AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000339.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000339.01.T01 MTR_1g017770 97.349 415 11 0 1 415 1 415 0.0 817
MsG0180000339.01.T01 MTR_5g015210 63.402 388 136 4 28 415 51 432 4.24e-174 500
MsG0180000339.01.T01 MTR_1g017780 98.089 157 3 0 416 572 5 161 3.20e-109 323
MsG0180000339.01.T01 MTR_4g116410 92.357 157 11 1 416 572 5 160 3.59e-90 275
MsG0180000339.01.T01 MTR_8g076830 92.994 157 10 1 416 572 5 160 6.48e-90 274
MsG0180000339.01.T01 MTR_8g092870 28.960 404 235 12 45 413 10 396 1.44e-33 132
MsG0180000339.01.T01 MTR_4g085720 26.382 398 259 7 36 413 5 388 7.05e-31 125
MsG0180000339.01.T01 MTR_5g077510 27.628 409 242 9 45 419 35 423 1.23e-29 122
MsG0180000339.01.T01 MTR_4g485520 28.198 344 221 9 45 372 105 438 2.56e-27 115
MsG0180000339.01.T01 MTR_3g065080 26.406 409 258 10 31 413 26 417 4.28e-27 114
MsG0180000339.01.T01 MTR_4g485520 28.488 344 220 10 45 372 273 606 6.80e-27 115
MsG0180000339.01.T01 MTR_7g106340 27.901 405 244 11 44 413 7 398 8.84e-27 113
MsG0180000339.01.T01 MTR_4g063800 26.166 386 257 9 45 415 255 627 1.21e-26 115
MsG0180000339.01.T01 MTR_6g071340 25.990 404 271 9 45 423 5 405 3.86e-26 111
MsG0180000339.01.T01 MTR_1g094215 27.273 363 231 9 45 385 64 415 2.06e-25 109
MsG0180000339.01.T01 MTR_3g095730 27.569 399 245 13 45 413 13 397 2.66e-25 108
MsG0180000339.01.T01 MTR_3g096370 29.262 393 244 11 45 413 10 392 3.93e-25 108
MsG0180000339.01.T01 MTR_7g078330 28.571 280 180 7 45 314 274 543 4.27e-25 110
MsG0180000339.01.T01 MTR_1g094215 27.273 363 231 9 45 385 247 598 7.62e-25 109
MsG0180000339.01.T01 MTR_5g048050 25.990 404 271 9 45 423 25 425 1.23e-24 107
MsG0180000339.01.T01 MTR_2g062480 65.476 84 9 1 130 213 50 113 1.41e-23 96.7
MsG0180000339.01.T01 MTR_7g059405 28.060 335 218 10 45 367 264 587 3.35e-22 101
MsG0180000339.01.T01 MTR_2g018010 27.778 306 194 6 28 312 274 573 2.32e-21 99.0
MsG0180000339.01.T01 MTR_2g087350 27.621 391 265 11 39 416 1 386 1.93e-19 91.3
MsG0180000339.01.T01 MTR_7g116600 31.330 233 143 6 46 264 79 308 9.04e-19 89.7
MsG0180000339.01.T01 MTR_7g053260 28.755 233 148 5 46 264 79 307 2.89e-18 88.2
MsG0180000339.01.T01 MTR_1g056910 27.628 409 244 18 39 415 1 389 8.47e-18 86.3
MsG0180000339.01.T01 MTR_5g083030 25.291 344 208 11 44 352 292 621 1.47e-17 86.7
MsG0180000339.01.T01 MTR_1g056870 26.950 423 251 17 41 415 4 416 2.06e-17 85.5
MsG0180000339.01.T01 MTR_4g107010 28.526 312 188 9 46 334 281 580 3.50e-17 85.9
MsG0180000339.01.T01 MTR_1g056880 26.905 420 255 14 41 415 4 416 3.77e-17 84.3
MsG0180000339.01.T01 MTR_3g078160 26.801 347 209 10 22 341 254 582 7.96e-17 84.3
MsG0180000339.01.T01 MTR_3g078160 26.801 347 209 10 22 341 254 582 1.07e-16 84.0
MsG0180000339.01.T01 MTR_4g028960 29.956 227 115 8 45 237 280 496 2.06e-16 83.2
MsG0180000339.01.T01 MTR_1g056840 25.598 418 237 13 41 415 4 390 6.19e-16 80.5
MsG0180000339.01.T01 MTR_5g034440 29.276 304 187 9 49 333 284 578 1.08e-15 80.9
MsG0180000339.01.T01 MTR_2g011140 26.171 363 229 12 51 396 21 361 3.31e-15 78.2
MsG0180000339.01.T01 MTR_4g091880 26.829 328 192 9 44 364 4 290 4.21e-15 77.4
MsG0180000339.01.T01 MTR_3g085610 50.000 66 33 0 46 111 281 346 1.74e-14 77.0
MsG0180000339.01.T01 MTR_3g078160 28.322 286 176 7 22 285 254 532 4.50e-14 75.5
MsG0180000339.01.T01 MTR_4g091880 26.347 334 214 10 44 364 4 318 1.10e-13 73.2
MsG0180000339.01.T01 MTR_1g093965 47.692 65 34 0 58 122 1 65 3.68e-13 68.9
MsG0180000339.01.T01 MTR_1g093995 47.692 65 34 0 58 122 1 65 4.62e-13 68.6
MsG0180000339.01.T01 MTR_1g069845 46.970 66 35 0 46 111 125 190 4.72e-13 72.4
MsG0180000339.01.T01 MTR_1g079450 25.547 274 179 9 45 303 63 326 6.47e-13 71.2
MsG0180000339.01.T01 MTR_1g069845 46.970 66 35 0 46 111 246 311 7.57e-13 72.0
MsG0180000339.01.T01 MTR_1g069845 46.970 66 35 0 46 111 242 307 8.16e-13 71.6
MsG0180000339.01.T01 MTR_3g466220 47.761 67 35 0 45 111 212 278 1.38e-12 71.2
MsG0180000339.01.T01 MTR_3g466220 47.761 67 35 0 45 111 233 299 1.41e-12 71.2
MsG0180000339.01.T01 MTR_4g051515 47.222 72 35 2 44 112 5 76 8.58e-12 67.8
MsG0180000339.01.T01 MTR_7g097020 45.455 66 35 1 46 111 243 307 1.57e-11 67.8
MsG0180000339.01.T01 MTR_8g077205 45.455 66 36 0 46 111 276 341 1.59e-11 67.8
MsG0180000339.01.T01 MTR_8g077205 45.455 66 36 0 46 111 164 229 1.62e-11 67.4
MsG0180000339.01.T01 MTR_3g115670 28.033 239 133 12 42 263 27 243 1.62e-11 67.8
MsG0180000339.01.T01 MTR_8g080280 45.455 66 36 0 46 111 283 348 1.81e-11 67.4
MsG0180000339.01.T01 MTR_8g027140 32.143 140 85 3 49 178 263 402 9.49e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000339.01.T01 AT3G49810 62.371 388 140 4 28 415 48 429 1.08e-170 492
MsG0180000339.01.T01 AT5G65920 58.897 399 156 5 19 415 33 425 8.70e-162 469
MsG0180000339.01.T01 AT5G65920 58.897 399 156 5 19 415 33 425 8.70e-162 469
MsG0180000339.01.T01 AT5G23740 87.261 157 18 1 416 572 5 159 1.02e-84 261
MsG0180000339.01.T01 AT3G48930 85.987 157 21 1 416 572 5 160 6.32e-83 256
MsG0180000339.01.T01 AT4G30800 85.987 157 20 1 416 572 5 159 1.32e-80 250
MsG0180000339.01.T01 AT3G19380 32.632 380 239 10 36 400 5 382 2.62e-40 152
MsG0180000339.01.T01 AT1G49780 31.139 395 253 8 36 413 5 397 1.42e-35 139
MsG0180000339.01.T01 AT3G18710 27.792 403 253 13 37 413 4 394 4.89e-32 128
MsG0180000339.01.T01 AT5G64660 27.725 422 219 15 45 413 10 398 4.62e-30 123
MsG0180000339.01.T01 AT3G54850 28.235 340 217 8 45 368 248 576 1.09e-29 124
MsG0180000339.01.T01 AT1G23030 26.741 359 234 11 26 366 218 565 3.58e-27 116
MsG0180000339.01.T01 AT2G35930 26.904 394 260 10 39 413 6 390 4.91e-27 114
MsG0180000339.01.T01 AT1G71020 27.119 354 230 9 45 380 95 438 2.65e-26 112
MsG0180000339.01.T01 AT5G37490 25.510 392 265 7 45 417 31 414 3.65e-26 111
MsG0180000339.01.T01 AT1G66160 26.494 385 253 11 45 413 33 403 5.95e-26 111
MsG0180000339.01.T01 AT1G71020 27.273 341 220 9 45 367 243 573 7.35e-26 112
MsG0180000339.01.T01 AT3G46510 25.581 387 258 9 45 415 256 628 2.44e-25 111
MsG0180000339.01.T01 AT5G42340 29.675 246 162 5 45 282 290 532 8.92e-25 109
MsG0180000339.01.T01 AT2G28830 27.273 308 198 4 46 335 185 484 4.29e-24 107
MsG0180000339.01.T01 AT3G52450 25.952 420 260 12 39 413 1 414 1.15e-21 98.2
MsG0180000339.01.T01 AT5G09800 26.196 397 251 16 42 413 8 387 1.41e-21 97.8
MsG0180000339.01.T01 AT1G29340 27.055 292 188 6 40 312 300 585 1.01e-20 97.1
MsG0180000339.01.T01 AT5G01830 30.244 205 125 4 44 234 273 473 5.51e-17 85.1
MsG0180000339.01.T01 AT1G66160 24.156 385 246 12 45 413 33 387 1.09e-16 82.8
MsG0180000339.01.T01 AT4G21350 25.076 331 229 7 44 367 4 322 2.57e-16 81.3
MsG0180000339.01.T01 AT3G07360 28.146 302 187 10 46 331 75 362 2.92e-16 82.0
MsG0180000339.01.T01 AT1G67530 54.545 66 30 0 46 111 273 338 2.89e-15 79.3
MsG0180000339.01.T01 AT1G67530 54.545 66 30 0 46 111 273 338 2.96e-15 79.7
MsG0180000339.01.T01 AT1G67530 54.545 66 30 0 46 111 273 338 2.96e-15 79.7
MsG0180000339.01.T01 AT1G67530 54.545 66 30 0 46 111 273 338 2.96e-15 79.7
MsG0180000339.01.T01 AT1G60190 28.214 280 173 10 51 310 284 555 2.75e-14 76.6
MsG0180000339.01.T01 AT1G24330 51.515 66 32 0 46 111 276 341 7.89e-14 75.1
MsG0180000339.01.T01 AT1G24330 51.515 66 32 0 46 111 276 341 7.89e-14 75.1
MsG0180000339.01.T01 AT3G11840 50.725 69 32 2 44 111 9 76 1.78e-13 73.2
MsG0180000339.01.T01 AT1G27910 51.515 66 32 0 46 111 280 345 1.89e-13 73.9
MsG0180000339.01.T01 AT1G10560 24.425 348 205 12 49 348 292 629 4.12e-13 72.8
MsG0180000339.01.T01 AT2G23140 47.619 63 33 0 49 111 237 299 1.38e-12 71.2
MsG0180000339.01.T01 AT2G23140 47.619 63 33 0 49 111 234 296 1.41e-12 71.2
MsG0180000339.01.T01 AT2G23140 47.619 63 33 0 49 111 234 296 1.41e-12 71.2
MsG0180000339.01.T01 AT2G23140 47.619 63 33 0 49 111 45 107 1.49e-12 70.9
MsG0180000339.01.T01 AT2G23140 47.619 63 33 0 49 111 45 107 1.49e-12 70.9
MsG0180000339.01.T01 AT3G02840 23.954 263 184 7 163 412 92 351 3.05e-12 68.9
MsG0180000339.01.T01 AT3G54790 38.667 75 46 0 45 119 202 276 3.54e-12 69.7
MsG0180000339.01.T01 AT3G54790 38.667 75 46 0 45 119 238 312 3.74e-12 69.7
MsG0180000339.01.T01 AT3G54790 38.667 75 46 0 45 119 238 312 3.74e-12 69.7
MsG0180000339.01.T01 AT5G65500 41.096 73 43 0 43 115 721 793 3.63e-11 66.6
MsG0180000339.01.T01 AT5G65500 41.096 73 43 0 43 115 713 785 3.71e-11 66.6

Find 124 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACTCGTTATTCAAATT+TGG 0.155411 1:+4644001 None:intergenic
GACCAAGTGAAAACCATTTA+AGG 0.159560 1:+4644707 None:intergenic
TATCGGTATCATTGTGAATT+TGG 0.172886 1:-4644359 MsG0180000339.01.T01:CDS
CAGTAAAACATTTGAAATTA+AGG 0.230762 1:+4641028 None:intergenic
GGTCACGATCTCATCAAATT+TGG 0.236368 1:-4640996 MsG0180000339.01.T01:three_prime_UTR
CATCCAAATGGGATATTAAT+TGG 0.260923 1:-4644118 MsG0180000339.01.T01:CDS
TGTTTCAAGTTTGAGTCTTT+TGG 0.266950 1:-4644173 MsG0180000339.01.T01:CDS
GAAGGGGATCATGTTATTAT+TGG 0.267190 1:-4641312 MsG0180000339.01.T01:CDS
ATAGATCCAACATCCTTAAA+TGG 0.267794 1:-4644720 MsG0180000339.01.T01:CDS
GGTTTGGTTTGTTCTTTGTT+AGG 0.271110 1:-4644415 MsG0180000339.01.T01:CDS
TCAAAGCTCTTAAGGATCTT+AGG 0.281536 1:-4644495 MsG0180000339.01.T01:CDS
CGTTTACAGGAGTCTGAGTT+TGG 0.301109 1:-4641081 MsG0180000339.01.T01:exon
ATAATTCCTCCTAACAATAA+TGG 0.308146 1:+4641514 None:intergenic
AAGCGATTGCCACCCTTTCC+AGG 0.318925 1:+4642122 None:intergenic
GCCTTTGAAGCACATTCTTC+AGG 0.321820 1:+4643809 None:intergenic
AACACTTGAAGAAGGGAAAT+TGG 0.332578 1:-4643945 MsG0180000339.01.T01:CDS
TGAATAAAACCATTATTGTT+AGG 0.334061 1:-4641523 MsG0180000339.01.T01:CDS
GAAGATTTCTGTTTCAAAAC+AGG 0.345157 1:+4643731 None:intergenic
ATTGATTGAAATGTTGTTGA+TGG 0.345273 1:-4644227 MsG0180000339.01.T01:CDS
CATAACTCTTGCATTGTTGT+TGG 0.349959 1:+4644673 None:intergenic
GGAAAATGGCGGGGTTGGTT+TGG 0.353204 1:-4644431 MsG0180000339.01.T01:CDS
TGCATTGGTTCAAGTGAGAT+TGG 0.353424 1:+4644778 None:intergenic
GGATGTTCAAGGAAGAGTTT+TGG 0.360543 1:-4644560 MsG0180000339.01.T01:CDS
GACTCCTGTAAACGCCTTCT+TGG 0.362038 1:+4641090 None:intergenic
CAACAACAATGCAAGAGTTA+TGG 0.362659 1:-4644672 MsG0180000339.01.T01:CDS
GGTGCCAAGAAGGCGTTTAC+AGG 0.366657 1:-4641094 MsG0180000339.01.T01:CDS
AGACCAATTAATATCCCATT+TGG 0.368703 1:+4644115 None:intergenic
AAGGATGTTGGATCTATCAT+AGG 0.371646 1:+4644726 None:intergenic
GGGACACTTCTTGTCAATAT+AGG 0.373630 1:+4641607 None:intergenic
AAATTTGAATAACGAGTGTT+TGG 0.375150 1:-4643999 MsG0180000339.01.T01:CDS
TGACCTGTGCAAAGTGTAAC+AGG 0.377472 1:+4644751 None:intergenic
ACCACATTAGGTATAATGTT+TGG 0.378726 1:+4643908 None:intergenic
GCATCCAGCTAAAGTTTCAT+TGG 0.383621 1:-4644302 MsG0180000339.01.T01:CDS
AGGAAAACAGTGTTGGAAAA+TGG 0.387358 1:-4644445 MsG0180000339.01.T01:CDS
AACAACAATGCAAGAGTTAT+GGG 0.388335 1:-4644671 MsG0180000339.01.T01:CDS
TGAGATTAATAATCCTTTGT+TGG 0.392736 1:-4644920 MsG0180000339.01.T01:CDS
TTGCTTCAGAAAAGCCTTCT+CGG 0.396604 1:+4642190 None:intergenic
GATAGCACTTTACATATTAG+AGG 0.398032 1:-4643975 MsG0180000339.01.T01:CDS
GAGATTAATAATCCTTTGTT+GGG 0.398485 1:-4644919 MsG0180000339.01.T01:CDS
AAAGGCTGTGGAAGCTGGAT+TGG 0.406186 1:-4643792 MsG0180000339.01.T01:CDS
AAGTAGAGTCAAAGCTCTTA+AGG 0.410312 1:-4644503 MsG0180000339.01.T01:CDS
TGAAAACCATTTAAGGATGT+TGG 0.416261 1:+4644714 None:intergenic
TTTGGTTGGATTATTGAGAT+TGG 0.418112 1:-4644155 MsG0180000339.01.T01:CDS
GCTTCAAAGGCTGTGGAAGC+TGG 0.429451 1:-4643797 MsG0180000339.01.T01:CDS
TGAAATGTTGTTGATGGAAG+TGG 0.440393 1:-4644221 MsG0180000339.01.T01:CDS
TCTGAGTTTGGAATATTTAG+TGG 0.443216 1:-4641069 MsG0180000339.01.T01:exon
CAATTGTTTGAGAGTGTTGT+TGG 0.445240 1:+4644633 None:intergenic
TTTGAGAAAGAAACCTTCAA+TGG 0.449940 1:+4642058 None:intergenic
AGAGATAAGAAACATCCAAA+TGG 0.458686 1:-4644130 MsG0180000339.01.T01:CDS
TCAAACAATTGATCTTTACT+TGG 0.459813 1:-4644621 MsG0180000339.01.T01:CDS
TTGTTTCTCATGTTTGTGCT+AGG 0.464535 1:-4644465 MsG0180000339.01.T01:CDS
ATCAACATCTTGACCACATT+AGG 0.469429 1:+4643896 None:intergenic
CCCTAGGAGTCTTAAAACTA+AGG 0.476406 1:+4642084 None:intergenic
AGTGGAAAGAAATGAAACTA+TGG 0.477086 1:-4644203 MsG0180000339.01.T01:CDS
AACCTCACTGTCTTCGAAAG+TGG 0.480699 1:+4641160 None:intergenic
ACTCCTAGGGAAGCCATTGA+AGG 0.484194 1:-4642071 MsG0180000339.01.T01:intron
GCTGGATCTTCTAGTGGTGC+CGG 0.487132 1:-4641115 MsG0180000339.01.T01:CDS
TGGTTCTCACACAAGTACTT+AGG 0.487678 1:-4644601 MsG0180000339.01.T01:CDS
GTTGTTGATATTATGAATGA+AGG 0.490566 1:-4644280 MsG0180000339.01.T01:CDS
ATGTTATTATTGGCCAATGC+AGG 0.499585 1:-4641302 MsG0180000339.01.T01:intron
TACAATGATCTAACCTGCAT+TGG 0.500383 1:+4641289 None:intergenic
AATTGTTTGAGAGTGTTGTT+GGG 0.500960 1:+4644634 None:intergenic
GAGATAAGAAACATCCAAAT+GGG 0.501701 1:-4644129 MsG0180000339.01.T01:CDS
GAGACACTCAAGAAGGTAAA+GGG 0.502037 1:-4644529 MsG0180000339.01.T01:CDS
ATTGGACATATAAACACATA+AGG 0.504104 1:+4644796 None:intergenic
ATCCGAGGTCGTATCATATC+CGG 0.504599 1:-4641566 MsG0180000339.01.T01:CDS
CTGAGTTTGGAATATTTAGT+GGG 0.510354 1:-4641068 MsG0180000339.01.T01:exon
TCTGGGAAGGGGAAGAGACC+TGG 0.510724 1:-4642140 MsG0180000339.01.T01:CDS
TAGTGGTGCCGGTGCCAAGA+AGG 0.518324 1:-4641104 MsG0180000339.01.T01:CDS
AAACAGTGTTGGAAAATGGC+GGG 0.518645 1:-4644441 MsG0180000339.01.T01:CDS
ATTTGAAAGTTGTTCGGTGA+AGG 0.519430 1:-4640747 MsG0180000339.01.T01:three_prime_UTR
AAGAAGCTTGAGGATGTTCA+AGG 0.520273 1:-4644571 MsG0180000339.01.T01:CDS
GACAAGAAGTGTCCCTTCAC+TGG 0.524673 1:-4641599 MsG0180000339.01.T01:CDS
GTGTTGGAAAATGGCGGGGT+TGG 0.525268 1:-4644436 MsG0180000339.01.T01:CDS
TAAGCACTGCACTGCCATCA+TGG 0.526180 1:+4640880 None:intergenic
ACAACCAATGAAACTTTAGC+TGG 0.528214 1:+4644298 None:intergenic
GGAGACACTCAAGAAGGTAA+AGG 0.529677 1:-4644530 MsG0180000339.01.T01:CDS
ATCACCTTGTTTCCGAGTGA+AGG 0.529932 1:-4641334 MsG0180000339.01.T01:CDS
AAGGGGAAGAGACCTGGAAA+GGG 0.530695 1:-4642134 MsG0180000339.01.T01:CDS
AGTGTAACAGGCTCTTGCAT+TGG 0.532871 1:+4644763 None:intergenic
CCTTGTTTCCGAGTGAAGGA+AGG 0.534218 1:-4641330 MsG0180000339.01.T01:CDS
CCTTCCTTCACTCGGAAACA+AGG 0.542963 1:+4641330 None:intergenic
TGCTCGAAGATATCTGGGAA+GGG 0.550883 1:-4642152 MsG0180000339.01.T01:CDS
GGTAAAATCTCAATCAATTG+CGG 0.551711 1:+4644022 None:intergenic
CTTGTTTCCGAGTGAAGGAA+GGG 0.551830 1:-4641329 MsG0180000339.01.T01:CDS
ATAAAACCATTATTGTTAGG+AGG 0.551945 1:-4641520 MsG0180000339.01.T01:CDS
ACCTGAAGAATGTGCTTCAA+AGG 0.554133 1:-4643810 MsG0180000339.01.T01:CDS
GTATTGAAAGTCATCCCAGC+TGG 0.559579 1:-4641133 MsG0180000339.01.T01:CDS
AGAATGTGCTTCAAAGGCTG+TGG 0.559930 1:-4643804 MsG0180000339.01.T01:CDS
GGGAAGAGACCTGGAAAGGG+TGG 0.564985 1:-4642131 MsG0180000339.01.T01:CDS
TTTGAATTTGTAGACCGAGA+AGG 0.567346 1:-4642204 MsG0180000339.01.T01:intron
GTATTGTCAACACTTGAAGA+AGG 0.568213 1:-4643953 MsG0180000339.01.T01:CDS
GCACCACTAGAAGATCCAGC+TGG 0.568341 1:+4641118 None:intergenic
ATCCCAGCTGGATCTTCTAG+TGG 0.570183 1:-4641121 MsG0180000339.01.T01:CDS
GAAGGGGAAGAGACCTGGAA+AGG 0.571357 1:-4642135 MsG0180000339.01.T01:CDS
CGTGTGCAGGAATATTAGAA+TGG 0.572181 1:+4641358 None:intergenic
TCCAAACATTATACCTAATG+TGG 0.574326 1:-4643909 MsG0180000339.01.T01:CDS
CTTAGCACTATGGCAAGTAC+CGG 0.576116 1:+4641547 None:intergenic
CATGATCCCCTTCCTTCACT+CGG 0.580378 1:+4641322 None:intergenic
GTGCTCGAAGATATCTGGGA+AGG 0.582495 1:-4642153 MsG0180000339.01.T01:CDS
AAACCTTCAATGGCTTCCCT+AGG 0.582868 1:+4642068 None:intergenic
GAGCCTGTTACACTTTGCAC+AGG 0.589911 1:-4644754 MsG0180000339.01.T01:CDS
AGAAGCTCTATGATAAGCAT+AGG 0.590919 1:-4644052 MsG0180000339.01.T01:CDS
AAACAAGGTGATACGTGTGC+AGG 0.596227 1:+4641345 None:intergenic
GATGTTTCAAAACCCAACAA+AGG 0.598829 1:+4644907 None:intergenic
GCTCGAAGATATCTGGGAAG+GGG 0.598893 1:-4642151 MsG0180000339.01.T01:CDS
TTGTGCTAGGAAAACAGTGT+TGG 0.603588 1:-4644452 MsG0180000339.01.T01:CDS
TATTGTCAACACTTGAAGAA+GGG 0.604875 1:-4643952 MsG0180000339.01.T01:CDS
GATTGAGACATTACCAGTGA+AGG 0.618985 1:+4641586 None:intergenic
AACATTGGAGACACTCAAGA+AGG 0.620353 1:-4644536 MsG0180000339.01.T01:CDS
AACAGTGTTGGAAAATGGCG+GGG 0.621402 1:-4644440 MsG0180000339.01.T01:CDS
TTGTTTCCGAGTGAAGGAAG+GGG 0.622320 1:-4641328 MsG0180000339.01.T01:CDS
ATTGAGACATTACCAGTGAA+GGG 0.624989 1:+4641587 None:intergenic
CACCACTAGAAGATCCAGCT+GGG 0.629304 1:+4641119 None:intergenic
GTTGTTGGTTGTGAAGCTAT+CGG 0.633853 1:-4644376 MsG0180000339.01.T01:CDS
AAAACAGTGTTGGAAAATGG+CGG 0.637218 1:-4644442 MsG0180000339.01.T01:CDS
AGGAATGAAGAAGAAGCTTG+AGG 0.637995 1:-4644581 MsG0180000339.01.T01:CDS
ACTGGTAATGTCTCAATCCG+AGG 0.640857 1:-4641581 MsG0180000339.01.T01:CDS
TGTAAACGCCTTCTTGGCAC+CGG 0.648607 1:+4641096 None:intergenic
ATTTCATTAAGAAATATCAG+AGG 0.666848 1:-4641487 MsG0180000339.01.T01:intron
GTTCGAGTACTAGTGTACAA+TGG 0.690452 1:-4640811 MsG0180000339.01.T01:three_prime_UTR
GGCCACTTTCGAAGACAGTG+AGG 0.699031 1:-4641162 MsG0180000339.01.T01:CDS
TACCGGATATGATACGACCT+CGG 0.712271 1:+4641564 None:intergenic
TTATTGCTTGTGATTCAGAG+TGG 0.747357 1:-4643761 MsG0180000339.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATACAATTATTTGATT+AGG + Chr1:4642467-4642486 None:intergenic 10.0%
!! GTTACCAATTTATTTATATA+AGG - Chr1:4643982-4644001 MsG0180000339.01.T01:CDS 15.0%
!!! AAAACTTTTTTTTCATTGAT+CGG - Chr1:4642995-4643014 MsG0180000339.01.T01:intron 15.0%
!!! ATTTTTATTTGAAAGTTGTT+CGG - Chr1:4644905-4644924 MsG0180000339.01.T01:CDS 15.0%
!!! TTTTTTGTTTTGATAAATCT+TGG - Chr1:4643406-4643425 MsG0180000339.01.T01:intron 15.0%
!! AAACATATGAACATAACAAT+TGG + Chr1:4642061-4642080 None:intergenic 20.0%
!! AGGAAGATAAAAAGATTTAT+TGG - Chr1:4644931-4644950 MsG0180000339.01.T01:CDS 20.0%
!! AGGACCTTATATAAATAAAT+TGG + Chr1:4643989-4644008 None:intergenic 20.0%
!! ATTTCATTAAGAAATATCAG+AGG - Chr1:4644171-4644190 MsG0180000339.01.T01:CDS 20.0%
!! CAAACAAACTGAAAATAAAT+TGG + Chr1:4642212-4642231 None:intergenic 20.0%
!! CAAATTATAGATTAATGTGA+AGG + Chr1:4643384-4643403 None:intergenic 20.0%
!! CAATAACAATATTGCTAAAT+TGG + Chr1:4643098-4643117 None:intergenic 20.0%
!! GTATTAGATTACAAAAACAA+AGG + Chr1:4644009-4644028 None:intergenic 20.0%
!! GTTTGTATGAAGAATAAAAT+TGG + Chr1:4642417-4642436 None:intergenic 20.0%
!! TGAATAAAACCATTATTGTT+AGG - Chr1:4644135-4644154 MsG0180000339.01.T01:CDS 20.0%
!! TTCCTATAAGATTAAGAAAA+AGG + Chr1:4644031-4644050 None:intergenic 20.0%
!!! AATTTTACAGTGCAAAAATA+TGG - Chr1:4642237-4642256 MsG0180000339.01.T01:intron 20.0%
!!! CAGTAAAACATTTGAAATTA+AGG + Chr1:4644633-4644652 None:intergenic 20.0%
!!! TACCTTTTTCTTAATCTTAT+AGG - Chr1:4644026-4644045 MsG0180000339.01.T01:CDS 20.0%
!!! TAGATTGGTTTATTATTGAT+AGG - Chr1:4643715-4643734 MsG0180000339.01.T01:CDS 20.0%
!!! TTGGATCAAATTTGAAATTA+TGG + Chr1:4642490-4642509 None:intergenic 20.0%
!!! TTTTTTTGTTTATCCAAGTA+AGG - Chr1:4644420-4644439 MsG0180000339.01.T01:CDS 20.0%
! AAACACTCGTTATTCAAATT+TGG + Chr1:4641660-4641679 None:intergenic 25.0%
! AAATTTGAATAACGAGTGTT+TGG - Chr1:4641659-4641678 MsG0180000339.01.T01:intron 25.0%
! AAGCTTATGAAAATAGCTTA+TGG + Chr1:4643823-4643842 None:intergenic 25.0%
! AGGACTTATTAAAACAGTTT+AGG + Chr1:4643893-4643912 None:intergenic 25.0%
! ATAAAACCATTATTGTTAGG+AGG - Chr1:4644138-4644157 MsG0180000339.01.T01:CDS 25.0%
! ATAATTCCTCCTAACAATAA+TGG + Chr1:4644147-4644166 None:intergenic 25.0%
! ATTGATTGAAATGTTGTTGA+TGG - Chr1:4641431-4641450 MsG0180000339.01.T01:intron 25.0%
! ATTGGACATATAAACACATA+AGG + Chr1:4640865-4640884 None:intergenic 25.0%
! GAAATAAAGCTTCAAATACT+TGG + Chr1:4642392-4642411 None:intergenic 25.0%
! GAGATTAATAATCCTTTGTT+GGG - Chr1:4640739-4640758 MsG0180000339.01.T01:three_prime_UTR 25.0%
! GTTGTTGATATTATGAATGA+AGG - Chr1:4641378-4641397 MsG0180000339.01.T01:intron 25.0%
! TAAACCACGAATATGAAAAT+TGG + Chr1:4643632-4643651 None:intergenic 25.0%
! TCAAACAATTGATCTTTACT+TGG - Chr1:4641037-4641056 MsG0180000339.01.T01:three_prime_UTR 25.0%
! TCTTGGATTTACTAACTAAT+TGG - Chr1:4643423-4643442 MsG0180000339.01.T01:intron 25.0%
! TGAGATTAATAATCCTTTGT+TGG - Chr1:4640738-4640757 MsG0180000339.01.T01:three_prime_UTR 25.0%
! TTTAAGAATCATAGGTAGAT+TGG - Chr1:4643700-4643719 MsG0180000339.01.T01:intron 25.0%
!! AATTGGCTTATATAAGACAT+AGG + Chr1:4642152-4642171 None:intergenic 25.0%
!! AATTTGCACTGTCAATTTTA+TGG - Chr1:4641808-4641827 MsG0180000339.01.T01:intron 25.0%
!! ATTTGCACTGTCAATTTTAT+GGG - Chr1:4641809-4641828 MsG0180000339.01.T01:intron 25.0%
!! CAAGATGAATTTGAAATTTC+TGG - Chr1:4642267-4642286 MsG0180000339.01.T01:intron 25.0%
!! GGTAACTTTTCATTTGAATA+GGG + Chr1:4643175-4643194 None:intergenic 25.0%
!! GTAACTTTTCATTTGAATAG+GGG + Chr1:4643174-4643193 None:intergenic 25.0%
!! TAAGCCAATTTGTTCATATA+TGG - Chr1:4642162-4642181 MsG0180000339.01.T01:CDS 25.0%
!! TTTTATTCATCTTAGCACTA+TGG + Chr1:4644124-4644143 None:intergenic 25.0%
!! TTTTCATATTCGTGGTTTAA+TGG - Chr1:4643633-4643652 MsG0180000339.01.T01:intron 25.0%
!!! AATCGCTTTTATAAAACTGT+TGG - Chr1:4643551-4643570 MsG0180000339.01.T01:intron 25.0%
!!! CATTGTGTTTTAAGAATCAT+AGG - Chr1:4643692-4643711 MsG0180000339.01.T01:intron 25.0%
!!! TTTGTTATTGTATGTGTAGT+TGG - Chr1:4642108-4642127 MsG0180000339.01.T01:CDS 25.0%
AACAACAATGCAAGAGTTAT+GGG - Chr1:4640987-4641006 MsG0180000339.01.T01:three_prime_UTR 30.0%
ACCACATTAGGTATAATGTT+TGG + Chr1:4641753-4641772 None:intergenic 30.0%
AGACCAATTAATATCCCATT+TGG + Chr1:4641546-4641565 None:intergenic 30.0%
AGAGATAAGAAACATCCAAA+TGG - Chr1:4641528-4641547 MsG0180000339.01.T01:CDS 30.0%
AGTGGAAAGAAATGAAACTA+TGG - Chr1:4641455-4641474 MsG0180000339.01.T01:intron 30.0%
ATAGATCCAACATCCTTAAA+TGG - Chr1:4640938-4640957 MsG0180000339.01.T01:three_prime_UTR 30.0%
CATCCAAATGGGATATTAAT+TGG - Chr1:4641540-4641559 MsG0180000339.01.T01:CDS 30.0%
CCATCCATATATGAACAAAT+TGG + Chr1:4642169-4642188 None:intergenic 30.0%
CGAAAATAGTGTCTTGAAAT+TGG - Chr1:4642826-4642845 MsG0180000339.01.T01:intron 30.0%
CTAAATATGCACATCTCTAT+CGG + Chr1:4642801-4642820 None:intergenic 30.0%
CTCTGTTTGGTAAAAAATAG+TGG + Chr1:4643800-4643819 None:intergenic 30.0%
GAAGATTTCTGTTTCAAAAC+AGG + Chr1:4641930-4641949 None:intergenic 30.0%
GAGATAAGAAACATCCAAAT+GGG - Chr1:4641529-4641548 MsG0180000339.01.T01:CDS 30.0%
GATAGCACTTTACATATTAG+AGG - Chr1:4641683-4641702 MsG0180000339.01.T01:intron 30.0%
GGTAAAATCTCAATCAATTG+CGG + Chr1:4641639-4641658 None:intergenic 30.0%
TATCGGTATCATTGTGAATT+TGG - Chr1:4641299-4641318 MsG0180000339.01.T01:intron 30.0%
TATTGTCAACACTTGAAGAA+GGG - Chr1:4641706-4641725 MsG0180000339.01.T01:intron 30.0%
TCCAAACATTATACCTAATG+TGG - Chr1:4641749-4641768 MsG0180000339.01.T01:intron 30.0%
TGAAAACCATTTAAGGATGT+TGG + Chr1:4640947-4640966 None:intergenic 30.0%
TGTGTATGCTTGTTCTTATT+AGG - Chr1:4644266-4644285 MsG0180000339.01.T01:CDS 30.0%
TTTGAGAAAGAAACCTTCAA+TGG + Chr1:4643603-4643622 None:intergenic 30.0%
TTTGGTTGGATTATTGAGAT+TGG - Chr1:4641503-4641522 MsG0180000339.01.T01:CDS 30.0%
! AATGTTTTACTGTTCTGACT+TGG - Chr1:4644641-4644660 MsG0180000339.01.T01:CDS 30.0%
! ATCCTTAAATGGTTTTCACT+TGG - Chr1:4640949-4640968 MsG0180000339.01.T01:three_prime_UTR 30.0%
! ATTTGGGCTTTTACAATGTT+GGG + Chr1:4643196-4643215 None:intergenic 30.0%
! CCAATTTGTTCATATATGGA+TGG - Chr1:4642166-4642185 MsG0180000339.01.T01:CDS 30.0%
! CTGAGTTTGGAATATTTAGT+GGG - Chr1:4644590-4644609 MsG0180000339.01.T01:CDS 30.0%
! GGGTAACTTTTCATTTGAAT+AGG + Chr1:4643176-4643195 None:intergenic 30.0%
! GTTTCCAATTTTCATATTCG+TGG - Chr1:4643625-4643644 MsG0180000339.01.T01:intron 30.0%
! TCTGAGTTTGGAATATTTAG+TGG - Chr1:4644589-4644608 MsG0180000339.01.T01:CDS 30.0%
! TCTTTTACTTCACATGTTGT+TGG - Chr1:4641267-4641286 MsG0180000339.01.T01:intron 30.0%
! TTCATCATGGCAAGAAATTT+TGG + Chr1:4642913-4642932 None:intergenic 30.0%
!! AATTGTTTGAGAGTGTTGTT+GGG + Chr1:4641027-4641046 None:intergenic 30.0%
!! GTTTTGTTAGAACAAATGTG+TGG + Chr1:4642980-4642999 None:intergenic 30.0%
!!! AACGTTTTGAAGATTCTACT+TGG - Chr1:4642313-4642332 MsG0180000339.01.T01:intron 30.0%
!!! GGTTTTGAAACATCTTTCAA+AGG - Chr1:4640760-4640779 MsG0180000339.01.T01:three_prime_UTR 30.0%
!!! TGTTTCAAGTTTGAGTCTTT+TGG - Chr1:4641485-4641504 MsG0180000339.01.T01:intron 30.0%
!!! TTGAGAGTCATTTTTCATCA+TGG + Chr1:4642926-4642945 None:intergenic 30.0%
AAAAAGTCGCAGAAAGTTAG+AGG + Chr1:4642593-4642612 None:intergenic 35.0%
AACACTTGAAGAAGGGAAAT+TGG - Chr1:4641713-4641732 MsG0180000339.01.T01:intron 35.0%
AAGCTTTCATGAAGAGCTTA+TGG - Chr1:4643837-4643856 MsG0180000339.01.T01:CDS 35.0%
AAGGATGTTGGATCTATCAT+AGG + Chr1:4640935-4640954 None:intergenic 35.0%
AAGTAGAGTCAAAGCTCTTA+AGG - Chr1:4641155-4641174 MsG0180000339.01.T01:CDS 35.0%
ACAACCAATGAAACTTTAGC+TGG + Chr1:4641363-4641382 None:intergenic 35.0%
AGAAGCTCTATGATAAGCAT+AGG - Chr1:4641606-4641625 MsG0180000339.01.T01:CDS 35.0%
AGATAAGCTCAAATAAGCCA+TGG - Chr1:4643950-4643969 MsG0180000339.01.T01:CDS 35.0%
AGTTGAATAAGACTAAGTCG+AGG + Chr1:4642562-4642581 None:intergenic 35.0%
ATCAACATCTTGACCACATT+AGG + Chr1:4641765-4641784 None:intergenic 35.0%
ATGTTATTATTGGCCAATGC+AGG - Chr1:4644356-4644375 MsG0180000339.01.T01:CDS 35.0%
ATTGAGACATTACCAGTGAA+GGG + Chr1:4644074-4644093 None:intergenic 35.0%
CAACAACAATGCAAGAGTTA+TGG - Chr1:4640986-4641005 MsG0180000339.01.T01:three_prime_UTR 35.0%
CACAAAAACAGTTCCTTACT+TGG + Chr1:4644436-4644455 None:intergenic 35.0%
CATAACTCTTGCATTGTTGT+TGG + Chr1:4640988-4641007 None:intergenic 35.0%
CTATGAACAAGCAGAAGTAA+AGG + Chr1:4644477-4644496 None:intergenic 35.0%
CTTTACTTCTGCTTGTTCAT+AGG - Chr1:4644475-4644494 MsG0180000339.01.T01:CDS 35.0%
GAAGGGGATCATGTTATTAT+TGG - Chr1:4644346-4644365 MsG0180000339.01.T01:CDS 35.0%
GACCAAGTGAAAACCATTTA+AGG + Chr1:4640954-4640973 None:intergenic 35.0%
GATGTTTCAAAACCCAACAA+AGG + Chr1:4640754-4640773 None:intergenic 35.0%
GTATTGTCAACACTTGAAGA+AGG - Chr1:4641705-4641724 MsG0180000339.01.T01:intron 35.0%
GTTGAATAAGACTAAGTCGA+GGG + Chr1:4642561-4642580 None:intergenic 35.0%
TACAATGATCTAACCTGCAT+TGG + Chr1:4644372-4644391 None:intergenic 35.0%
TCAAAGCTCTTAAGGATCTT+AGG - Chr1:4641163-4641182 MsG0180000339.01.T01:CDS 35.0%
TTATTGCTTGTGATTCAGAG+TGG - Chr1:4641897-4641916 MsG0180000339.01.T01:intron 35.0%
TTTGAATTTGTAGACCGAGA+AGG - Chr1:4643454-4643473 MsG0180000339.01.T01:intron 35.0%
! AAAACAGTGTTGGAAAATGG+CGG - Chr1:4641216-4641235 MsG0180000339.01.T01:intron 35.0%
! AAATAGCTTATGGCTCTGTT+TGG + Chr1:4643813-4643832 None:intergenic 35.0%
! AGGAAAACAGTGTTGGAAAA+TGG - Chr1:4641213-4641232 MsG0180000339.01.T01:intron 35.0%
! ATTTGAAAGTTGTTCGGTGA+AGG - Chr1:4644911-4644930 MsG0180000339.01.T01:CDS 35.0%
! CATTTGGGCTTTTACAATGT+TGG + Chr1:4643197-4643216 None:intergenic 35.0%
! TCAAGTTTGAGTCTTTTGGT+TGG - Chr1:4641489-4641508 MsG0180000339.01.T01:CDS 35.0%
! TGAAATGTTGTTGATGGAAG+TGG - Chr1:4641437-4641456 MsG0180000339.01.T01:intron 35.0%
! TGCAGTAATTTTTGCCATGA+TGG - Chr1:4644764-4644783 MsG0180000339.01.T01:CDS 35.0%
! TTGGTAACATAAACATGCCA+TGG + Chr1:4643970-4643989 None:intergenic 35.0%
! TTGTTTCTCATGTTTGTGCT+AGG - Chr1:4641193-4641212 MsG0180000339.01.T01:intron 35.0%
! TTTTGTGCTCGAAGATATCT+GGG - Chr1:4643501-4643520 MsG0180000339.01.T01:intron 35.0%
! TTTTTGTGCTCGAAGATATC+TGG - Chr1:4643500-4643519 MsG0180000339.01.T01:intron 35.0%
!! AAAAGTATCATCGTCTTCAC+AGG - Chr1:4643258-4643277 MsG0180000339.01.T01:intron 35.0%
!! CAATTGTTTGAGAGTGTTGT+TGG + Chr1:4641028-4641047 None:intergenic 35.0%
!! GGTTTGGTTTGTTCTTTGTT+AGG - Chr1:4641243-4641262 MsG0180000339.01.T01:intron 35.0%
!!! AGGAAGAGTTTTGGAAACAT+TGG - Chr1:4641107-4641126 MsG0180000339.01.T01:CDS 35.0%
!!! CCTTAGTTTTAAGACTCCTA+GGG - Chr1:4643574-4643593 MsG0180000339.01.T01:intron 35.0%
AACATTGGAGACACTCAAGA+AGG - Chr1:4641122-4641141 MsG0180000339.01.T01:CDS 40.0%
AAGAAGCTTGAGGATGTTCA+AGG - Chr1:4641087-4641106 MsG0180000339.01.T01:CDS 40.0%
ACCTGAAGAATGTGCTTCAA+AGG - Chr1:4641848-4641867 MsG0180000339.01.T01:intron 40.0%
AGCAGAAGTAAAGGTAATCG+AGG + Chr1:4644468-4644487 None:intergenic 40.0%
AGGAATGAAGAAGAAGCTTG+AGG - Chr1:4641077-4641096 MsG0180000339.01.T01:exon 40.0%
AGTCTAGATTCAAATCCGAG+TGG - Chr1:4643066-4643085 MsG0180000339.01.T01:intron 40.0%
ATTCATTCCCCTTTCTTACC+AGG - Chr1:4644195-4644214 MsG0180000339.01.T01:CDS 40.0%
ATTGCCAAGTTGTTCAGTGT+TGG - Chr1:4643114-4643133 MsG0180000339.01.T01:intron 40.0%
CAGATTCAAGGTGCAAAACT+CGG - Chr1:4643300-4643319 MsG0180000339.01.T01:intron 40.0%
CCCTAGGAGTCTTAAAACTA+AGG + Chr1:4643577-4643596 None:intergenic 40.0%
CGTGTGCAGGAATATTAGAA+TGG + Chr1:4644303-4644322 None:intergenic 40.0%
GAGACACTCAAGAAGGTAAA+GGG - Chr1:4641129-4641148 MsG0180000339.01.T01:CDS 40.0%
GAGGGAAGCGATAATCTTAT+CGG + Chr1:4642543-4642562 None:intergenic 40.0%
GATTGAGACATTACCAGTGA+AGG + Chr1:4644075-4644094 None:intergenic 40.0%
GCAGAAGTAAAGGTAATCGA+GGG + Chr1:4644467-4644486 None:intergenic 40.0%
GCATCCAGCTAAAGTTTCAT+TGG - Chr1:4641356-4641375 MsG0180000339.01.T01:CDS 40.0%
GGGACACTTCTTGTCAATAT+AGG + Chr1:4644054-4644073 None:intergenic 40.0%
GGTCACGATCTCATCAAATT+TGG - Chr1:4644662-4644681 MsG0180000339.01.T01:CDS 40.0%
GTTCGAGTACTAGTGTACAA+TGG - Chr1:4644847-4644866 MsG0180000339.01.T01:CDS 40.0%
TGGTTCTCACACAAGTACTT+AGG - Chr1:4641057-4641076 MsG0180000339.01.T01:three_prime_UTR 40.0%
TTCATCAACTCAACCAACCA+TGG - Chr1:4643338-4643357 MsG0180000339.01.T01:intron 40.0%
TTCATTCCCCTTTCTTACCA+GGG - Chr1:4644196-4644215 MsG0180000339.01.T01:CDS 40.0%
TTGCCAAGTTGTTCAGTGTT+GGG - Chr1:4643115-4643134 MsG0180000339.01.T01:intron 40.0%
TTGCTTCAGAAAAGCCTTCT+CGG + Chr1:4643471-4643490 None:intergenic 40.0%
TTGTGCTAGGAAAACAGTGT+TGG - Chr1:4641206-4641225 MsG0180000339.01.T01:intron 40.0%
! AAACAGTGTTGGAAAATGGC+GGG - Chr1:4641217-4641236 MsG0180000339.01.T01:intron 40.0%
! GGATGTTCAAGGAAGAGTTT+TGG - Chr1:4641098-4641117 MsG0180000339.01.T01:CDS 40.0%
! GTTGTTGGTTGTGAAGCTAT+CGG - Chr1:4641282-4641301 MsG0180000339.01.T01:intron 40.0%
!! CAAACTAACTTGTTCAGCCA+TGG + Chr1:4643358-4643377 None:intergenic 40.0%
!! GAGCTTTAGAGACAGTACAT+TGG + Chr1:4642509-4642528 None:intergenic 40.0%
!! TGCATTGGTTCAAGTGAGAT+TGG + Chr1:4640883-4640902 None:intergenic 40.0%
!!! GCCTTAGTTTTAAGACTCCT+AGG - Chr1:4643573-4643592 MsG0180000339.01.T01:intron 40.0%
AAACAAGGTGATACGTGTGC+AGG + Chr1:4644316-4644335 None:intergenic 45.0%
AAACCTTCAATGGCTTCCCT+AGG + Chr1:4643593-4643612 None:intergenic 45.0%
AACCTCACTGTCTTCGAAAG+TGG + Chr1:4644501-4644520 None:intergenic 45.0%
AGAATGTGCTTCAAAGGCTG+TGG - Chr1:4641854-4641873 MsG0180000339.01.T01:intron 45.0%
AGTGTAACAGGCTCTTGCAT+TGG + Chr1:4640898-4640917 None:intergenic 45.0%
ATCATCGTCTTCACAGGCTA+GGG - Chr1:4643264-4643283 MsG0180000339.01.T01:intron 45.0%
ATCCGAGGTCGTATCATATC+CGG - Chr1:4644092-4644111 MsG0180000339.01.T01:CDS 45.0%
CGTTTACAGGAGTCTGAGTT+TGG - Chr1:4644577-4644596 MsG0180000339.01.T01:CDS 45.0%
CTAAATTGGACACCTCCACT+CGG + Chr1:4643084-4643103 None:intergenic 45.0%
CTAGATTCAAATCCGAGTGG+AGG - Chr1:4643069-4643088 MsG0180000339.01.T01:intron 45.0%
CTTAGCACTATGGCAAGTAC+CGG + Chr1:4644114-4644133 None:intergenic 45.0%
CTTGTTTCCGAGTGAAGGAA+GGG - Chr1:4644329-4644348 MsG0180000339.01.T01:CDS 45.0%
GGAGACACTCAAGAAGGTAA+AGG - Chr1:4641128-4641147 MsG0180000339.01.T01:CDS 45.0%
GTATTGAAAGTCATCCCAGC+TGG - Chr1:4644525-4644544 MsG0180000339.01.T01:CDS 45.0%
TACCGGATATGATACGACCT+CGG + Chr1:4644097-4644116 None:intergenic 45.0%
TATCATCGTCTTCACAGGCT+AGG - Chr1:4643263-4643282 MsG0180000339.01.T01:intron 45.0%
TATGCACATCTCTATCGGTC+AGG + Chr1:4642796-4642815 None:intergenic 45.0%
TGACCTGTGCAAAGTGTAAC+AGG + Chr1:4640910-4640929 None:intergenic 45.0%
TGCCAAGTTGTTCAGTGTTG+GGG - Chr1:4643116-4643135 MsG0180000339.01.T01:intron 45.0%
TGCTCGAAGATATCTGGGAA+GGG - Chr1:4643506-4643525 MsG0180000339.01.T01:intron 45.0%
TTGTTTCCGAGTGAAGGAAG+GGG - Chr1:4644330-4644349 MsG0180000339.01.T01:CDS 45.0%
! AACAGTGTTGGAAAATGGCG+GGG - Chr1:4641218-4641237 MsG0180000339.01.T01:intron 45.0%
! ACTGGTAATGTCTCAATCCG+AGG - Chr1:4644077-4644096 MsG0180000339.01.T01:CDS 45.0%
! ATCACCTTGTTTCCGAGTGA+AGG - Chr1:4644324-4644343 MsG0180000339.01.T01:CDS 45.0%
! TGTTGGGGGTGTGTTAGAAA+AGG - Chr1:4643131-4643150 MsG0180000339.01.T01:intron 45.0%
!! CTAACTTGTTCAGCCATGGT+TGG + Chr1:4643354-4643373 None:intergenic 45.0%
!! GCCTTTGAAGCACATTCTTC+AGG + Chr1:4641852-4641871 None:intergenic 45.0%
!! AAAAAAATTAACAATATATA+CGG - Chr1:4642643-4642662 MsG0180000339.01.T01:intron 5.0%
!!! TTTTTAAATTTTTATCATTT+GGG + Chr1:4643212-4643231 None:intergenic 5.0%
!!! TTTTTTAAATTTTTATCATT+TGG + Chr1:4643213-4643232 None:intergenic 5.0%
!!! TTTTTTATTTATTTATCATT+AGG + Chr1:4642863-4642882 None:intergenic 5.0%
AAAGGCTGTGGAAGCTGGAT+TGG - Chr1:4641866-4641885 MsG0180000339.01.T01:intron 50.0%
AAGGGGAAGAGACCTGGAAA+GGG - Chr1:4643524-4643543 MsG0180000339.01.T01:intron 50.0%
ACCCCCAACACTGAACAACT+TGG + Chr1:4643121-4643140 None:intergenic 50.0%
ACTCCTAGGGAAGCCATTGA+AGG - Chr1:4643587-4643606 MsG0180000339.01.T01:intron 50.0%
ATACAGTAAACTGCGCACCC+TGG + Chr1:4644216-4644235 None:intergenic 50.0%
ATCCCAGCTGGATCTTCTAG+TGG - Chr1:4644537-4644556 MsG0180000339.01.T01:CDS 50.0%
CACCACTAGAAGATCCAGCT+GGG + Chr1:4644542-4644561 None:intergenic 50.0%
CATGATCCCCTTCCTTCACT+CGG + Chr1:4644339-4644358 None:intergenic 50.0%
CCTTCCTTCACTCGGAAACA+AGG + Chr1:4644331-4644350 None:intergenic 50.0%
GACTCCTGTAAACGCCTTCT+TGG + Chr1:4644571-4644590 None:intergenic 50.0%
GAGCCTGTTACACTTTGCAC+AGG - Chr1:4640904-4640923 MsG0180000339.01.T01:three_prime_UTR 50.0%
GCTCGAAGATATCTGGGAAG+GGG - Chr1:4643507-4643526 MsG0180000339.01.T01:intron 50.0%
GGGGTGTGTTAGAAAAGGTG+AGG - Chr1:4643136-4643155 MsG0180000339.01.T01:intron 50.0%
GTGACATCATTTGCGTTGCG+AGG + Chr1:4643913-4643932 None:intergenic 50.0%
GTGCTCGAAGATATCTGGGA+AGG - Chr1:4643505-4643524 MsG0180000339.01.T01:intron 50.0%
TACCTACTGCGGCAGATTCA+AGG - Chr1:4643288-4643307 MsG0180000339.01.T01:intron 50.0%
TGTAAACGCCTTCTTGGCAC+CGG + Chr1:4644565-4644584 None:intergenic 50.0%
! CCTTGTTTCCGAGTGAAGGA+AGG - Chr1:4644328-4644347 MsG0180000339.01.T01:CDS 50.0%
! GCCAAGTTGTTCAGTGTTGG+GGG - Chr1:4643117-4643136 MsG0180000339.01.T01:intron 50.0%
! TAAGCACTGCACTGCCATCA+TGG + Chr1:4644781-4644800 None:intergenic 50.0%
!! GACAAGAAGTGTCCCTTCAC+TGG - Chr1:4644059-4644078 MsG0180000339.01.T01:CDS 50.0%
AAGCGATTGCCACCCTTTCC+AGG + Chr1:4643539-4643558 None:intergenic 55.0%
ACTGCGCACCCTGGTAAGAA+AGG + Chr1:4644207-4644226 None:intergenic 55.0%
CACCTTGAATCTGCCGCAGT+AGG + Chr1:4643293-4643312 None:intergenic 55.0%
CAGGCTAGGGTTACCTACTG+CGG - Chr1:4643277-4643296 MsG0180000339.01.T01:intron 55.0%
CTGCGCACCCTGGTAAGAAA+GGG + Chr1:4644206-4644225 None:intergenic 55.0%
GAAGGGGAAGAGACCTGGAA+AGG - Chr1:4643523-4643542 MsG0180000339.01.T01:intron 55.0%
GCACCACTAGAAGATCCAGC+TGG + Chr1:4644543-4644562 None:intergenic 55.0%
GCTGGATCTTCTAGTGGTGC+CGG - Chr1:4644543-4644562 MsG0180000339.01.T01:CDS 55.0%
GCTTCAAAGGCTGTGGAAGC+TGG - Chr1:4641861-4641880 MsG0180000339.01.T01:intron 55.0%
TGCGCACCCTGGTAAGAAAG+GGG + Chr1:4644205-4644224 None:intergenic 55.0%
! GGCCACTTTCGAAGACAGTG+AGG - Chr1:4644496-4644515 MsG0180000339.01.T01:CDS 55.0%
! GTGTTGGAAAATGGCGGGGT+TGG - Chr1:4641222-4641241 MsG0180000339.01.T01:intron 55.0%
!! GGAAAATGGCGGGGTTGGTT+TGG - Chr1:4641227-4641246 MsG0180000339.01.T01:intron 55.0%
!! GGTGCCAAGAAGGCGTTTAC+AGG - Chr1:4644564-4644583 MsG0180000339.01.T01:CDS 55.0%
GGGAAGAGACCTGGAAAGGG+TGG - Chr1:4643527-4643546 MsG0180000339.01.T01:intron 60.0%
TCTGGGAAGGGGAAGAGACC+TGG - Chr1:4643518-4643537 MsG0180000339.01.T01:intron 60.0%
!! TAGTGGTGCCGGTGCCAAGA+AGG - Chr1:4644554-4644573 MsG0180000339.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 4640727 4644953 4640727 ID=MsG0180000339.01;Name=MsG0180000339.01
Chr1 mRNA 4640727 4644953 4640727 ID=MsG0180000339.01.T01;Parent=MsG0180000339.01;Name=MsG0180000339.01.T01;_AED=0.25;_eAED=0.25;_QI=0|0.75|0.8|1|1|1|5|360|572
Chr1 exon 4643709 4644953 4643709 ID=MsG0180000339.01.T01:exon:5392;Parent=MsG0180000339.01.T01
Chr1 exon 4642072 4642213 4642072 ID=MsG0180000339.01.T01:exon:5393;Parent=MsG0180000339.01.T01
Chr1 exon 4641488 4641632 4641488 ID=MsG0180000339.01.T01:exon:5394;Parent=MsG0180000339.01.T01
Chr1 exon 4641303 4641392 4641303 ID=MsG0180000339.01.T01:exon:5395;Parent=MsG0180000339.01.T01
Chr1 exon 4640727 4641183 4640727 ID=MsG0180000339.01.T01:exon:5396;Parent=MsG0180000339.01.T01
Chr1 CDS 4643709 4644953 4643709 ID=MsG0180000339.01.T01:cds;Parent=MsG0180000339.01.T01
Chr1 CDS 4642072 4642213 4642072 ID=MsG0180000339.01.T01:cds;Parent=MsG0180000339.01.T01
Chr1 CDS 4641488 4641632 4641488 ID=MsG0180000339.01.T01:cds;Parent=MsG0180000339.01.T01
Chr1 CDS 4641303 4641392 4641303 ID=MsG0180000339.01.T01:cds;Parent=MsG0180000339.01.T01
Chr1 CDS 4641087 4641183 4641087 ID=MsG0180000339.01.T01:cds;Parent=MsG0180000339.01.T01
Chr1 three_prime_UTR 4640727 4641086 4640727 ID=MsG0180000339.01.T01:three_prime_utr;Parent=MsG0180000339.01.T01
Gene Sequence

>MsG0180000339.01.T01

ATGCTTTCATATGAGATTAATAATCCTTTGTTGGGTTTTGAAACATCTTTCAAAGGTTGTTTTTTTAGTGTCTTAGACACTGAAAAAATAGATCTCAAGTTGATAATTGAAGAGCTTGATTCAATTGATGATGTTCCTTATGTGTTTATATGTCCAATCTCACTTGAACCAATGCAAGAGCCTGTTACACTTTGCACAGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGTTATGGGATGATTCAATCACTCCCAACAACACTCTCAAACAATTGATCTTTACTTGGTTCTCACACAAGTACTTAGGAATGAAGAAGAAGCTTGAGGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTCAAGAAGGTAAAGGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGGAAACTTGTTGTTTCTCATGTTTGTGCTAGGAAAACAGTGTTGGAAAATGGCGGGGTTGGTTTGGTTTGTTCTTTGTTAGGTTCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATCGGTATCATTGTGAATTTGGATTTGAGTTTAGAATTGAAGAGAAAGTATCTTATGCATCCAGCTAAAGTTTCATTGGTTGTTGATATTATGAATGAAGGAACTATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGTGGAAAGAAATGAAACTATGGTTGAGATTGTTTCAAGTTTGAGTCTTTTGGTTGGATTATTGAGATTGGTGAGAGATAAGAAACATCCAAATGGGATATTAATTGGTCTCACATTGCTTAAAAAAGTATTATGTTGTCATGAATCAATTAGAAGCTCTATGATAAGCATAGGAGCAATTCCGCAATTGATTGAGATTTTACCAAATTTGAATAACGAGTGTTTGGAGATAGCACTTTACATATTAGAGGTATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCTAATGTGGTCAAGATGTTGATGAGAGTCTCAGAAAATTGTACACAATTTGCACTGTCAATTTTATGGGCTATTTACAAGCTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAATTATTGCTTGTGATTCAGAGTGGTTGTAATCCTGTTTTGAAACAGAAATCTTCTGAGTTTTTGAAAATGTGTAGTACCGAGAAGGCTTTTCTGAAGCAAAATAAAGTGTTTTTGTGCTCGAAGATATCTGGGAAGGGGAAGAGACCTGGAAAGGGTGGCAATCGCTTTTATAAAACTGTTGGCCTTAGTTTTAAGACTCCTAGGGAAGCCATTGAAGGAACCTATATTGACAAGAAGTGTCCCTTCACTGGTAATGTCTCAATCCGAGGTCGTATCATATCCGGTACTTGCCATAGTGCTAAGATGAATAAAACCATTATTGTTAGGAGGAATTATCTTCATTTCATTAAGAAATATCAGAGGTATGAGAAGCGCCATTCTAATATTCCTGCACACGTATCACCTTGTTTCCGAGTGAAGGAAGGGGATCATGTTATTATTGGCCAATGCAGGCCACTTTCGAAGACAGTGAGGTTCAATGTATTGAAAGTCATCCCAGCTGGATCTTCTAGTGGTGCCGGTGCCAAGAAGGCGTTTACAGGAGTCTGA

Protein sequence

>MsG0180000339.01.T01

MLSYEINNPLLGFETSFKGCFFSVLDTEKIDLKLIIEELDSIDDVPYVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLIFTWFSHKYLGMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTVLENGGVGLVCSLLGSFTSHVVGCEAIGIIVNLDLSLELKRKYLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEVERNETMVEIVSSLSLLVGLLRLVRDKKHPNGILIGLTLLKKVLCCHESIRSSMISIGAIPQLIEILPNLNNECLEIALYILEVLSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQKSSEFLKMCSTEKAFLKQNKVFLCSKISGKGKRPGKGGNRFYKTVGLSFKTPREAIEGTYIDKKCPFTGNVSIRGRIISGTCHSAKMNKTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGAKKAFTGV*