AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000611.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000611.01.T01 MTR_1g011880 81.538 130 16 1 1 130 1 122 2.60e-59 179
MsG0180000611.01.T01 MTR_1g011880 100.000 84 0 0 1 84 1 84 7.47e-57 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000611.01.T01 AT5G25450 64.615 130 38 1 1 130 1 122 1.47e-55 169
MsG0180000611.01.T01 AT4G32470 66.154 130 36 2 1 130 1 122 5.78e-55 168
MsG0180000611.01.T01 AT5G25450 64.615 130 22 1 1 130 1 106 2.35e-53 163
MsG0180000611.01.T01 AT4G32470 76.471 85 20 0 1 85 1 85 7.23e-44 139
MsG0180000611.01.T01 AT5G25450 76.471 85 20 0 1 85 1 85 1.01e-43 138

Find 47 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTGCCTTTATAATTTA+TGG 0.035401 1:-8675941 MsG0180000611.01.T01:three_prime_UTR
GTATTACGATTTGGATATTA+AGG 0.274133 1:-8679486 MsG0180000611.01.T01:CDS
TATTGGAATCATTTCTTGTT+TGG 0.281572 1:-8675890 MsG0180000611.01.T01:three_prime_UTR
AGCTTTGATGAATCCTTATA+TGG 0.292613 1:-8676029 MsG0180000611.01.T01:three_prime_UTR
ACCGTATTTGCGAAGACGTT+TGG 0.293147 1:+8679622 None:intergenic
GTATCTTCCTGAGGATCTTC+AGG 0.339636 1:-8679378 MsG0180000611.01.T01:CDS
ATGGAAGGGTTCGTTGATAC+AGG 0.347740 1:+8676149 None:intergenic
GTATGATCCGTATTACGATT+TGG 0.362212 1:-8679495 MsG0180000611.01.T01:CDS
GTGCTGTAAACTTCCCTCTT+GGG 0.363610 1:-8675992 MsG0180000611.01.T01:three_prime_UTR
GGTGCTGTAAACTTCCCTCT+TGG 0.368585 1:-8675993 MsG0180000611.01.T01:three_prime_UTR
TCCAAACGTCTTCGCAAATA+CGG 0.376472 1:-8679623 MsG0180000611.01.T01:intron
ATGCAAGCCATAAATTATAA+AGG 0.391641 1:+8675934 None:intergenic
GATACTACCCAATGCACTTA+TGG 0.397492 1:+8676130 None:intergenic
TTTGGTTGATGATGAAATCT+TGG 0.402911 1:-8676054 MsG0180000611.01.T01:three_prime_UTR
CGAGCATCAACAACCTCCTT+TGG 0.426514 1:+8679446 None:intergenic
ATGTACTCTACTATTGTGTT+TGG 0.431453 1:-8676072 MsG0180000611.01.T01:three_prime_UTR
CGAGCAGAGCGTGAAGCATT+GGG 0.452428 1:-8676181 MsG0180000611.01.T01:CDS
ACGAGCAGAGCGTGAAGCAT+TGG 0.467463 1:-8676182 MsG0180000611.01.T01:CDS
AGGAAGATACTCATGCTTCA+TGG 0.469418 1:+8679391 None:intergenic
TTAATATCCAAATCGTAATA+CGG 0.475035 1:+8679488 None:intergenic
AAAGATGGAGTGATTGTTCA+AGG 0.477184 1:-8675808 MsG0180000611.01.T01:three_prime_UTR
AGGCAATGCAAACACCATTC+AGG 0.479539 1:-8678284 MsG0180000611.01.T01:CDS
AACCCTTCCATAAGTGCATT+GGG 0.480215 1:-8676137 MsG0180000611.01.T01:exon
CTTCCTGAGGATCTTCAGGT+TGG 0.486843 1:-8679374 MsG0180000611.01.T01:intron
AGACTTACCAAAATAAAAGA+TGG 0.500296 1:-8675823 MsG0180000611.01.T01:three_prime_UTR
ATGATTCCAATAAAGACAAT+GGG 0.502666 1:+8675901 None:intergenic
GAACCCTTCCATAAGTGCAT+TGG 0.516854 1:-8676138 MsG0180000611.01.T01:exon
AATGATTCCAATAAAGACAA+TGG 0.521916 1:+8675900 None:intergenic
ACCATTCAGGAGCTACCTTC+AGG 0.525111 1:-8678271 MsG0180000611.01.T01:CDS
CATAAATTATAAAGGCAAGC+AGG 0.528208 1:+8675942 None:intergenic
TCCTGAAGGTAGCTCCTGAA+TGG 0.529425 1:+8678270 None:intergenic
GGCTTTGAATCGGCTTCCAA+AGG 0.532273 1:-8679462 MsG0180000611.01.T01:CDS
ATATTAAGGAGGCTTTGAAT+CGG 0.539685 1:-8679472 MsG0180000611.01.T01:CDS
TGGAAGGGTTCGTTGATACA+GGG 0.545179 1:+8676150 None:intergenic
AAACCAACCTGAAGATCCTC+AGG 0.545207 1:+8679371 None:intergenic
TTTGAATCGGCTTCCAAAGG+AGG 0.563776 1:-8679459 MsG0180000611.01.T01:CDS
CTACCCAATGCACTTATGGA+AGG 0.567459 1:+8676134 None:intergenic
TTACGATTTGGATATTAAGG+AGG 0.584001 1:-8679483 MsG0180000611.01.T01:CDS
ATAAAACAAGGCACTTACAA+AGG 0.606069 1:+8678239 None:intergenic
TACCCAATGCACTTATGGAA+GGG 0.614254 1:+8676135 None:intergenic
TTTATTAGAAAATGCCCAAG+AGG 0.624070 1:+8675978 None:intergenic
CAAAGGTCAGCATATCCTGA+AGG 0.627878 1:+8678256 None:intergenic
TTATTAGAAAATGCCCAAGA+GGG 0.630597 1:+8675979 None:intergenic
GGAAGGGTTCGTTGATACAG+GGG 0.637021 1:+8676151 None:intergenic
GCAGAGCGTGAAGCATTGGG+AGG 0.668632 1:-8676178 MsG0180000611.01.T01:CDS
GAAGCATGAGTATCTTCCTG+AGG 0.684541 1:-8679387 MsG0180000611.01.T01:CDS
ACTGTCAAACATATAAAACA+AGG 0.685232 1:+8678227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATGTTTAATAAAAAA+AGG + Chr1:8677491-8677510 None:intergenic 10.0%
!!! TCTTATTTTAATTTAAACTA+GGG - Chr1:8676881-8676900 MsG0180000611.01.T01:intron 10.0%
!!! TTCTTATTTTAATTTAAACT+AGG - Chr1:8676880-8676899 MsG0180000611.01.T01:intron 10.0%
!! AAATACAATTTCACAAATTA+GGG + Chr1:8676043-8676062 None:intergenic 15.0%
!! ATTTAACATGTTAACTAATA+GGG - Chr1:8678764-8678783 MsG0180000611.01.T01:intron 15.0%
!! TATTTAACATGTTAACTAAT+AGG - Chr1:8678763-8678782 MsG0180000611.01.T01:intron 15.0%
!!! AATACAAAATTGAATGTTTT+TGG - Chr1:8676259-8676278 MsG0180000611.01.T01:intron 15.0%
!!! CAATATTTTTGTAATTCATT+GGG - Chr1:8677993-8678012 MsG0180000611.01.T01:intron 15.0%
!!! GAAATGATTTTATAATTGTT+TGG + Chr1:8678881-8678900 None:intergenic 15.0%
!!! TATACAAATCTTTGAAAATA+AGG + Chr1:8677885-8677904 None:intergenic 15.0%
!!! TGTTTTGATATAACATTATA+TGG - Chr1:8677440-8677459 MsG0180000611.01.T01:intron 15.0%
!!! TTATTTTCAAAGATTTGTAT+AGG - Chr1:8677884-8677903 MsG0180000611.01.T01:intron 15.0%
!! AAAAAACGAAATGAAGATTT+AGG + Chr1:8676008-8676027 None:intergenic 20.0%
!! ATAAAATCTAACAAGTAAGA+TGG + Chr1:8679027-8679046 None:intergenic 20.0%
!! CAAATACAATTTCACAAATT+AGG + Chr1:8676044-8676063 None:intergenic 20.0%
!! GATAAGATTGAAGTATATTT+GGG + Chr1:8677575-8677594 None:intergenic 20.0%
!! TAAAATCTAACAAGTAAGAT+GGG + Chr1:8679026-8679045 None:intergenic 20.0%
!! TCAAATGAAGAAGAAAAAAA+AGG - Chr1:8677970-8677989 MsG0180000611.01.T01:intron 20.0%
!! TTAATATCCAAATCGTAATA+CGG + Chr1:8676107-8676126 None:intergenic 20.0%
!! TTAGTAGGTAAAATTTATCT+GGG + Chr1:8679149-8679168 None:intergenic 20.0%
!! TTTATTTCATTTCACATTTG+AGG - Chr1:8676735-8676754 MsG0180000611.01.T01:intron 20.0%
!!! GCAATATTTTTGTAATTCAT+TGG - Chr1:8677992-8678011 MsG0180000611.01.T01:intron 20.0%
!!! GTATTTGATTTGTGAAATTA+GGG - Chr1:8676057-8676076 MsG0180000611.01.T01:three_prime_UTR 20.0%
!!! TCATTTGATTACTATTTTCA+AGG + Chr1:8677958-8677977 None:intergenic 20.0%
!!! TGTATTTGATTTGTGAAATT+AGG - Chr1:8676056-8676075 MsG0180000611.01.T01:three_prime_UTR 20.0%
!!! TTAGATTTTATTTTGATGAG+TGG - Chr1:8679036-8679055 MsG0180000611.01.T01:intron 20.0%
! AAAAAAATGTGGTCCATATA+AGG + Chr1:8679579-8679598 None:intergenic 25.0%
! AAAATGGAACAAAAACAACA+AGG + Chr1:8678920-8678939 None:intergenic 25.0%
! AAATTTATTGAAAGTCCTTG+TGG - Chr1:8676596-8676615 MsG0180000611.01.T01:intron 25.0%
! AATAGAATCAAAAAACGAGA+TGG - Chr1:8676659-8676678 MsG0180000611.01.T01:intron 25.0%
! AATGATTCCAATAAAGACAA+TGG + Chr1:8679695-8679714 None:intergenic 25.0%
! ACACATTCTCATTTATTGTT+TGG + Chr1:8677013-8677032 None:intergenic 25.0%
! ACTGTCAAACATATAAAACA+AGG + Chr1:8677368-8677387 None:intergenic 25.0%
! AGACTTACCAAAATAAAAGA+TGG - Chr1:8679769-8679788 MsG0180000611.01.T01:five_prime_UTR 25.0%
! AGCAAATATGAACTAACAAA+AGG + Chr1:8677748-8677767 None:intergenic 25.0%
! ATAGAATCAAAAAACGAGAT+GGG - Chr1:8676660-8676679 MsG0180000611.01.T01:intron 25.0%
! ATGATTCCAATAAAGACAAT+GGG + Chr1:8679694-8679713 None:intergenic 25.0%
! ATGCAAGCCATAAATTATAA+AGG + Chr1:8679661-8679680 None:intergenic 25.0%
! CAAATATAGTAGCATAATTG+AGG - Chr1:8677655-8677674 MsG0180000611.01.T01:intron 25.0%
! CAATCTAAGCAATGTATTTA+AGG + Chr1:8677597-8677616 None:intergenic 25.0%
! CTTAGTAGGTAAAATTTATC+TGG + Chr1:8679150-8679169 None:intergenic 25.0%
! GAAATAAAATGCATTTCACA+AGG + Chr1:8676723-8676742 None:intergenic 25.0%
! GAAGATCTAAATATCTTGTT+TGG - Chr1:8677196-8677215 MsG0180000611.01.T01:intron 25.0%
! GGATAAGATTGAAGTATATT+TGG + Chr1:8677576-8677595 None:intergenic 25.0%
! TATTGGAATCATTTCTTGTT+TGG - Chr1:8679702-8679721 MsG0180000611.01.T01:exon 25.0%
! TCAAAGATTTGTATAGGAAA+AGG - Chr1:8677890-8677909 MsG0180000611.01.T01:intron 25.0%
! TTTCTATTCAACTAAATGAG+AGG - Chr1:8678820-8678839 MsG0180000611.01.T01:intron 25.0%
!! ATTTTACCCATTGTCTTTAT+TGG - Chr1:8679685-8679704 MsG0180000611.01.T01:CDS 25.0%
!! GTAAAATTTGAAGGGTTTTT+GGG + Chr1:8678114-8678133 None:intergenic 25.0%
!! GTATTACGATTTGGATATTA+AGG - Chr1:8676106-8676125 MsG0180000611.01.T01:three_prime_UTR 25.0%
!! TAAATATCTTGTTTGGTATG+TGG - Chr1:8677203-8677222 MsG0180000611.01.T01:intron 25.0%
!! TATTGCTATTACACTTAGTT+TGG + Chr1:8678952-8678971 None:intergenic 25.0%
!! TGCTACTATATTTGTTGAAA+TGG + Chr1:8677649-8677668 None:intergenic 25.0%
!! TGTGTTTGTATTGATAGAAA+TGG - Chr1:8676349-8676368 MsG0180000611.01.T01:intron 25.0%
!! TGTTTATCTATTGACTGAAA+TGG - Chr1:8676622-8676641 MsG0180000611.01.T01:intron 25.0%
!!! AATCACTCCATCTTTTATTT+TGG + Chr1:8679779-8679798 None:intergenic 25.0%
!!! GGATAGTTTTACAATAAAAG+TGG + Chr1:8676992-8677011 None:intergenic 25.0%
!!! GTAGCAAAAAGTGTTATTTT+TGG - Chr1:8679313-8679332 MsG0180000611.01.T01:intron 25.0%
!!! TTATATGGACCACATTTTTT+TGG - Chr1:8679578-8679597 MsG0180000611.01.T01:intron 25.0%
AAAAAGGCAATCAAGAAGTA+TGG + Chr1:8677475-8677494 None:intergenic 30.0%
AAAATAAGAAAAACTCCCAG+AGG + Chr1:8676870-8676889 None:intergenic 30.0%
AAAGTGAAACTTCTAGACTA+GGG + Chr1:8678137-8678156 None:intergenic 30.0%
AAATTGGTTGAAAACTGTTG+TGG - Chr1:8676325-8676344 MsG0180000611.01.T01:intron 30.0%
AATAGATAAACACATCCACA+AGG + Chr1:8676614-8676633 None:intergenic 30.0%
AATTCAGAAGCAATAGCTTA+AGG + Chr1:8678551-8678570 None:intergenic 30.0%
AATTGGTTGAAAACTGTTGT+GGG - Chr1:8676326-8676345 MsG0180000611.01.T01:intron 30.0%
ACATAGTTTCTGATGCATAT+GGG - Chr1:8678339-8678358 MsG0180000611.01.T01:intron 30.0%
AGTAACTAATTGTGTGATTG+TGG - Chr1:8677410-8677429 MsG0180000611.01.T01:intron 30.0%
ATCCCTTCACAAATTTCTTA+TGG + Chr1:8678654-8678673 None:intergenic 30.0%
ATGTACTCTACTATTGTGTT+TGG - Chr1:8679520-8679539 MsG0180000611.01.T01:intron 30.0%
CAAGTAAACGGTATTAAACA+TGG - Chr1:8678081-8678100 MsG0180000611.01.T01:intron 30.0%
CACCATAAGAAATTTGTGAA+GGG - Chr1:8678649-8678668 MsG0180000611.01.T01:intron 30.0%
CATAAATTATAAAGGCAAGC+AGG + Chr1:8679653-8679672 None:intergenic 30.0%
CATCACATATAGCAGTTATA+GGG + Chr1:8679350-8679369 None:intergenic 30.0%
CTAGATGAAGCTTGATAAAT+TGG - Chr1:8676309-8676328 MsG0180000611.01.T01:intron 30.0%
CTGCTTGCCTTTATAATTTA+TGG - Chr1:8679651-8679670 MsG0180000611.01.T01:CDS 30.0%
GAACACAAAAAACTCAACAA+TGG - Chr1:8675878-8675897 MsG0180000611.01.T01:three_prime_UTR 30.0%
GCTTAGATTGTTAGAAATCT+TGG - Chr1:8677607-8677626 MsG0180000611.01.T01:intron 30.0%
GGAAATAGAAGAAAAGAAAG+TGG + Chr1:8678435-8678454 None:intergenic 30.0%
GTAACTAATTGTGTGATTGT+GGG - Chr1:8677411-8677430 MsG0180000611.01.T01:intron 30.0%
TAAAGTGAAACTTCTAGACT+AGG + Chr1:8678138-8678157 None:intergenic 30.0%
TACATAGTTTCTGATGCATA+TGG - Chr1:8678338-8678357 MsG0180000611.01.T01:intron 30.0%
TAGAAAAAACACCTAGATCA+AGG + Chr1:8678482-8678501 None:intergenic 30.0%
TCATTGAATGGAATTCATGT+GGG - Chr1:8679101-8679120 MsG0180000611.01.T01:intron 30.0%
TTAACAGGGTATATGACTAA+TGG - Chr1:8678037-8678056 MsG0180000611.01.T01:intron 30.0%
TTAATACCGTTTACTTGTGT+GGG + Chr1:8678078-8678097 None:intergenic 30.0%
TTATTAGAAAATGCCCAAGA+GGG + Chr1:8679616-8679635 None:intergenic 30.0%
TTCATTGAATGGAATTCATG+TGG - Chr1:8679100-8679119 MsG0180000611.01.T01:intron 30.0%
TTGGATGCAGTTTAGATTTA+GGG - Chr1:8678405-8678424 MsG0180000611.01.T01:intron 30.0%
TTGTAGATCCAAAGAAAAAC+TGG - Chr1:8675919-8675938 MsG0180000611.01.T01:three_prime_UTR 30.0%
TTTAATACCGTTTACTTGTG+TGG + Chr1:8678079-8678098 None:intergenic 30.0%
TTTACAGCACCAAAAAAATG+TGG + Chr1:8679590-8679609 None:intergenic 30.0%
TTTATTAGAAAATGCCCAAG+AGG + Chr1:8679617-8679636 None:intergenic 30.0%
! AGCTTTGATGAATCCTTATA+TGG - Chr1:8679563-8679582 MsG0180000611.01.T01:intron 30.0%
! ATAAAACAAGGCACTTACAA+AGG + Chr1:8677356-8677375 None:intergenic 30.0%
! CTTGGGCATTTTCTAATAAA+TGG - Chr1:8679617-8679636 MsG0180000611.01.T01:intron 30.0%
! GATTTTCTGTGAACATACTT+TGG - Chr1:8677136-8677155 MsG0180000611.01.T01:intron 30.0%
! GGTAAAATTTGAAGGGTTTT+TGG + Chr1:8678115-8678134 None:intergenic 30.0%
! TCATTTTGCTTTCTCCAATT+TGG - Chr1:8676923-8676942 MsG0180000611.01.T01:intron 30.0%
! TCCAATTTGGAGGTATAAAA+AGG - Chr1:8676936-8676955 MsG0180000611.01.T01:intron 30.0%
! TCCTTTTTATACCTCCAAAT+TGG + Chr1:8676940-8676959 None:intergenic 30.0%
! TTACGATTTGGATATTAAGG+AGG - Chr1:8676109-8676128 MsG0180000611.01.T01:three_prime_UTR 30.0%
! TTCATATTTGCTAGAGTAGA+TGG - Chr1:8677756-8677775 MsG0180000611.01.T01:intron 30.0%
! TTTAGTAGAACTTTTGCACA+TGG - Chr1:8678379-8678398 MsG0180000611.01.T01:intron 30.0%
!! ATATTAAGGAGGCTTTGAAT+CGG - Chr1:8676120-8676139 MsG0180000611.01.T01:three_prime_UTR 30.0%
!! TTTGGTTGATGATGAAATCT+TGG - Chr1:8679538-8679557 MsG0180000611.01.T01:intron 30.0%
!!! GAAGCTATTTTGATTGGAAT+TGG - Chr1:8679489-8679508 MsG0180000611.01.T01:CDS 30.0%
AAAGAGTGAGTGCTAAAAAG+AGG + Chr1:8679082-8679101 None:intergenic 35.0%
AAAGATGGAGTGATTGTTCA+AGG - Chr1:8679784-8679803 MsG0180000611.01.T01:five_prime_UTR 35.0%
AAGACAATCAAGACAAGCAA+AGG + Chr1:8677549-8677568 None:intergenic 35.0%
AAGAGTGAGTGCTAAAAAGA+GGG + Chr1:8679081-8679100 None:intergenic 35.0%
AAGTGAAACTTCTAGACTAG+GGG + Chr1:8678136-8678155 None:intergenic 35.0%
AATAGCTTAAGGTCTTCAAC+TGG + Chr1:8678540-8678559 None:intergenic 35.0%
ACATATAGATGGGTCTTAAC+AGG - Chr1:8678022-8678041 MsG0180000611.01.T01:intron 35.0%
AGACTAGGGGTAAAATTTGA+AGG + Chr1:8678123-8678142 None:intergenic 35.0%
ATAGCTTAAGGTCTTCAACT+GGG + Chr1:8678539-8678558 None:intergenic 35.0%
ATCAAGGATACACACATAGA+TGG + Chr1:8678466-8678485 None:intergenic 35.0%
ATGATTGCTATGTCTTTAGC+AGG + Chr1:8678170-8678189 None:intergenic 35.0%
CATATAGATGGGTCTTAACA+GGG - Chr1:8678023-8678042 MsG0180000611.01.T01:intron 35.0%
CATTGAATGGAATTCATGTG+GGG - Chr1:8679102-8679121 MsG0180000611.01.T01:intron 35.0%
CCACCATAAGAAATTTGTGA+AGG - Chr1:8678648-8678667 MsG0180000611.01.T01:intron 35.0%
CCTGTCAAAAACAGATACAA+AGG + Chr1:8677291-8677310 None:intergenic 35.0%
CCTTCACAAATTTCTTATGG+TGG + Chr1:8678651-8678670 None:intergenic 35.0%
CTATTTCATTGTACTGTCAC+TGG - Chr1:8677036-8677055 MsG0180000611.01.T01:intron 35.0%
GAAAACAGAAATACAGACAC+AGG + Chr1:8677814-8677833 None:intergenic 35.0%
GACACATAATTCTACCATAG+TGG + Chr1:8678614-8678633 None:intergenic 35.0%
GACTAGGGGTAAAATTTGAA+GGG + Chr1:8678122-8678141 None:intergenic 35.0%
GCATCACATATAGCAGTTAT+AGG + Chr1:8679351-8679370 None:intergenic 35.0%
GCTAAAGACATAGCAATCAT+GGG - Chr1:8678170-8678189 MsG0180000611.01.T01:intron 35.0%
GTATGATCCGTATTACGATT+TGG - Chr1:8676097-8676116 MsG0180000611.01.T01:three_prime_UTR 35.0%
GTTGGATGCAGTTTAGATTT+AGG - Chr1:8678404-8678423 MsG0180000611.01.T01:intron 35.0%
TAATACCGTTTACTTGTGTG+GGG + Chr1:8678077-8678096 None:intergenic 35.0%
TATGTGTGTATCCTTGATCT+AGG - Chr1:8678468-8678487 MsG0180000611.01.T01:intron 35.0%
TCAACATTCACTCTCTTAGT+AGG + Chr1:8679164-8679183 None:intergenic 35.0%
TGATTGCTATGTCTTTAGCA+GGG + Chr1:8678169-8678188 None:intergenic 35.0%
TGCTAAAGACATAGCAATCA+TGG - Chr1:8678169-8678188 MsG0180000611.01.T01:intron 35.0%
TTGATGTCTATACAACCACA+AGG - Chr1:8676833-8676852 MsG0180000611.01.T01:intron 35.0%
! AACGCATTGATAAGTTGGAT+TGG - Chr1:8678298-8678317 MsG0180000611.01.T01:intron 35.0%
! ACTCTAACGCATTGATAAGT+TGG - Chr1:8678293-8678312 MsG0180000611.01.T01:intron 35.0%
! AGTTTGGATGGTGATGAAAA+TGG + Chr1:8678936-8678955 None:intergenic 35.0%
! CTTTTCAACCCACAATTTTC+AGG - Chr1:8679377-8679396 MsG0180000611.01.T01:CDS 35.0%
! GCTATTACACTTAGTTTGGA+TGG + Chr1:8678948-8678967 None:intergenic 35.0%
! TTTTGCTTTCTCCAATTTGG+AGG - Chr1:8676926-8676945 MsG0180000611.01.T01:intron 35.0%
!! CAGCAGAGTTTGTTTTCATT+GGG - Chr1:8677920-8677939 MsG0180000611.01.T01:intron 35.0%
!!! CCTTTGTATCTGTTTTTGAC+AGG - Chr1:8677288-8677307 MsG0180000611.01.T01:intron 35.0%
!!! TCGCTTGAAGCTATTTTGAT+TGG - Chr1:8679483-8679502 MsG0180000611.01.T01:CDS 35.0%
!!! TTTATTTTGATGAGTGGTGC+TGG - Chr1:8679042-8679061 MsG0180000611.01.T01:intron 35.0%
AAAACCTGCCGTATAACCAA+TGG + Chr1:8678694-8678713 None:intergenic 40.0%
AACCCTTCCATAAGTGCATT+GGG - Chr1:8679455-8679474 MsG0180000611.01.T01:CDS 40.0%
AAGACCCATCTATATGTGCA+GGG + Chr1:8678019-8678038 None:intergenic 40.0%
AAGGTAGAGTTAGATCCTCT+GGG - Chr1:8676852-8676871 MsG0180000611.01.T01:intron 40.0%
AGAGTGAGTGCTAAAAAGAG+GGG + Chr1:8679080-8679099 None:intergenic 40.0%
AGCAAATGCTGTCTCAATTG+TGG - Chr1:8676789-8676808 MsG0180000611.01.T01:intron 40.0%
AGGAAGATACTCATGCTTCA+TGG + Chr1:8676204-8676223 None:intergenic 40.0%
AGTGCAGACATAATCTCTAC+AGG - Chr1:8677067-8677086 MsG0180000611.01.T01:intron 40.0%
CCAATGAAAACAAACTCTGC+TGG + Chr1:8677922-8677941 None:intergenic 40.0%
CCTCTTCACCTGAAAATTGT+GGG + Chr1:8679388-8679407 None:intergenic 40.0%
CTTTCAATGGAATGTGTGTC+CGG + Chr1:8676550-8676569 None:intergenic 40.0%
GATACTACCCAATGCACTTA+TGG + Chr1:8679465-8679484 None:intergenic 40.0%
GCACTCACTCTTTCATTGAA+TGG - Chr1:8679089-8679108 MsG0180000611.01.T01:intron 40.0%
TAAGACCCATCTATATGTGC+AGG + Chr1:8678020-8678039 None:intergenic 40.0%
TACCCAATGCACTTATGGAA+GGG + Chr1:8679460-8679479 None:intergenic 40.0%
TCCAAACGTCTTCGCAAATA+CGG - Chr1:8675969-8675988 MsG0180000611.01.T01:three_prime_UTR 40.0%
TGACCACCATTTAACAACAC+TGG + Chr1:8678585-8678604 None:intergenic 40.0%
! CACTGTCCAGTGTTGTTAAA+TGG - Chr1:8678576-8678595 MsG0180000611.01.T01:intron 40.0%
! GAACTTTTGCACATGGAAGT+TGG - Chr1:8678386-8678405 MsG0180000611.01.T01:intron 40.0%
! GTGTTGTTAAATGGTGGTCA+TGG - Chr1:8678585-8678604 MsG0180000611.01.T01:intron 40.0%
! TGTCCAGTGTTGTTAAATGG+TGG - Chr1:8678579-8678598 MsG0180000611.01.T01:intron 40.0%
! TTGGTTATACGGCAGGTTTT+TGG - Chr1:8678694-8678713 MsG0180000611.01.T01:intron 40.0%
!! CCAGCAGAGTTTGTTTTCAT+TGG - Chr1:8677919-8677938 MsG0180000611.01.T01:intron 40.0%
!! GAAAGTGTCAGTGCTACATA+GGG - Chr1:8676565-8676584 MsG0180000611.01.T01:intron 40.0%
!! TGAAAGTGTCAGTGCTACAT+AGG - Chr1:8676564-8676583 MsG0180000611.01.T01:intron 40.0%
!! TGTAGCACTGACACTTTCAA+TGG + Chr1:8676563-8676582 None:intergenic 40.0%
!!! CCACAATTTTCAGGTGAAGA+GGG - Chr1:8679386-8679405 MsG0180000611.01.T01:CDS 40.0%
AAACCAACCTGAAGATCCTC+AGG + Chr1:8676224-8676243 None:intergenic 45.0%
AACTGGGAGTGGTTCTCTAT+GGG + Chr1:8678523-8678542 None:intergenic 45.0%
ACAACAGTACACTGCACAAG+TGG + Chr1:8677116-8677135 None:intergenic 45.0%
ACCGTATTTGCGAAGACGTT+TGG + Chr1:8675973-8675992 None:intergenic 45.0%
AGACATGGACAGGTTTACGA+GGG - Chr1:8676466-8676485 MsG0180000611.01.T01:intron 45.0%
AGGATACACACATAGATGGC+AGG + Chr1:8678462-8678481 None:intergenic 45.0%
AGGCAATGCAAACACCATTC+AGG - Chr1:8677308-8677327 MsG0180000611.01.T01:intron 45.0%
ATGGAAGGGTTCGTTGATAC+AGG + Chr1:8679446-8679465 None:intergenic 45.0%
ATGGCAGTTGATTGTGAGGA+AGG - Chr1:8678195-8678214 MsG0180000611.01.T01:intron 45.0%
ATGTGCCCCACACAAGTAAA+CGG - Chr1:8678069-8678088 MsG0180000611.01.T01:intron 45.0%
ATTGTGAGGAAGGATTCCAG+AGG - Chr1:8678205-8678224 MsG0180000611.01.T01:intron 45.0%
CAAAGGTCAGCATATCCTGA+AGG + Chr1:8677339-8677358 None:intergenic 45.0%
CAAGGTAGAGTTAGATCCTC+TGG - Chr1:8676851-8676870 MsG0180000611.01.T01:intron 45.0%
CCCTCTTCACCTGAAAATTG+TGG + Chr1:8679389-8679408 None:intergenic 45.0%
CTACCCAATGCACTTATGGA+AGG + Chr1:8679461-8679480 None:intergenic 45.0%
GAACCCTTCCATAAGTGCAT+TGG - Chr1:8679454-8679473 MsG0180000611.01.T01:CDS 45.0%
GAAGCATGAGTATCTTCCTG+AGG - Chr1:8676205-8676224 MsG0180000611.01.T01:intron 45.0%
GACATAGCAATCATGGGTCA+TGG - Chr1:8678176-8678195 MsG0180000611.01.T01:intron 45.0%
GAGGATCTAACTCTACCTTG+TGG + Chr1:8676851-8676870 None:intergenic 45.0%
GAGTGAGTGCTAAAAAGAGG+GGG + Chr1:8679079-8679098 None:intergenic 45.0%
GATACACACATAGATGGCAG+GGG + Chr1:8678460-8678479 None:intergenic 45.0%
GATGGAGTGATTGTTCAAGG+AGG - Chr1:8679787-8679806 MsG0180000611.01.T01:five_prime_UTR 45.0%
GGATACACACATAGATGGCA+GGG + Chr1:8678461-8678480 None:intergenic 45.0%
GTATCTTCCTGAGGATCTTC+AGG - Chr1:8676214-8676233 MsG0180000611.01.T01:intron 45.0%
GTGCTGTAAACTTCCCTCTT+GGG - Chr1:8679600-8679619 MsG0180000611.01.T01:intron 45.0%
TGGAAGGGTTCGTTGATACA+GGG + Chr1:8679445-8679464 None:intergenic 45.0%
TGTGGGGCTCATTTGTAGAA+TGG - Chr1:8679118-8679137 MsG0180000611.01.T01:intron 45.0%
TTAAGGTCTTCAACTGGGAG+TGG + Chr1:8678534-8678553 None:intergenic 45.0%
! GCAGCGAACCAGTTTTTCTT+TGG + Chr1:8675930-8675949 None:intergenic 45.0%
! TTTGAATCGGCTTCCAAAGG+AGG - Chr1:8676133-8676152 MsG0180000611.01.T01:exon 45.0%
!! TGAGGATCTTCAGGTTGGTT+TGG - Chr1:8676223-8676242 MsG0180000611.01.T01:intron 45.0%
!!! CCCACAATTTTCAGGTGAAG+AGG - Chr1:8679385-8679404 MsG0180000611.01.T01:CDS 45.0%
!!! AACATTTTTATAAATAAAAA+AGG + Chr1:8677860-8677879 None:intergenic 5.0%
ACCATTCAGGAGCTACCTTC+AGG - Chr1:8677321-8677340 MsG0180000611.01.T01:intron 50.0%
ACTGGACACTGACAGCATCA+TGG - Chr1:8678735-8678754 MsG0180000611.01.T01:intron 50.0%
ACTTGTGTGGGGCACATATG+TGG + Chr1:8678066-8678085 None:intergenic 50.0%
CAACTGGGAGTGGTTCTCTA+TGG + Chr1:8678524-8678543 None:intergenic 50.0%
CAGACATGGACAGGTTTACG+AGG - Chr1:8676465-8676484 MsG0180000611.01.T01:intron 50.0%
CGAGCATCAACAACCTCCTT+TGG + Chr1:8676149-8676168 None:intergenic 50.0%
CTCAAGGGTTGTTCAACCTC+TGG + Chr1:8678224-8678243 None:intergenic 50.0%
CTCCACAGTACTCAGCTCAA+GGG + Chr1:8678239-8678258 None:intergenic 50.0%
CTGCCGTATAACCAATGGCA+CGG + Chr1:8678689-8678708 None:intergenic 50.0%
CTGGTATCATGCCCCAACAT+CGG + Chr1:8678264-8678283 None:intergenic 50.0%
CTTCCTGAGGATCTTCAGGT+TGG - Chr1:8676218-8676237 MsG0180000611.01.T01:intron 50.0%
GCGTTAGAGTCCATATCAGC+TGG + Chr1:8678283-8678302 None:intergenic 50.0%
GCTATGTCTTTAGCAGGGCT+TGG + Chr1:8678164-8678183 None:intergenic 50.0%
GGAAGGGTTCGTTGATACAG+GGG + Chr1:8679444-8679463 None:intergenic 50.0%
GGGCATGATACCAGCTGATA+TGG - Chr1:8678270-8678289 MsG0180000611.01.T01:CDS 50.0%
GGTCATGGCAGTTGATTGTG+AGG - Chr1:8678191-8678210 MsG0180000611.01.T01:intron 50.0%
TACTGTGGAGACCCGATGTT+GGG - Chr1:8678249-8678268 MsG0180000611.01.T01:CDS 50.0%
TCCTGAAGGTAGCTCCTGAA+TGG + Chr1:8677325-8677344 None:intergenic 50.0%
TCTCCACAGTACTCAGCTCA+AGG + Chr1:8678240-8678259 None:intergenic 50.0%
TGCCGTATAACCAATGGCAC+GGG + Chr1:8678688-8678707 None:intergenic 50.0%
TGGGCCCTGCACATATAGAT+GGG - Chr1:8678012-8678031 MsG0180000611.01.T01:intron 50.0%
TGGTATCATGCCCCAACATC+GGG + Chr1:8678263-8678282 None:intergenic 50.0%
TTGGGCCCTGCACATATAGA+TGG - Chr1:8678011-8678030 MsG0180000611.01.T01:intron 50.0%
TTGTGAAGGGATTCCCGTCA+TGG - Chr1:8678662-8678681 MsG0180000611.01.T01:intron 50.0%
! AACCCTTGAGCTGAGTACTG+TGG - Chr1:8678234-8678253 MsG0180000611.01.T01:intron 50.0%
! GGTGCTGTAAACTTCCCTCT+TGG - Chr1:8679599-8679618 MsG0180000611.01.T01:intron 50.0%
!! GGCTTTGAATCGGCTTCCAA+AGG - Chr1:8676130-8676149 MsG0180000611.01.T01:exon 50.0%
ACGAGCAGAGCGTGAAGCAT+TGG - Chr1:8679410-8679429 MsG0180000611.01.T01:CDS 55.0%
ACTGTGGAGACCCGATGTTG+GGG - Chr1:8678250-8678269 MsG0180000611.01.T01:CDS 55.0%
CACACATAGATGGCAGGGGA+TGG + Chr1:8678456-8678475 None:intergenic 55.0%
CACGTGTGTCAGTGTCGTGT+CGG - Chr1:8676516-8676535 MsG0180000611.01.T01:intron 55.0%
GCATGTGCTCGACACAGACA+TGG - Chr1:8676451-8676470 MsG0180000611.01.T01:intron 55.0%
GGTGGTCATGGTAGCCACTA+TGG - Chr1:8678597-8678616 MsG0180000611.01.T01:intron 55.0%
GTACTGTGGAGACCCGATGT+TGG - Chr1:8678248-8678267 MsG0180000611.01.T01:CDS 55.0%
TCAGTGTCCAGTGCTGTCGT+TGG + Chr1:8678727-8678746 None:intergenic 55.0%
TGCTCGACACAGACATGGAC+AGG - Chr1:8676456-8676475 MsG0180000611.01.T01:intron 55.0%
! CGAGCAGAGCGTGAAGCATT+GGG - Chr1:8679411-8679430 MsG0180000611.01.T01:CDS 55.0%
! CGTGCCATTGGTTATACGGC+AGG - Chr1:8678687-8678706 MsG0180000611.01.T01:intron 55.0%
! GGCCCGTGCCATTGGTTATA+CGG - Chr1:8678683-8678702 MsG0180000611.01.T01:intron 55.0%
ACCAATGGCACGGGCCATGA+CGG + Chr1:8678679-8678698 None:intergenic 60.0%
CCAGTGCTGTCGTTGGCAGA+AGG + Chr1:8678720-8678739 None:intergenic 60.0%
CCTTCTGCCAACGACAGCAC+TGG - Chr1:8678717-8678736 MsG0180000611.01.T01:intron 60.0%
! GTGTCAGTGTCGTGTCGGTG+TGG - Chr1:8676521-8676540 MsG0180000611.01.T01:intron 60.0%
! TGTCGTGTCGGTGTGGACAC+CGG - Chr1:8676528-8676547 MsG0180000611.01.T01:intron 60.0%
!! GCAGAGCGTGAAGCATTGGG+AGG - Chr1:8679414-8679433 MsG0180000611.01.T01:CDS 60.0%
CCAATGGCACGGGCCATGAC+GGG + Chr1:8678678-8678697 None:intergenic 65.0%
CCCGTCATGGCCCGTGCCAT+TGG - Chr1:8678675-8678694 MsG0180000611.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8675808 8679806 8675808 ID=MsG0180000611.01;Name=MsG0180000611.01
Chr1 mRNA 8675808 8679806 8675808 ID=MsG0180000611.01.T01;Parent=MsG0180000611.01;Name=MsG0180000611.01.T01;_AED=0.40;_eAED=0.42;_QI=89|0.33|0.5|1|0.33|0.25|4|339|130
Chr1 exon 8679624 8679806 8679624 ID=MsG0180000611.01.T01:exon:2308;Parent=MsG0180000611.01.T01
Chr1 exon 8679375 8679536 8679375 ID=MsG0180000611.01.T01:exon:2309;Parent=MsG0180000611.01.T01
Chr1 exon 8678237 8678304 8678237 ID=MsG0180000611.01.T01:exon:2310;Parent=MsG0180000611.01.T01
Chr1 exon 8675808 8676215 8675808 ID=MsG0180000611.01.T01:exon:2311;Parent=MsG0180000611.01.T01
Chr1 five_prime_UTR 8679718 8679806 8679718 ID=MsG0180000611.01.T01:five_prime_utr;Parent=MsG0180000611.01.T01
Chr1 CDS 8679624 8679717 8679624 ID=MsG0180000611.01.T01:cds;Parent=MsG0180000611.01.T01
Chr1 CDS 8679375 8679536 8679375 ID=MsG0180000611.01.T01:cds;Parent=MsG0180000611.01.T01
Chr1 CDS 8678237 8678304 8678237 ID=MsG0180000611.01.T01:cds;Parent=MsG0180000611.01.T01
Chr1 CDS 8676147 8676215 8676147 ID=MsG0180000611.01.T01:cds;Parent=MsG0180000611.01.T01
Chr1 three_prime_UTR 8675808 8676146 8675808 ID=MsG0180000611.01.T01:three_prime_utr;Parent=MsG0180000611.01.T01
Gene Sequence

>MsG0180000611.01.T01

ATGGCGTCTTTGCTACAAGCGATTGTAGATCCAAAGAAAAACTGGTTCGCTGCTCAACACATGAAAGCTGTTTCCAAACGTCTTCGCAAATACGGGTTACGATATGATGATCTGTATGATCCGTATTACGATTTGGATATTAAGGAGGCTTTGAATCGGCTTCCAAAGGAGGTTGTTGATGCTCGTCATGCTCGTCTTAAGCGTGCTATTGATCTTTCCATGAAGCATGAGTATCTTCCTGAGGATCTTCAGGTTGGCAATGCAAACACCATTCAGGAGCTACCTTCAGGATATGCTGACCTTTGTAAGTGCCTTGTTTTATATGTGAAGAGGGAACGAGCAGAGCGTGAAGCATTGGGAGGTTTGCCCCTGTATCAACGAACCCTTCCATAA

Protein sequence

>MsG0180000611.01.T01

MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPEDLQVGNANTIQELPSGYADLCKCLVLYVKRERAEREALGGLPLYQRTLP*