g073370	50.820	61	27	1	68	128	97	154	4.99e-12	62.0
MsG0280010599.01.T01	MTR_4g035490	30.986	142	64	6	16	129	7	142	2.91e-11	59.7

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010599.01.T01	AT4G26940	43.046	151	52	3	12	128	16	166	1.97e-32	116
MsG0280010599.01.T01	AT1G05170	43.030	165	57	6	1	128	1	165	3.08e-32	117
MsG0280010599.01.T01	AT1G05170	43.030	165	57	6	1	128	1	165	1.44e-31	115
MsG0280010599.01.T01	AT4G26940	43.046	151	52	3	12	128	16	166	3.47e-31	114
MsG0280010599.01.T01	AT2G32430	40.120	167	61	5	1	128	1	167	9.11e-29	108
MsG0280010599.01.T01	AT1G11730	39.189	148	64	5	1	128	1	142	9.10e-21	86.3
MsG0280010599.01.T01	AT1G77810	35.507	138	70	2	10	128	5	142	1.11e-15	72.4
MsG0280010599.01.T01	AT1G32930	31.973	147	70	2	13	129	12	158	2.97e-15	71.2
MsG0280010599.01.T01	AT1G77810	34.043	141	71	2	10	128	5	145	3.41e-15	70.9
MsG0280010599.01.T01	AT1G22015	32.867	143	67	3	15	128	11	153	2.08e-11	60.1

Showing 1 to 10 of 10 entries

Previous1Next

Find 27 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCAAATAAAGCTATGACT+TGG	0.572489	2:-72031087	MsG0280010599.01.T01:exon
ACAAGTATAACGTGGCACAT+AGG	0.604489	2:-72031364	MsG0280010599.01.T01:five_prime_UTR
ACAGAGTAAGTACTCTGTTT+TGG	0.365386	2:+72031293	None:intergenic
AGAAGGTACCTAATGGTTAT+AGG	0.369031	2:-72029367	MsG0280010599.01.T01:CDS
AGACAAGACTATTTCAAATT+TGG	0.194182	2:-72029484	MsG0280010599.01.T01:CDS
AGACTATTTCAAATTTGGAA+TGG	0.493341	2:-72029479	MsG0280010599.01.T01:CDS
AGATAAGTGAATCAACTGTT+AGG	0.471693	2:-72029390	MsG0280010599.01.T01:CDS
AGCAAAGAACAAGTATAACG+TGG	0.730502	2:-72031372	MsG0280010599.01.T01:five_prime_UTR
AGTGCAGAAAAGAAGAAATT+TGG	0.300839	2:+72031243	None:intergenic
ATCTTCATATCTTCTGATAC+AGG	0.403107	2:+72029409	None:intergenic

Showing 1 to 10 of 27 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACCACAATAACTCA+AGG	+	Chr2:72030879-72030898	None:intergenic	30.0%
AAGAAAATTCATGTACCTGT+TGG	+	Chr2:72029774-72029793	None:intergenic	30.0%
AAGCAAATAAAGCTATGACT+TGG	-	Chr2:72029655-72029674	MsG0280010599.01.T01:intron	30.0%
AATTCATTATTAGGTGTCAG+AGG	+	Chr2:72030535-72030554	None:intergenic	30.0%
AGATAAGTGAATCAACTGTT+AGG	-	Chr2:72031352-72031371	MsG0280010599.01.T01:five_prime_UTR	30.0%
AGATAGGGTGAGAAAATTTA+AGG	+	Chr2:72030067-72030086	None:intergenic	30.0%
AGATGTGCCAATTCATTATT+AGG	+	Chr2:72030544-72030563	None:intergenic	30.0%
AGTGCAGAAAAGAAGAAATT+TGG	+	Chr2:72029502-72029521	None:intergenic	30.0%
ATCCATTTCATTTCTTCTGA+TGG	+	Chr2:72030209-72030228	None:intergenic	30.0%
ATCTTCATATCTTCTGATAC+AGG	+	Chr2:72031336-72031355	None:intergenic	30.0%

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	72029294	72031470	72029294	ID=MsG0280010599.01;Name=MsG0280010599.01
Chr2	mRNA	72029294	72031470	72029294	ID=MsG0280010599.01.T01;Parent=MsG0280010599.01;Name=MsG0280010599.01.T01;_AED=0.44;_eAED=0.44;_QI=375\|0.5\|0.66\|1\|0\|0.33\|3\|0\|129
Chr2	exon	72029294	72029512	72029294	ID=MsG0280010599.01.T01:exon:19533;Parent=MsG0280010599.01.T01
Chr2	exon	72029598	72029659	72029598	ID=MsG0280010599.01.T01:exon:19532;Parent=MsG0280010599.01.T01
Chr2	exon	72030987	72031470	72030987	ID=MsG0280010599.01.T01:exon:19531;Parent=MsG0280010599.01.T01
Chr2	five_prime_UTR	72031096	72031470	72031096	ID=MsG0280010599.01.T01:five_prime_utr;Parent=MsG0280010599.01.T01
Chr2	CDS	72030987	72031095	72030987	ID=MsG0280010599.01.T01:cds;Parent=MsG0280010599.01.T01
Chr2	CDS	72029598	72029659	72029598	ID=MsG0280010599.01.T01:cds;Parent=MsG0280010599.01.T01
Chr2	CDS	72029294	72029512	72029294	ID=MsG0280010599.01.T01:cds;Parent=MsG0280010599.01.T01

Gene Sequence

>MsG0280010599.01.T01

ATGACTTGGAAAAGTAGAGGAGAGGTTGTTCCTAGAAGCTTTATGTCTCAAAAATGGATGATTTTCTTGTGTATTGGAAGCTTCTGTGCTGGATGTTTTTCACCAACAGTTGCAAGAGAAGGAAGTGAAGCGCGATACGAAAGGCGTTTTCAAGACACAAAAAACCATACAAAACTTAGACAAGACTATTTCAAATTTGGAATGGAACTAGCTTCTGCTAAAGCAGCTCAAGAGTCTCTAAAAAGTGGTGCTCCTGTATCAGAAGATATGAAGATAAGTGAATCAACTGTTAGGAGAAGGTACCTAATGGTTATAGGAATTAACACTGCTTTTAGCAGCAGAAAAAGAAGAGATTCCGTTCGCGCCACTTGGATGCCACAAGGTTCATAA

Protein sequence

>MsG0280010599.01.T01

MTWKSRGEVVPRSFMSQKWMIFLCIGSFCAGCFSPTVAREGSEARYERRFQDTKNHTKLRQDYFKFGMELASAKAAQESLKSGAPVSEDMKISESTVRRRYLMVIGINTAFSSRKRRDSVRATWMPQGS*