AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006809.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006809.01.T01 MTR_2g015520 98.462 130 2 0 1 130 113 242 3.73e-87 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006809.01.T01 AT5G16790 69.531 128 30 2 2 129 115 233 1.63e-52 166
MsG0280006809.01.T01 AT5G16790 69.531 128 30 2 2 129 115 233 1.63e-52 166
MsG0280006809.01.T01 AT3G02950 66.929 127 35 1 3 129 117 236 1.46e-51 163
MsG0280006809.01.T01 AT3G02950 66.929 127 35 1 3 129 117 236 1.46e-51 163

Find 59 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGCTGGTTCGAGATTAT+TGG 0.251267 2:+6596353 MsG0280006809.01.T01:CDS
GAGACTTTCAATCTAGTTAA+TGG 0.258938 2:-6598323 None:intergenic
CGCACACGCATCCCCGAAAA+AGG 0.283619 2:+6595572 MsG0280006809.01.T01:five_prime_UTR
AGGAAGAGTGTGAGGCTATT+AGG 0.287738 2:+6596241 MsG0280006809.01.T01:CDS
CGCCTCGAGTTGTTGTTGTT+CGG 0.312467 2:-6595927 None:intergenic
CGGTGAGAGCGGTTCAGTTT+TGG 0.326981 2:-6595519 None:intergenic
GCCTCGAGTTGTTGTTGTTC+GGG 0.334237 2:-6595926 None:intergenic
TCTCCTCGACTAGACTCTTT+TGG 0.350171 2:-6598227 None:intergenic
CGATCGTTGAAGCTAATGTT+AGG 0.370769 2:+6596100 MsG0280006809.01.T01:five_prime_UTR
GAAACAGTTGGAGGAGAGTA+AGG 0.379015 2:+6596203 MsG0280006809.01.T01:CDS
CGGGGATGCGTGTGCGGTGG+TGG 0.392118 2:-6595565 None:intergenic
CGATCGCTTTACTCTTCAAA+AGG 0.399010 2:-6596083 None:intergenic
TGATCAAGAAATCGAGATGC+AGG 0.436673 2:+6595805 MsG0280006809.01.T01:intron
AATGCGTAGTTTGCTGCTAC+TGG 0.437105 2:-6595860 None:intergenic
GATCGCTTTACTCTTCAAAA+GGG 0.447955 2:-6596082 None:intergenic
GGAGAAGGAGATTGCGGCGT+TGG 0.451408 2:+6596320 MsG0280006809.01.T01:CDS
GTCTTCATCTTTGTCTACCT+CGG 0.480444 2:-6595995 None:intergenic
GCAACTGAGGAGCTCAAGAA+TGG 0.484542 2:+6598258 MsG0280006809.01.T01:CDS
TGAGGATTTGAAGAAACAGT+TGG 0.488856 2:+6596191 MsG0280006809.01.T01:CDS
GCAGGCGCAGATTGATATTG+AGG 0.489222 2:+6596173 MsG0280006809.01.T01:CDS
TTGTTGTTCGGGTTAGAAGC+CGG 0.497819 2:-6595915 None:intergenic
TAAGGTTGAGAGACGACATA+AGG 0.511785 2:+6596221 MsG0280006809.01.T01:CDS
ATGGGATGGAAGACGCAAGT+GGG 0.512883 2:+6598277 MsG0280006809.01.T01:CDS
CCGTGTCTGTGTCTGAATCC+CGG 0.517719 2:-6595539 None:intergenic
GGATTTGAAGAAACAGTTGG+AGG 0.520412 2:+6596194 MsG0280006809.01.T01:CDS
AAAACTGAACCGCTCTCACC+GGG 0.522965 2:+6595521 MsG0280006809.01.T01:five_prime_UTR
GATCGTTGAAGCTAATGTTA+GGG 0.527875 2:+6596101 MsG0280006809.01.T01:five_prime_UTR
CAAAACTGAACCGCTCTCAC+CGG 0.528832 2:+6595520 MsG0280006809.01.T01:five_prime_UTR
GTAGCAGCAAACTACGCATT+CGG 0.536914 2:+6595863 MsG0280006809.01.T01:five_prime_UTR
GTTTACAAAGTTCTAAGCAC+TGG 0.539209 2:-6598420 None:intergenic
ATGATTACGTCGTCGATCGA+AGG 0.555733 2:-6595887 None:intergenic
TTGGATGCTGAGAATACTGC+TGG 0.557186 2:+6596339 MsG0280006809.01.T01:CDS
CAACTGAGGAGCTCAAGAAT+GGG 0.559589 2:+6598259 MsG0280006809.01.T01:CDS
GCCGAGATCTGAGACGCAAA+AGG 0.561433 2:+6596284 MsG0280006809.01.T01:CDS
GTGAGGAAGGTTTCCGCTCG+TGG 0.568924 2:+6595833 MsG0280006809.01.T01:five_prime_UTR
TGAAGCTAATGTTAGGGAGA+AGG 0.570092 2:+6596107 MsG0280006809.01.T01:five_prime_UTR
TGAGTTGCAGAATACAATAG+AGG 0.581608 2:+6598200 MsG0280006809.01.T01:CDS
TGCTACTGGTTCACCACGAG+CGG 0.583140 2:-6595846 None:intergenic
TGGGATGGAAGACGCAAGTG+GGG 0.586364 2:+6598278 MsG0280006809.01.T01:CDS
TTTCGGGGATGCGTGTGCGG+TGG 0.587244 2:-6595568 None:intergenic
GATGCAGGGAAGAGTGAGGA+AGG 0.587652 2:+6595820 MsG0280006809.01.T01:five_prime_UTR
TCGAGATGCAGGGAAGAGTG+AGG 0.595243 2:+6595816 MsG0280006809.01.T01:five_prime_UTR
GGGATGGAAGACGCAAGTGG+GGG 0.601728 2:+6598279 MsG0280006809.01.T01:CDS
GTTCGAGATTATTGGAGCTG+AGG 0.603938 2:+6596361 MsG0280006809.01.T01:CDS
GGATGGAAGACGCAAGTGGG+GGG 0.604754 2:+6598280 MsG0280006809.01.T01:CDS
TGTTACACAACAAAATTCAG+AGG 0.608817 2:-6598465 None:intergenic
TGAGGAGCTCAAGAATGGGA+TGG 0.612591 2:+6598263 MsG0280006809.01.T01:CDS
ATCGCTTTACTCTTCAAAAG+GGG 0.616034 2:-6596081 None:intergenic
GATCAAGAAATCGAGATGCA+GGG 0.623112 2:+6595806 MsG0280006809.01.T01:intron
TGTCTGAATCCCGGTGAGAG+CGG 0.626679 2:-6595530 None:intergenic
ACGACATAAGGAAGAGTGTG+AGG 0.627243 2:+6596233 MsG0280006809.01.T01:CDS
AATGGGATGGAAGACGCAAG+TGG 0.636677 2:+6598276 MsG0280006809.01.T01:CDS
AATGAATCGACAGATTGCGC+AGG 0.638047 2:+6596155 MsG0280006809.01.T01:exon
ACCCGAACAACAACAACTCG+AGG 0.642499 2:+6595925 MsG0280006809.01.T01:five_prime_UTR
GGAGATGAGATTAGCAACTG+AGG 0.650971 2:+6598245 MsG0280006809.01.T01:CDS
AGACCAAAAGAGTCTAGTCG+AGG 0.653750 2:+6598224 MsG0280006809.01.T01:CDS
CCGGGATTCAGACACAGACA+CGG 0.662072 2:+6595539 MsG0280006809.01.T01:five_prime_UTR
TGAGTTGGAGAAGGAGATTG+CGG 0.667995 2:+6596314 MsG0280006809.01.T01:CDS
GACGACGTAATCATCAACAC+CGG 0.724253 2:+6595896 MsG0280006809.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAATAAATAAAAGAA+AGG - Chr2:6597885-6597904 None:intergenic 10.0%
!! ATATTAGAATAACTTAAATA+AGG - Chr2:6598118-6598137 None:intergenic 10.0%
!! CAATAAATAAATAAAAGAAA+GGG - Chr2:6597884-6597903 None:intergenic 10.0%
!! TATTAGAATAACTTAAATAA+GGG - Chr2:6598117-6598136 None:intergenic 10.0%
!!! ATATCTCAATTTTTTAAATT+AGG + Chr2:6595713-6595732 MsG0280006809.01.T01:intron 10.0%
!!! TATCTCAATTTTTTAAATTA+GGG + Chr2:6595714-6595733 MsG0280006809.01.T01:intron 10.0%
!! ATATATATGAATACATTCAT+AGG + Chr2:6597548-6597567 MsG0280006809.01.T01:intron 15.0%
!! TAACATTGTTTATAGAATTA+GGG - Chr2:6595679-6595698 None:intergenic 15.0%
!! TATTCATATATATGATTACT+TGG - Chr2:6597541-6597560 None:intergenic 15.0%
!! TTAACATTGTTTATAGAATT+AGG - Chr2:6595680-6595699 None:intergenic 15.0%
!!! ATATCATTTTTCTATTGAAA+TGG + Chr2:6596855-6596874 MsG0280006809.01.T01:intron 15.0%
!!! TATCATTTTTCTATTGAAAT+GGG + Chr2:6596856-6596875 MsG0280006809.01.T01:intron 15.0%
!! AGAGAAATAGTTAAACAATT+AGG - Chr2:6596540-6596559 None:intergenic 20.0%
!! GTTAAATTAAGTCTATAGAA+TGG + Chr2:6597307-6597326 MsG0280006809.01.T01:intron 20.0%
!! TTCTATAGACTTAATTTAAC+AGG - Chr2:6597307-6597326 None:intergenic 20.0%
!!! ATAAATGTAATTTTGTGCAT+TGG - Chr2:6595651-6595670 None:intergenic 20.0%
!!! ATGTTCACATTTTATTACAA+AGG - Chr2:6597758-6597777 None:intergenic 20.0%
!!! CAGAGAATTTAAAACATATA+TGG + Chr2:6597255-6597274 MsG0280006809.01.T01:intron 20.0%
!!! GTTTTTAGAGTGTTAAAAAT+TGG + Chr2:6597493-6597512 MsG0280006809.01.T01:intron 20.0%
!!! TAAATGTAATTTTGTGCATT+GGG - Chr2:6595650-6595669 None:intergenic 20.0%
!!! TATAAGCTATTTTTTAGCAT+AGG + Chr2:6596658-6596677 MsG0280006809.01.T01:intron 20.0%
!!! TTCCAAATGCATTTTAAATT+CGG - Chr2:6597395-6597414 None:intergenic 20.0%
!!! TTTTAGTTTATTGCTTGAAA+TGG + Chr2:6597609-6597628 MsG0280006809.01.T01:intron 20.0%
!!! TTTTATTACAAAGGCAAATT+AGG - Chr2:6597749-6597768 None:intergenic 20.0%
! AGAATAACTTAAATAAGGGA+TGG - Chr2:6598113-6598132 None:intergenic 25.0%
! AGGAGAAGAAAAAAATGAAA+TGG - Chr2:6598512-6598531 None:intergenic 25.0%
! ATATATTGTCTAGTTAGAAC+AGG - Chr2:6595773-6595792 None:intergenic 25.0%
! ATTAGACCGAGTTATATTTA+CGG - Chr2:6597072-6597091 None:intergenic 25.0%
! CAAAGAGAAATAACTAAAGA+TGG - Chr2:6597693-6597712 None:intergenic 25.0%
! CAATGAAAAACAGAAAATAC+CGG - Chr2:6598042-6598061 None:intergenic 25.0%
! TAAATAAAAGAAAGGGAAAC+TGG - Chr2:6597877-6597896 None:intergenic 25.0%
! TAACAGGCTATTCATAATTA+AGG - Chr2:6597291-6597310 None:intergenic 25.0%
! TATATTGTCTAGTTAGAACA+GGG - Chr2:6595772-6595791 None:intergenic 25.0%
! TTAAAATGCATTTGGAAGAT+GGG + Chr2:6597398-6597417 MsG0280006809.01.T01:intron 25.0%
! TTATGAATACTAGTTGAGAA+GGG + Chr2:6597346-6597365 MsG0280006809.01.T01:intron 25.0%
!! AGTGTTAAAAATTGGTGTTT+GGG + Chr2:6597501-6597520 MsG0280006809.01.T01:intron 25.0%
!! GTGATTGATGTTTTCTTTTA+TGG - Chr2:6597131-6597150 None:intergenic 25.0%
!! TATGTTTTCATATCGTGATT+AGG + Chr2:6598363-6598382 MsG0280006809.01.T01:three_prime_UTR 25.0%
!! TTTAAAATGCATTTGGAAGA+TGG + Chr2:6597397-6597416 MsG0280006809.01.T01:intron 25.0%
!!! AATTCTCTATTTTAGTCTTC+CGG - Chr2:6597575-6597594 None:intergenic 25.0%
!!! CTCTTTGAAGATTTTTTAGT+CGG + Chr2:6597706-6597725 MsG0280006809.01.T01:intron 25.0%
!!! TTCTTTTGAAGCTTTTTCAA+TGG - Chr2:6595958-6595977 None:intergenic 25.0%
AAAAAAACTAAGATCCTGTG+TGG + Chr2:6597009-6597028 MsG0280006809.01.T01:intron 30.0%
AAAATGATCGAATGAGACAT+TGG - Chr2:6597831-6597850 None:intergenic 30.0%
AACAATTAGGCATCACAAAT+AGG - Chr2:6596527-6596546 None:intergenic 30.0%
AACCACAAGATGATTTGAAA+AGG - Chr2:6597476-6597495 None:intergenic 30.0%
AATAAGTTGCTTATCCTAAC+AGG - Chr2:6596603-6596622 None:intergenic 30.0%
AATATCATGATGGCAAATTC+TGG + Chr2:6598080-6598099 MsG0280006809.01.T01:intron 30.0%
ACTTATTTGAGCTTATCTAC+CGG - Chr2:6596782-6596801 None:intergenic 30.0%
ATAAGTTGCTTATCCTAACA+GGG - Chr2:6596602-6596621 None:intergenic 30.0%
ATGAACTGTCAATATCATGA+TGG + Chr2:6598070-6598089 MsG0280006809.01.T01:intron 30.0%
ATTGAAGTGAAATTAGGGTT+TGG - Chr2:6595742-6595761 None:intergenic 30.0%
GAGACTTTCAATCTAGTTAA+TGG - Chr2:6598326-6598345 None:intergenic 30.0%
GTCGAATTGAAGTGAAATTA+GGG - Chr2:6595747-6595766 None:intergenic 30.0%
GTTATGAATACTAGTTGAGA+AGG + Chr2:6597345-6597364 MsG0280006809.01.T01:intron 30.0%
TATGAATACATTCATAGGTC+CGG + Chr2:6597553-6597572 MsG0280006809.01.T01:intron 30.0%
TCAACTAGTATTCATAACTG+AGG - Chr2:6597343-6597362 None:intergenic 30.0%
TGTCGAATTGAAGTGAAATT+AGG - Chr2:6595748-6595767 None:intergenic 30.0%
TGTTACACAACAAAATTCAG+AGG - Chr2:6598468-6598487 None:intergenic 30.0%
TTTCTATTGAAATGGGATTC+TGG + Chr2:6596863-6596882 MsG0280006809.01.T01:intron 30.0%
! AAATGGTTATGCAATTTGCT+AGG + Chr2:6597626-6597645 MsG0280006809.01.T01:intron 30.0%
! AAATTGGAACGAACCTTTTT+CGG - Chr2:6595588-6595607 None:intergenic 30.0%
! AACCTTTTCAAATCATCTTG+TGG + Chr2:6597471-6597490 MsG0280006809.01.T01:intron 30.0%
! CTTTTCAGAATGTAACAAGT+GGG - Chr2:6597804-6597823 None:intergenic 30.0%
! GACCGAATTTAAAATGCATT+TGG + Chr2:6597390-6597409 MsG0280006809.01.T01:intron 30.0%
! GAGTGTTAAAAATTGGTGTT+TGG + Chr2:6597500-6597519 MsG0280006809.01.T01:intron 30.0%
! TAGCTTACAAAGCAGTATTT+TGG + Chr2:6597427-6597446 MsG0280006809.01.T01:intron 30.0%
! TCTTTTCAGAATGTAACAAG+TGG - Chr2:6597805-6597824 None:intergenic 30.0%
! TTTTCGCCGTAAATATAACT+CGG + Chr2:6597063-6597082 MsG0280006809.01.T01:intron 30.0%
!! ACAAGTTTTGTGAGACTATT+TGG - Chr2:6596758-6596777 None:intergenic 30.0%
!! CAAGTTTTGTGAGACTATTT+GGG - Chr2:6596757-6596776 None:intergenic 30.0%
!! CATCTTTGCTTTTCAGAATT+GGG - Chr2:6597229-6597248 None:intergenic 30.0%
!! CGGTATTTTCTGTTTTTCAT+TGG + Chr2:6598040-6598059 MsG0280006809.01.T01:intron 30.0%
!! GTAAACACTTGCATTTTGAT+TGG + Chr2:6598437-6598456 MsG0280006809.01.T01:three_prime_UTR 30.0%
!! GTCATATGAACTTGTTTTTC+CGG + Chr2:6598020-6598039 MsG0280006809.01.T01:intron 30.0%
!! TCATCTTTGCTTTTCAGAAT+TGG - Chr2:6597230-6597249 None:intergenic 30.0%
!!! TGTCTGCATTTTTTAGTTGA+AGG + Chr2:6597180-6597199 MsG0280006809.01.T01:intron 30.0%
!!! TTTTGAAGCTTTTTCAATGG+CGG - Chr2:6595955-6595974 None:intergenic 30.0%
!!! TTTTTTAGCATAGGCTATCT+TGG + Chr2:6596667-6596686 MsG0280006809.01.T01:intron 30.0%
AAAGGCAAATTAGGAAGCTA+AGG - Chr2:6597740-6597759 None:intergenic 35.0%
AAGCAGAGAGTAAAGGAAAT+TGG - Chr2:6595604-6595623 None:intergenic 35.0%
AAGTTTAGAGAATGGCAGAA+CGG + Chr2:6596819-6596838 MsG0280006809.01.T01:intron 35.0%
AGCTGAATCATTTGTGTTCA+AGG + Chr2:6597953-6597972 MsG0280006809.01.T01:intron 35.0%
ATCCACCTGCAAGAAAATTA+AGG - Chr2:6598181-6598200 None:intergenic 35.0%
ATCGCTTTACTCTTCAAAAG+GGG - Chr2:6596084-6596103 None:intergenic 35.0%
CTCAAATAAGTCAATCCAAC+AGG + Chr2:6596791-6596810 MsG0280006809.01.T01:intron 35.0%
GAATATGAAGCAGAGAGTAA+AGG - Chr2:6595611-6595630 None:intergenic 35.0%
GATCGCTTTACTCTTCAAAA+GGG - Chr2:6596085-6596104 None:intergenic 35.0%
GATCGTTGAAGCTAATGTTA+GGG + Chr2:6596101-6596120 MsG0280006809.01.T01:five_prime_UTR 35.0%
TATTGACATCAACGTGTACA+TGG - Chr2:6598147-6598166 None:intergenic 35.0%
TGACTAAAACTACATCCAAC+AGG - Chr2:6597923-6597942 None:intergenic 35.0%
TGAGGATTTGAAGAAACAGT+TGG + Chr2:6596191-6596210 MsG0280006809.01.T01:CDS 35.0%
TGAGTTGCAGAATACAATAG+AGG + Chr2:6598200-6598219 MsG0280006809.01.T01:CDS 35.0%
TGATTTCAGTTGAACTTGGA+TGG - Chr2:6597107-6597126 None:intergenic 35.0%
! AATTGGAACGAACCTTTTTC+GGG - Chr2:6595587-6595606 None:intergenic 35.0%
! TACTAGTTGAGAAGGGATTT+TGG + Chr2:6597353-6597372 MsG0280006809.01.T01:intron 35.0%
! TGGTTGATTTCAGTTGAACT+TGG - Chr2:6597111-6597130 None:intergenic 35.0%
!! GTTTACAAAGTTCTAAGCAC+TGG - Chr2:6598423-6598442 None:intergenic 35.0%
!!! AACATTTTCTAGAACCACAC+AGG - Chr2:6597026-6597045 None:intergenic 35.0%
AGTTTAGAGAATGGCAGAAC+GGG + Chr2:6596820-6596839 MsG0280006809.01.T01:intron 40.0%
CACCTGCAAGAAAATTAAGG+AGG - Chr2:6598178-6598197 None:intergenic 40.0%
CATGATGGCAAATTCTGGAT+AGG + Chr2:6598085-6598104 MsG0280006809.01.T01:intron 40.0%
CGATCGCTTTACTCTTCAAA+AGG - Chr2:6596086-6596105 None:intergenic 40.0%
CGATCGTTGAAGCTAATGTT+AGG + Chr2:6596100-6596119 MsG0280006809.01.T01:five_prime_UTR 40.0%
CTGCCATTCTCTAAACTTCA+GGG - Chr2:6596817-6596836 None:intergenic 40.0%
GATCAAGAAATCGAGATGCA+GGG + Chr2:6595806-6595825 MsG0280006809.01.T01:intron 40.0%
GCAAATTAGGAAGCTAAGGA+TGG - Chr2:6597736-6597755 None:intergenic 40.0%
GGATTTGAAGAAACAGTTGG+AGG + Chr2:6596194-6596213 MsG0280006809.01.T01:CDS 40.0%
GTCTTCATCTTTGTCTACCT+CGG - Chr2:6595998-6596017 None:intergenic 40.0%
TAAGGTTGAGAGACGACATA+AGG + Chr2:6596221-6596240 MsG0280006809.01.T01:CDS 40.0%
TAGTCTCACAAAACTTGTGC+CGG + Chr2:6596760-6596779 MsG0280006809.01.T01:intron 40.0%
TCTGCCATTCTCTAAACTTC+AGG - Chr2:6596818-6596837 None:intergenic 40.0%
TGAAGCTAATGTTAGGGAGA+AGG + Chr2:6596107-6596126 MsG0280006809.01.T01:five_prime_UTR 40.0%
TGATCAAGAAATCGAGATGC+AGG + Chr2:6595805-6595824 MsG0280006809.01.T01:intron 40.0%
TTCTTAGAAATGTGCAACGC+AGG + Chr2:6596482-6596501 MsG0280006809.01.T01:intron 40.0%
TTGAACTTGGATGGCTATTG+AGG - Chr2:6597098-6597117 None:intergenic 40.0%
! CTCCTCCTTAATTTTCTTGC+AGG + Chr2:6598173-6598192 MsG0280006809.01.T01:intron 40.0%
! CTCCTTAATTTTCTTGCAGG+TGG + Chr2:6598176-6598195 MsG0280006809.01.T01:intron 40.0%
! CTTTTGTTGCAAGTGGTATG+TGG + Chr2:6596399-6596418 MsG0280006809.01.T01:intron 40.0%
!! AACAAGTGGGTTGTTGACAT+CGG - Chr2:6597791-6597810 None:intergenic 40.0%
!! ATTGGAACGAACCTTTTTCG+GGG - Chr2:6595586-6595605 None:intergenic 40.0%
!! GTTTTCGCTTTTGTTGCAAG+TGG + Chr2:6596392-6596411 MsG0280006809.01.T01:CDS 40.0%
!! TACTGCTGGTTCGAGATTAT+TGG + Chr2:6596353-6596372 MsG0280006809.01.T01:CDS 40.0%
!!! GCAAAAGGTTTTGAGTGAGT+TGG + Chr2:6596299-6596318 MsG0280006809.01.T01:CDS 40.0%
AATGAATCGACAGATTGCGC+AGG + Chr2:6596155-6596174 MsG0280006809.01.T01:exon 45.0%
AGACCAAAAGAGTCTAGTCG+AGG + Chr2:6598224-6598243 MsG0280006809.01.T01:CDS 45.0%
AGGCCCTGAAGTTTAGAGAA+TGG + Chr2:6596811-6596830 MsG0280006809.01.T01:intron 45.0%
ATGATTACGTCGTCGATCGA+AGG - Chr2:6595890-6595909 None:intergenic 45.0%
CAACTGAGGAGCTCAAGAAT+GGG + Chr2:6598259-6598278 MsG0280006809.01.T01:CDS 45.0%
CTTATCCTAACAGGGCAACA+AGG - Chr2:6596594-6596613 None:intergenic 45.0%
GAAACAGTTGGAGGAGAGTA+AGG + Chr2:6596203-6596222 MsG0280006809.01.T01:CDS 45.0%
GACGACGTAATCATCAACAC+CGG + Chr2:6595896-6595915 MsG0280006809.01.T01:five_prime_UTR 45.0%
GGAGATGAGATTAGCAACTG+AGG + Chr2:6598245-6598264 MsG0280006809.01.T01:CDS 45.0%
GTAGCAGCAAACTACGCATT+CGG + Chr2:6595863-6595882 MsG0280006809.01.T01:five_prime_UTR 45.0%
GTTCGAGATTATTGGAGCTG+AGG + Chr2:6596361-6596380 MsG0280006809.01.T01:CDS 45.0%
GTTGTAGTGTGCATACCTGT+TGG + Chr2:6597905-6597924 MsG0280006809.01.T01:intron 45.0%
TTGGATGCTGAGAATACTGC+TGG + Chr2:6596339-6596358 MsG0280006809.01.T01:CDS 45.0%
! ACCTTTTGCGTCTCAGATCT+CGG - Chr2:6596288-6596307 None:intergenic 45.0%
! ACGACATAAGGAAGAGTGTG+AGG + Chr2:6596233-6596252 MsG0280006809.01.T01:CDS 45.0%
! AGGAAGAGTGTGAGGCTATT+AGG + Chr2:6596241-6596260 MsG0280006809.01.T01:CDS 45.0%
! GTTCACATCTTTTGTCTCCG+AGG + Chr2:6595978-6595997 MsG0280006809.01.T01:five_prime_UTR 45.0%
! TCTCCTCGACTAGACTCTTT+TGG - Chr2:6598230-6598249 None:intergenic 45.0%
! TGAGTTGGAGAAGGAGATTG+CGG + Chr2:6596314-6596333 MsG0280006809.01.T01:CDS 45.0%
! TTGTTGTTCGGGTTAGAAGC+CGG - Chr2:6595918-6595937 None:intergenic 45.0%
!! AATGCGTAGTTTGCTGCTAC+TGG - Chr2:6595863-6595882 None:intergenic 45.0%
!!! GAGCGGTTCAGTTTTGGTTA+AGG - Chr2:6595516-6595535 None:intergenic 45.0%
!!! GGTTTTGAGTGAGTTGGAGA+AGG + Chr2:6596305-6596324 MsG0280006809.01.T01:CDS 45.0%
AAAACTGAACCGCTCTCACC+GGG + Chr2:6595521-6595540 MsG0280006809.01.T01:five_prime_UTR 50.0%
AATGGGATGGAAGACGCAAG+TGG + Chr2:6598276-6598295 MsG0280006809.01.T01:CDS 50.0%
ACCCGAACAACAACAACTCG+AGG + Chr2:6595925-6595944 MsG0280006809.01.T01:five_prime_UTR 50.0%
ATGGGATGGAAGACGCAAGT+GGG + Chr2:6598277-6598296 MsG0280006809.01.T01:CDS 50.0%
CAAAACTGAACCGCTCTCAC+CGG + Chr2:6595520-6595539 MsG0280006809.01.T01:five_prime_UTR 50.0%
CTCTAAACTTCAGGGCCTGT+TGG - Chr2:6596809-6596828 None:intergenic 50.0%
GCAACTGAGGAGCTCAAGAA+TGG + Chr2:6598258-6598277 MsG0280006809.01.T01:CDS 50.0%
GCAGGCGCAGATTGATATTG+AGG + Chr2:6596173-6596192 MsG0280006809.01.T01:CDS 50.0%
TGAGGAGCTCAAGAATGGGA+TGG + Chr2:6598263-6598282 MsG0280006809.01.T01:CDS 50.0%
! CGCCTCGAGTTGTTGTTGTT+CGG - Chr2:6595930-6595949 None:intergenic 50.0%
! GCCTCGAGTTGTTGTTGTTC+GGG - Chr2:6595929-6595948 None:intergenic 50.0%
! TTTTGCGTCTCAGATCTCGG+CGG - Chr2:6596285-6596304 None:intergenic 50.0%
!! CTTAGCCTTGTTGCCCTGTT+AGG + Chr2:6596586-6596605 MsG0280006809.01.T01:intron 50.0%
CCGGGATTCAGACACAGACA+CGG + Chr2:6595539-6595558 MsG0280006809.01.T01:five_prime_UTR 55.0%
CCGTGTCTGTGTCTGAATCC+CGG - Chr2:6595542-6595561 None:intergenic 55.0%
GATGCAGGGAAGAGTGAGGA+AGG + Chr2:6595820-6595839 MsG0280006809.01.T01:five_prime_UTR 55.0%
TCGAGATGCAGGGAAGAGTG+AGG + Chr2:6595816-6595835 MsG0280006809.01.T01:five_prime_UTR 55.0%
TGGGATGGAAGACGCAAGTG+GGG + Chr2:6598278-6598297 MsG0280006809.01.T01:CDS 55.0%
TGTCTGAATCCCGGTGAGAG+CGG - Chr2:6595533-6595552 None:intergenic 55.0%
! CGGTGAGAGCGGTTCAGTTT+TGG - Chr2:6595522-6595541 None:intergenic 55.0%
! GCCGAGATCTGAGACGCAAA+AGG + Chr2:6596284-6596303 MsG0280006809.01.T01:CDS 55.0%
!! TGCTACTGGTTCACCACGAG+CGG - Chr2:6595849-6595868 None:intergenic 55.0%
!!! CTTTTTCGGGGATGCGTGTG+CGG - Chr2:6595574-6595593 None:intergenic 55.0%
CGCACACGCATCCCCGAAAA+AGG + Chr2:6595572-6595591 MsG0280006809.01.T01:five_prime_UTR 60.0%
GGAGAAGGAGATTGCGGCGT+TGG + Chr2:6596320-6596339 MsG0280006809.01.T01:CDS 60.0%
GGATGGAAGACGCAAGTGGG+GGG + Chr2:6598280-6598299 MsG0280006809.01.T01:CDS 60.0%
GGGATGGAAGACGCAAGTGG+GGG + Chr2:6598279-6598298 MsG0280006809.01.T01:CDS 60.0%
GTGAGGAAGGTTTCCGCTCG+TGG + Chr2:6595833-6595852 MsG0280006809.01.T01:five_prime_UTR 60.0%
TTTCGGGGATGCGTGTGCGG+TGG - Chr2:6595571-6595590 None:intergenic 65.0%
CGGGGATGCGTGTGCGGTGG+TGG - Chr2:6595568-6595587 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6595493 6598544 6595493 ID=MsG0280006809.01;Name=MsG0280006809.01
Chr2 mRNA 6595493 6598544 6595493 ID=MsG0280006809.01.T01;Parent=MsG0280006809.01;Name=MsG0280006809.01.T01;_AED=0.44;_eAED=0.44;_QI=444|1|1|1|0.5|0.33|3|215|130
Chr2 exon 6595493 6595593 6595493 ID=MsG0280006809.01.T01:exon:2770;Parent=MsG0280006809.01.T01
Chr2 exon 6595813 6596413 6595813 ID=MsG0280006809.01.T01:exon:2771;Parent=MsG0280006809.01.T01
Chr2 exon 6598195 6598544 6598195 ID=MsG0280006809.01.T01:exon:2772;Parent=MsG0280006809.01.T01
Chr2 five_prime_UTR 6595493 6595593 6595493 ID=MsG0280006809.01.T01:five_prime_utr;Parent=MsG0280006809.01.T01
Chr2 five_prime_UTR 6595813 6596155 6595813 ID=MsG0280006809.01.T01:five_prime_utr;Parent=MsG0280006809.01.T01
Chr2 CDS 6596156 6596413 6596156 ID=MsG0280006809.01.T01:cds;Parent=MsG0280006809.01.T01
Chr2 CDS 6598195 6598329 6598195 ID=MsG0280006809.01.T01:cds;Parent=MsG0280006809.01.T01
Chr2 three_prime_UTR 6598330 6598544 6598330 ID=MsG0280006809.01.T01:three_prime_utr;Parent=MsG0280006809.01.T01
Gene Sequence

>MsG0280006809.01.T01

ATGAATCGACAGATTGCGCAGGCGCAGATTGATATTGAGGATTTGAAGAAACAGTTGGAGGAGAGTAAGGTTGAGAGACGACATAAGGAAGAGTGTGAGGCTATTAGGAAGTTGATTGCTGTGCAGCCGCCGAGATCTGAGACGCAAAAGGTTTTGAGTGAGTTGGAGAAGGAGATTGCGGCGTTGGATGCTGAGAATACTGCTGGTTCGAGATTATTGGAGCTGAGGAAGAAGCAGTTTTCGCTTTTGTTGCAAGTGGTGGATGAGTTGCAGAATACAATAGAGGAAGACCAAAAGAGTCTAGTCGAGGAGATGAGATTAGCAACTGAGGAGCTCAAGAATGGGATGGAAGACGCAAGTGGGGGGTCAGATGCAATGACAGTTGACCATTAA
Protein sequence

>MsG0280006809.01.T01

MNRQIAQAQIDIEDLKKQLEESKVERRHKEECEAIRKLIAVQPPRSETQKVLSELEKEIAALDAENTAGSRLLELRKKQFSLLLQVVDELQNTIEEDQKSLVEEMRLATEELKNGMEDASGGSDAMTVDH*