AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014706.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014706.01.T01 MTR_3g462790 98.452 323 3 2 1 322 1 322 0.0 661
MsG0380014706.01.T01 MTR_5g069710 67.173 329 79 9 1 322 1 307 2.69e-149 422
MsG0380014706.01.T01 MTR_7g067080 54.321 324 113 11 5 316 11 311 8.11e-105 309
MsG0380014706.01.T01 MTR_5g081860 64.975 197 55 4 27 221 16 200 2.31e-82 250
MsG0380014706.01.T01 MTR_1g111830 45.528 246 110 7 41 285 22 244 3.54e-59 190
MsG0380014706.01.T01 MTR_4g111975 46.667 210 75 4 43 221 8 211 4.15e-52 174
MsG0380014706.01.T01 MTR_8g063600 46.561 189 90 2 35 221 2 181 5.47e-51 171
MsG0380014706.01.T01 MTR_8g063870 41.304 184 85 3 40 221 5 167 3.70e-40 142
MsG0380014706.01.T01 MTR_2g100930 48.322 149 59 5 143 274 104 251 8.27e-33 124
MsG0380014706.01.T01 MTR_4g100630 60.000 100 38 1 122 221 71 168 6.46e-32 121
MsG0380014706.01.T01 MTR_6g092540 73.611 72 19 0 142 213 91 162 5.12e-31 118
MsG0380014706.01.T01 MTR_4g015130 76.119 67 16 0 158 224 3 69 2.03e-30 110
MsG0380014706.01.T01 MTR_8g101650 70.270 74 21 1 140 213 97 169 3.86e-30 115
MsG0380014706.01.T01 MTR_5g037080 68.966 87 25 1 135 221 91 175 5.74e-30 116
MsG0380014706.01.T01 MTR_4g107230 61.702 94 32 1 136 229 72 161 1.85e-28 111
MsG0380014706.01.T01 MTR_5g088010 50.980 102 44 3 118 216 32 130 8.69e-25 100
MsG0380014706.01.T01 MTR_0036s0260 64.179 67 24 0 148 214 28 94 1.08e-23 97.1
MsG0380014706.01.T01 MTR_1g033620 79.310 58 12 0 164 221 21 78 1.14e-23 97.8
MsG0380014706.01.T01 MTR_3g104370 58.025 81 27 2 145 218 88 168 2.05e-23 96.7
MsG0380014706.01.T01 MTR_2g090305 64.179 67 24 0 148 214 28 94 5.44e-23 94.4
MsG0380014706.01.T01 MTR_1g033600 37.313 134 77 2 35 162 4 136 8.23e-23 92.4
MsG0380014706.01.T01 MTR_5g027570 61.333 75 26 2 144 216 88 161 1.79e-22 94.4
MsG0380014706.01.T01 MTR_5g088060 65.714 70 20 2 150 216 274 342 2.13e-22 97.4
MsG0380014706.01.T01 MTR_5g488160 65.714 70 20 2 150 216 274 342 2.13e-22 97.4
MsG0380014706.01.T01 MTR_5g075760 36.000 175 88 5 35 204 5 160 3.14e-22 93.2
MsG0380014706.01.T01 MTR_5g075790 35.263 190 90 8 20 204 7 168 6.21e-22 92.4
MsG0380014706.01.T01 MTR_5g027550 60.526 76 27 1 144 216 73 148 3.13e-20 88.2
MsG0380014706.01.T01 MTR_5g020170 50.000 68 34 0 38 105 14 81 1.58e-19 82.4
MsG0380014706.01.T01 MTR_3g116720 57.576 66 28 0 43 108 16 81 1.77e-19 81.6
MsG0380014706.01.T01 MTR_1g022290 52.857 70 33 0 40 109 4 73 3.07e-19 81.6
MsG0380014706.01.T01 MTR_3g111880 48.052 77 40 0 40 116 4 80 1.03e-18 80.1
MsG0380014706.01.T01 MTR_8g077380 52.778 72 33 1 40 111 2 72 1.07e-18 79.3
MsG0380014706.01.T01 MTR_8g077390 52.778 72 33 1 40 111 2 72 1.07e-18 79.3
MsG0380014706.01.T01 MTR_8g077360 54.412 68 30 1 40 107 2 68 1.23e-18 79.3
MsG0380014706.01.T01 MTR_1g048660 56.250 64 28 0 149 212 13 76 1.35e-18 79.7
MsG0380014706.01.T01 MTR_6g004250 49.254 67 34 0 40 106 7 73 9.62e-16 71.6
MsG0380014706.01.T01 MTR_5g020540 55.738 61 26 1 43 103 4 63 2.61e-15 70.1
MsG0380014706.01.T01 MTR_8g077420 52.174 69 31 2 43 111 5 71 2.95e-15 70.1
MsG0380014706.01.T01 MTR_3g013440 50.704 71 34 1 36 105 3 73 1.47e-14 68.6
MsG0380014706.01.T01 MTR_7g089210 52.308 65 31 0 47 111 16 80 3.53e-14 67.4
MsG0380014706.01.T01 MTR_3g070110 50.667 75 30 1 150 217 97 171 4.03e-14 70.9
MsG0380014706.01.T01 MTR_1g083180 52.113 71 29 2 150 216 63 132 2.45e-13 67.8
MsG0380014706.01.T01 MTR_6g043480 53.191 47 22 0 148 194 107 153 1.24e-11 63.9
MsG0380014706.01.T01 MTR_8g072990 43.056 72 36 2 145 212 97 167 1.64e-11 63.5
MsG0380014706.01.T01 MTR_3g111920 41.667 72 42 0 43 114 3 74 1.67e-11 60.1
MsG0380014706.01.T01 MTR_6g043490 53.191 47 22 0 148 194 107 153 2.40e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014706.01.T01 AT5G58900 69.500 200 52 3 27 219 15 212 2.45e-96 287
MsG0380014706.01.T01 AT2G38090 62.332 223 57 4 5 217 5 210 3.77e-95 284
MsG0380014706.01.T01 AT5G05790 63.874 191 62 3 39 228 27 211 6.13e-79 242
MsG0380014706.01.T01 AT5G05790 63.874 191 62 3 39 228 27 211 6.13e-79 242
MsG0380014706.01.T01 AT3G11280 55.000 240 83 6 43 270 33 259 4.47e-78 239
MsG0380014706.01.T01 AT3G11280 55.000 240 83 6 43 270 33 259 4.47e-78 239
MsG0380014706.01.T01 AT5G01200 57.843 204 66 5 27 217 19 215 2.91e-73 227
MsG0380014706.01.T01 AT5G08520 51.075 186 90 1 37 221 6 191 6.71e-58 189
MsG0380014706.01.T01 AT1G49010 47.716 197 78 3 43 216 8 202 1.59e-51 173
MsG0380014706.01.T01 AT5G04760 49.162 179 79 3 40 218 3 169 8.51e-51 168
MsG0380014706.01.T01 AT5G23650 38.866 247 129 5 37 279 7 235 1.71e-42 150
MsG0380014706.01.T01 AT5G47390 59.140 93 38 0 128 220 76 168 9.56e-32 122
MsG0380014706.01.T01 AT3G10580 35.714 224 109 8 43 254 8 208 9.94e-31 117
MsG0380014706.01.T01 AT3G10580 35.714 224 109 8 43 254 8 208 1.39e-30 117
MsG0380014706.01.T01 AT4G09450 40.116 172 82 3 42 213 6 156 2.12e-29 112
MsG0380014706.01.T01 AT5G61620 54.206 107 45 1 118 224 82 184 7.74e-29 113
MsG0380014706.01.T01 AT5G56840 57.609 92 36 2 134 224 79 168 1.10e-27 108
MsG0380014706.01.T01 AT3G16350 60.784 102 30 2 128 229 125 216 2.03e-27 110
MsG0380014706.01.T01 AT1G70000 68.354 79 23 1 135 213 87 163 3.91e-27 107
MsG0380014706.01.T01 AT1G70000 68.354 79 23 1 135 213 87 163 3.91e-27 107
MsG0380014706.01.T01 AT1G74840 57.692 104 42 1 143 244 91 194 6.36e-26 103
MsG0380014706.01.T01 AT1G74840 57.692 104 42 1 143 244 91 194 1.03e-25 103
MsG0380014706.01.T01 AT1G19000 62.791 86 31 1 144 228 98 183 2.66e-25 103
MsG0380014706.01.T01 AT1G19000 62.791 86 31 1 144 228 98 183 2.66e-25 103
MsG0380014706.01.T01 AT1G75250 54.667 75 34 0 33 107 2 76 4.09e-21 86.7
MsG0380014706.01.T01 AT1G75250 54.667 75 34 0 33 107 2 76 6.15e-21 87.0
MsG0380014706.01.T01 AT3G10590 37.017 181 98 7 40 213 4 175 6.52e-20 86.7
MsG0380014706.01.T01 AT2G21650 52.174 69 33 0 43 111 14 82 2.07e-17 77.0
MsG0380014706.01.T01 AT4G39250 46.377 69 37 0 43 111 14 82 7.26e-16 72.8
MsG0380014706.01.T01 AT1G19510 55.738 61 27 0 47 107 16 76 1.17e-15 72.0
MsG0380014706.01.T01 AT2G18328 51.613 62 30 0 47 108 15 76 3.23e-12 62.0
MsG0380014706.01.T01 AT4G36570 61.364 44 17 0 43 86 12 55 8.25e-11 57.4

Find 104 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCATGAGTCTTCTTATTT+TGG 0.078101 3:+58731475 MsG0380014706.01.T01:CDS
AATGAACTTGAAAACAAATT+TGG 0.104091 3:-58729163 None:intergenic
TTTCACCTTTCATAGGTTTA+AGG 0.140387 3:-58731781 None:intergenic
ATTCAAGACTATTACCTTAT+TGG 0.153260 3:-58729747 None:intergenic
TATTGAGTTATTTATTATTA+TGG 0.169866 3:+58731581 MsG0380014706.01.T01:three_prime_UTR
TTAGTTAGTTATTGCCTTCT+TGG 0.174768 3:+58731706 MsG0380014706.01.T01:three_prime_UTR
GATGTTAACTGTTAACTTTA+TGG 0.182182 3:+58731885 MsG0380014706.01.T01:three_prime_UTR
TCTTTCTGCTATTTCCAAAT+TGG 0.206893 3:+58729477 MsG0380014706.01.T01:five_prime_UTR
AGGAAAATGAGTGCTTTAAT+TGG 0.207163 3:-58729234 None:intergenic
ATTTGACAGGTTATTTCTAT+TGG 0.210653 3:+58731051 MsG0380014706.01.T01:intron
TTGAATGTGAAAACCCAATT+TGG 0.228567 3:-58729491 None:intergenic
TCTTGCACAAGTTGGTTTCT+AGG 0.236929 3:+58729710 MsG0380014706.01.T01:five_prime_UTR
GGAGTTAATAATAACTCTTA+TGG 0.241432 3:+58731415 MsG0380014706.01.T01:CDS
TTGGCCAACATCAAGGAAAA+AGG 0.249298 3:+58729303 MsG0380014706.01.T01:five_prime_UTR
GGTTTCTAGGGTTATCTTAT+TGG 0.255506 3:+58729723 MsG0380014706.01.T01:five_prime_UTR
TATTTCATCAGACAACTTTC+AGG 0.257079 3:+58731169 MsG0380014706.01.T01:CDS
CTTGAATATCAATATCAATT+TGG 0.270388 3:+58729763 MsG0380014706.01.T01:five_prime_UTR
GGAAAATCAATTAGAAATAA+AGG 0.272315 3:-58729544 None:intergenic
TTAGATTGGGTGAATTCTTC+TGG 0.292652 3:+58730432 MsG0380014706.01.T01:CDS
AAACCAATTGTTGGTATAGT+TGG 0.296807 3:-58730154 None:intergenic
TTCACCCAATCTAAGGTAAA+AGG 0.308169 3:-58730423 None:intergenic
CTTTCTGCTATTTCCAAATT+GGG 0.309736 3:+58729478 MsG0380014706.01.T01:five_prime_UTR
GCTGGTTTGGTTCCAATTCC+TGG 0.315843 3:+58730378 MsG0380014706.01.T01:CDS
GGTGCATGAGGGTGAGAATT+TGG 0.327156 3:-58730117 None:intergenic
TTGCAGCTTTCACCTTTCAT+AGG 0.331595 3:-58731788 None:intergenic
CCTTTCTTCCTTTCCTGATC+AGG 0.333627 3:-58730507 None:intergenic
GTGCTTTAATTGGAAAAGAT+TGG 0.339169 3:-58729224 None:intergenic
TTTGACAGGTTATTTCTATT+GGG 0.339731 3:+58731052 MsG0380014706.01.T01:intron
AGTGGAAAGAGAGGCTCTTC+TGG 0.344816 3:+58730477 MsG0380014706.01.T01:CDS
CTCTTGGTTTCTTCTGAAGT+TGG 0.347825 3:-58731265 None:intergenic
GTTATCTTATTGGACCAATA+AGG 0.353998 3:+58729733 MsG0380014706.01.T01:five_prime_UTR
ATCTTACTTGTGTTCTTCTT+CGG 0.354438 3:-58730541 None:intergenic
CAACTTATGCATAGCCTAAA+CGG 0.360566 3:-58729566 None:intergenic
GCATTAACAGGAGCACAAAA+TGG 0.365638 3:+58730196 MsG0380014706.01.T01:CDS
TGTGGTAAATTCTCCACCTT+TGG 0.367052 3:+58729940 MsG0380014706.01.T01:five_prime_UTR
AGAAGAATTCACCCAATCTA+AGG 0.374549 3:-58730430 None:intergenic
ATGAACTTGAAAACAAATTT+GGG 0.376149 3:-58729162 None:intergenic
ACATCAACAACACTCTTTCC+AGG 0.376605 3:-58730309 None:intergenic
TACTTGTTCATAATCATGTT+TGG 0.382661 3:-58731298 None:intergenic
TGCTCTTGCAGTTTATGATA+AGG 0.387222 3:+58730248 MsG0380014706.01.T01:CDS
ATTCCAACTATACCAACAAT+TGG 0.389716 3:+58730151 MsG0380014706.01.T01:CDS
ATTGTAGCAATAGCATTAAC+AGG 0.398247 3:+58730184 MsG0380014706.01.T01:CDS
GATGAATCAGTATAAGGAAT+TGG 0.401455 3:+58730332 MsG0380014706.01.T01:CDS
GTAGTACTATAACCAGGAAT+TGG 0.407318 3:-58730390 None:intergenic
GTTGTTGAGAAGATTGCATT+TGG 0.408588 3:-58731522 None:intergenic
CAATATATTTACATAGAACT+TGG 0.415544 3:-58731667 None:intergenic
GTTTGGTGAAGTTGATCTCT+TGG 0.418126 3:-58731281 None:intergenic
TGAATGTGGTGAGCTGTGAT+TGG 0.426232 3:-58729101 None:intergenic
CTTGCACAAGTTGGTTTCTA+GGG 0.426235 3:+58729711 MsG0380014706.01.T01:five_prime_UTR
TCAAACAATTTGTTCTCTGC+AGG 0.426400 3:-58730222 None:intergenic
TGCATGATGTTGTTGATGAT+TGG 0.427511 3:+58731555 MsG0380014706.01.T01:exon
GTGAATTCTTCTGGTTATGA+TGG 0.427738 3:+58730441 MsG0380014706.01.T01:CDS
TTGTGTTCTTCTTCGGTCCA+TGG 0.429989 3:-58730534 None:intergenic
GATGTTTGTAATATAGAAGC+TGG 0.431912 3:+58730360 MsG0380014706.01.T01:CDS
GATTGGGTTCTATGTGTTTG+TGG 0.432531 3:-58729084 None:intergenic
AAAAGTATGGAAAAGGTGAT+TGG 0.434556 3:+58731080 MsG0380014706.01.T01:CDS
TCTGTAACTTCTGATATTGA+AGG 0.437794 3:+58731822 MsG0380014706.01.T01:three_prime_UTR
GAAAATCAATTAGAAATAAA+GGG 0.438068 3:-58729543 None:intergenic
TTGTAATATAGAAGCTGGTT+TGG 0.450084 3:+58730365 MsG0380014706.01.T01:CDS
TTTATAGATCTTGCACAAGT+TGG 0.451750 3:+58729702 MsG0380014706.01.T01:five_prime_UTR
GAGTTATTATTAACTCCATA+AGG 0.453193 3:-58731409 None:intergenic
TGATGTGATGAATCAGTATA+AGG 0.454237 3:+58730326 MsG0380014706.01.T01:CDS
AACTTATGCATAGCCTAAAC+GGG 0.468413 3:-58729565 None:intergenic
GATGTTGGCCAACAAAGAAA+AGG 0.470576 3:-58729292 None:intergenic
TTCTTTGTTGGCCAACATCA+AGG 0.471696 3:+58729296 MsG0380014706.01.T01:five_prime_UTR
GAAAGACACTGAATTTATGA+AGG 0.477154 3:-58729460 None:intergenic
TTCTGGTAGATCTCCTGATC+AGG 0.477520 3:+58730494 MsG0380014706.01.T01:CDS
CAAGGAACTTTGTGATCACT+AGG 0.491493 3:+58731113 MsG0380014706.01.T01:CDS
GAATGTGGTGAGCTGTGATT+GGG 0.519353 3:-58729100 None:intergenic
TATGAACTTGATGATAGCAT+TGG 0.526347 3:+58731731 MsG0380014706.01.T01:three_prime_UTR
TCTTATGGATTTAAAATGCA+AGG 0.530791 3:+58731430 MsG0380014706.01.T01:CDS
ATTTATCTTTCATATTGTTG+TGG 0.535933 3:+58729922 MsG0380014706.01.T01:five_prime_UTR
GCTACCTTATGCCACCGATC+CGG 0.536074 3:-58730276 None:intergenic
ATGTTGGCCAACAAAGAAAA+GGG 0.536893 3:-58729291 None:intergenic
AGAGGATTTAGTGGAAAGAG+AGG 0.538143 3:+58730468 MsG0380014706.01.T01:CDS
CCTGATCAGGAAAGGAAGAA+AGG 0.540469 3:+58730507 MsG0380014706.01.T01:CDS
TTGAATGCTGTCATAGTAGC+TGG 0.544765 3:-58731358 None:intergenic
ATGAAAACTTGTTCATGTGA+AGG 0.546854 3:-58731382 None:intergenic
AAGGTAGCTGCAATGATCCC+TGG 0.550717 3:+58730291 MsG0380014706.01.T01:CDS
GCATGGCTAGCTACTTGTGT+TGG 0.551417 3:-58731139 None:intergenic
AACAACCTTAAACCTATGAA+AGG 0.563921 3:+58731776 MsG0380014706.01.T01:three_prime_UTR
TACGCCGGATCGGTGGCATA+AGG 0.566659 3:+58730272 MsG0380014706.01.T01:CDS
ATCAAGTTCATATACCAAGA+AGG 0.569120 3:-58731720 None:intergenic
CTCAGAAGTGGTGTTAGCAG+TGG 0.576504 3:-58731323 None:intergenic
TGATGAAATATTTCTGAGCA+TGG 0.587728 3:-58731156 None:intergenic
ATGATAAGGATACGCCGGAT+CGG 0.588112 3:+58730262 MsG0380014706.01.T01:CDS
CTGAAAATGCATCTCAGAAG+TGG 0.589832 3:-58731335 None:intergenic
AAATAAGAAGACTCATGAAG+AGG 0.592849 3:-58731472 None:intergenic
AAAGACACTGAATTTATGAA+GGG 0.594445 3:-58729459 None:intergenic
CATCAACAACACTCTTTCCA+GGG 0.594776 3:-58730308 None:intergenic
TATATGATATTTCAAAACAG+AGG 0.595770 3:-58729983 None:intergenic
AACTTGATGATAGCATTGGA+AGG 0.596746 3:+58731735 MsG0380014706.01.T01:three_prime_UTR
GTGATTGGAGAAACATATCA+AGG 0.596845 3:+58731095 MsG0380014706.01.T01:CDS
GTAGATCTCCTGATCAGGAA+AGG 0.600023 3:+58730499 MsG0380014706.01.T01:CDS
TTCATCAGACAACTTTCAGG+AGG 0.604647 3:+58731172 MsG0380014706.01.T01:CDS
AAAGGAAGAAAGGTGTGCCA+TGG 0.605391 3:+58730517 MsG0380014706.01.T01:CDS
ATAAGGATACGCCGGATCGG+TGG 0.605758 3:+58730265 MsG0380014706.01.T01:CDS
AGATAAATGAAGAGAACCAA+AGG 0.617158 3:-58729956 None:intergenic
TGGACCTCAGACACAAAACA+TGG 0.622490 3:+58731495 MsG0380014706.01.T01:CDS
TATGAAAGGTGAAAGCTGCA+AGG 0.634603 3:+58731790 MsG0380014706.01.T01:three_prime_UTR
TAAATGAAGAGAACCAAAGG+TGG 0.648472 3:-58729953 None:intergenic
AGTTTATGATAAGGATACGC+CGG 0.649185 3:+58730257 MsG0380014706.01.T01:CDS
GCAGCAGTAGTACTATAACC+AGG 0.674867 3:-58730396 None:intergenic
TTTGAACAAATGGTGCATGA+GGG 0.682304 3:-58730128 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGAGTTATTTATTATTA+TGG + Chr3:58731581-58731600 MsG0380014706.01.T01:three_prime_UTR 10.0%
!!! ATTTATTTAAGTATTTTTGA+GGG + Chr3:58730966-58730985 MsG0380014706.01.T01:intron 10.0%
!!! TATTTATTTAAGTATTTTTG+AGG + Chr3:58730965-58730984 MsG0380014706.01.T01:intron 10.0%
!!! TTTTTTTTTAGTATATAAGA+AGG + Chr3:58729662-58729681 MsG0380014706.01.T01:five_prime_UTR 10.0%
!! GAAAATCAATTAGAAATAAA+GGG - Chr3:58729546-58729565 None:intergenic 15.0%
!!! AAAAATAAAAGCTTTGTTTA+AGG - Chr3:58729419-58729438 None:intergenic 15.0%
!!! ATATTTATTTAAGTTGTTGA+AGG + Chr3:58730993-58731012 MsG0380014706.01.T01:intron 15.0%
!!! TATTTATTTAAGTTGTTGAA+GGG + Chr3:58730994-58731013 MsG0380014706.01.T01:intron 15.0%
!!! TTTAGTTAAATTTTTCAACT+TGG + Chr3:58730058-58730077 MsG0380014706.01.T01:five_prime_UTR 15.0%
!! AAATAAAGGGAAAAAACAAA+AGG - Chr3:58729533-58729552 None:intergenic 20.0%
!! AATAAAGGGAAAAAACAAAA+GGG - Chr3:58729532-58729551 None:intergenic 20.0%
!! AATGAACTTGAAAACAAATT+TGG - Chr3:58729166-58729185 None:intergenic 20.0%
!! ATGAACTTGAAAACAAATTT+GGG - Chr3:58729165-58729184 None:intergenic 20.0%
!! ATGTTAACTGTTAACTTTAT+AGG + Chr3:58731886-58731905 MsG0380014706.01.T01:three_prime_UTR 20.0%
!! ATTTATCTTTCATATTGTTG+TGG + Chr3:58729922-58729941 MsG0380014706.01.T01:five_prime_UTR 20.0%
!! CAATATATTTACATAGAACT+TGG - Chr3:58731670-58731689 None:intergenic 20.0%
!! CATAAACTTTAAATTACATC+CGG - Chr3:58730826-58730845 None:intergenic 20.0%
!! CTTGAATATCAATATCAATT+TGG + Chr3:58729763-58729782 MsG0380014706.01.T01:five_prime_UTR 20.0%
!! GATTATGAAAATAATTTGAC+AGG + Chr3:58731038-58731057 MsG0380014706.01.T01:intron 20.0%
!! GGAAAATCAATTAGAAATAA+AGG - Chr3:58729547-58729566 None:intergenic 20.0%
!! TATATGATATTTCAAAACAG+AGG - Chr3:58729986-58730005 None:intergenic 20.0%
!!! CAATAAGCATTTTTTTCAAA+AGG - Chr3:58729896-58729915 None:intergenic 20.0%
! AAAGACACTGAATTTATGAA+GGG - Chr3:58729462-58729481 None:intergenic 25.0%
! AACTAATATTAGTGCATGTT+TGG + Chr3:58730674-58730693 MsG0380014706.01.T01:intron 25.0%
! AAGAAAAGGGAAAGAAAAAT+TGG - Chr3:58729281-58729300 None:intergenic 25.0%
! ACAAAAACAAGACACAAAAA+AGG - Chr3:58729257-58729276 None:intergenic 25.0%
! AGAAAAGGGAAAGAAAAATT+GGG - Chr3:58729280-58729299 None:intergenic 25.0%
! ATCTGTAGTTATTAAGAGTT+AGG + Chr3:58730882-58730901 MsG0380014706.01.T01:intron 25.0%
! ATTCAAGACTATTACCTTAT+TGG - Chr3:58729750-58729769 None:intergenic 25.0%
! CTTAACTAATAACTACCAAT+AGG - Chr3:58730913-58730932 None:intergenic 25.0%
! GAGTTATTATTAACTCCATA+AGG - Chr3:58731412-58731431 None:intergenic 25.0%
! GGAAAAGATTGGAAAAAAAA+TGG - Chr3:58729216-58729235 None:intergenic 25.0%
! GGAGTTAATAATAACTCTTA+TGG + Chr3:58731415-58731434 MsG0380014706.01.T01:CDS 25.0%
! TAAAGTTTATGTATGAACCT+AGG + Chr3:58730835-58730854 MsG0380014706.01.T01:intron 25.0%
! TACTTGTTCATAATCATGTT+TGG - Chr3:58731301-58731320 None:intergenic 25.0%
!! TAGAACAAGTATCTTTTGTT+TGG + Chr3:58731605-58731624 MsG0380014706.01.T01:three_prime_UTR 25.0%
!! TAGTTGGAATTTTGAACAAA+TGG - Chr3:58730141-58730160 None:intergenic 25.0%
!! TATGTGAAGATTTTACTGTT+TGG + Chr3:58730624-58730643 MsG0380014706.01.T01:intron 25.0%
!! TCTTATGGATTTAAAATGCA+AGG + Chr3:58731430-58731449 MsG0380014706.01.T01:CDS 25.0%
!! TGACAAAAGCTACATTTTAA+AGG - Chr3:58730736-58730755 None:intergenic 25.0%
!!! ATTTGACAGGTTATTTCTAT+TGG + Chr3:58731051-58731070 MsG0380014706.01.T01:intron 25.0%
!!! TTTGACAGGTTATTTCTATT+GGG + Chr3:58731052-58731071 MsG0380014706.01.T01:intron 25.0%
AAACCAATTGTTGGTATAGT+TGG - Chr3:58730157-58730176 None:intergenic 30.0%
AAATAAGAAGACTCATGAAG+AGG - Chr3:58731475-58731494 None:intergenic 30.0%
AACAACCTTAAACCTATGAA+AGG + Chr3:58731776-58731795 MsG0380014706.01.T01:three_prime_UTR 30.0%
AAGAGTTAGGTATTTCCTAT+TGG + Chr3:58730895-58730914 MsG0380014706.01.T01:intron 30.0%
ACTATAGAACAAAAAAGCTG+TGG - Chr3:58729128-58729147 None:intergenic 30.0%
AGATAAATGAAGAGAACCAA+AGG - Chr3:58729959-58729978 None:intergenic 30.0%
AGGAAAATGAGTGCTTTAAT+TGG - Chr3:58729237-58729256 None:intergenic 30.0%
ATCAAGTTCATATACCAAGA+AGG - Chr3:58731723-58731742 None:intergenic 30.0%
ATCTTACTTGTGTTCTTCTT+CGG - Chr3:58730544-58730563 None:intergenic 30.0%
ATCTTCCAAAAACCAATTGT+TGG - Chr3:58730166-58730185 None:intergenic 30.0%
ATTCCAACTATACCAACAAT+TGG + Chr3:58730151-58730170 MsG0380014706.01.T01:CDS 30.0%
ATTGTAGCAATAGCATTAAC+AGG + Chr3:58730184-58730203 MsG0380014706.01.T01:CDS 30.0%
GAAAGACACTGAATTTATGA+AGG - Chr3:58729463-58729482 None:intergenic 30.0%
GATGAATCAGTATAAGGAAT+TGG + Chr3:58730332-58730351 MsG0380014706.01.T01:CDS 30.0%
GATGTTTGTAATATAGAAGC+TGG + Chr3:58730360-58730379 MsG0380014706.01.T01:CDS 30.0%
GTGCTTTAATTGGAAAAGAT+TGG - Chr3:58729227-58729246 None:intergenic 30.0%
GTTATCTTATTGGACCAATA+AGG + Chr3:58729733-58729752 MsG0380014706.01.T01:five_prime_UTR 30.0%
GTTTGGATTGACAGTTAATT+TGG - Chr3:58730793-58730812 None:intergenic 30.0%
TATTTCATCAGACAACTTTC+AGG + Chr3:58731169-58731188 MsG0380014706.01.T01:CDS 30.0%
TCTGTAACTTCTGATATTGA+AGG + Chr3:58731822-58731841 MsG0380014706.01.T01:three_prime_UTR 30.0%
TGATGTGATGAATCAGTATA+AGG + Chr3:58730326-58730345 MsG0380014706.01.T01:CDS 30.0%
TTAGTTAGTTATTGCCTTCT+TGG + Chr3:58731706-58731725 MsG0380014706.01.T01:three_prime_UTR 30.0%
TTGAATGTGAAAACCCAATT+TGG - Chr3:58729494-58729513 None:intergenic 30.0%
TTGTAATATAGAAGCTGGTT+TGG + Chr3:58730365-58730384 MsG0380014706.01.T01:CDS 30.0%
TTTATAGATCTTGCACAAGT+TGG + Chr3:58729702-58729721 MsG0380014706.01.T01:five_prime_UTR 30.0%
TTTCACCTTTCATAGGTTTA+AGG - Chr3:58731784-58731803 None:intergenic 30.0%
! AAAAGTATGGAAAAGGTGAT+TGG + Chr3:58731080-58731099 MsG0380014706.01.T01:CDS 30.0%
! ATGAAAACTTGTTCATGTGA+AGG - Chr3:58731385-58731404 None:intergenic 30.0%
! GGAAAAAACAAAAGGGTATA+AGG - Chr3:58729525-58729544 None:intergenic 30.0%
! TATGAACTTGATGATAGCAT+TGG + Chr3:58731731-58731750 MsG0380014706.01.T01:three_prime_UTR 30.0%
! TGATGAAATATTTCTGAGCA+TGG - Chr3:58731159-58731178 None:intergenic 30.0%
! TTCACCTTTTACCTTAGATT+GGG + Chr3:58730419-58730438 MsG0380014706.01.T01:CDS 30.0%
! TTTCTTTCCCTTTTCTTTGT+TGG + Chr3:58729284-58729303 MsG0380014706.01.T01:five_prime_UTR 30.0%
! TTTTGTCAAAATCACGATGA+CGG + Chr3:58730748-58730767 MsG0380014706.01.T01:intron 30.0%
!! CTTCATGAGTCTTCTTATTT+TGG + Chr3:58731475-58731494 MsG0380014706.01.T01:CDS 30.0%
!! CTTTCTGCTATTTCCAAATT+GGG + Chr3:58729478-58729497 MsG0380014706.01.T01:five_prime_UTR 30.0%
!! TCTAATTGATTTTCCCGTTT+AGG + Chr3:58729552-58729571 MsG0380014706.01.T01:five_prime_UTR 30.0%
!! TCTTTCTGCTATTTCCAAAT+TGG + Chr3:58729477-58729496 MsG0380014706.01.T01:five_prime_UTR 30.0%
!!! CTATACCAACAATTGGTTTT+TGG + Chr3:58730158-58730177 MsG0380014706.01.T01:CDS 30.0%
!!! TTGGTTTTTTGTGATGAAGT+GGG + Chr3:58730077-58730096 MsG0380014706.01.T01:exon 30.0%
AAAAAAGCTGTGGATGAATG+TGG - Chr3:58729118-58729137 None:intergenic 35.0%
AACTTATGCATAGCCTAAAC+GGG - Chr3:58729568-58729587 None:intergenic 35.0%
ACTTTAAATTACATCCGGTC+AGG - Chr3:58730821-58730840 None:intergenic 35.0%
AGAAGAATTCACCCAATCTA+AGG - Chr3:58730433-58730452 None:intergenic 35.0%
AGTTTATGATAAGGATACGC+CGG + Chr3:58730257-58730276 MsG0380014706.01.T01:CDS 35.0%
ATGTTGGCCAACAAAGAAAA+GGG - Chr3:58729294-58729313 None:intergenic 35.0%
CAACTTATGCATAGCCTAAA+CGG - Chr3:58729569-58729588 None:intergenic 35.0%
CTATTGGGTCTGAAAAAGTA+TGG + Chr3:58731067-58731086 MsG0380014706.01.T01:CDS 35.0%
GTAGTACTATAACCAGGAAT+TGG - Chr3:58730393-58730412 None:intergenic 35.0%
GTGATTGGAGAAACATATCA+AGG + Chr3:58731095-58731114 MsG0380014706.01.T01:CDS 35.0%
GTTGTTGAGAAGATTGCATT+TGG - Chr3:58731525-58731544 None:intergenic 35.0%
TAAATGAAGAGAACCAAAGG+TGG - Chr3:58729956-58729975 None:intergenic 35.0%
TGCTCTTGCAGTTTATGATA+AGG + Chr3:58730248-58730267 MsG0380014706.01.T01:CDS 35.0%
TTAGATTGGGTGAATTCTTC+TGG + Chr3:58730432-58730451 MsG0380014706.01.T01:CDS 35.0%
TTATGTATGAACCTAGGAGT+TGG + Chr3:58730841-58730860 MsG0380014706.01.T01:intron 35.0%
TTTGAACAAATGGTGCATGA+GGG - Chr3:58730131-58730150 None:intergenic 35.0%
! AAAACCATGTTTTGTGTCTG+AGG - Chr3:58731502-58731521 None:intergenic 35.0%
! AACTTGATGATAGCATTGGA+AGG + Chr3:58731735-58731754 MsG0380014706.01.T01:three_prime_UTR 35.0%
! ATTCCCTTTTTCCTTGATGT+TGG - Chr3:58729310-58729329 None:intergenic 35.0%
! CAAGTTTTCATGTCTCCTTA+TGG + Chr3:58731394-58731413 MsG0380014706.01.T01:CDS 35.0%
! CTTCACCTTTTACCTTAGAT+TGG + Chr3:58730418-58730437 MsG0380014706.01.T01:CDS 35.0%
! GGTCTGAAAAAGTATGGAAA+AGG + Chr3:58731073-58731092 MsG0380014706.01.T01:CDS 35.0%
! GTGAATTCTTCTGGTTATGA+TGG + Chr3:58730441-58730460 MsG0380014706.01.T01:CDS 35.0%
! TCAAACAATTTGTTCTCTGC+AGG - Chr3:58730225-58730244 None:intergenic 35.0%
! TTCACCCAATCTAAGGTAAA+AGG - Chr3:58730426-58730445 None:intergenic 35.0%
! TTTTGAACAAATGGTGCATG+AGG - Chr3:58730132-58730151 None:intergenic 35.0%
! TTTTGTGATGAAGTGGGAAA+TGG + Chr3:58730083-58730102 MsG0380014706.01.T01:exon 35.0%
!! GGTTTCTAGGGTTATCTTAT+TGG + Chr3:58729723-58729742 MsG0380014706.01.T01:five_prime_UTR 35.0%
!! TGCATGATGTTGTTGATGAT+TGG + Chr3:58731555-58731574 MsG0380014706.01.T01:exon 35.0%
!!! CTTGGTTTTTTGTGATGAAG+TGG + Chr3:58730076-58730095 MsG0380014706.01.T01:exon 35.0%
!!! GATGGTTTTAGAGGATTTAG+TGG + Chr3:58730459-58730478 MsG0380014706.01.T01:CDS 35.0%
!!! TCTGGTTATGATGGTTTTAG+AGG + Chr3:58730450-58730469 MsG0380014706.01.T01:CDS 35.0%
ACATCAACAACACTCTTTCC+AGG - Chr3:58730312-58730331 None:intergenic 40.0%
AGAGGATTTAGTGGAAAGAG+AGG + Chr3:58730468-58730487 MsG0380014706.01.T01:CDS 40.0%
ATTTCACTTCACCAACTCCT+AGG - Chr3:58730855-58730874 None:intergenic 40.0%
CAAGGAACTTTGTGATCACT+AGG + Chr3:58731113-58731132 MsG0380014706.01.T01:CDS 40.0%
CATCAACAACACTCTTTCCA+GGG - Chr3:58730311-58730330 None:intergenic 40.0%
CTGAAAATGCATCTCAGAAG+TGG - Chr3:58731338-58731357 None:intergenic 40.0%
GATGTTGGCCAACAAAGAAA+AGG - Chr3:58729295-58729314 None:intergenic 40.0%
GATTGGGTTCTATGTGTTTG+TGG - Chr3:58729087-58729106 None:intergenic 40.0%
TATGAAAGGTGAAAGCTGCA+AGG + Chr3:58731790-58731809 MsG0380014706.01.T01:three_prime_UTR 40.0%
TGGCCAACATCAAGGAAAAA+GGG + Chr3:58729304-58729323 MsG0380014706.01.T01:five_prime_UTR 40.0%
TGTGGTAAATTCTCCACCTT+TGG + Chr3:58729940-58729959 MsG0380014706.01.T01:five_prime_UTR 40.0%
TTCATCAGACAACTTTCAGG+AGG + Chr3:58731172-58731191 MsG0380014706.01.T01:CDS 40.0%
TTCTTTGTTGGCCAACATCA+AGG + Chr3:58729296-58729315 MsG0380014706.01.T01:five_prime_UTR 40.0%
TTGAATGCTGTCATAGTAGC+TGG - Chr3:58731361-58731380 None:intergenic 40.0%
TTGCAGCTTTCACCTTTCAT+AGG - Chr3:58731791-58731810 None:intergenic 40.0%
TTGGCCAACATCAAGGAAAA+AGG + Chr3:58729303-58729322 MsG0380014706.01.T01:five_prime_UTR 40.0%
! GCATTAACAGGAGCACAAAA+TGG + Chr3:58730196-58730215 MsG0380014706.01.T01:CDS 40.0%
! GTTTGGTGAAGTTGATCTCT+TGG - Chr3:58731284-58731303 None:intergenic 40.0%
!! CTCTTGGTTTCTTCTGAAGT+TGG - Chr3:58731268-58731287 None:intergenic 40.0%
!! CTTGCACAAGTTGGTTTCTA+GGG + Chr3:58729711-58729730 MsG0380014706.01.T01:five_prime_UTR 40.0%
!! TCTTGCACAAGTTGGTTTCT+AGG + Chr3:58729710-58729729 MsG0380014706.01.T01:five_prime_UTR 40.0%
AATCCAAACATGCACCTGAC+CGG + Chr3:58730804-58730823 MsG0380014706.01.T01:intron 45.0%
ATGATAAGGATACGCCGGAT+CGG + Chr3:58730262-58730281 MsG0380014706.01.T01:CDS 45.0%
CCTGATCAGGAAAGGAAGAA+AGG + Chr3:58730507-58730526 MsG0380014706.01.T01:CDS 45.0%
CCTTTCTTCCTTTCCTGATC+AGG - Chr3:58730510-58730529 None:intergenic 45.0%
GAATGTGGTGAGCTGTGATT+GGG - Chr3:58729103-58729122 None:intergenic 45.0%
GCAGCAGTAGTACTATAACC+AGG - Chr3:58730399-58730418 None:intergenic 45.0%
GTAGATCTCCTGATCAGGAA+AGG + Chr3:58730499-58730518 MsG0380014706.01.T01:CDS 45.0%
TGAATGTGGTGAGCTGTGAT+TGG - Chr3:58729104-58729123 None:intergenic 45.0%
TGGACCTCAGACACAAAACA+TGG + Chr3:58731495-58731514 MsG0380014706.01.T01:CDS 45.0%
TTCTGGTAGATCTCCTGATC+AGG + Chr3:58730494-58730513 MsG0380014706.01.T01:CDS 45.0%
TTGTGTTCTTCTTCGGTCCA+TGG - Chr3:58730537-58730556 None:intergenic 45.0%
! AAAGGAAGAAAGGTGTGCCA+TGG + Chr3:58730517-58730536 MsG0380014706.01.T01:CDS 45.0%
AAGGTAGCTGCAATGATCCC+TGG + Chr3:58730291-58730310 MsG0380014706.01.T01:CDS 50.0%
AGTGGAAAGAGAGGCTCTTC+TGG + Chr3:58730477-58730496 MsG0380014706.01.T01:CDS 50.0%
GGTGCATGAGGGTGAGAATT+TGG - Chr3:58730120-58730139 None:intergenic 50.0%
! CTCAGAAGTGGTGTTAGCAG+TGG - Chr3:58731326-58731345 None:intergenic 50.0%
! GCATGGCTAGCTACTTGTGT+TGG - Chr3:58731142-58731161 None:intergenic 50.0%
!! GCTGGTTTGGTTCCAATTCC+TGG + Chr3:58730378-58730397 MsG0380014706.01.T01:CDS 50.0%
ATAAGGATACGCCGGATCGG+TGG + Chr3:58730265-58730284 MsG0380014706.01.T01:CDS 55.0%
CATCCGGTCAGGTGCATGTT+TGG - Chr3:58730810-58730829 None:intergenic 55.0%
GCTACCTTATGCCACCGATC+CGG - Chr3:58730279-58730298 None:intergenic 55.0%
TACGCCGGATCGGTGGCATA+AGG + Chr3:58730272-58730291 MsG0380014706.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 58729079 58731905 58729079 ID=MsG0380014706.01;Name=MsG0380014706.01
Chr3 mRNA 58729079 58731905 58729079 ID=MsG0380014706.01.T01;Parent=MsG0380014706.01;Name=MsG0380014706.01.T01;_AED=0.10;_eAED=0.10;_QI=1011|1|1|1|1|1|2|344|322
Chr3 exon 58729079 58730556 58729079 ID=MsG0380014706.01.T01:exon:18940;Parent=MsG0380014706.01.T01
Chr3 exon 58731060 58731905 58731060 ID=MsG0380014706.01.T01:exon:18941;Parent=MsG0380014706.01.T01
Chr3 five_prime_UTR 58729079 58730089 58729079 ID=MsG0380014706.01.T01:five_prime_utr;Parent=MsG0380014706.01.T01
Chr3 CDS 58730090 58730556 58730090 ID=MsG0380014706.01.T01:cds;Parent=MsG0380014706.01.T01
Chr3 CDS 58731060 58731561 58731060 ID=MsG0380014706.01.T01:cds;Parent=MsG0380014706.01.T01
Chr3 three_prime_UTR 58731562 58731905 58731562 ID=MsG0380014706.01.T01:three_prime_utr;Parent=MsG0380014706.01.T01
Gene Sequence

>MsG0380014706.01.T01

ATGAAGTGGGAAATGGAAATTCTTTCACCAAATTCTCACCCTCATGCACCATTTGTTCAAAATTCCAACTATACCAACAATTGGTTTTTGGAAGATTGTAGCAATAGCATTAACAGGAGCACAAAATGGACTCCTGCAGAGAACAAATTGTTTGAAAATGCTCTTGCAGTTTATGATAAGGATACGCCGGATCGGTGGCATAAGGTAGCTGCAATGATCCCTGGAAAGAGTGTTGTTGATGTGATGAATCAGTATAAGGAATTGGAAGTTGATGTTTGTAATATAGAAGCTGGTTTGGTTCCAATTCCTGGTTATAGTACTACTGCTGCTTCACCTTTTACCTTAGATTGGGTGAATTCTTCTGGTTATGATGGTTTTAGAGGATTTAGTGGAAAGAGAGGCTCTTCTGGTAGATCTCCTGATCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAAGAACACAAGTTATTTCTATTGGGTCTGAAAAAGTATGGAAAAGGTGATTGGAGAAACATATCAAGGAACTTTGTGATCACTAGGACACCAACACAAGTAGCTAGCCATGCTCAGAAATATTTCATCAGACAACTTTCAGGAGGCAAAGACAAAAGAAGAGCTAGCATTCATGACATAACAACAGTTAATCTCACAGAAGTTTCTAGAACTTCTCCAACTTCAGAAGAAACCAAGAGATCAACTTCACCAAACATGATTATGAACAAGTATTCCACTGCTAACACCACTTCTGAGATGCATTTTCAGCCAGCTACTATGACAGCATTCAATCCTTCACATGAACAAGTTTTCATGTCTCCTTATGGAGTTAATAATAACTCTTATGGATTTAAAATGCAAGGTCAAAATATGCATAGAAATCCTCTTCATGAGTCTTCTTATTTTGGACCTCAGACACAAAACATGGTTTTCCAAATGCAATCTTCTCAACAACACTATTCACATGCATGA

Protein sequence

>MsG0380014706.01.T01

MKWEMEILSPNSHPHAPFVQNSNYTNNWFLEDCSNSINRSTKWTPAENKLFENALAVYDKDTPDRWHKVAAMIPGKSVVDVMNQYKELEVDVCNIEAGLVPIPGYSTTAASPFTLDWVNSSGYDGFRGFSGKRGSSGRSPDQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTEVSRTSPTSEETKRSTSPNMIMNKYSTANTTSEMHFQPATMTAFNPSHEQVFMSPYGVNNNSYGFKMQGQNMHRNPLHESSYFGPQTQNMVFQMQSSQQHYSHA*