AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011371.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011371.01.T01 MTR_2g103130 95.105 143 6 1 2 144 17 158 4.71e-99 281
MsG0280011371.01.T01 MTR_4g088905 45.161 124 64 2 19 139 261 383 8.04e-29 110
MsG0280011371.01.T01 MTR_4g088905 46.078 102 54 1 38 139 154 254 1.34e-27 106
MsG0280011371.01.T01 MTR_4g088905 47.312 93 47 2 48 139 400 491 2.54e-24 97.4
MsG0280011371.01.T01 MTR_7g079520 38.532 109 66 1 27 135 66 173 2.95e-25 95.1
MsG0280011371.01.T01 MTR_4g016930 37.113 97 57 2 40 133 196 291 4.25e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011371.01.T01 AT3G15660 66.667 147 44 3 2 144 23 168 9.72e-69 205
MsG0280011371.01.T01 AT3G15660 66.667 147 44 3 2 144 23 168 9.72e-69 205
MsG0280011371.01.T01 AT4G04950 47.059 102 53 1 39 140 152 252 1.17e-29 112
MsG0280011371.01.T01 AT4G04950 46.729 107 54 2 35 139 276 381 2.66e-26 103
MsG0280011371.01.T01 AT4G04950 45.545 101 54 1 39 139 389 488 2.55e-25 100
MsG0280011371.01.T01 AT3G54900 42.017 119 63 3 27 141 55 171 5.29e-28 102
MsG0280011371.01.T01 AT2G38270 41.584 101 55 2 40 137 193 292 2.51e-20 84.7

Find 28 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACTAGTTCCTGTTATTA+TGG 0.213298 2:-83172842 MsG0280011371.01.T01:CDS
AAAATGTTCCTAGCACTTAA+AGG 0.239296 2:+83171244 None:intergenic
TTCATTAAGGGAGAGTTTAT+TGG 0.294164 2:-83170077 MsG0280011371.01.T01:CDS
ACTAATAAAATTGAGAATTC+TGG 0.294307 2:-83172761 MsG0280011371.01.T01:CDS
CCCTTCATGTAAATCATAAC+AGG 0.387480 2:+83172599 None:intergenic
AATCCACACTGTGGGAAATC+AGG 0.415306 2:+83172572 None:intergenic
GTATCTCATTCCATAATAAC+AGG 0.425034 2:+83172832 None:intergenic
TCCTGTTATGATTTACATGA+AGG 0.434713 2:-83172600 MsG0280011371.01.T01:CDS
TTTGTCAAGTATTATTGAGC+AGG 0.435419 2:-83172732 MsG0280011371.01.T01:intron
CAGATGTTCCTTTAAGTGCT+AGG 0.438137 2:-83171252 MsG0280011371.01.T01:CDS
CTTGTAGAGTGGTGAGTTGA+AGG 0.456905 2:-83169950 MsG0280011371.01.T01:intron
AAGCAGTAAAAGCACAACTA+AGG 0.522251 2:-83169904 MsG0280011371.01.T01:exon
ATTAAGGGAGAGTTTATTGG+TGG 0.524548 2:-83170074 MsG0280011371.01.T01:CDS
TAAAAGCACAACTAAGGTGA+TGG 0.525816 2:-83169898 MsG0280011371.01.T01:three_prime_UTR
ATGAAAACTTGTGGAAATGT+TGG 0.528223 2:+83170095 None:intergenic
CCTGTTATGATTTACATGAA+GGG 0.540704 2:-83172599 MsG0280011371.01.T01:CDS
TATTGTTCTTAGTATGCACC+AGG 0.565729 2:-83170045 MsG0280011371.01.T01:intron
AAAAGCACAACTAAGGTGAT+GGG 0.568881 2:-83169897 MsG0280011371.01.T01:three_prime_UTR
TGGAATGAGATACACAACTA+AGG 0.585500 2:-83172822 MsG0280011371.01.T01:CDS
GGTGATGGGATTTAAAAGAG+AGG 0.605653 2:-83169883 MsG0280011371.01.T01:three_prime_UTR
TAATAATGTACAGGATGTCA+AGG 0.615496 2:-83172627 MsG0280011371.01.T01:intron
GAGAACTAAATCCACACTGT+GGG 0.625350 2:+83172564 None:intergenic
TCTCCCTTAATGAAAACTTG+TGG 0.625424 2:+83170086 None:intergenic
GTACCTGATTTCCCACAGTG+TGG 0.627551 2:-83172575 MsG0280011371.01.T01:CDS
TTTGAAGTCATCATGTGTGT+CGG 0.650291 2:+83172787 None:intergenic
AGCATGAACAAACTTACTGT+AGG 0.672377 2:+83171189 None:intergenic
ACAGATTGCATCGAACAAGT+CGG 0.673003 2:+83169851 None:intergenic
AGAGAACTAAATCCACACTG+TGG 0.712972 2:+83172563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAAAAAATTAAGTTAA+AGG - Chr2:83171508-83171527 MsG0280011371.01.T01:intron 10.0%
!! ATTCTCATTGTTAAAAATTA+TGG - Chr2:83172050-83172069 MsG0280011371.01.T01:intron 15.0%
!! TAATCTGATCTTAATATATT+TGG + Chr2:83171631-83171650 None:intergenic 15.0%
!!! ACATGCATTTAATTTTATAT+TGG - Chr2:83172101-83172120 MsG0280011371.01.T01:intron 15.0%
!!! GAAACAAAAACAATTTTAAA+GGG - Chr2:83171075-83171094 MsG0280011371.01.T01:intron 15.0%
!!! GATTTTTTTGCTTATATTTT+AGG - Chr2:83172205-83172224 MsG0280011371.01.T01:intron 15.0%
!!! GTTAAAGTTTTAAAACAATA+TGG - Chr2:83170062-83170081 MsG0280011371.01.T01:CDS 15.0%
!!! GTTTTTTTTATTATGTTGAA+TGG - Chr2:83171003-83171022 MsG0280011371.01.T01:intron 15.0%
!!! TCAATTGTTTAATTTACTTA+TGG - Chr2:83171198-83171217 MsG0280011371.01.T01:intron 15.0%
!!! TTAATTTTGATATCCTTTAA+TGG - Chr2:83171739-83171758 MsG0280011371.01.T01:intron 15.0%
!!! TTTTTGCTTATAAAAAAAGA+CGG + Chr2:83171932-83171951 None:intergenic 15.0%
!! ACTAATAAAATTGAGAATTC+TGG - Chr2:83169837-83169856 MsG0280011371.01.T01:three_prime_UTR 20.0%
!! AGGGAAAAGTAAATTATAAT+TGG + Chr2:83172403-83172422 None:intergenic 20.0%
!! CAATTATTAAGCTGTTAAAA+GGG + Chr2:83172422-83172441 None:intergenic 20.0%
!! CACAATAATAACATAAAAGT+TGG - Chr2:83172147-83172166 MsG0280011371.01.T01:intron 20.0%
!! TCAATTATTAAGCTGTTAAA+AGG + Chr2:83172423-83172442 None:intergenic 20.0%
!!! AAAACACATTTGAAACTTAA+AGG + Chr2:83171176-83171195 None:intergenic 20.0%
!!! GAATTCTCAATTTTATTAGT+TGG + Chr2:83169837-83169856 None:intergenic 20.0%
!!! GGAAACAAAAACAATTTTAA+AGG - Chr2:83171074-83171093 MsG0280011371.01.T01:intron 20.0%
!!! TATCTTTGTATTAGATTTTC+TGG - Chr2:83172803-83172822 MsG0280011371.01.T01:CDS 20.0%
!!! TATTTTCTTTGCATTTAAAG+TGG - Chr2:83172307-83172326 MsG0280011371.01.T01:intron 20.0%
!!! TTTTTGCTTATATTTTAGGA+CGG - Chr2:83172209-83172228 MsG0280011371.01.T01:intron 20.0%
! AAACTATACGAGAAACTATT+AGG - Chr2:83170809-83170828 MsG0280011371.01.T01:intron 25.0%
! ACACGATTGATATTTGAAAA+TGG + Chr2:83171720-83171739 None:intergenic 25.0%
! ATAATGTTTGTAGAAAAGTG+GGG + Chr2:83170561-83170580 None:intergenic 25.0%
! CATAATGTTTGTAGAAAAGT+GGG + Chr2:83170562-83170581 None:intergenic 25.0%
! GATCATTATGATTAAATTGC+AGG + Chr2:83171117-83171136 None:intergenic 25.0%
! GGTGTGAAATATTGTTAAAT+AGG + Chr2:83172628-83172647 None:intergenic 25.0%
! TATTCACAGTAAATTTCTGT+AGG + Chr2:83171224-83171243 None:intergenic 25.0%
! TTAATGGCTATGAAATTCAA+TGG - Chr2:83171755-83171774 MsG0280011371.01.T01:intron 25.0%
! TTGAATTTCATAGCCATTAA+AGG + Chr2:83171755-83171774 None:intergenic 25.0%
!! ATTTCCACAAGTTTTCATTA+AGG - Chr2:83172508-83172527 MsG0280011371.01.T01:intron 25.0%
!! TTTCCACAAGTTTTCATTAA+GGG - Chr2:83172509-83172528 MsG0280011371.01.T01:intron 25.0%
!!! ATAATTTTTTGTGTTCTCCT+TGG - Chr2:83172000-83172019 MsG0280011371.01.T01:intron 25.0%
!!! ATGAAGGTTTATTGTTTTGA+TGG - Chr2:83169927-83169946 MsG0280011371.01.T01:CDS 25.0%
!!! CAATTTTAAAGGGTTTACAT+AGG - Chr2:83171085-83171104 MsG0280011371.01.T01:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + Chr2:83170525-83170544 None:intergenic 25.0%
AAAATGTTCCTAGCACTTAA+AGG + Chr2:83171357-83171376 None:intergenic 30.0%
AAATTGATCAACTCTTGCAA+TGG + Chr2:83172586-83172605 None:intergenic 30.0%
AACCAATACTTAGTGATTTG+AGG - Chr2:83171976-83171995 MsG0280011371.01.T01:intron 30.0%
AACCATTAGAAAGGATTTAG+AGG + Chr2:83170383-83170402 None:intergenic 30.0%
AATAAGGAGAATAGATCAGA+TGG - Chr2:83170747-83170766 MsG0280011371.01.T01:intron 30.0%
AATTGATCAACTCTTGCAAT+GGG + Chr2:83172585-83172604 None:intergenic 30.0%
ACATATATCAACAACGTACA+AGG + Chr2:83172246-83172265 None:intergenic 30.0%
ACATGAGATTACATAAACAC+AGG + Chr2:83170985-83171004 None:intergenic 30.0%
ATATAATTTCTCAGGTAGCA+AGG + Chr2:83170116-83170135 None:intergenic 30.0%
ATGAAAACTTGTGGAAATGT+TGG + Chr2:83172506-83172525 None:intergenic 30.0%
ATGATCTTCAGATTATTGAC+AGG + Chr2:83171789-83171808 None:intergenic 30.0%
CCATAATGTTTGTAGAAAAG+TGG + Chr2:83170563-83170582 None:intergenic 30.0%
CCTGTTATGATTTACATGAA+GGG - Chr2:83169999-83170018 MsG0280011371.01.T01:intron 30.0%
CTAACTAGTTCCTGTTATTA+TGG - Chr2:83169756-83169775 MsG0280011371.01.T01:three_prime_UTR 30.0%
GAAATTATATCCTCTGAATC+TGG - Chr2:83170126-83170145 MsG0280011371.01.T01:intron 30.0%
GATTTCAACATATCTAGTTG+TGG - Chr2:83171875-83171894 MsG0280011371.01.T01:intron 30.0%
GCTCTATCAAAAACCATATT+TGG - Chr2:83170343-83170362 MsG0280011371.01.T01:intron 30.0%
GTATCTCATTCCATAATAAC+AGG + Chr2:83169769-83169788 None:intergenic 30.0%
TAACCTGCACAAACTTATAT+AGG - Chr2:83171144-83171163 MsG0280011371.01.T01:intron 30.0%
TAATAATGTACAGGATGTCA+AGG - Chr2:83169971-83169990 MsG0280011371.01.T01:intron 30.0%
TAATGTTTGTAGAAAAGTGG+GGG + Chr2:83170560-83170579 None:intergenic 30.0%
TACCTCAAATCACTAAGTAT+TGG + Chr2:83171981-83172000 None:intergenic 30.0%
TATACGAGAAACTATTAGGA+AGG - Chr2:83170813-83170832 MsG0280011371.01.T01:intron 30.0%
TCCTGTTATGATTTACATGA+AGG - Chr2:83169998-83170017 MsG0280011371.01.T01:intron 30.0%
TCTACATGAGAATTCTATGA+AGG - Chr2:83169911-83169930 MsG0280011371.01.T01:exon 30.0%
TGCTTATAAAAAAAGACGGA+GGG + Chr2:83171928-83171947 None:intergenic 30.0%
TGTGCTTATGTGATTTGAAA+AGG - Chr2:83170199-83170218 MsG0280011371.01.T01:intron 30.0%
TGTTAGAAGAGTAGATCAAA+TGG + Chr2:83170458-83170477 None:intergenic 30.0%
TTCAGAGGATATAATTTCTC+AGG + Chr2:83170124-83170143 None:intergenic 30.0%
TTCATTAAGGGAGAGTTTAT+TGG - Chr2:83172521-83172540 MsG0280011371.01.T01:intron 30.0%
TTGAAGAGGATGAAATCAAA+AGG + Chr2:83171047-83171066 None:intergenic 30.0%
TTGCTTATAAAAAAAGACGG+AGG + Chr2:83171929-83171948 None:intergenic 30.0%
TTTCCATGAAACTTATTCCA+AGG + Chr2:83172020-83172039 None:intergenic 30.0%
TTTGTCAAGTATTATTGAGC+AGG - Chr2:83169866-83169885 MsG0280011371.01.T01:three_prime_UTR 30.0%
! AATGAGTTGGAGAAAAAACA+TGG - Chr2:83170847-83170866 MsG0280011371.01.T01:intron 30.0%
! ATTTGTTGAATGTAGCTGAT+GGG - Chr2:83170589-83170608 MsG0280011371.01.T01:intron 30.0%
! ATTTTCAAACATAGTAGCAC+CGG - Chr2:83172363-83172382 MsG0280011371.01.T01:intron 30.0%
! CTACCATCTTTTCTACTATA+GGG + Chr2:83170675-83170694 None:intergenic 30.0%
! GTTTCTCGTATAGTTTTTCT+AGG + Chr2:83170805-83170824 None:intergenic 30.0%
! TACCATCTTTTCTACTATAG+GGG + Chr2:83170674-83170693 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG - Chr2:83170529-83170548 MsG0280011371.01.T01:intron 30.0%
! TCTACCATCTTTTCTACTAT+AGG + Chr2:83170676-83170695 None:intergenic 30.0%
! TCTTTGCATTTAAAGTGGTA+TGG - Chr2:83172312-83172331 MsG0280011371.01.T01:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - Chr2:83170867-83170886 MsG0280011371.01.T01:intron 30.0%
! TTTACAGCATTTTTCACTTC+AGG + Chr2:83171387-83171406 None:intergenic 30.0%
! TTTGATTTCATCCTCTTCAA+CGG - Chr2:83171047-83171066 MsG0280011371.01.T01:intron 30.0%
!! AATTTGTTGAATGTAGCTGA+TGG - Chr2:83170588-83170607 MsG0280011371.01.T01:intron 30.0%
!! CCACTTTTCTACAAACATTA+TGG - Chr2:83170560-83170579 MsG0280011371.01.T01:intron 30.0%
!! GTGACTTGTTAATAATGTAC+AGG - Chr2:83169962-83169981 MsG0280011371.01.T01:intron 30.0%
!! TGAATATGACTTAGCTTTAC+TGG - Chr2:83171271-83171290 MsG0280011371.01.T01:intron 30.0%
AAACTAGACATAGGTGGTTT+CGG - Chr2:83170695-83170714 MsG0280011371.01.T01:intron 35.0%
AACCCCTATAGTAGAAAAGA+TGG - Chr2:83170669-83170688 MsG0280011371.01.T01:intron 35.0%
ACGACATTAGATAGAGAGTT+GGG - Chr2:83170644-83170663 MsG0280011371.01.T01:intron 35.0%
AGATCAAATGGAGAAGAGTA+AGG + Chr2:83170446-83170465 None:intergenic 35.0%
AGATGGTAGAAACTAGACAT+AGG - Chr2:83170686-83170705 MsG0280011371.01.T01:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + Chr2:83170536-83170555 None:intergenic 35.0%
AGCATGAACAAACTTACTGT+AGG + Chr2:83171412-83171431 None:intergenic 35.0%
AGGATGAAATCAAAAGGCAA+GGG + Chr2:83171041-83171060 None:intergenic 35.0%
AGTAAGGTTAAAAGAGGTAG+AGG + Chr2:83170430-83170449 None:intergenic 35.0%
ATTAAGGGAGAGTTTATTGG+TGG - Chr2:83172524-83172543 MsG0280011371.01.T01:intron 35.0%
CAGTAGAGAAACCATTAGAA+AGG + Chr2:83170392-83170411 None:intergenic 35.0%
CATCCTATATAAGTTTGTGC+AGG + Chr2:83171150-83171169 None:intergenic 35.0%
CCCTTCATGTAAATCATAAC+AGG + Chr2:83170002-83170021 None:intergenic 35.0%
CTTCTAACAACGACATCTAT+GGG - Chr2:83170469-83170488 MsG0280011371.01.T01:intron 35.0%
CTTTCTAATGGTTTCTCTAC+TGG - Chr2:83170390-83170409 MsG0280011371.01.T01:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + Chr2:83170511-83170530 None:intergenic 35.0%
GACCTCTAAATCCTTTCTAA+TGG - Chr2:83170378-83170397 MsG0280011371.01.T01:intron 35.0%
GACTTGTGGATTCTGTAATA+AGG - Chr2:83170731-83170750 MsG0280011371.01.T01:intron 35.0%
GAGAAGAGTAAGGTTAAAAG+AGG + Chr2:83170436-83170455 None:intergenic 35.0%
GCACAAACTTATATAGGATG+CGG - Chr2:83171150-83171169 MsG0280011371.01.T01:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG - Chr2:83170834-83170853 MsG0280011371.01.T01:intron 35.0%
TATTGTTCTTAGTATGCACC+AGG - Chr2:83172553-83172572 MsG0280011371.01.T01:CDS 35.0%
TCTCCCTTAATGAAAACTTG+TGG + Chr2:83172515-83172534 None:intergenic 35.0%
TCTCCTTGGAATAAGTTTCA+TGG - Chr2:83172014-83172033 MsG0280011371.01.T01:intron 35.0%
TCTTCTAACAACGACATCTA+TGG - Chr2:83170468-83170487 MsG0280011371.01.T01:intron 35.0%
TGGAATGAGATACACAACTA+AGG - Chr2:83169776-83169795 MsG0280011371.01.T01:three_prime_UTR 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + Chr2:83170516-83170535 None:intergenic 35.0%
TTGATATATGTACATGCGTC+TGG - Chr2:83172255-83172274 MsG0280011371.01.T01:intron 35.0%
! AAAAGCACAACTAAGGTGAT+GGG - Chr2:83172701-83172720 MsG0280011371.01.T01:intron 35.0%
! AAGCAGTAAAAGCACAACTA+AGG - Chr2:83172694-83172713 MsG0280011371.01.T01:intron 35.0%
! ATGGGTTTATTGACTAGATG+GGG - Chr2:83170607-83170626 MsG0280011371.01.T01:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + Chr2:83170359-83170378 None:intergenic 35.0%
! GATGGGTTTATTGACTAGAT+GGG - Chr2:83170606-83170625 MsG0280011371.01.T01:intron 35.0%
! TAAAAGCACAACTAAGGTGA+TGG - Chr2:83172700-83172719 MsG0280011371.01.T01:intron 35.0%
! TACAGTAAGTTTGTTCATGC+TGG - Chr2:83171411-83171430 MsG0280011371.01.T01:intron 35.0%
! TTAGTTGTGCTTTTACTGCT+TGG + Chr2:83172695-83172714 None:intergenic 35.0%
! TTTGAAGTCATCATGTGTGT+CGG + Chr2:83169814-83169833 None:intergenic 35.0%
!! TGATGGGTTTATTGACTAGA+TGG - Chr2:83170605-83170624 MsG0280011371.01.T01:intron 35.0%
!! TGGTTTTTGATAGAGCACTA+TGG + Chr2:83170339-83170358 None:intergenic 35.0%
!!! GTTTCTCTACTGGTTTTCTT+AGG - Chr2:83170400-83170419 MsG0280011371.01.T01:intron 35.0%
!!! TGCTTATATTTTAGGACGGA+GGG - Chr2:83172213-83172232 MsG0280011371.01.T01:intron 35.0%
!!! TTGCTTATATTTTAGGACGG+AGG - Chr2:83172212-83172231 MsG0280011371.01.T01:intron 35.0%
ACAGATTGCATCGAACAAGT+CGG + Chr2:83172750-83172769 None:intergenic 40.0%
AGAGAACTAAATCCACACTG+TGG + Chr2:83170038-83170057 None:intergenic 40.0%
CAGATGTTCCTTTAAGTGCT+AGG - Chr2:83171346-83171365 MsG0280011371.01.T01:intron 40.0%
CGACATTAGATAGAGAGTTG+GGG - Chr2:83170645-83170664 MsG0280011371.01.T01:intron 40.0%
GACGACATTAGATAGAGAGT+TGG - Chr2:83170643-83170662 MsG0280011371.01.T01:intron 40.0%
GAGAACTAAATCCACACTGT+GGG + Chr2:83170037-83170056 None:intergenic 40.0%
GAGGATGAAATCAAAAGGCA+AGG + Chr2:83171042-83171061 None:intergenic 40.0%
GGATTTAGAGGTCAATGAGT+TGG + Chr2:83170371-83170390 None:intergenic 40.0%
TAAAGGGTTTACATAGGTGC+TGG - Chr2:83171091-83171110 MsG0280011371.01.T01:intron 40.0%
TATTTCACACCCTTGTAGAG+TGG - Chr2:83172637-83172656 MsG0280011371.01.T01:intron 40.0%
TGACTGCAGAGAAAGAACAT+GGG + Chr2:83172479-83172498 None:intergenic 40.0%
TGGTAGAAACTAGACATAGG+TGG - Chr2:83170689-83170708 MsG0280011371.01.T01:intron 40.0%
TGTTGTTGTAGCTGATGTCA+TGG - Chr2:83170954-83170973 MsG0280011371.01.T01:intron 40.0%
TTCAACTCACCACTCTACAA+GGG + Chr2:83172649-83172668 None:intergenic 40.0%
TTCATCCTCTTCAACGGAAA+AGG - Chr2:83171053-83171072 MsG0280011371.01.T01:intron 40.0%
TTGAAAAGGTAGACTCAGAG+TGG - Chr2:83170213-83170232 MsG0280011371.01.T01:intron 40.0%
! AAGTGCTAGGAACATTTTGC+AGG - Chr2:83171359-83171378 MsG0280011371.01.T01:intron 40.0%
! AATCTGGACCAGTCTTTTCA+TGG - Chr2:83170142-83170161 MsG0280011371.01.T01:intron 40.0%
! TAAGCCTTATCCCACTAAGT+GGG + Chr2:83170917-83170936 None:intergenic 40.0%
! TGTTTCCTTTTCCGTTGAAG+AGG + Chr2:83171061-83171080 None:intergenic 40.0%
!! GGTGATGGGATTTAAAAGAG+AGG - Chr2:83172715-83172734 MsG0280011371.01.T01:intron 40.0%
AAAAGGTAGACTCAGAGTGG+AGG - Chr2:83170216-83170235 MsG0280011371.01.T01:intron 45.0%
AATCCACACTGTGGGAAATC+AGG + Chr2:83170029-83170048 None:intergenic 45.0%
AGTCAGATCACTAGAGGTAG+GGG - Chr2:83170775-83170794 MsG0280011371.01.T01:intron 45.0%
CAGCTCTACCATGAAAAGAC+TGG + Chr2:83170153-83170172 None:intergenic 45.0%
CTTCAACTCACCACTCTACA+AGG + Chr2:83172650-83172669 None:intergenic 45.0%
GAGTCAGATCACTAGAGGTA+GGG - Chr2:83170774-83170793 MsG0280011371.01.T01:intron 45.0%
GGAGAATAGATCAGATGGAG+AGG - Chr2:83170752-83170771 MsG0280011371.01.T01:intron 45.0%
GTGACTGCAGAGAAAGAACA+TGG + Chr2:83172480-83172499 None:intergenic 45.0%
TCTTGCAATGGGAACTAACC+TGG + Chr2:83172574-83172593 None:intergenic 45.0%
TGTTCTTTCTCTGCAGTCAC+TGG - Chr2:83172480-83172499 MsG0280011371.01.T01:intron 45.0%
! AAAGACTGGTCCAGATTCAG+AGG + Chr2:83170139-83170158 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr2:83170290-83170309 MsG0280011371.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr2:83170309-83170290 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr2:83170289-83170308 MsG0280011371.01.T01:intron 45.0%
! CTAAGCCTTATCCCACTAAG+TGG + Chr2:83170918-83170937 None:intergenic 45.0%
! CTTGTAGAGTGGTGAGTTGA+AGG - Chr2:83172648-83172667 MsG0280011371.01.T01:intron 45.0%
!!! AATGTTAATTTTAAAAAAAT+AGG + Chr2:83171478-83171497 None:intergenic 5.0%
ATTGGCAGCACCAGCATTTC+CGG + Chr2:83172385-83172404 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + Chr2:83170934-83170915 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr2:83170294-83170313 MsG0280011371.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr2:83170313-83170294 None:intergenic 50.0%
GAGAGGAGTCAGATCACTAG+AGG - Chr2:83170769-83170788 MsG0280011371.01.T01:intron 50.0%
GCACGTAGAGAGAAGACTTG+TGG - Chr2:83170717-83170736 MsG0280011371.01.T01:intron 50.0%
GGAGTCAGATCACTAGAGGT+AGG - Chr2:83170773-83170792 MsG0280011371.01.T01:intron 50.0%
GTACCTGATTTCCCACAGTG+TGG - Chr2:83170023-83170042 MsG0280011371.01.T01:intron 50.0%
! CATAGTAGCACCGGAAATGC+TGG - Chr2:83172372-83172391 MsG0280011371.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - Chr2:83170288-83170307 MsG0280011371.01.T01:intron 50.0%
! GGTATGGTTGTGTCACTGTG+TGG - Chr2:83172328-83172347 MsG0280011371.01.T01:intron 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr2:83170302-83170321 MsG0280011371.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr2:83170903-83170922 MsG0280011371.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr2:83170922-83170903 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr2:83170910-83170929 MsG0280011371.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + Chr2:83170929-83170910 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr2:83170904-83170923 MsG0280011371.01.T01:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr2:83170923-83170904 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 83169750 83172870 83169750 ID=MsG0280011371.01;Name=MsG0280011371.01
Chr2 mRNA 83169750 83172870 83169750 ID=MsG0280011371.01.T01;Parent=MsG0280011371.01;Name=MsG0280011371.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.75|0.6|1|0.5|0.4|5|168|144
Chr2 exon 83169750 83169965 83169750 ID=MsG0280011371.01.T01:exon:12699;Parent=MsG0280011371.01.T01
Chr2 exon 83170046 83170124 83170046 ID=MsG0280011371.01.T01:exon:12698;Parent=MsG0280011371.01.T01
Chr2 exon 83171202 83171271 83171202 ID=MsG0280011371.01.T01:exon:12697;Parent=MsG0280011371.01.T01
Chr2 exon 83172537 83172636 83172537 ID=MsG0280011371.01.T01:exon:12696;Parent=MsG0280011371.01.T01
Chr2 exon 83172733 83172870 83172733 ID=MsG0280011371.01.T01:exon:12695;Parent=MsG0280011371.01.T01
Chr2 CDS 83172733 83172870 83172733 ID=MsG0280011371.01.T01:cds;Parent=MsG0280011371.01.T01
Chr2 CDS 83172537 83172636 83172537 ID=MsG0280011371.01.T01:cds;Parent=MsG0280011371.01.T01
Chr2 CDS 83171202 83171271 83171202 ID=MsG0280011371.01.T01:cds;Parent=MsG0280011371.01.T01
Chr2 CDS 83170046 83170124 83170046 ID=MsG0280011371.01.T01:cds;Parent=MsG0280011371.01.T01
Chr2 CDS 83169918 83169965 83169918 ID=MsG0280011371.01.T01:cds;Parent=MsG0280011371.01.T01
Chr2 three_prime_UTR 83169750 83169917 83169750 ID=MsG0280011371.01.T01:three_prime_utr;Parent=MsG0280011371.01.T01
Gene Sequence

>MsG0280011371.01.T01

TTGCAGCTAACTAGTTCCTGTTATTATGGAATGAGATACACAACTAAGGTGTCTGATGATACCGACACACATGATGACTTCAAACCAACTAATAAAATTGAGAATTCTGGAACTTCTTTGTCAAGTATTATTGAGCAGGATGTCAAGGATAATCCTGTTATGATTTACATGAAGGGTGTACCTGATTTCCCACAGTGTGGATTTAGTTCTCTTGCAGTTAAAGTTTTAAAACAATATGATGTTCCTTTAAGTGCTAGGAACATTTTGCAGGATCCTGAAGTGAAAAATGCTGTAAAAGCCTACAGTAATCACTGGCCAACATTTCCACAAGTTTTCATTAAGGGAGAGTTTATTGGTGGATCAGATATTGTTCTTAGTATGCACCAGAGTGGTGAGTTGAAGGAAAAGCTTAAAGATGTTGTGTCCAAGCAGTAA

Protein sequence

>MsG0280011371.01.T01

LQLTSSCYYGMRYTTKVSDDTDTHDDFKPTNKIENSGTSLSSIIEQDVKDNPVMIYMKGVPDFPQCGFSSLAVKVLKQYDVPLSARNILQDPEVKNAVKAYSNHWPTFPQVFIKGEFIGGSDIVLSMHQSGELKEKLKDVVSKQ*