AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041258.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041258.01.T01 MTR_7g108100 88.780 205 10 1 1 205 1 192 3.02e-108 308
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041258.01.T01 AT4G03180 48.000 200 72 5 9 202 7 180 2.51e-39 133
MsG0780041258.01.T01 AT4G03180 48.252 143 58 2 65 202 4 135 1.07e-26 99.8

Find 32 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTCTGTATTTCATAAT+AGG 0.220883 7:+88879350 None:intergenic
ATACAGAATTGAACATCTTT+TGG 0.235696 7:-88879339 MsG0780041258.01.T01:CDS
GTATCCACTGTTATTGGATT+TGG 0.245614 7:+88882629 None:intergenic
TGGATTGTATCCACTGTTAT+TGG 0.269806 7:+88882623 None:intergenic
ATCAAACCTCAATATGTCTT+TGG 0.273402 7:+88879893 None:intergenic
TGACGATGAAGAAGAATAAA+AGG 0.287215 7:-88882707 MsG0780041258.01.T01:CDS
AGGAGGAACGTTTCGAGGTT+AGG 0.383195 7:-88882687 MsG0780041258.01.T01:CDS
TCAAACCTCAATATGTCTTT+GGG 0.414773 7:+88879894 None:intergenic
TGAGAGGAGGAGAAGGAAGA+AGG 0.463593 7:-88879543 MsG0780041258.01.T01:CDS
ATTTGTTGCTAGCTGAGCCT+TGG 0.469979 7:+88879309 None:intergenic
GGAGAGGGAAGCAGTATTCA+AGG 0.482087 7:-88879456 MsG0780041258.01.T01:CDS
AGACTGAGGGATCATTCTGC+TGG 0.487070 7:+88879917 None:intergenic
ATAAGAATGAGAGGAGGAGA+AGG 0.495494 7:-88879550 MsG0780041258.01.T01:CDS
AGTCTCCCAAAGACATATTG+AGG 0.501893 7:-88879899 MsG0780041258.01.T01:intron
ATAAAAGGAGGAACGTTTCG+AGG 0.510507 7:-88882692 MsG0780041258.01.T01:CDS
AGCAGTATTCAAGGAAAAGA+AGG 0.516229 7:-88879447 MsG0780041258.01.T01:CDS
GTTTCGAGGTTAGGTGGAAG+TGG 0.520904 7:-88882678 MsG0780041258.01.T01:CDS
ATGTTTAAGAAGACACGAAA+AGG 0.525206 7:-88879377 MsG0780041258.01.T01:CDS
AATTGCATACTTATGAGAGA+TGG 0.531431 7:+88882603 None:intergenic
AGAGAAAGAAAGAATGGAGA+GGG 0.531612 7:-88879471 MsG0780041258.01.T01:CDS
AGGACAAGGATAAGAATGAG+AGG 0.570238 7:-88879559 MsG0780041258.01.T01:CDS
TAGCGAAAGCATTAAGTGAA+AGG 0.574586 7:+88882655 None:intergenic
AGGAACGTTTCGAGGTTAGG+TGG 0.588198 7:-88882684 MsG0780041258.01.T01:CDS
GAATTTGAATGAAACTGAAG+AGG 0.591461 7:-88879579 MsG0780041258.01.T01:CDS
ACAAGGATAAGAATGAGAGG+AGG 0.593062 7:-88879556 MsG0780041258.01.T01:CDS
TCAGTGGTGCACACTTGTCA+TGG 0.594312 7:-88880030 MsG0780041258.01.T01:intron
AAGAGAAAGAAAGAATGGAG+AGG 0.596634 7:-88879472 MsG0780041258.01.T01:CDS
GAATGAAACTGAAGAGGACA+AGG 0.598466 7:-88879573 MsG0780041258.01.T01:CDS
ATATGTCTTTGGGAGACTGA+GGG 0.609227 7:+88879904 None:intergenic
AATATGTCTTTGGGAGACTG+AGG 0.627209 7:+88879903 None:intergenic
AATGCCAAATCCAATAACAG+TGG 0.654269 7:-88882633 MsG0780041258.01.T01:CDS
CGATGAAGAAGAATAAAAGG+AGG 0.667747 7:-88882704 MsG0780041258.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAATCAAAATAATA+TGG + Chr7:88879627-88879646 None:intergenic 10.0%
!! TTATATATTTAAAAACATGA+TGG + Chr7:88879742-88879761 None:intergenic 10.0%
!!! GATTTTTTTTTTAAAAAAGA+AGG + Chr7:88881637-88881656 None:intergenic 10.0%
!!! TTTTGTAAATGTATATTTTT+AGG - Chr7:88880547-88880566 MsG0780041258.01.T01:intron 10.0%
!!! TTTTTAAATATATAAGCAAT+TGG - Chr7:88879747-88879766 MsG0780041258.01.T01:intron 10.0%
!! AACAATTTGATGAATAATTT+GGG + Chr7:88880488-88880507 None:intergenic 15.0%
!! ATGAATCTTTAAATGAATTA+GGG - Chr7:88881389-88881408 MsG0780041258.01.T01:intron 15.0%
!! TAACAATTTGATGAATAATT+TGG + Chr7:88880489-88880508 None:intergenic 15.0%
!! TTTAAAAAAAAAATCCAATG+AGG - Chr7:88881642-88881661 MsG0780041258.01.T01:intron 15.0%
!!! ATTATCTTCATTGAATATTT+TGG - Chr7:88881734-88881753 MsG0780041258.01.T01:intron 15.0%
!!! TATTTTGATTATTTTTGTGA+TGG - Chr7:88879630-88879649 MsG0780041258.01.T01:intron 15.0%
!!! TTTAAAACTACTAAGATTAT+TGG - Chr7:88880582-88880601 MsG0780041258.01.T01:intron 15.0%
!!! TTTTTTTAAAAAAGAAGGAA+GGG + Chr7:88881632-88881651 None:intergenic 15.0%
!!! TTTTTTTTAAAAAAGAAGGA+AGG + Chr7:88881633-88881652 None:intergenic 15.0%
!! AATTTGAATTCCATAAATAG+CGG + Chr7:88882298-88882317 None:intergenic 20.0%
!! ACAAAAAAACTTCTTTCATT+TGG - Chr7:88881817-88881836 MsG0780041258.01.T01:intron 20.0%
!! ATTAATTGGTACACTATTAT+GGG + Chr7:88880261-88880280 None:intergenic 20.0%
!! CATGAATCTTTAAATGAATT+AGG - Chr7:88881388-88881407 MsG0780041258.01.T01:intron 20.0%
!! GAAAAATAGATCTAGAAATA+GGG - Chr7:88879962-88879981 MsG0780041258.01.T01:CDS 20.0%
!! GACATATTAAAATATAGCAA+CGG + Chr7:88882018-88882037 None:intergenic 20.0%
!! GTTAATGTACCTAAATATAT+TGG - Chr7:88880676-88880695 MsG0780041258.01.T01:intron 20.0%
!! TAATGTTCGAAAATCTTAAA+TGG + Chr7:88881925-88881944 None:intergenic 20.0%
!! TAGTAATAATAACAATCTCA+AGG + Chr7:88882216-88882235 None:intergenic 20.0%
!! TATTAATTGGTACACTATTA+TGG + Chr7:88880262-88880281 None:intergenic 20.0%
!! TCAATTCTGTATTTCATAAT+AGG + Chr7:88882719-88882738 None:intergenic 20.0%
!! TGAAAAAAAAAAACTTCTCA+CGG + Chr7:88881172-88881191 None:intergenic 20.0%
!! TTTAGATGATTATTTGGTTA+TGG - Chr7:88881504-88881523 MsG0780041258.01.T01:intron 20.0%
!!! AGATTATAATTTGTTGTGAA+AGG + Chr7:88880236-88880255 None:intergenic 20.0%
!!! ATTATAATTTGTTGTGAAAG+GGG + Chr7:88880234-88880253 None:intergenic 20.0%
!!! CATCACTTTTAATATGATTT+GGG - Chr7:88881965-88881984 MsG0780041258.01.T01:intron 20.0%
!!! GATTATAATTTGTTGTGAAA+GGG + Chr7:88880235-88880254 None:intergenic 20.0%
!!! TGAAATTAGGTTTTTTCATT+GGG - Chr7:88880126-88880145 MsG0780041258.01.T01:intron 20.0%
!!! TGGTGCTTTTTAATTTAAAA+TGG + Chr7:88881206-88881225 None:intergenic 20.0%
!!! TTGTTATTATTACTATCTAC+AGG - Chr7:88882221-88882240 MsG0780041258.01.T01:intron 20.0%
!!! TTTTATTTCAATGTTTGAGA+AGG - Chr7:88882342-88882361 MsG0780041258.01.T01:intron 20.0%
! AAAGAAAAAAGAATGGAAGT+AGG - Chr7:88881053-88881072 MsG0780041258.01.T01:intron 25.0%
! AATACAAATAGTCCAAACAA+AGG + Chr7:88880178-88880197 None:intergenic 25.0%
! AGAAAAAGAGAAAGAAAGAA+TGG - Chr7:88882589-88882608 MsG0780041258.01.T01:intron 25.0%
! AGTAAACATCAATCAATGTT+AGG + Chr7:88882425-88882444 None:intergenic 25.0%
! ATGGTATATATTCAGAATCA+GGG + Chr7:88881948-88881967 None:intergenic 25.0%
! CCAAATCATATTAAAAGTGA+TGG + Chr7:88881967-88881986 None:intergenic 25.0%
! GGAAAAATAGATCTAGAAAT+AGG - Chr7:88879961-88879980 MsG0780041258.01.T01:CDS 25.0%
! GTTCTATTATAATTCATACC+TGG - Chr7:88880907-88880926 MsG0780041258.01.T01:intron 25.0%
! TAACATTAAGCTACATAGTT+TGG - Chr7:88881126-88881145 MsG0780041258.01.T01:intron 25.0%
! TCTTCAGAACAAATTACAAT+TGG + Chr7:88881849-88881868 None:intergenic 25.0%
!! AAATTTCTCTTTTATGACAC+AGG + Chr7:88882324-88882343 None:intergenic 25.0%
!! ATACAGAATTGAACATCTTT+TGG - Chr7:88882727-88882746 MsG0780041258.01.T01:CDS 25.0%
!! ATTATTGGTCTAAATGTGAA+GGG - Chr7:88880597-88880616 MsG0780041258.01.T01:intron 25.0%
!! CTTTGGTAAAGTTTTACTAT+TGG - Chr7:88881680-88881699 MsG0780041258.01.T01:intron 25.0%
!! TCAGCATCTTTCATAATTTT+TGG - Chr7:88879497-88879516 MsG0780041258.01.T01:CDS 25.0%
!!! ATTTTGAAAAAAACAACGCA+AGG + Chr7:88881779-88881798 None:intergenic 25.0%
!!! CCATCACTTTTAATATGATT+TGG - Chr7:88881964-88881983 MsG0780041258.01.T01:intron 25.0%
!!! CTGAAATTAGGTTTTTTCAT+TGG - Chr7:88880125-88880144 MsG0780041258.01.T01:intron 25.0%
!!! GACTTCTAATTTCTGAAATT+AGG - Chr7:88880113-88880132 MsG0780041258.01.T01:intron 25.0%
!!! GCTATATTTTAATATGTCAG+TGG - Chr7:88882020-88882039 MsG0780041258.01.T01:intron 25.0%
!!! TTATAATTTGTTGTGAAAGG+GGG + Chr7:88880233-88880252 None:intergenic 25.0%
!!! TTTTTTTGTTCCACCTTTTT+GGG - Chr7:88880438-88880457 MsG0780041258.01.T01:intron 25.0%
AATTACGTTACTCTGTGTTA+AGG + Chr7:88879812-88879831 None:intergenic 30.0%
AATTGCATACTTATGAGAGA+TGG + Chr7:88879466-88879485 None:intergenic 30.0%
ACAAAGAAACAAAAGCAGAA+AGG + Chr7:88880786-88880805 None:intergenic 30.0%
AGATGTTGGAAGAAAATGAA+AGG + Chr7:88880758-88880777 None:intergenic 30.0%
AGGACAATAACTATATACCA+TGG + Chr7:88880735-88880754 None:intergenic 30.0%
ATCAAACCTCAATATGTCTT+TGG + Chr7:88882176-88882195 None:intergenic 30.0%
ATGTTTAAGAAGACACGAAA+AGG - Chr7:88882689-88882708 MsG0780041258.01.T01:CDS 30.0%
ATTACGTTACTCTGTGTTAA+GGG + Chr7:88879811-88879830 None:intergenic 30.0%
ATTATGCTAAAATCGTAGTG+AGG - Chr7:88880856-88880875 MsG0780041258.01.T01:intron 30.0%
ATTGCTGCAATTTAATGCTT+GGG - Chr7:88879582-88879601 MsG0780041258.01.T01:intron 30.0%
CAAAGAAACAAAAGCAGAAA+GGG + Chr7:88880785-88880804 None:intergenic 30.0%
GAATTTGAATGAAACTGAAG+AGG - Chr7:88882487-88882506 MsG0780041258.01.T01:intron 30.0%
GATGGTATATATTCAGAATC+AGG + Chr7:88881949-88881968 None:intergenic 30.0%
GGGATTCAAAGAAAAAAGAA+TGG - Chr7:88881046-88881065 MsG0780041258.01.T01:intron 30.0%
GTAAAAAAGATTGCCCAAAA+AGG + Chr7:88880454-88880473 None:intergenic 30.0%
GTGCTCTTTAGATGATTATT+TGG - Chr7:88881498-88881517 MsG0780041258.01.T01:intron 30.0%
GTTTGTGTTAATCATGTCTA+TGG - Chr7:88881435-88881454 MsG0780041258.01.T01:intron 30.0%
TAGAACCTAAATGAGTCTTA+CGG + Chr7:88880893-88880912 None:intergenic 30.0%
TATTGCTGCAATTTAATGCT+TGG - Chr7:88879581-88879600 MsG0780041258.01.T01:CDS 30.0%
TCAAACCTCAATATGTCTTT+GGG + Chr7:88882175-88882194 None:intergenic 30.0%
TGACGATGAAGAAGAATAAA+AGG - Chr7:88879359-88879378 MsG0780041258.01.T01:CDS 30.0%
TGATGAATAATTTGGGAAAG+AGG + Chr7:88880481-88880500 None:intergenic 30.0%
TTAGTCATAGAAGTTGTCTA+CGG + Chr7:88881263-88881282 None:intergenic 30.0%
TTATGCTAAAATCGTAGTGA+GGG - Chr7:88880857-88880876 MsG0780041258.01.T01:intron 30.0%
TTTAGGTACATTAACCATGT+CGG + Chr7:88880671-88880690 None:intergenic 30.0%
! CTTTTCTTCTGCTCATATTT+GGG + Chr7:88879685-88879704 None:intergenic 30.0%
! GATTATTGGTCTAAATGTGA+AGG - Chr7:88880596-88880615 MsG0780041258.01.T01:intron 30.0%
! TTCTGAAAGTCATGATGAAA+AGG - Chr7:88879995-88880014 MsG0780041258.01.T01:CDS 30.0%
! TTTTGTGTTACCGCTATTTA+TGG - Chr7:88882285-88882304 MsG0780041258.01.T01:intron 30.0%
!! AAATTAAAAAGCACCAAGCA+CGG - Chr7:88881210-88881229 MsG0780041258.01.T01:intron 30.0%
!! CTATTTTTCCAGATTTTCTG+CGG + Chr7:88879951-88879970 None:intergenic 30.0%
!!! CTTTTAAAAGCATTCACAAG+TGG - Chr7:88880930-88880949 MsG0780041258.01.T01:intron 30.0%
!!! CTTTTTTTGTTCCACCTTTT+TGG - Chr7:88880437-88880456 MsG0780041258.01.T01:intron 30.0%
!!! GATTATTTTTGTGATGGATG+AGG - Chr7:88879636-88879655 MsG0780041258.01.T01:intron 30.0%
AAAAAGATTGCCCAAAAAGG+TGG + Chr7:88880451-88880470 None:intergenic 35.0%
AAATCTTAAATGGTCGTGAG+AGG + Chr7:88881915-88881934 None:intergenic 35.0%
AACGGAACTTCAGTTAGATA+TGG + Chr7:88882000-88882019 None:intergenic 35.0%
AAGAGAAAGAAAGAATGGAG+AGG - Chr7:88882594-88882613 MsG0780041258.01.T01:intron 35.0%
AAGCTCGCAGAAAAACTTTA+CGG - Chr7:88882660-88882679 MsG0780041258.01.T01:CDS 35.0%
AATATGAGCAGAAGAAAAGC+TGG - Chr7:88879686-88879705 MsG0780041258.01.T01:intron 35.0%
AATGCCAAATCCAATAACAG+TGG - Chr7:88879433-88879452 MsG0780041258.01.T01:CDS 35.0%
ACATTAACCATGTCGGATTT+GGG + Chr7:88880664-88880683 None:intergenic 35.0%
ACTATACTTATTCGCCTCAT+TGG + Chr7:88881659-88881678 None:intergenic 35.0%
AGAGAAAGAAAGAATGGAGA+GGG - Chr7:88882595-88882614 MsG0780041258.01.T01:intron 35.0%
AGCAGTATTCAAGGAAAAGA+AGG - Chr7:88882619-88882638 MsG0780041258.01.T01:CDS 35.0%
AGTCTCTATTTCAAAGGAGA+AGG - Chr7:88881015-88881034 MsG0780041258.01.T01:intron 35.0%
ATATGAGCAGAAGAAAAGCT+GGG - Chr7:88879687-88879706 MsG0780041258.01.T01:intron 35.0%
ATCAGCATATCTGACGTATT+AGG + Chr7:88882257-88882276 None:intergenic 35.0%
CAGAAGATAGATCTTGAATC+TGG - Chr7:88880054-88880073 MsG0780041258.01.T01:intron 35.0%
CCCAAGAAAACAAAGTTACA+CGG + Chr7:88881602-88881621 None:intergenic 35.0%
CGATGAAGAAGAATAAAAGG+AGG - Chr7:88879362-88879381 MsG0780041258.01.T01:CDS 35.0%
GATCTTGAATCTGGAAAAAG+AGG - Chr7:88880063-88880082 MsG0780041258.01.T01:intron 35.0%
GCTCATATTTGGGTATGTAA+GGG + Chr7:88879675-88879694 None:intergenic 35.0%
GGCGAATAAGTATAGTACTT+TGG - Chr7:88881663-88881682 MsG0780041258.01.T01:intron 35.0%
GTACGCGCTAATGTATTAAT+TGG + Chr7:88880275-88880294 None:intergenic 35.0%
GTATCCACTGTTATTGGATT+TGG + Chr7:88879440-88879459 None:intergenic 35.0%
TACATTAACCATGTCGGATT+TGG + Chr7:88880665-88880684 None:intergenic 35.0%
TATGCTAAAATCGTAGTGAG+GGG - Chr7:88880858-88880877 MsG0780041258.01.T01:intron 35.0%
TCCTGATGATTTAGCTACTT+TGG - Chr7:88881473-88881492 MsG0780041258.01.T01:intron 35.0%
TGAAAGTCATGATGAAAAGG+AGG - Chr7:88879998-88880017 MsG0780041258.01.T01:CDS 35.0%
TGCTCATATTTGGGTATGTA+AGG + Chr7:88879676-88879695 None:intergenic 35.0%
TGGATTGTATCCACTGTTAT+TGG + Chr7:88879446-88879465 None:intergenic 35.0%
TGGTCAAGTCTCTATTTCAA+AGG - Chr7:88881009-88881028 MsG0780041258.01.T01:intron 35.0%
TGTTGGAAGAAAATGAAAGG+AGG + Chr7:88880755-88880774 None:intergenic 35.0%
! AGCGAAGCACCAATATATTT+AGG + Chr7:88880688-88880707 None:intergenic 35.0%
! AGCGATTTTGTATGAGAAGA+AGG - Chr7:88880025-88880044 MsG0780041258.01.T01:CDS 35.0%
! ATTGTTGCTTCGGCAAATTA+GGG - Chr7:88880821-88880840 MsG0780041258.01.T01:intron 35.0%
! CCTGATGATTTAGCTACTTT+GGG - Chr7:88881474-88881493 MsG0780041258.01.T01:intron 35.0%
! CTGATGATTTAGCTACTTTG+GGG - Chr7:88881475-88881494 MsG0780041258.01.T01:intron 35.0%
! GCTTTTCTTCTGCTCATATT+TGG + Chr7:88879686-88879705 None:intergenic 35.0%
! TGATGATTTAGCTACTTTGG+GGG - Chr7:88881476-88881495 MsG0780041258.01.T01:intron 35.0%
! TTAATATTTTCCTCCTTGCG+AGG - Chr7:88881364-88881383 MsG0780041258.01.T01:intron 35.0%
! TTTGTTTCTTTGTCCAACGT+CGG - Chr7:88880793-88880812 MsG0780041258.01.T01:intron 35.0%
!! GAAGGATAGTGCTTTTAGTT+TGG - Chr7:88882541-88882560 MsG0780041258.01.T01:intron 35.0%
!! GTTGGTAATTCTAGTTTCCA+TGG - Chr7:88880715-88880734 MsG0780041258.01.T01:intron 35.0%
!! TAGCGAAAGCATTAAGTGAA+AGG + Chr7:88879414-88879433 None:intergenic 35.0%
!! TGTGAATGCTTTTAAAAGCC+AGG + Chr7:88880928-88880947 None:intergenic 35.0%
!!! CCGTGTAACTTTGTTTTCTT+GGG - Chr7:88881599-88881618 MsG0780041258.01.T01:intron 35.0%
!!! TCCGTGTAACTTTGTTTTCT+TGG - Chr7:88881598-88881617 MsG0780041258.01.T01:intron 35.0%
!!! TTCTTTTTCAGAGAAGCAGA+GGG - Chr7:88882068-88882087 MsG0780041258.01.T01:intron 35.0%
!!! TTTCTTTTTCAGAGAAGCAG+AGG - Chr7:88882067-88882086 MsG0780041258.01.T01:intron 35.0%
AAAGAATGGAAGTAGGCCAT+AGG - Chr7:88881060-88881079 MsG0780041258.01.T01:intron 40.0%
AAATCACGTGAGCTAACTAG+AGG + Chr7:88881713-88881732 None:intergenic 40.0%
AACACAAACTCGCCAATCTA+AGG + Chr7:88881424-88881443 None:intergenic 40.0%
AACATGCTTCATGCTTCCTA+TGG + Chr7:88881079-88881098 None:intergenic 40.0%
AAGCCGAGCAACAAATGTTA+AGG + Chr7:88880420-88880439 None:intergenic 40.0%
ACAAGGATAAGAATGAGAGG+AGG - Chr7:88882510-88882529 MsG0780041258.01.T01:intron 40.0%
ACAGTAAATGGGCCTTTGTT+TGG - Chr7:88880163-88880182 MsG0780041258.01.T01:intron 40.0%
ACATAATTCGTGGTTCGCTT+CGG + Chr7:88880390-88880409 None:intergenic 40.0%
AGATACGGTAACACTCTTAG+TGG - Chr7:88880629-88880648 MsG0780041258.01.T01:intron 40.0%
AGCTCGCAGAAAAACTTTAC+GGG - Chr7:88882661-88882680 MsG0780041258.01.T01:CDS 40.0%
AGCTGGGATATTGGATAGAA+TGG - Chr7:88879703-88879722 MsG0780041258.01.T01:intron 40.0%
AGGACAAGGATAAGAATGAG+AGG - Chr7:88882507-88882526 MsG0780041258.01.T01:intron 40.0%
AGTCTCCCAAAGACATATTG+AGG - Chr7:88882167-88882186 MsG0780041258.01.T01:intron 40.0%
AGTTACACGGAAACAACACT+AGG + Chr7:88881589-88881608 None:intergenic 40.0%
ATAAAAGGAGGAACGTTTCG+AGG - Chr7:88879374-88879393 MsG0780041258.01.T01:CDS 40.0%
ATAAGAATGAGAGGAGGAGA+AGG - Chr7:88882516-88882535 MsG0780041258.01.T01:intron 40.0%
CAAAGGAGAAGGTAGATGTT+GGG - Chr7:88881026-88881045 MsG0780041258.01.T01:intron 40.0%
CACAGAGTAACGTAATTCGT+TGG - Chr7:88879815-88879834 MsG0780041258.01.T01:intron 40.0%
CAGAAGAAAAGCTGGGATAT+TGG - Chr7:88879694-88879713 MsG0780041258.01.T01:intron 40.0%
CCCAAAGTAGCTAAATCATC+AGG + Chr7:88881477-88881496 None:intergenic 40.0%
CTGCAATTTAATGCTTGGGT+TGG - Chr7:88879586-88879605 MsG0780041258.01.T01:intron 40.0%
GAAGGGAGTCTAACAAGATA+CGG - Chr7:88880614-88880633 MsG0780041258.01.T01:intron 40.0%
GAATGAAACTGAAGAGGACA+AGG - Chr7:88882493-88882512 MsG0780041258.01.T01:intron 40.0%
GATAAATACAGCGAATTCGC+TGG + Chr7:88881291-88881310 None:intergenic 40.0%
GATACGGTAACACTCTTAGT+GGG - Chr7:88880630-88880649 MsG0780041258.01.T01:intron 40.0%
GCATATCTGACGTATTAGGT+AGG + Chr7:88882253-88882272 None:intergenic 40.0%
GGGTTCTTCTTTCCTTAGAT+TGG - Chr7:88881409-88881428 MsG0780041258.01.T01:intron 40.0%
GTTACACGGAAACAACACTA+GGG + Chr7:88881588-88881607 None:intergenic 40.0%
TAAAGATTCATGTCCTCGCA+AGG + Chr7:88881380-88881399 None:intergenic 40.0%
TACGCATCCTTCAAAGAATC+CGG + Chr7:88880341-88880360 None:intergenic 40.0%
TATTTGGTTATGGAGCAGTC+TGG - Chr7:88881514-88881533 MsG0780041258.01.T01:intron 40.0%
TCAAAGGAGAAGGTAGATGT+TGG - Chr7:88881025-88881044 MsG0780041258.01.T01:intron 40.0%
TCAGAATGTTGATCTCTCTG+AGG - Chr7:88882390-88882409 MsG0780041258.01.T01:intron 40.0%
TCAGAGAGATCAACATTCTG+AGG + Chr7:88882391-88882410 None:intergenic 40.0%
TGTCTATGGAGAAGCTAACA+AGG - Chr7:88881449-88881468 MsG0780041258.01.T01:intron 40.0%
TTACACGGAAACAACACTAG+GGG + Chr7:88881587-88881606 None:intergenic 40.0%
TTTGTATGAGAAGAAGGCAG+AGG - Chr7:88880031-88880050 MsG0780041258.01.T01:intron 40.0%
! AATATGTCTTTGGGAGACTG+AGG + Chr7:88882166-88882185 None:intergenic 40.0%
! ATATGTCTTTGGGAGACTGA+GGG + Chr7:88882165-88882184 None:intergenic 40.0%
! CATTGTTGCTTCGGCAAATT+AGG - Chr7:88880820-88880839 MsG0780041258.01.T01:intron 40.0%
! GTCGGTATTCATTGTTGCTT+CGG - Chr7:88880811-88880830 MsG0780041258.01.T01:intron 40.0%
! GTGCCTTAACATTTGTTGCT+CGG - Chr7:88880414-88880433 MsG0780041258.01.T01:intron 40.0%
! TTGTGAAAGGGGGTATGATT+AGG + Chr7:88880223-88880242 None:intergenic 40.0%
!! ACGTAATTCGTTGGTTCCAT+TGG - Chr7:88879824-88879843 MsG0780041258.01.T01:intron 40.0%
!! CATCTTTTGGAGACTATCCA+AGG - Chr7:88882740-88882759 MsG0780041258.01.T01:CDS 40.0%
AAGCAACGACTCTATGACAG+AGG + Chr7:88881542-88881561 None:intergenic 45.0%
ACCATGCAGCAACAAATCAG+TGG - Chr7:88880984-88881003 MsG0780041258.01.T01:intron 45.0%
AGGCACAGTCACATAATTCG+TGG + Chr7:88880400-88880419 None:intergenic 45.0%
ATTTACTGTCCAGACTCCAG+AGG + Chr7:88880152-88880171 None:intergenic 45.0%
CGTTACTCTGTGTTAAGGGA+CGG + Chr7:88879807-88879826 None:intergenic 45.0%
CTGGAGTCTGGACAGTAAAT+GGG - Chr7:88880152-88880171 MsG0780041258.01.T01:intron 45.0%
CTTCAAAGAATCCGGTACGT+GGG + Chr7:88880333-88880352 None:intergenic 45.0%
GCAACAATGAATACCGACGT+TGG + Chr7:88880809-88880828 None:intergenic 45.0%
GCGATCCGTAAGACTCATTT+AGG - Chr7:88880885-88880904 MsG0780041258.01.T01:intron 45.0%
TAGTGAACCCAAATCCGACA+TGG - Chr7:88880654-88880673 MsG0780041258.01.T01:intron 45.0%
TTCAAAGAATCCGGTACGTG+GGG + Chr7:88880332-88880351 None:intergenic 45.0%
TTCTGCAACAGCAAGTAGAG+AGG + Chr7:88882470-88882489 None:intergenic 45.0%
! ATTTGTTGCTAGCTGAGCCT+TGG + Chr7:88882760-88882779 None:intergenic 45.0%
! CAGATTTTCTGCGGATACTC+CGG + Chr7:88879942-88879961 None:intergenic 45.0%
! GCATAGTCGGTACGCTATTT+TGG + Chr7:88880304-88880323 None:intergenic 45.0%
! GCGAATTTTCACGCGAATTC+CGG + Chr7:88879906-88879925 None:intergenic 45.0%
! TCTGGAGTCTGGACAGTAAA+TGG - Chr7:88880151-88880170 MsG0780041258.01.T01:intron 45.0%
!! AGATCAACATTCTGAGGCTC+AGG + Chr7:88882385-88882404 None:intergenic 45.0%
!! CTGATTTGTTGCTGCATGGT+AGG + Chr7:88880984-88881003 None:intergenic 45.0%
!! TTAAAAAGCACCAAGCACGG+TGG - Chr7:88881213-88881232 MsG0780041258.01.T01:intron 45.0%
!!! AGGTTTTTTCATTGGGCCTC+TGG - Chr7:88880133-88880152 MsG0780041258.01.T01:intron 45.0%
!!! CGGTACGCTATTTTGGTTTG+CGG + Chr7:88880297-88880316 None:intergenic 45.0%
ACCAATTCGCGGTTCTCCAA+TGG + Chr7:88879843-88879862 None:intergenic 50.0%
ACGGCGACGACATTATTACG+TGG + Chr7:88881244-88881263 None:intergenic 50.0%
AGACTGAGGGATCATTCTGC+TGG + Chr7:88882152-88882171 None:intergenic 50.0%
AGATTCATGTCCTCGCAAGG+AGG + Chr7:88881377-88881396 None:intergenic 50.0%
AGGAACGTTTCGAGGTTAGG+TGG - Chr7:88879382-88879401 MsG0780041258.01.T01:CDS 50.0%
AGGAGGAACGTTTCGAGGTT+AGG - Chr7:88879379-88879398 MsG0780041258.01.T01:CDS 50.0%
CCACGTACCGGATTCTTTGA+AGG - Chr7:88880331-88880350 MsG0780041258.01.T01:intron 50.0%
CCTTCAAAGAATCCGGTACG+TGG + Chr7:88880334-88880353 None:intergenic 50.0%
CTTCTTCCTCCTAACAGCAG+CGG + Chr7:88880091-88880110 None:intergenic 50.0%
GCAGAAAGGGAGAGAGATGT+TGG + Chr7:88880772-88880791 None:intergenic 50.0%
GCAGCAACAAATCAGTGGCT+TGG - Chr7:88880989-88881008 MsG0780041258.01.T01:intron 50.0%
GGAGAGGGAAGCAGTATTCA+AGG - Chr7:88882610-88882629 MsG0780041258.01.T01:intron 50.0%
GTTTCGAGGTTAGGTGGAAG+TGG - Chr7:88879388-88879407 MsG0780041258.01.T01:CDS 50.0%
TCAAAGAATCCGGTACGTGG+GGG + Chr7:88880331-88880350 None:intergenic 50.0%
TCAGTGGTGCACACTTGTCA+TGG - Chr7:88882036-88882055 MsG0780041258.01.T01:intron 50.0%
TCCATTGGAGAACCGCGAAT+TGG - Chr7:88879839-88879858 MsG0780041258.01.T01:intron 50.0%
TGAGAGGAGGAGAAGGAAGA+AGG - Chr7:88882523-88882542 MsG0780041258.01.T01:intron 50.0%
! CGGAGTATCCGCAGAAAATC+TGG - Chr7:88879940-88879959 MsG0780041258.01.T01:CDS 50.0%
!! GCCACTGATTTGTTGCTGCA+TGG + Chr7:88880988-88881007 None:intergenic 50.0%
!! TACGCGGAAGTACCGTGAAT+CGG + Chr7:88879875-88879894 None:intergenic 50.0%
AAAGAGGAGCCGCTGCTGTT+AGG - Chr7:88880079-88880098 MsG0780041258.01.T01:intron 55.0%
AATTCCGGCGAACCAGTACG+CGG + Chr7:88879891-88879910 None:intergenic 55.0%
ACGTGAGCTAACTAGAGGCG+AGG + Chr7:88881708-88881727 None:intergenic 55.0%
CAAAGAATCCGGTACGTGGG+GGG + Chr7:88880330-88880349 None:intergenic 55.0%
GGTGCTTCGCTAGAGCTTGT+TGG - Chr7:88880697-88880716 MsG0780041258.01.T01:intron 55.0%
GTTCGCTTCGGTACGTGGTA+CGG + Chr7:88880378-88880397 None:intergenic 55.0%
TATGCATACCCCCCACGTAC+CGG - Chr7:88880319-88880338 MsG0780041258.01.T01:intron 55.0%
TTCACGGTACTTCCGCGTAC+TGG - Chr7:88879876-88879895 MsG0780041258.01.T01:intron 55.0%
TTCGCTTCGGTACGTGGTAC+GGG + Chr7:88880377-88880396 None:intergenic 55.0%
TTCGGTACGTGGTACGGGTT+CGG + Chr7:88880372-88880391 None:intergenic 55.0%
! ACGTGGGGGGTATGCATAGT+CGG + Chr7:88880317-88880336 None:intergenic 55.0%
!! TTCATTGGGCCTCTGGAGTC+TGG - Chr7:88880140-88880159 MsG0780041258.01.T01:intron 55.0%
ATTCGCAGCCGCAAGCGTAC+CGG - Chr7:88879920-88879939 MsG0780041258.01.T01:CDS 60.0%
CGGATACTCCGGTACGCTTG+CGG + Chr7:88879931-88879950 None:intergenic 60.0%
CGTGGATAGACCACCGTGCT+TGG + Chr7:88881226-88881245 None:intergenic 60.0%
GGTTCGCGCGAACCAATTCG+CGG + Chr7:88879854-88879873 None:intergenic 60.0%
TCGGTACGTGGTACGGGTTC+GGG + Chr7:88880371-88880390 None:intergenic 60.0%
TCGTGGTTCGCTTCGGTACG+TGG + Chr7:88880383-88880402 None:intergenic 60.0%
! GGTTCGCGCGAACCGATTCA+CGG - Chr7:88879860-88879879 MsG0780041258.01.T01:intron 60.0%
!! ACTTCCGCGTACTGGTTCGC+CGG - Chr7:88879884-88879903 MsG0780041258.01.T01:intron 60.0%
GAGGAGCCGCTGCTGTTAGG+AGG - Chr7:88880082-88880101 MsG0780041258.01.T01:intron 65.0%
GTGGTACGGGTTCGGGTACG+CGG + Chr7:88880364-88880383 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 88879304 88882784 88879304 ID=MsG0780041258.01;Name=MsG0780041258.01
Chr7 mRNA 88879304 88882784 88879304 ID=MsG0780041258.01.T01;Parent=MsG0780041258.01;Name=MsG0780041258.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|3|0|205
Chr7 exon 88882613 88882784 88882613 ID=MsG0780041258.01.T01:exon:12262;Parent=MsG0780041258.01.T01
Chr7 exon 88879900 88880048 88879900 ID=MsG0780041258.01.T01:exon:12261;Parent=MsG0780041258.01.T01
Chr7 exon 88879304 88879600 88879304 ID=MsG0780041258.01.T01:exon:12260;Parent=MsG0780041258.01.T01
Chr7 CDS 88882613 88882784 88882613 ID=MsG0780041258.01.T01:cds;Parent=MsG0780041258.01.T01
Chr7 CDS 88879900 88880048 88879900 ID=MsG0780041258.01.T01:cds;Parent=MsG0780041258.01.T01
Chr7 CDS 88879304 88879600 88879304 ID=MsG0780041258.01.T01:cds;Parent=MsG0780041258.01.T01
Gene Sequence

>MsG0780041258.01.T01

ATGACGAAAAATAATGATGAACGCAACGATAATCATGAAGATAAGCAGAAACAATTGACGATGAAGAAGAATAAAAGGAGGAACGTTTCGAGGTTAGGTGGAAGTGGCCTTTCACTTAATGCTTTCGCTAATGCCAAATCCAATAACAGTGGATACAATCCATCTCTCATAATGGTGCACACTTGTCATGGATTTGTTTTTTCTTTTTCAGAGAAGCAGAGGGAGATATACAACAATGCTAAGAAAGTGAAGAAGTATAAGAAGATGCTAAAGCAGCAAAACCAGCAGAATGATCCCTCAGTCTCCCAAAGACATATTGAGAATTTGAATGAAACTGAAGAGGACAAGGATAAGAATGAGAGGAGGAGAAGGAAGAAGGATAGTGCTTTTAGTTTGGAAGAACTATACAAGAAGCAGCATGAAGAAAAAGAGAAAGAAAGAATGGAGAGGGAAGCAGTATTCAAGGAAAAGAAGGAACAGAGAGAAAAAGCTGAAGCTCGCAGAAAAACTTTACGGGAAAAAATGTTTAAGAAGACACGAAAAGGACAACCTATTATGAAATACAGAATTGAACATCTTTTGGAGACTATCCAAGGCTCAGCTAGCAACAAATCCTGA

Protein sequence

>MsG0780041258.01.T01

MTKNNDERNDNHEDKQKQLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLIMVHTCHGFVFSFSEKQREIYNNAKKVKKYKKMLKQQNQQNDPSVSQRHIENLNETEEDKDKNERRRRKKDSAFSLEELYKKQHEEKEKERMEREAVFKEKKEQREKAEARRKTLREKMFKKTRKGQPIMKYRIEHLLETIQGSASNKS*