AlfalfaGEDB | MsG0780041432.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041432.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041432.01.T01	XP_003626086.1	97.931	290	4	2	1	289	1	289	0	580

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041432.01.T01	G7KVG1	97.931	290	4	2	1	289	1	289	0.0	580

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047957.01	MsG0780041432.01	0.804341	2.263456e-49	1.164124e-46
MsG0080048058.01	MsG0780041432.01	0.807811	4.211193e-50	2.368452e-47
MsG0080048461.01	MsG0780041432.01	0.826321	2.892177e-54	2.703309e-51
MsG0080048464.01	MsG0780041432.01	0.802006	6.883021e-49	3.334726e-46
MsG0080048769.01	MsG0780041432.01	0.805106	1.566660e-49	8.218066e-47
MsG0080048809.01	MsG0780041432.01	-0.811819	5.785112e-51	3.617224e-48
MsG0180000091.01	MsG0780041432.01	0.833098	6.480277e-56	7.387874e-53
MsG0180000100.01	MsG0780041432.01	0.809108	2.226991e-50	1.296111e-47
MsG0180000114.01	MsG0780041432.01	0.858259	9.312404e-63	2.362461e-59
MsG0180000116.01	MsG0780041432.01	0.842754	2.131473e-58	3.263510e-55

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041432.01.T01	MTR_7g110880	97.931	290	4	2	1	289	1	289	0.0	580
MsG0780041432.01.T01	MTR_1g116590	49.275	69	33	2	214	280	41	109	3.75e-13	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041432.01.T01	AT2G46940	42.177	294	120	11	1	286	1	252	8.69e-52	171
MsG0780041432.01.T01	AT3G62070	45.594	261	90	12	37	289	12	228	6.27e-44	149
MsG0780041432.01.T01	AT4G01670	42.160	287	101	8	19	287	4	243	1.61e-42	146
MsG0780041432.01.T01	AT2G31560	41.489	94	28	2	214	280	102	195	3.29e-13	67.4
MsG0780041432.01.T01	AT2G31560	41.489	94	28	2	214	280	102	195	3.29e-13	67.4
MsG0780041432.01.T01	AT2G31560	41.489	94	28	2	214	280	102	195	3.29e-13	67.4
MsG0780041432.01.T01	AT2G43340	41.489	94	28	2	214	280	89	182	9.82e-13	65.9
MsG0780041432.01.T01	AT1G05870	42.105	95	27	3	214	280	88	182	3.25e-12	64.3
MsG0780041432.01.T01	AT1G05870	42.105	95	27	3	214	280	88	182	3.25e-12	64.3
MsG0780041432.01.T01	AT1G05870	42.105	95	27	3	214	280	88	182	3.25e-12	64.3

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Find 71 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACCATAACTTGTCA+AGG	0.567296	7:+90810924	MsG0780041432.01.T01:CDS
AAACTCCTATTCCCACCTTT+AGG	0.424753	7:-90811436	None:intergenic
AAATAGTTGGGAGAATTTAT+GGG	0.384282	7:+90811315	MsG0780041432.01.T01:CDS
AAATTGAGAATTACCGGGAC+CGG	0.564355	7:-90811602	None:intergenic
AATGAGAAGTGTGTTTGAAA+GGG	0.496838	7:+90811291	MsG0780041432.01.T01:CDS
AATTGGCGAATCTCCGGTCC+CGG	0.547996	7:+90811589	MsG0780041432.01.T01:CDS
ACAAAGGAAAGTGGTTTGGG+AGG	0.586780	7:+90811244	MsG0780041432.01.T01:CDS
ACACTTGATACTAGTAGTGG+TGG	0.643694	7:+90811550	MsG0780041432.01.T01:CDS
ACCAAACTCCTCCGTCTTGG+TGG	0.500700	7:-90811163	None:intergenic
ACCACCAAGACGGAGGAGTT+TGG	0.404035	7:+90811162	MsG0780041432.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAAAATTGAGAATTACC+GGG	-	Chr7:90811610-90811629	None:intergenic	30.0%
AGAAAAGAAACAAAGGAAAG+TGG	+	Chr7:90811235-90811254	MsG0780041432.01.T01:CDS	30.0%
ATCAGCTTCAAAACTTTCAA+TGG	-	Chr7:90811023-90811042	None:intergenic	30.0%
GAAATAGTTGGGAGAATTTA+TGG	+	Chr7:90811314-90811333	MsG0780041432.01.T01:CDS	30.0%
GAACCAAAATTGAGAATTAC+CGG	-	Chr7:90811611-90811630	None:intergenic	30.0%
GAGAAAGAGAAATTAGAGAA+TGG	+	Chr7:90811361-90811380	MsG0780041432.01.T01:CDS	30.0%
GTAATTCACCTATTGCTAAT+TGG	+	Chr7:90811572-90811591	MsG0780041432.01.T01:CDS	30.0%
TAAGCGCGTATCATATATTA+TGG	-	Chr7:90811751-90811770	None:intergenic	30.0%
TGAAGCAAGAAAAGAAACAA+AGG	+	Chr7:90811228-90811247	MsG0780041432.01.T01:CDS	30.0%
TTCATCTTGAATTGTGATCA+TGG	-	Chr7:90810846-90810865	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	90810780	90812013	90810780	ID=MsG0780041432.01;Name=MsG0780041432.01
Chr7	mRNA	90810780	90812013	90810780	ID=MsG0780041432.01.T01;Parent=MsG0780041432.01;Name=MsG0780041432.01.T01;_AED=0.29;_eAED=0.29;_QI=47\|1\|1\|1\|1\|1\|2\|102\|289
Chr7	exon	90810780	90811610	90810780	ID=MsG0780041432.01.T01:exon:3833;Parent=MsG0780041432.01.T01
Chr7	exon	90811826	90812013	90811826	ID=MsG0780041432.01.T01:exon:3834;Parent=MsG0780041432.01.T01
Chr7	five_prime_UTR	90810780	90810826	90810780	ID=MsG0780041432.01.T01:five_prime_utr;Parent=MsG0780041432.01.T01
Chr7	CDS	90810827	90811610	90810827	ID=MsG0780041432.01.T01:cds;Parent=MsG0780041432.01.T01
Chr7	CDS	90811826	90811911	90811826	ID=MsG0780041432.01.T01:cds;Parent=MsG0780041432.01.T01
Chr7	three_prime_UTR	90811912	90812013	90811912	ID=MsG0780041432.01.T01:three_prime_utr;Parent=MsG0780041432.01.T01

Gene Sequence

>MsG0780041432.01.T01

ATGGCTTCAGATGAGACCATGATCACAATTCAAGATGAAGACTTTGAAGAAGATGATGATGATTATATTAATGATGGGTTTGATCATCATCATAATCAAAATCACCATAACTTGTCAAGGCTTTCAGTTTGTACAAACAGCACTATATGTGATGATGTTGATAATCTAGCTTCCATGTGTATGTCACACTTGTCCATTGAAAGTTTTGAAGCTGATGGTGGTGATGAAGCAGATGGTGAATTTTCTGCTGATGGAAAAGATGATCAGTTACTACAACCAGGGTTGTCCTCTGGCTCTGAAAATGAATCAGGTAGTTGTTATTCGTTACCGGTGACACCACCAAGACGGAGGAGTTTGGTTCCAGTGAGTGTTGTTGGAGTGAAAGATTATGCAAGTGAGAATGAAGCAAGAAAAGAAACAAAGGAAAGTGGTTTGGGAGGTAGGAGAAGAAGGAGGAGAAGGAGAATGAGAAGTGTGTTTGAAAGGGGAAATAGTTGGGAGAATTTATGGGATCAGAAGAAGAAAATGATGAAAGAGAAAGAGAAATTAGAGAATGGTGTGAATAGTGGAGAGAGTGATCAGAGTACTGGGGTGATGGTGATTACTAGGCCTAAAGGTGGGAATAGGAGTTTGTGTATGGATTTGGAAGAAGTTAAAGCTTGTAGAGATCTTGGATTTGAGTTGGAACATGAAAGAATTTCTGCTGTTTCTTTCTCTAATTCAACACTTGATACTAGTAGTGGTGGTAATTCACCTATTGCTAATTGGCGAATCTCCGGTCCCGGTGATGATCCAAGAGATGTGAAGGCACGACTCAAAGTGTGGGCACAGGCAGTAGCAATAGCATCTGCCACCAAATACGGCTCATGA

Protein sequence

>MsG0780041432.01.T01

MASDETMITIQDEDFEEDDDDYINDGFDHHHNQNHHNLSRLSVCTNSTICDDVDNLASMCMSHLSIESFEADGGDEADGEFSADGKDDQLLQPGLSSGSENESGSCYSLPVTPPRRRSLVPVSVVGVKDYASENEARKETKESGLGGRRRRRRRRMRSVFERGNSWENLWDQKKKMMKEKEKLENGVNSGESDQSTGVMVITRPKGGNRSLCMDLEEVKACRDLGFELEHERISAVSFSNSTLDTSSGGNSPIANWRISGPGDDPRDVKARLKVWAQAVAIASATKYGS*