AlfalfaGEDB | MsG0180002977.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002977.01

KEGG: -
GO: GO:0003676 GO:0003723 GO:0046872
PFAM: PF00013 PF00642 PF14608

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002977.01.T01	XP_013467665.1	86.688	308	23	3	1	305	1	293	6.85E-175	495

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002977.01.T01	Q7F8R0	56.757	259	98	4	54	302	42	296	3.88E-88	268

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002977.01.T01	A0A072VIQ3	86.688	308	23	3	1	305	1	293	3.27e-175	495

TFs/TRs:

Gene ID	Type	Classification
MsG0180002977.01.T01	TF	C3H

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000240.01	MsG0180002977.01	0.851395	9.124397e-61	1.844417e-57
MsG0180002977.01	MsG0180006064.01	0.822046	2.920231e-53	2.416917e-50
MsG0180002977.01	MsG0280007224.01	0.807429	5.076788e-50	2.827046e-47
MsG0180002977.01	MsG0280008894.01	-0.806566	7.731564e-50	4.210206e-47
MsG0180002977.01	MsG0280010378.01	-0.804208	2.412485e-49	1.236507e-46
MsG0180002977.01	MsG0280010532.01	0.815221	1.032922e-51	7.078791e-49
MsG0180002977.01	MsG0280011059.01	0.849171	3.836825e-60	7.212680e-57
MsG0180002977.01	MsG0280011376.01	-0.810584	1.071901e-50	6.486554e-48
MsG0180002977.01	MsG0380015066.01	0.826919	2.082522e-54	1.980341e-51
MsG0180002977.01	MsG0380016191.01	0.846223	2.485990e-59	4.248766e-56
MsG0180002977.01	MsG0380016828.01	0.816521	5.298205e-52	3.762698e-49
MsG0180002977.01	MsG0380017178.01	0.870425	1.474130e-66	5.731476e-63
MsG0180002977.01	MsG0380017263.01	0.864751	9.707218e-65	3.081652e-61
MsG0180002977.01	MsG0380017265.01	0.834645	2.659495e-56	3.175536e-53
MsG0180002977.01	MsG0380017266.01	0.851570	8.140960e-61	1.654761e-57
MsG0180002977.01	MsG0380017941.01	-0.801867	7.351529e-49	3.549307e-46
MsG0180002977.01	MsG0480018331.01	-0.813825	2.103918e-51	1.388432e-48
MsG0180002977.01	MsG0480019689.01	0.820613	6.252940e-53	4.971302e-50
MsG0180002977.01	MsG0480019984.01	0.812382	4.359585e-51	2.767798e-48
MsG0180002977.01	MsG0480020327.01	0.810051	1.396715e-50	8.334366e-48
MsG0180002977.01	MsG0480020410.01	0.810180	1.310465e-50	7.845552e-48
MsG0180002977.01	MsG0480021896.01	0.817449	3.278365e-52	2.388301e-49
MsG0180002977.01	MsG0480022615.01	0.840650	7.653636e-58	1.097325e-54
MsG0180002977.01	MsG0480023936.01	0.884364	2.042242e-71	1.343486e-67
MsG0180002977.01	MsG0580024363.01	0.824735	6.870077e-54	6.138091e-51
MsG0180002977.01	MsG0580024928.01	0.834394	3.074423e-56	3.643713e-53
MsG0180002977.01	MsG0580027401.01	-0.821184	4.620740e-53	3.732975e-50
MsG0180002977.01	MsG0580029999.01	0.801549	8.545959e-49	4.092540e-46
MsG0180002977.01	MsG0680030356.01	0.827111	1.874146e-54	1.792018e-51
MsG0180002977.01	MsG0680031446.01	0.857380	1.697562e-62	4.181627e-59
MsG0180002977.01	MsG0680031805.01	0.830332	3.116816e-55	3.273829e-52
MsG0180002977.01	MsG0680032204.01	-0.801342	9.419081e-49	4.487420e-46
MsG0180002977.01	MsG0780038309.01	0.800824	1.202035e-48	5.652008e-46
MsG0180002977.01	MsG0780038910.01	0.802107	6.564435e-49	3.188485e-46
MsG0180002977.01	MsG0780039867.01	0.813323	2.712517e-51	1.765892e-48
MsG0180002977.01	MsG0780040148.01	0.816579	5.142231e-52	3.657751e-49
MsG0180002977.01	MsG0780040576.01	0.872212	3.783363e-67	1.569807e-63
MsG0180002977.01	MsG0780040596.01	-0.807523	4.849063e-50	2.706847e-47
MsG0180002977.01	MsG0880044389.01	0.820796	5.676964e-53	4.536645e-50
MsG0180002977.01	MsG0880044611.01	0.800957	1.129557e-48	5.329401e-46
MsG0180002977.01	MsG0880046289.01	0.806138	9.514112e-50	5.124700e-47
MsG0180002977.01	MsG0880046333.01	0.800409	1.461067e-48	6.798186e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002977.01.T01	MTR_1g053960	86.688	308	23	3	1	305	1	293	8.30e-179	495
MsG0180002977.01.T01	MTR_1g053960	96.035	227	6	1	82	305	1	227	1.16e-158	442
MsG0180002977.01.T01	MTR_7g093130	62.776	317	87	9	1	302	1	301	1.39e-117	340
MsG0180002977.01.T01	MTR_7g093130	70.513	234	53	7	82	302	1	231	2.65e-98	289
MsG0180002977.01.T01	MTR_1g116940	59.533	257	91	6	58	305	6	258	3.08e-98	290

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002977.01.T01	AT3G12130	44.937	316	94	9	1	305	1	247	3.54e-67	210
MsG0180002977.01.T01	AT5G06770	51.442	208	85	6	108	305	16	217	2.37e-57	184
MsG0180002977.01.T01	AT5G06770	51.691	207	86	6	108	305	38	239	4.03e-57	184
MsG0180002977.01.T01	AT5G06770	46.154	91	32	3	1	87	1	78	4.53e-14	70.9
MsG0180002977.01.T01	AT5G06770	51.741	201	81	7	115	305	18	212	4.23e-54	176
MsG0180002977.01.T01	AT5G06770	71.429	35	10	0	53	87	17	51	4.52e-12	64.7
MsG0180002977.01.T01	AT5G06770	51.741	201	81	7	115	305	18	212	4.23e-54	176
MsG0180002977.01.T01	AT5G06770	71.429	35	10	0	53	87	17	51	4.52e-12	64.7
MsG0180002977.01.T01	AT5G06770	51.741	201	81	7	115	305	18	212	4.23e-54	176
MsG0180002977.01.T01	AT5G06770	71.429	35	10	0	53	87	17	51	4.52e-12	64.7
MsG0180002977.01.T01	AT3G12130	63.291	158	50	4	154	305	20	175	8.09e-53	171
MsG0180002977.01.T01	AT5G06770	59.333	150	56	4	156	305	23	167	2.48e-50	164

Find 119 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTCCGTTCAATTCATTGTT+AGG	0.199435	1:+54153855	MsG0180002977.01.T01:five_prime_UTR
AGTTCAATGTTTCTAAGATT+TGG	0.218015	1:-54157312	None:intergenic
TCTGCTGAAGGCTGCAAATT+TGG	0.233846	1:+54157006	MsG0180002977.01.T01:CDS
GGAGCACCCGGGGTGGATTT+AGG	0.239916	1:-54157414	None:intergenic
TATCTCTTCTATCTAGGGTT+AGG	0.257191	1:+54153910	MsG0180002977.01.T01:five_prime_UTR
TTGGTCTTGATGTTTCTTCC+AGG	0.287578	1:-54157459	None:intergenic
ATGTTTCTTCCAGGTGCGGC+TGG	0.289209	1:-54157450	None:intergenic
CCCATTCACCATGGGCAAAA+TGG	0.307326	1:-54157038	None:intergenic
GTTCAATGTTTCTAAGATTT+GGG	0.309393	1:-54157311	None:intergenic
GATCAGTGTAGAAGCTTCTT+TGG	0.311263	1:+54157197	MsG0180002977.01.T01:CDS
TCATTGTTAGGGGTAGGGTT+AGG	0.327298	1:+54153867	MsG0180002977.01.T01:five_prime_UTR
TAAGATTTGGGTCAGATTCA+TGG	0.329032	1:-54157299	None:intergenic
ACTGATCTTGGCAGTGGAAT+TGG	0.339065	1:-54157181	None:intergenic
GCTCTCTATCTCTTCTATCT+AGG	0.344285	1:+54153904	MsG0180002977.01.T01:five_prime_UTR
GCTAAAGGATCCTGCACATT+TGG	0.348312	1:+54157498	MsG0180002977.01.T01:CDS
CACTTCTCACATCATGTTCC+CGG	0.349238	1:+54156856	MsG0180002977.01.T01:CDS
CTCCGTTCAATTCATTGTTA+GGG	0.350725	1:+54153856	MsG0180002977.01.T01:five_prime_UTR
ATCAACCCTCCCTCGTTTGC+GGG	0.354317	1:-54153998	None:intergenic
GGTCGAGTTGAGGCTCCTTC+TGG	0.361759	1:+54157135	MsG0180002977.01.T01:CDS
CATTGTTAGGGGTAGGGTTA+GGG	0.369802	1:+54153868	MsG0180002977.01.T01:five_prime_UTR
TTGAAAATTTGACTCCTGTT+TGG	0.371380	1:-54157269	None:intergenic
AGGGTTGATGCTGCTGTTAA+TGG	0.373294	1:+54154012	MsG0180002977.01.T01:CDS
TCTTTGGCTGGAGCTATCAT+TGG	0.389153	1:+54157213	MsG0180002977.01.T01:CDS
ATCTCTTCTATCTAGGGTTA+GGG	0.390884	1:+54153911	MsG0180002977.01.T01:five_prime_UTR
GTTGAGGCTCCTTCTGGTCT+AGG	0.393390	1:+54157141	MsG0180002977.01.T01:CDS
AGCATTGCTGGCTGTCCATT+TGG	0.402746	1:+54156823	MsG0180002977.01.T01:CDS
TCCACCCCGGGTGCTCCTGC+TGG	0.410973	1:+54157420	MsG0180002977.01.T01:CDS
GAACGGAGGAAGATGGGGTT+TGG	0.413087	1:-54153841	None:intergenic
GCACCCGGGGTGGATTTAGG+TGG	0.419235	1:-54157411	None:intergenic
GGTGGGGCGGCAACATTTCT+AGG	0.421558	1:-54156928	None:intergenic
GGTCTAGGCGGTACTAGCTT+TGG	0.431440	1:+54157156	MsG0180002977.01.T01:CDS
GTAGTTAACAGGAAATGAAA+AGG	0.443082	1:+54156714	MsG0180002977.01.T01:intron
AGAAGCTTCTACACTGATCT+TGG	0.443492	1:-54157193	None:intergenic
TAGTTAACAGGAAATGAAAA+GGG	0.444966	1:+54156715	MsG0180002977.01.T01:intron
AGCAAAATTCTCACACAGCT+TGG	0.448378	1:-54157478	None:intergenic
GCCGCTGAATTGCGAAAGAT+AGG	0.451271	1:+54157546	MsG0180002977.01.T01:CDS
GGTGGTGGCCCAGCCGCACC+TGG	0.454343	1:+54157441	MsG0180002977.01.T01:CDS
CATCAACCCTCCCTCGTTTG+CGG	0.460993	1:-54153999	None:intergenic
CTTAGAAACATTGAACTTGA+GGG	0.465557	1:+54157318	MsG0180002977.01.T01:CDS
CCACCACCAGCAGGAGCACC+CGG	0.465994	1:-54157426	None:intergenic
TGAATTGAACGGAGGAAGAT+GGG	0.466789	1:-54153847	None:intergenic
GGCATACGACCAACATTTGT+AGG	0.466912	1:-54157111	None:intergenic
ACAAATGTTGGTCGTATGCC+TGG	0.469504	1:+54157114	MsG0180002977.01.T01:CDS
GCGGCTGGGCCACCACCAGC+AGG	0.473223	1:-54157435	None:intergenic
CTCTCTATCTCTTCTATCTA+GGG	0.474884	1:+54153905	MsG0180002977.01.T01:five_prime_UTR
TTCGCAATTCAGCGGCTCCA+TGG	0.475467	1:-54157539	None:intergenic
AGTGTAGAAGCTTCTTTGGC+TGG	0.476113	1:+54157201	MsG0180002977.01.T01:CDS
CCAACATTTGTAGGTGCCAT+TGG	0.476227	1:-54157102	None:intergenic
AAGCAGATATGTCGCCAAAC+AGG	0.477279	1:+54157255	MsG0180002977.01.T01:CDS
TGTTTCTTCCAGGTGCGGCT+GGG	0.483249	1:-54157449	None:intergenic
TCATCAACTGATGGAGCAAA+AGG	0.487156	1:-54157072	None:intergenic
TCAATTCATTGTTAGGGGTA+GGG	0.487738	1:+54153862	MsG0180002977.01.T01:five_prime_UTR
AAGTGACAACCCTCACCAAA+TGG	0.487932	1:-54156838	None:intergenic
TCGCAATTCAGCGGCTCCAT+GGG	0.491844	1:-54157538	None:intergenic
CCGGGTGCTCCTGCTGGTGG+TGG	0.502346	1:+54157426	MsG0180002977.01.T01:CDS
ATGAATTGAACGGAGGAAGA+TGG	0.504118	1:-54153848	None:intergenic
CACCCGGGGTGGATTTAGGT+GGG	0.506274	1:-54157410	None:intergenic
TGCTGGCTGTCCATTTGGTG+AGG	0.513418	1:+54156828	MsG0180002977.01.T01:CDS
GGCTGGAGCTATCATTGGAA+AGG	0.517932	1:+54157218	MsG0180002977.01.T01:CDS
CCATTGTTAGAGACTGGTGG+TGG	0.518004	1:-54156946	None:intergenic
ACATTTCTAGGAGGTGCAGC+AGG	0.522238	1:-54156916	None:intergenic
GCTGGCTGTCCATTTGGTGA+GGG	0.526668	1:+54156829	MsG0180002977.01.T01:CDS
TTCAATTCATTGTTAGGGGT+AGG	0.527816	1:+54153861	MsG0180002977.01.T01:five_prime_UTR
TCTTAGAAACATTGAACTTG+AGG	0.528176	1:+54157317	MsG0180002977.01.T01:CDS
ACATCTTTCTCCAAATGTGC+AGG	0.531941	1:-54157508	None:intergenic
GCTGGAGCTATCATTGGAAA+GGG	0.536163	1:+54157219	MsG0180002977.01.T01:CDS
ACCGAGTTCCCATTCACCAT+GGG	0.537718	1:-54157046	None:intergenic
CATCCATTGTAGTAAGAGAA+AGG	0.538183	1:-54153975	None:intergenic
GAAGAGATAGAGAGCTTGAG+AGG	0.541046	1:-54153896	None:intergenic
GCTCCTTTCTCTTACTACAA+TGG	0.545646	1:+54153972	MsG0180002977.01.T01:exon
GCCCATGGTGAATGGGAACT+CGG	0.546163	1:+54157045	MsG0180002977.01.T01:CDS
AACAAGTTTAATTCTGCTGA+AGG	0.547801	1:+54156994	MsG0180002977.01.T01:CDS
GCCCCACCTAAATCCACCCC+GGG	0.548715	1:+54157408	MsG0180002977.01.T01:CDS
TCCTATCTTTCGCAATTCAG+CGG	0.550243	1:-54157547	None:intergenic
ACCCCGGGTGCTCCTGCTGG+TGG	0.555134	1:+54157423	MsG0180002977.01.T01:CDS
CTAGTACCGCCTAGACCAGA+AGG	0.560068	1:-54157150	None:intergenic
GTAGAACCATTGTTAGAGAC+TGG	0.561991	1:-54156952	None:intergenic
TGGATGCCCGCAAACGAGGG+AGG	0.563890	1:+54153992	MsG0180002977.01.T01:CDS
AGCAACGGCATTATAACCAC+CGG	0.564491	1:-54156875	None:intergenic
TGCCCCACCTAAATCCACCC+CGG	0.566710	1:+54157407	MsG0180002977.01.T01:CDS
GGACGGTGATCATCAACTGA+TGG	0.568940	1:-54157081	None:intergenic
CCAATGGCACCTACAAATGT+TGG	0.569357	1:+54157102	MsG0180002977.01.T01:CDS
TTCTACACTGATCTTGGCAG+TGG	0.569888	1:-54157187	None:intergenic
GATAGAAGAGAAGAGAAGAA+AGG	0.570911	1:-54153795	None:intergenic
CATTTGTAGGTGCCATTGGA+CGG	0.575412	1:-54157098	None:intergenic
ACCCGGGGTGGATTTAGGTG+GGG	0.576393	1:-54157409	None:intergenic
ACCACCAGCAGGAGCACCCG+GGG	0.577197	1:-54157424	None:intergenic
AGTTAACAGGAAATGAAAAG+GGG	0.578319	1:+54156716	MsG0180002977.01.T01:intron
CACCACCAGCAGGAGCACCC+GGG	0.580328	1:-54157425	None:intergenic
AAGATTCATCATCTGAGCAA+CGG	0.583354	1:-54156890	None:intergenic
CAATGGATGCCCGCAAACGA+GGG	0.583791	1:+54153989	MsG0180002977.01.T01:exon
GAAAGATGTCACTTTGCCCA+TGG	0.584192	1:+54157522	MsG0180002977.01.T01:CDS
CTTGATGTTTCTTCCAGGTG+CGG	0.585145	1:-54157454	None:intergenic
GAAAGAGATGAGAGAAGCGA+AGG	0.588541	1:-54153819	None:intergenic
ACAATGGATGCCCGCAAACG+AGG	0.590226	1:+54153988	MsG0180002977.01.T01:exon
AATTAAACTTGTTACATATG+CGG	0.591258	1:-54156984	None:intergenic
CCACCACCAGTCTCTAACAA+TGG	0.591961	1:+54156946	MsG0180002977.01.T01:CDS
TACCGAGTTCCCATTCACCA+TGG	0.592664	1:-54157047	None:intergenic
TCCGTTCAATTCATTGTTAG+GGG	0.595373	1:+54153857	MsG0180002977.01.T01:five_prime_UTR
ACCCCTAACAATGAATTGAA+CGG	0.598565	1:-54153858	None:intergenic
GGATGCCCGCAAACGAGGGA+GGG	0.598945	1:+54153993	MsG0180002977.01.T01:CDS
AGTTGATGATCACCGTCCAA+TGG	0.605823	1:+54157086	MsG0180002977.01.T01:CDS
ATTGTTAGAGACTGGTGGTG+GGG	0.606388	1:-54156944	None:intergenic
TGCAAAACAAGAAAACATCA+TGG	0.606595	1:-54156801	None:intergenic
GAAGGAGCCTCAACTCGACC+AGG	0.607588	1:-54157132	None:intergenic
TCGTATGCCTGGTCGAGTTG+AGG	0.614018	1:+54157125	MsG0180002977.01.T01:CDS
GAATTGAACGGAGGAAGATG+GGG	0.621783	1:-54153846	None:intergenic
GGAGCTATCATTGGAAAGGG+TGG	0.621933	1:+54157222	MsG0180002977.01.T01:CDS
GTTAGAGACTGGTGGTGGGG+CGG	0.623695	1:-54156941	None:intergenic
ACCAGCAGGAGCACCCGGGG+TGG	0.624936	1:-54157421	None:intergenic
CATTGTTAGAGACTGGTGGT+GGG	0.635968	1:-54156945	None:intergenic
AATTGCACAAGCAAGTAACA+TGG	0.648235	1:+54157353	MsG0180002977.01.T01:CDS
TCCGTCAAGAAAACCAAACA+AGG	0.648477	1:+54154036	MsG0180002977.01.T01:CDS
GCAACGGCATTATAACCACC+GGG	0.665744	1:-54156874	None:intergenic
TTCTCACATCATGTTCCCGG+TGG	0.667160	1:+54156859	MsG0180002977.01.T01:CDS
GGGGCGGCAACATTTCTAGG+AGG	0.676956	1:-54156925	None:intergenic
GAACCATTGTTAGAGACTGG+TGG	0.695821	1:-54156949	None:intergenic
CCTAACAATGAATTGAACGG+AGG	0.699568	1:-54153855	None:intergenic
GAGGCTCCTTCTGGTCTAGG+CGG	0.707296	1:+54157144	MsG0180002977.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAATTACAAATTTATTTATA+TGG	-	Chr1:54154283-54154302	None:intergenic	10.0%
!!!	CTTTTAAGTAATAATATTTT+TGG	-	Chr1:54154877-54154896	None:intergenic	10.0%
!!!	TATTTTTTAAATTTAGTTGT+TGG	+	Chr1:54154204-54154223	MsG0180002977.01.T01:intron	10.0%
!!	CTATTTACAAGATAATAAAA+TGG	+	Chr1:54155398-54155417	MsG0180002977.01.T01:intron	15.0%
!!!	AAAAGAAAGAATAAGATTTT+TGG	+	Chr1:54154892-54154911	MsG0180002977.01.T01:intron	15.0%
!!!	AGATTTTAAAAATTACAATC+TGG	-	Chr1:54155605-54155624	None:intergenic	15.0%
!!!	TTAAGTTTCTTTTAGATAAA+GGG	-	Chr1:54154710-54154729	None:intergenic	15.0%
!!!	TTTAAGTTTCTTTTAGATAA+AGG	-	Chr1:54154711-54154730	None:intergenic	15.0%
!!!	TTTTCATAACAATAATACTT+TGG	+	Chr1:54156752-54156771	MsG0180002977.01.T01:CDS	15.0%
!!	ACAGAATAATGGTTTATTAA+TGG	+	Chr1:54155190-54155209	MsG0180002977.01.T01:intron	20.0%
!!	ATATTATAGGCAATGATATA+TGG	+	Chr1:54156284-54156303	MsG0180002977.01.T01:intron	20.0%
!!	ATCAAATTGTAACAGAATAA+TGG	+	Chr1:54155179-54155198	MsG0180002977.01.T01:intron	20.0%
!!	GTTTAGTCAATTAAGAAATA+CGG	+	Chr1:54155777-54155796	MsG0180002977.01.T01:intron	20.0%
!!	TTACAAGATAATAAAATGGT+TGG	+	Chr1:54155402-54155421	MsG0180002977.01.T01:intron	20.0%
!!	TTTAATTGATGTAACATAAC+AGG	-	Chr1:54156142-54156161	None:intergenic	20.0%
!!!	AATTAAACTTGTTACATATG+CGG	-	Chr1:54156987-54157006	None:intergenic	20.0%
!!!	CAATTACGGTTTATAATTTT+GGG	-	Chr1:54154734-54154753	None:intergenic	20.0%
!!!	TTAAACAGTTTTTTAAGTTC+AGG	-	Chr1:54154567-54154586	None:intergenic	20.0%
!!!	TTATTTTGATAGTAGTTAAC+AGG	+	Chr1:54156703-54156722	MsG0180002977.01.T01:intron	20.0%
!	AACTACTTAGTTGAAGTAAT+AGG	-	Chr1:54155510-54155529	None:intergenic	25.0%
!	ACATTCCTATATTCTTCTTA+AGG	+	Chr1:54156657-54156676	MsG0180002977.01.T01:intron	25.0%
!	ACTACTTAGTTGAAGTAATA+GGG	-	Chr1:54155509-54155528	None:intergenic	25.0%
!	AGCAAGATTTACAGTAATTA+AGG	-	Chr1:54155308-54155327	None:intergenic	25.0%
!	ATATCAATGGCTATAACAAT+TGG	-	Chr1:54156406-54156425	None:intergenic	25.0%
!	ATGTTAGTATTAAAGAGAGT+TGG	-	Chr1:54156083-54156102	None:intergenic	25.0%
!	ATTAAGAAATACGGAATTCT+TGG	+	Chr1:54155786-54155805	MsG0180002977.01.T01:intron	25.0%
!	GCTGATAAGTCATTATTAAA+TGG	-	Chr1:54155333-54155352	None:intergenic	25.0%
!	TAATGGTTTATTAATGGAGT+TGG	+	Chr1:54155196-54155215	MsG0180002977.01.T01:intron	25.0%
!	TAGTTAACAGGAAATGAAAA+GGG	+	Chr1:54156715-54156734	MsG0180002977.01.T01:intron	25.0%
!	TTGTTGGATTTATGTTTGTT+TGG	+	Chr1:54154220-54154239	MsG0180002977.01.T01:intron	25.0%
!	TTTATTAATGGAGTTGGAAA+AGG	+	Chr1:54155202-54155221	MsG0180002977.01.T01:intron	25.0%
!!	ATATCAACTAAAGAAGCATA+TGG	-	Chr1:54154370-54154389	None:intergenic	25.0%
!!	ATGTGTAATTTTCAACTGTT+GGG	+	Chr1:54156517-54156536	MsG0180002977.01.T01:intron	25.0%
!!	GAATGTTATTTGTTAGCTTA+TGG	-	Chr1:54156433-54156452	None:intergenic	25.0%
!!	GCAATTACGGTTTATAATTT+TGG	-	Chr1:54154735-54154754	None:intergenic	25.0%
!!	TTAATGTTTTGCAACAGAAA+TGG	+	Chr1:54154968-54154987	MsG0180002977.01.T01:intron	25.0%
!!	TTCTTTTAGATAAAGGGAAT+CGG	-	Chr1:54154704-54154723	None:intergenic	25.0%
!!!	AGTTCAATGTTTCTAAGATT+TGG	-	Chr1:54157315-54157334	None:intergenic	25.0%
!!!	GTTCAATGTTTCTAAGATTT+GGG	-	Chr1:54157314-54157333	None:intergenic	25.0%
!!!	TTCTTTCCTTTAGTTTTTCT+TGG	+	Chr1:54155957-54155976	MsG0180002977.01.T01:intron	25.0%
!!!	TTTCACTTTTTCTTCTTCTT+TGG	+	Chr1:54153939-54153958	MsG0180002977.01.T01:five_prime_UTR	25.0%
	AACAAGTTTAATTCTGCTGA+AGG	+	Chr1:54156994-54157013	MsG0180002977.01.T01:CDS	30.0%
	AGATTAGAACCTGAAAAACT+TGG	-	Chr1:54155030-54155049	None:intergenic	30.0%
	AGTTAACAGGAAATGAAAAG+GGG	+	Chr1:54156716-54156735	MsG0180002977.01.T01:intron	30.0%
	ATCTAATTCTGCATCTTAAC+TGG	+	Chr1:54155114-54155133	MsG0180002977.01.T01:intron	30.0%
	CAACAGTTGAAAATTACACA+TGG	-	Chr1:54156518-54156537	None:intergenic	30.0%
	CATCTCTTGTAGCATATTAT+AGG	+	Chr1:54156271-54156290	MsG0180002977.01.T01:intron	30.0%
	CTACTTAGTTGAAGTAATAG+GGG	-	Chr1:54155508-54155527	None:intergenic	30.0%
	CTTAGAAACATTGAACTTGA+GGG	+	Chr1:54157318-54157337	MsG0180002977.01.T01:CDS	30.0%
	CTTGTAAATAGCTTACCAAT+TGG	-	Chr1:54155389-54155408	None:intergenic	30.0%
	GAAAAACTAAAGGAAAGAAC+AGG	-	Chr1:54155956-54155975	None:intergenic	30.0%
	GATAATAAAATGGTTGGATC+AGG	+	Chr1:54155408-54155427	MsG0180002977.01.T01:intron	30.0%
	GTAGTTAACAGGAAATGAAA+AGG	+	Chr1:54156714-54156733	MsG0180002977.01.T01:intron	30.0%
	TAAATAGCTTACCAATTGGA+AGG	-	Chr1:54155385-54155404	None:intergenic	30.0%
	TACTTAGTTGAAGTAATAGG+GGG	-	Chr1:54155507-54155526	None:intergenic	30.0%
	TCAGTGTAATTACAAGTGTT+GGG	+	Chr1:54154449-54154468	MsG0180002977.01.T01:intron	30.0%
	TCTAATTCTGCATCTTAACT+GGG	+	Chr1:54155115-54155134	MsG0180002977.01.T01:intron	30.0%
	TCTGTGTTCTTGAATTTGAA+AGG	+	Chr1:54154102-54154121	MsG0180002977.01.T01:intron	30.0%
	TCTTAGAAACATTGAACTTG+AGG	+	Chr1:54157317-54157336	MsG0180002977.01.T01:CDS	30.0%
	TGCAAAACAAGAAAACATCA+TGG	-	Chr1:54156804-54156823	None:intergenic	30.0%
	TTATAACCAGTCAGATAATG+CGG	-	Chr1:54156475-54156494	None:intergenic	30.0%
	TTCAGTGTAATTACAAGTGT+TGG	+	Chr1:54154448-54154467	MsG0180002977.01.T01:intron	30.0%
	TTCATCAACTAAAATCCCAT+TGG	+	Chr1:54156227-54156246	MsG0180002977.01.T01:intron	30.0%
	TTCCACCTTAAGAAGAATAT+AGG	-	Chr1:54156665-54156684	None:intergenic	30.0%
	TTCCTATATTCTTCTTAAGG+TGG	+	Chr1:54156660-54156679	MsG0180002977.01.T01:intron	30.0%
	TTGAAAATTTGACTCCTGTT+TGG	-	Chr1:54157272-54157291	None:intergenic	30.0%
	TTGGTAGAAGGTTCAATATT+AGG	+	Chr1:54155805-54155824	MsG0180002977.01.T01:intron	30.0%
	TTGTTATAGCCATTGATATG+TGG	+	Chr1:54156407-54156426	MsG0180002977.01.T01:intron	30.0%
!	AGCTTTTGGTAAAACATTAG+AGG	+	Chr1:54155536-54155555	MsG0180002977.01.T01:intron	30.0%
!	CATGTGTAATTTTCAACTGT+TGG	+	Chr1:54156516-54156535	MsG0180002977.01.T01:intron	30.0%
!	GGAAAAGGATAATAATTTGC+AGG	+	Chr1:54155217-54155236	MsG0180002977.01.T01:intron	30.0%
!	TCAACCATCTTTTCTTCAAT+AGG	+	Chr1:54156050-54156069	MsG0180002977.01.T01:intron	30.0%
!	TCTTTAGTTGATATGAAGCA+CGG	+	Chr1:54154376-54154395	MsG0180002977.01.T01:intron	30.0%
!	TTTAGGATGATTGCTTCAAT+TGG	+	Chr1:54154786-54154805	MsG0180002977.01.T01:intron	30.0%
!!	AAGTAGTTCTATCAAGCTTT+TGG	+	Chr1:54155522-54155541	MsG0180002977.01.T01:intron	30.0%
!!	GTGTTTTGTTCACATAAATC+TGG	+	Chr1:54155847-54155866	MsG0180002977.01.T01:intron	30.0%
!!!	AACAATTGGTTTTCTTTCAG+AGG	-	Chr1:54156392-54156411	None:intergenic	30.0%
!!!	ACAATTGGTTTTCTTTCAGA+GGG	-	Chr1:54156391-54156410	None:intergenic	30.0%
	AAATTACAATCTGGTGAGAG+CGG	-	Chr1:54155596-54155615	None:intergenic	35.0%
	AACACAGAACAAGCAATCAA+AGG	-	Chr1:54155725-54155744	None:intergenic	35.0%
	AACCTGAAAAACTTGGTACA+AGG	-	Chr1:54155023-54155042	None:intergenic	35.0%
	AAGATTCATCATCTGAGCAA+CGG	-	Chr1:54156893-54156912	None:intergenic	35.0%
	AATACGGAATTCTTGGTAGA+AGG	+	Chr1:54155793-54155812	MsG0180002977.01.T01:intron	35.0%
	AATTGCACAAGCAAGTAACA+TGG	+	Chr1:54157353-54157372	MsG0180002977.01.T01:CDS	35.0%
	ACCCCTAACAATGAATTGAA+CGG	-	Chr1:54153861-54153880	None:intergenic	35.0%
	ACTATATCAACCTTCAACTC+AGG	-	Chr1:54154840-54154859	None:intergenic	35.0%
	AGATGAGAAAAACCAATGGT+AGG	-	Chr1:54156256-54156275	None:intergenic	35.0%
	AGCACCTATTGAAGAAAAGA+TGG	-	Chr1:54156057-54156076	None:intergenic	35.0%
	ATAGGCAATGATATATGGTG+TGG	+	Chr1:54156289-54156308	MsG0180002977.01.T01:intron	35.0%
	ATGGAAGCAATGATCTATGT+TGG	-	Chr1:54156499-54156518	None:intergenic	35.0%
	ATTTAGTGTTCCCATTGTCA+TGG	-	Chr1:54155248-54155267	None:intergenic	35.0%
	CAAGAGATGAGAAAAACCAA+TGG	-	Chr1:54156260-54156279	None:intergenic	35.0%
	CATCCATTGTAGTAAGAGAA+AGG	-	Chr1:54153978-54153997	None:intergenic	35.0%
	CTATATCAACCTTCAACTCA+GGG	-	Chr1:54154839-54154858	None:intergenic	35.0%
	CTCCGTTCAATTCATTGTTA+GGG	+	Chr1:54153856-54153875	MsG0180002977.01.T01:five_prime_UTR	35.0%
	CTCTCTATCTCTTCTATCTA+GGG	+	Chr1:54153905-54153924	MsG0180002977.01.T01:five_prime_UTR	35.0%
	GAACAACTAAAACACTGCAA+TGG	-	Chr1:54155893-54155912	None:intergenic	35.0%
	GATAGAAGAGAAGAGAAGAA+AGG	-	Chr1:54153798-54153817	None:intergenic	35.0%
	GCATAAACAAAGTTCTCTCT+TGG	-	Chr1:54155478-54155497	None:intergenic	35.0%
	GGAAGACCAAGAAAAACTAA+AGG	-	Chr1:54155966-54155985	None:intergenic	35.0%
	GGTGAAAAAGAAACCTTGTT+TGG	-	Chr1:54154052-54154071	None:intergenic	35.0%
	GTAGTGTGTTATCTAACCTT+TGG	+	Chr1:54156334-54156353	MsG0180002977.01.T01:intron	35.0%
	TAAGATTTGGGTCAGATTCA+TGG	-	Chr1:54157302-54157321	None:intergenic	35.0%
	TCAATTCATTGTTAGGGGTA+GGG	+	Chr1:54153862-54153881	MsG0180002977.01.T01:five_prime_UTR	35.0%
	TCCGTTCAATTCATTGTTAG+GGG	+	Chr1:54153857-54153876	MsG0180002977.01.T01:five_prime_UTR	35.0%
	TGAATTTCACATGACAAGCA+TGG	-	Chr1:54154347-54154366	None:intergenic	35.0%
	TTAGACACAGACGCATAATT+TGG	-	Chr1:54155442-54155461	None:intergenic	35.0%
	TTCAATTCATTGTTAGGGGT+AGG	+	Chr1:54153861-54153880	MsG0180002977.01.T01:five_prime_UTR	35.0%
	TTTAGTGTTCCCATTGTCAT+GGG	-	Chr1:54155247-54155266	None:intergenic	35.0%
!	AATCTAGACTTAGCTGGTTT+GGG	-	Chr1:54156031-54156050	None:intergenic	35.0%
!	ATCTCTTCTATCTAGGGTTA+GGG	+	Chr1:54153911-54153930	MsG0180002977.01.T01:five_prime_UTR	35.0%
!	CAGTGTAATTACAAGTGTTG+GGG	+	Chr1:54154450-54154469	MsG0180002977.01.T01:intron	35.0%
!	CTGTGTGAGAATTTTGCTAA+AGG	+	Chr1:54157483-54157502	MsG0180002977.01.T01:CDS	35.0%
!	GGGTATTCTAAGCTTTATAC+AGG	+	Chr1:54155135-54155154	MsG0180002977.01.T01:intron	35.0%
!	TATCTCTTCTATCTAGGGTT+AGG	+	Chr1:54153910-54153929	MsG0180002977.01.T01:five_prime_UTR	35.0%
!!	TCAGAGAGTGTTCAAAGTTT+AGG	+	Chr1:54154769-54154788	MsG0180002977.01.T01:intron	35.0%
!!!	ACCTTGTTTGGTTTTCTTGA+CGG	-	Chr1:54154040-54154059	None:intergenic	35.0%
	AACCAATGGTAGGTTTCCAA+TGG	-	Chr1:54156246-54156265	None:intergenic	40.0%
	AACCATATCGTATCCACCAA+AGG	-	Chr1:54156353-54156372	None:intergenic	40.0%
	ACATCTTTCTCCAAATGTGC+AGG	-	Chr1:54157511-54157530	None:intergenic	40.0%
	ACCAATGGTAGGTTTCCAAT+GGG	-	Chr1:54156245-54156264	None:intergenic	40.0%
	AGAAGCTTCTACACTGATCT+TGG	-	Chr1:54157196-54157215	None:intergenic	40.0%
	AGACTTCTGCATCATGTACA+AGG	+	Chr1:54156161-54156180	MsG0180002977.01.T01:intron	40.0%
	AGCAAAATTCTCACACAGCT+TGG	-	Chr1:54157481-54157500	None:intergenic	40.0%
	AGCTTATGGCCACATATCAA+TGG	-	Chr1:54156419-54156438	None:intergenic	40.0%
	ATAGCTTACCAATTGGAAGG+TGG	-	Chr1:54155382-54155401	None:intergenic	40.0%
	ATGAATTGAACGGAGGAAGA+TGG	-	Chr1:54153851-54153870	None:intergenic	40.0%
	CCTAACAATGAATTGAACGG+AGG	-	Chr1:54153858-54153877	None:intergenic	40.0%
	CCTCCGTTCAATTCATTGTT+AGG	+	Chr1:54153855-54153874	MsG0180002977.01.T01:five_prime_UTR	40.0%
	CGGATCAGAACAATGACTAT+CGG	-	Chr1:54156455-54156474	None:intergenic	40.0%
	GAATCTAGACTTAGCTGGTT+TGG	-	Chr1:54156032-54156051	None:intergenic	40.0%
	GACTTCTGCATCATGTACAA+GGG	+	Chr1:54156162-54156181	MsG0180002977.01.T01:intron	40.0%
	GATCAGTGTAGAAGCTTCTT+TGG	+	Chr1:54157197-54157216	MsG0180002977.01.T01:CDS	40.0%
	GATGAAACCAGATCAACTCA+TGG	-	Chr1:54156213-54156232	None:intergenic	40.0%
	GCACAACTCTGTTGCAATTA+CGG	-	Chr1:54154748-54154767	None:intergenic	40.0%
	GCTCCTTTCTCTTACTACAA+TGG	+	Chr1:54153972-54153991	MsG0180002977.01.T01:exon	40.0%
	GCTCTCTATCTCTTCTATCT+AGG	+	Chr1:54153904-54153923	MsG0180002977.01.T01:five_prime_UTR	40.0%
	GTAGAACCATTGTTAGAGAC+TGG	-	Chr1:54156955-54156974	None:intergenic	40.0%
	GTGTGTTATCTAACCTTTGG+TGG	+	Chr1:54156337-54156356	MsG0180002977.01.T01:intron	40.0%
	TAGCTTACCAATTGGAAGGT+GGG	-	Chr1:54155381-54155400	None:intergenic	40.0%
	TAGTTGAAGTAATAGGGGGA+CGG	-	Chr1:54155503-54155522	None:intergenic	40.0%
	TCATCAACTGATGGAGCAAA+AGG	-	Chr1:54157075-54157094	None:intergenic	40.0%
	TCCGTCAAGAAAACCAAACA+AGG	+	Chr1:54154036-54154055	MsG0180002977.01.T01:CDS	40.0%
	TCCTATCTTTCGCAATTCAG+CGG	-	Chr1:54157550-54157569	None:intergenic	40.0%
	TGAATTGAACGGAGGAAGAT+GGG	-	Chr1:54153850-54153869	None:intergenic	40.0%
	TGCTTGTTCTGTGTTTACGT+AGG	+	Chr1:54155730-54155749	MsG0180002977.01.T01:intron	40.0%
	TGGTTGAATCTAGACTTAGC+TGG	-	Chr1:54156037-54156056	None:intergenic	40.0%
	TTCGACAACAGAGTTTCAGA+GGG	-	Chr1:54154596-54154615	None:intergenic	40.0%
	TTGCTTCAACCTATGAAGCA+TGG	-	Chr1:54154514-54154533	None:intergenic	40.0%
!	AACCTTTGGTGGATACGATA+TGG	+	Chr1:54156348-54156367	MsG0180002977.01.T01:intron	40.0%
!	ATTGCTTCAATTGGAAGCAC+AGG	+	Chr1:54154795-54154814	MsG0180002977.01.T01:intron	40.0%
!	ATTTTCAACTGTTGGGCACT+TGG	+	Chr1:54156524-54156543	MsG0180002977.01.T01:intron	40.0%
!	TTTTCAACTGTTGGGCACTT+GGG	+	Chr1:54156525-54156544	MsG0180002977.01.T01:intron	40.0%
!!	AGCCTTGTACCAAGTTTTTC+AGG	+	Chr1:54155018-54155037	MsG0180002977.01.T01:intron	40.0%
!!	TCACTGGAATTTGCTATCGA+TGG	+	Chr1:54154620-54154639	MsG0180002977.01.T01:intron	40.0%
!!	TTGGTCTTGATGTTTCTTCC+AGG	-	Chr1:54157462-54157481	None:intergenic	40.0%
!!	TTGGTTTTCTTTCAGAGGGA+GGG	-	Chr1:54156387-54156406	None:intergenic	40.0%
!!!	ATTGGTTTTCTTTCAGAGGG+AGG	-	Chr1:54156388-54156407	None:intergenic	40.0%
!!!	GCTGCTCTGTGTTTTTTCTT+CGG	+	Chr1:54153770-54153789	MsG0180002977.01.T01:five_prime_UTR	40.0%
!!!	TTCTTGTTTTGCAGCATTGC+TGG	+	Chr1:54156811-54156830	MsG0180002977.01.T01:CDS	40.0%
	AAGCAGATATGTCGCCAAAC+AGG	+	Chr1:54157255-54157274	MsG0180002977.01.T01:CDS	45.0%
	AAGTGACAACCCTCACCAAA+TGG	-	Chr1:54156841-54156860	None:intergenic	45.0%
	ACAAATGTTGGTCGTATGCC+TGG	+	Chr1:54157114-54157133	MsG0180002977.01.T01:CDS	45.0%
	ACTGATCTTGGCAGTGGAAT+TGG	-	Chr1:54157184-54157203	None:intergenic	45.0%
	AGCAACGGCATTATAACCAC+CGG	-	Chr1:54156878-54156897	None:intergenic	45.0%
	AGTGTAGAAGCTTCTTTGGC+TGG	+	Chr1:54157201-54157220	MsG0180002977.01.T01:CDS	45.0%
	CACTTCTCACATCATGTTCC+CGG	+	Chr1:54156856-54156875	MsG0180002977.01.T01:CDS	45.0%
	CAGGTGATTAGACTTGACTG+TGG	-	Chr1:54156123-54156142	None:intergenic	45.0%
	CATTGTTAGAGACTGGTGGT+GGG	-	Chr1:54156948-54156967	None:intergenic	45.0%
	CATTGTTAGGGGTAGGGTTA+GGG	+	Chr1:54153868-54153887	MsG0180002977.01.T01:five_prime_UTR	45.0%
	CCAATGCTACAAAGCTGATC+AGG	-	Chr1:54155661-54155680	None:intergenic	45.0%
	CCAATGGCACCTACAAATGT+TGG	+	Chr1:54157102-54157121	MsG0180002977.01.T01:CDS	45.0%
	CTTCGACAACAGAGTTTCAG+AGG	-	Chr1:54154597-54154616	None:intergenic	45.0%
	CTTGATGTTTCTTCCAGGTG+CGG	-	Chr1:54157457-54157476	None:intergenic	45.0%
	GAAAGAGATGAGAGAAGCGA+AGG	-	Chr1:54153822-54153841	None:intergenic	45.0%
	GAACCATTGTTAGAGACTGG+TGG	-	Chr1:54156952-54156971	None:intergenic	45.0%
	GAAGAGATAGAGAGCTTGAG+AGG	-	Chr1:54153899-54153918	None:intergenic	45.0%
	GAATTGAACGGAGGAAGATG+GGG	-	Chr1:54153849-54153868	None:intergenic	45.0%
	GCTAAAGGATCCTGCACATT+TGG	+	Chr1:54157498-54157517	MsG0180002977.01.T01:CDS	45.0%
	GCTGGAGCTATCATTGGAAA+GGG	+	Chr1:54157219-54157238	MsG0180002977.01.T01:CDS	45.0%
	GGCATACGACCAACATTTGT+AGG	-	Chr1:54157114-54157133	None:intergenic	45.0%
	TATGAAGCATGGACACTCCT+CGG	-	Chr1:54154503-54154522	None:intergenic	45.0%
	TCATTGTTAGGGGTAGGGTT+AGG	+	Chr1:54153867-54153886	MsG0180002977.01.T01:five_prime_UTR	45.0%
	TCCCATTGGAAACCTACCAT+TGG	+	Chr1:54156241-54156260	MsG0180002977.01.T01:intron	45.0%
	TCTGATCCGCATTATCTGAC+TGG	+	Chr1:54156466-54156485	MsG0180002977.01.T01:intron	45.0%
	TCTGCTGAAGGCTGCAAATT+TGG	+	Chr1:54157006-54157025	MsG0180002977.01.T01:CDS	45.0%
	TCTGTTGTCGAAGTAGTCAC+TGG	+	Chr1:54154604-54154623	MsG0180002977.01.T01:intron	45.0%
	TCTTTGGCTGGAGCTATCAT+TGG	+	Chr1:54157213-54157232	MsG0180002977.01.T01:CDS	45.0%
	TGATGAACCCACCTTCCAAT+TGG	+	Chr1:54155371-54155390	MsG0180002977.01.T01:intron	45.0%
	TTCTACACTGATCTTGGCAG+TGG	-	Chr1:54157190-54157209	None:intergenic	45.0%
!	AGGAGAGTACAACAGTTGGA+GGG	-	Chr1:54155999-54156018	None:intergenic	45.0%
!	AGTGAGGAGAGTACAACAGT+TGG	-	Chr1:54156003-54156022	None:intergenic	45.0%
!	ATTGTTAGAGACTGGTGGTG+GGG	-	Chr1:54156947-54156966	None:intergenic	45.0%
!	CCAACATTTGTAGGTGCCAT+TGG	-	Chr1:54157105-54157124	None:intergenic	45.0%
!	CCATTTTGCCCATGGTGAAT+GGG	+	Chr1:54157038-54157057	MsG0180002977.01.T01:CDS	45.0%
!	CCTGATCAGCTTTGTAGCAT+TGG	+	Chr1:54155658-54155677	MsG0180002977.01.T01:intron	45.0%
!	GAAATGGACTCAACTGGTGT+AGG	+	Chr1:54154984-54155003	MsG0180002977.01.T01:intron	45.0%
!	GATGCAGTTGCGGATTAACT+TGG	+	Chr1:54156588-54156607	MsG0180002977.01.T01:intron	45.0%
!	GCAACAGAAATGGACTCAAC+TGG	+	Chr1:54154978-54154997	MsG0180002977.01.T01:intron	45.0%
!	TTCACATGACCCTGAGTTGA+AGG	+	Chr1:54154827-54154846	MsG0180002977.01.T01:intron	45.0%
!!	ACAGACACCATGAGTTGATC+TGG	+	Chr1:54156203-54156222	MsG0180002977.01.T01:intron	45.0%
!!	AGGGTTGATGCTGCTGTTAA+TGG	+	Chr1:54154012-54154031	MsG0180002977.01.T01:CDS	45.0%
!!	AGTTGATGATCACCGTCCAA+TGG	+	Chr1:54157086-54157105	MsG0180002977.01.T01:CDS	45.0%
!!	CATTTGTAGGTGCCATTGGA+CGG	-	Chr1:54157101-54157120	None:intergenic	45.0%
!!	GAAAGATGTCACTTTGCCCA+TGG	+	Chr1:54157522-54157541	MsG0180002977.01.T01:CDS	45.0%
!!	AATAAATAAATAAAATAAAG+AGG	-	Chr1:54154073-54154092	None:intergenic	5.0%
	AAAGAACAGGACCAGAGCAG+TGG	-	Chr1:54155943-54155962	None:intergenic	50.0%
	ACCGAGTTCCCATTCACCAT+GGG	-	Chr1:54157049-54157068	None:intergenic	50.0%
	CATGGACACTCCTCGGATTA+GGG	-	Chr1:54154496-54154515	None:intergenic	50.0%
	CCACCACCAGTCTCTAACAA+TGG	+	Chr1:54156946-54156965	MsG0180002977.01.T01:CDS	50.0%
	CCATTGTTAGAGACTGGTGG+TGG	-	Chr1:54156949-54156968	None:intergenic	50.0%
	CCCATTCACCATGGGCAAAA+TGG	-	Chr1:54157041-54157060	None:intergenic	50.0%
	GCAACGGCATTATAACCACC+GGG	-	Chr1:54156877-54156896	None:intergenic	50.0%
	GCAGGAAGACCCATGACAAT+GGG	+	Chr1:54155235-54155254	MsG0180002977.01.T01:intron	50.0%
	GCCGCTGAATTGCGAAAGAT+AGG	+	Chr1:54157546-54157565	MsG0180002977.01.T01:CDS	50.0%
	GCTTTGCTCTGATGCAGTTG+CGG	+	Chr1:54156578-54156597	MsG0180002977.01.T01:intron	50.0%
	GGACGGTGATCATCAACTGA+TGG	-	Chr1:54157084-54157103	None:intergenic	50.0%
	GGAGCTATCATTGGAAAGGG+TGG	+	Chr1:54157222-54157241	MsG0180002977.01.T01:CDS	50.0%
	GGCTGGAGCTATCATTGGAA+AGG	+	Chr1:54157218-54157237	MsG0180002977.01.T01:CDS	50.0%
	GTACAACAGTTGGAGGGAAG+AGG	-	Chr1:54155993-54156012	None:intergenic	50.0%
	TACCGAGTTCCCATTCACCA+TGG	-	Chr1:54157050-54157069	None:intergenic	50.0%
	TGCAGGAAGACCCATGACAA+TGG	+	Chr1:54155234-54155253	MsG0180002977.01.T01:intron	50.0%
	TTCTCACATCATGTTCCCGG+TGG	+	Chr1:54156859-54156878	MsG0180002977.01.T01:CDS	50.0%
!	ACATTTCTAGGAGGTGCAGC+AGG	-	Chr1:54156919-54156938	None:intergenic	50.0%
!	AGCATTGCTGGCTGTCCATT+TGG	+	Chr1:54156823-54156842	MsG0180002977.01.T01:CDS	50.0%
!	GAGGAGAGTACAACAGTTGG+AGG	-	Chr1:54156000-54156019	None:intergenic	50.0%
!	GCTTCAATTGGAAGCACAGG+TGG	+	Chr1:54154798-54154817	MsG0180002977.01.T01:intron	50.0%
!!	AACCATCGCTCTGGAGCAAA+GGG	-	Chr1:54155634-54155653	None:intergenic	50.0%
!!	ATCTGCTGTTTCCACTGCTC+TGG	+	Chr1:54155929-54155948	MsG0180002977.01.T01:intron	50.0%
!!	GAGGAGTGTCCATGCTTCAT+AGG	+	Chr1:54154502-54154521	MsG0180002977.01.T01:intron	50.0%
!!	GCCATTTTGCCCATGGTGAA+TGG	+	Chr1:54157037-54157056	MsG0180002977.01.T01:CDS	50.0%
!!	GCTGGTTTGGGCATATAGTG+AGG	-	Chr1:54156019-54156038	None:intergenic	50.0%
!!	TACAAGTGTTGGGGTCGTGT+CGG	+	Chr1:54154459-54154478	MsG0180002977.01.T01:intron	50.0%
!!!	GACAAGTGCCATTTTGCCCA+TGG	+	Chr1:54157030-54157049	MsG0180002977.01.T01:CDS	50.0%
	ACAATGGATGCCCGCAAACG+AGG	+	Chr1:54153988-54154007	MsG0180002977.01.T01:exon	55.0%
	ATCAACCCTCCCTCGTTTGC+GGG	-	Chr1:54154001-54154020	None:intergenic	55.0%
	ATGTTTCTTCCAGGTGCGGC+TGG	-	Chr1:54157453-54157472	None:intergenic	55.0%
	ATTAGCAGTATCGCCGCGTC+AGG	-	Chr1:54154410-54154429	None:intergenic	55.0%
	CAATGGATGCCCGCAAACGA+GGG	+	Chr1:54153989-54154008	MsG0180002977.01.T01:exon	55.0%
	CATCAACCCTCCCTCGTTTG+CGG	-	Chr1:54154002-54154021	None:intergenic	55.0%
	CTAGTACCGCCTAGACCAGA+AGG	-	Chr1:54157153-54157172	None:intergenic	55.0%
	GAACGGAGGAAGATGGGGTT+TGG	-	Chr1:54153844-54153863	None:intergenic	55.0%
	GCATGGACACTCCTCGGATT+AGG	-	Chr1:54154497-54154516	None:intergenic	55.0%
	GCCCATGGTGAATGGGAACT+CGG	+	Chr1:54157045-54157064	MsG0180002977.01.T01:CDS	55.0%
	GTTGAGGCTCCTTCTGGTCT+AGG	+	Chr1:54157141-54157160	MsG0180002977.01.T01:CDS	55.0%
	TACCTGGACACCCTAATCCG+AGG	+	Chr1:54154483-54154502	MsG0180002977.01.T01:intron	55.0%
	TCGCAATTCAGCGGCTCCAT+GGG	-	Chr1:54157541-54157560	None:intergenic	55.0%
	TGTTTCTTCCAGGTGCGGCT+GGG	-	Chr1:54157452-54157471	None:intergenic	55.0%
	TTAGCAGTATCGCCGCGTCA+GGG	-	Chr1:54154409-54154428	None:intergenic	55.0%
	TTCGCAATTCAGCGGCTCCA+TGG	-	Chr1:54157542-54157561	None:intergenic	55.0%
!	GCTGGCTGTCCATTTGGTGA+GGG	+	Chr1:54156829-54156848	MsG0180002977.01.T01:CDS	55.0%
!	GGTCTAGGCGGTACTAGCTT+TGG	+	Chr1:54157156-54157175	MsG0180002977.01.T01:CDS	55.0%
!	TCGTATGCCTGGTCGAGTTG+AGG	+	Chr1:54157125-54157144	MsG0180002977.01.T01:CDS	55.0%
!	TGCTGGCTGTCCATTTGGTG+AGG	+	Chr1:54156828-54156847	MsG0180002977.01.T01:CDS	55.0%
!!	ACCATCGCTCTGGAGCAAAG+GGG	-	Chr1:54155633-54155652	None:intergenic	55.0%
!!	CAACCATCGCTCTGGAGCAA+AGG	-	Chr1:54155635-54155654	None:intergenic	55.0%
	CAGTTGGAGGGAAGAGGCAG+AGG	-	Chr1:54155987-54156006	None:intergenic	60.0%
	GAAGGAGCCTCAACTCGACC+AGG	-	Chr1:54157135-54157154	None:intergenic	60.0%
	GAGGCTCCTTCTGGTCTAGG+CGG	+	Chr1:54157144-54157163	MsG0180002977.01.T01:CDS	60.0%
	GGTGGGGCGGCAACATTTCT+AGG	-	Chr1:54156931-54156950	None:intergenic	60.0%
	TCAGGACGCAACCATCGCTC+TGG	-	Chr1:54155643-54155662	None:intergenic	60.0%
	TCCCCTTTGCTCCAGAGCGA+TGG	+	Chr1:54155629-54155648	MsG0180002977.01.T01:intron	60.0%
	TGCCCCACCTAAATCCACCC+CGG	+	Chr1:54157407-54157426	MsG0180002977.01.T01:CDS	60.0%
	TTGGGGTCGTGTCGGATACC+TGG	+	Chr1:54154467-54154486	MsG0180002977.01.T01:intron	60.0%
!	ACCCGGGGTGGATTTAGGTG+GGG	-	Chr1:54157412-54157431	None:intergenic	60.0%
!	CACCCGGGGTGGATTTAGGT+GGG	-	Chr1:54157413-54157432	None:intergenic	60.0%
!	CTCCTCGGATTAGGGTGTCC+AGG	-	Chr1:54154488-54154507	None:intergenic	60.0%
!	GGGGCGGCAACATTTCTAGG+AGG	-	Chr1:54156928-54156947	None:intergenic	60.0%
!!	GGTCGAGTTGAGGCTCCTTC+TGG	+	Chr1:54157135-54157154	MsG0180002977.01.T01:CDS	60.0%
!!	GTTAGAGACTGGTGGTGGGG+CGG	-	Chr1:54156944-54156963	None:intergenic	60.0%
	CACGGACACAGACCCTGACG+CGG	+	Chr1:54154394-54154413	MsG0180002977.01.T01:intron	65.0%
	GCCCCACCTAAATCCACCCC+GGG	+	Chr1:54157408-54157427	MsG0180002977.01.T01:CDS	65.0%
	GGATGCCCGCAAACGAGGGA+GGG	+	Chr1:54153993-54154012	MsG0180002977.01.T01:CDS	65.0%
	TGGATGCCCGCAAACGAGGG+AGG	+	Chr1:54153992-54154011	MsG0180002977.01.T01:CDS	65.0%
!	GCACCCGGGGTGGATTTAGG+TGG	-	Chr1:54157414-54157433	None:intergenic	65.0%
!	GGAGCACCCGGGGTGGATTT+AGG	-	Chr1:54157417-54157436	None:intergenic	65.0%
!!	ACCACCAGCAGGAGCACCCG+GGG	-	Chr1:54157427-54157446	None:intergenic	70.0%
!!	CACCACCAGCAGGAGCACCC+GGG	-	Chr1:54157428-54157447	None:intergenic	70.0%
!!	CCACCACCAGCAGGAGCACC+CGG	-	Chr1:54157429-54157448	None:intergenic	70.0%
	ACCCCGGGTGCTCCTGCTGG+TGG	+	Chr1:54157423-54157442	MsG0180002977.01.T01:CDS	75.0%
	CCGGGTGCTCCTGCTGGTGG+TGG	+	Chr1:54157426-54157445	MsG0180002977.01.T01:CDS	75.0%
	TCCACCCCGGGTGCTCCTGC+TGG	+	Chr1:54157420-54157439	MsG0180002977.01.T01:CDS	75.0%
!!	ACCAGCAGGAGCACCCGGGG+TGG	-	Chr1:54157424-54157443	None:intergenic	75.0%
!	GCGGCTGGGCCACCACCAGC+AGG	-	Chr1:54157438-54157457	None:intergenic	80.0%
!!	GGTGGTGGCCCAGCCGCACC+TGG	+	Chr1:54157441-54157460	MsG0180002977.01.T01:CDS	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	54153770	54157575	54153770	ID=MsG0180002977.01;Name=MsG0180002977.01
Chr1	mRNA	54153770	54157575	54153770	ID=MsG0180002977.01.T01;Parent=MsG0180002977.01;Name=MsG0180002977.01.T01;_AED=0.36;_eAED=0.42;_QI=221\|0\|0.5\|1\|1\|1\|2\|0\|305
Chr1	exon	54153770	54154057	54153770	ID=MsG0180002977.01.T01:exon:47882;Parent=MsG0180002977.01.T01
Chr1	exon	54156725	54157575	54156725	ID=MsG0180002977.01.T01:exon:47883;Parent=MsG0180002977.01.T01
Chr1	five_prime_UTR	54153770	54153990	54153770	ID=MsG0180002977.01.T01:five_prime_utr;Parent=MsG0180002977.01.T01
Chr1	CDS	54153991	54154057	54153991	ID=MsG0180002977.01.T01:cds;Parent=MsG0180002977.01.T01
Chr1	CDS	54156725	54157575	54156725	ID=MsG0180002977.01.T01:cds;Parent=MsG0180002977.01.T01

Gene Sequence

>MsG0180002977.01.T01

ATGGATGCCCGCAAACGAGGGAGGGTTGATGCTGCTGTTAATGGCTCCGTCAAGAAAACCAAACAAGGAAATGAAAAGGGGAAGATTGCATTTATTTTCATAACAATAATACTTTGGTATGATGATGATCTCATTGTGTTATGCCATGATGTTTTCTTGTTTTGCAGCATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCACATCATGTTCCCGGTGGTTATAATGCCGTTGCTCAGATGATGAATCTTAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACCAGTCTCTAACAATGGTTCTACTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCCAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTAGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTGCTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCGGGTGCTCCTGCTGGTGGTGGCCCAGCCGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCCTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCCGCTGAATTGCGAAAGATAGGAATCTAA

Protein sequence

>MsG0180002977.01.T01

MDARKRGRVDAAVNGSVKKTKQGNEKGKIAFIFITIILWYDDDLIVLCHDVFLFCSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSTVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSVDDHRPMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKIGI*