AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041836.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041836.01.T01 MTR_4g130820 70.290 414 102 6 54 460 328 727 0.0 573
MsG0880041836.01.T01 MTR_3g091080 60.591 406 143 5 63 460 314 710 2.74e-169 493
MsG0880041836.01.T01 MTR_2g460590 58.195 421 149 4 60 465 283 691 4.00e-167 487
MsG0880041836.01.T01 MTR_1g028370 56.222 450 152 9 31 465 297 716 9.29e-167 487
MsG0880041836.01.T01 MTR_2g094860 61.198 384 138 5 78 459 327 701 6.76e-163 477
MsG0880041836.01.T01 MTR_3g109030 59.799 398 148 3 73 460 326 721 4.82e-161 473
MsG0880041836.01.T01 MTR_3g088875 54.176 443 180 8 41 464 254 692 3.41e-158 464
MsG0880041836.01.T01 MTR_7g034605 56.279 430 167 10 38 459 262 678 1.21e-157 462
MsG0880041836.01.T01 MTR_4g058730 64.740 346 119 3 43 387 274 617 4.29e-157 459
MsG0880041836.01.T01 MTR_1g064240 55.125 439 169 10 41 463 284 710 9.29e-155 456
MsG0880041836.01.T01 MTR_8g027755 56.633 392 155 5 74 458 334 717 1.81e-153 453
MsG0880041836.01.T01 MTR_7g117310 57.178 411 154 7 63 460 260 661 4.17e-151 445
MsG0880041836.01.T01 MTR_7g117310 57.178 411 154 7 63 460 326 727 1.35e-150 446
MsG0880041836.01.T01 MTR_7g117310 57.178 411 154 7 63 460 314 715 1.60e-150 446
MsG0880041836.01.T01 MTR_2g081110 40.810 321 182 5 66 385 310 623 2.27e-76 252
MsG0880041836.01.T01 MTR_8g464570 40.810 321 182 5 66 385 314 627 6.05e-75 248
MsG0880041836.01.T01 MTR_7g012260 40.549 328 190 3 61 387 354 677 8.30e-75 249
MsG0880041836.01.T01 MTR_6g477760 42.857 343 170 9 57 387 364 692 5.05e-69 233
MsG0880041836.01.T01 MTR_6g075440 36.869 396 210 11 39 407 377 759 5.45e-67 229
MsG0880041836.01.T01 MTR_6g075440 37.143 385 205 11 39 402 377 745 1.02e-66 228
MsG0880041836.01.T01 MTR_6g075290 38.945 398 212 8 15 393 176 561 3.58e-66 223
MsG0880041836.01.T01 MTR_6g075290 38.945 398 212 8 15 393 337 722 2.79e-65 223
MsG0880041836.01.T01 MTR_6g075290 38.945 398 212 8 15 393 378 763 6.37e-65 223
MsG0880041836.01.T01 MTR_5g007630 39.216 357 188 9 56 399 397 737 5.59e-62 214
MsG0880041836.01.T01 MTR_6g076060 41.379 319 165 6 75 380 145 454 2.97e-61 208
MsG0880041836.01.T01 MTR_6g075390 37.987 308 162 7 75 362 360 658 9.98e-50 180
MsG0880041836.01.T01 MTR_6g075410 37.309 327 177 9 75 388 349 660 1.16e-47 174
MsG0880041836.01.T01 MTR_4g007410 100.000 39 0 0 14 52 12 50 3.97e-25 99.0
MsG0880041836.01.T01 MTR_7g005900 100.000 32 0 0 21 52 8 39 1.83e-19 82.8
MsG0880041836.01.T01 MTR_4g113530 25.366 205 150 2 100 303 239 441 1.64e-17 85.9
MsG0880041836.01.T01 MTR_3g108320 25.616 203 148 2 101 303 243 442 9.58e-17 83.2
MsG0880041836.01.T01 MTR_3g108320 25.616 203 148 2 101 303 243 442 1.10e-16 82.8
MsG0880041836.01.T01 MTR_3g108320 25.616 203 148 2 101 303 243 442 1.17e-16 83.2
MsG0880041836.01.T01 MTR_2g006870 24.020 204 152 2 100 303 262 462 3.73e-15 78.6
MsG0880041836.01.T01 MTR_5g077770 23.656 186 139 2 95 280 277 459 1.23e-12 70.5
MsG0880041836.01.T01 MTR_8g046440 20.321 187 148 1 100 286 34 219 5.75e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041836.01.T01 AT1G19780 73.759 423 101 4 53 465 329 751 0.0 619
MsG0880041836.01.T01 AT1G19780 73.759 423 101 4 53 465 118 540 0.0 617
MsG0880041836.01.T01 AT1G15990 74.818 413 93 5 57 460 327 737 0.0 608
MsG0880041836.01.T01 AT4G30560 68.372 430 101 6 40 460 326 729 0.0 583
MsG0880041836.01.T01 AT4G30560 68.372 430 101 6 40 460 300 703 0.0 583
MsG0880041836.01.T01 AT4G30560 68.372 430 101 6 40 460 300 703 0.0 583
MsG0880041836.01.T01 AT4G30560 68.372 430 101 6 40 460 300 703 0.0 583
MsG0880041836.01.T01 AT4G30560 68.372 430 101 6 40 460 326 729 0.0 583
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 356 767 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 356 767 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 356 767 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 306 717 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 356 767 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 333 744 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 333 744 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 333 744 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 333 744 0.0 572
MsG0880041836.01.T01 AT2G23980 68.019 419 115 6 54 460 333 744 0.0 572
MsG0880041836.01.T01 AT5G57940 66.276 427 128 4 38 460 302 716 0.0 568
MsG0880041836.01.T01 AT5G57940 66.276 427 128 4 38 460 302 716 0.0 568
MsG0880041836.01.T01 AT5G57940 66.276 427 128 4 38 460 295 709 0.0 568
MsG0880041836.01.T01 AT1G01340 54.204 452 175 6 22 460 268 700 2.94e-164 480
MsG0880041836.01.T01 AT1G01340 54.204 452 175 6 22 460 273 705 2.97e-164 481
MsG0880041836.01.T01 AT4G01010 55.402 435 163 7 43 462 277 695 9.07e-164 479
MsG0880041836.01.T01 AT4G01010 55.402 435 163 7 43 462 277 695 9.07e-164 479
MsG0880041836.01.T01 AT4G30360 57.077 431 175 4 42 464 292 720 4.03e-162 475
MsG0880041836.01.T01 AT5G53130 58.333 408 153 5 62 460 315 714 9.26e-162 474
MsG0880041836.01.T01 AT2G28260 60.836 383 127 2 78 460 278 637 3.84e-161 470
MsG0880041836.01.T01 AT2G28260 60.836 383 127 2 78 460 318 677 1.19e-160 470
MsG0880041836.01.T01 AT2G24610 57.783 424 152 8 56 460 309 724 3.40e-160 471
MsG0880041836.01.T01 AT2G24610 57.783 424 152 8 56 460 324 739 8.26e-160 470
MsG0880041836.01.T01 AT5G14870 53.125 448 177 9 39 459 259 700 3.25e-156 460
MsG0880041836.01.T01 AT2G46430 56.853 394 150 7 74 458 319 701 1.49e-150 445
MsG0880041836.01.T01 AT2G46430 56.853 394 150 7 74 458 319 701 1.49e-150 445
MsG0880041836.01.T01 AT3G48010 50.670 448 184 8 41 458 264 704 1.58e-145 432
MsG0880041836.01.T01 AT2G46440 48.241 398 178 8 42 427 62 443 9.06e-115 345
MsG0880041836.01.T01 AT2G46440 48.241 398 178 8 42 427 240 621 1.94e-112 345
MsG0880041836.01.T01 AT2G46450 40.749 427 214 11 42 456 204 603 1.88e-100 313
MsG0880041836.01.T01 AT2G46450 40.749 427 214 11 42 456 217 616 3.26e-100 313
MsG0880041836.01.T01 AT2G46450 40.888 428 212 12 42 456 240 639 6.86e-100 313
MsG0880041836.01.T01 AT2G46450 40.888 428 212 12 42 456 240 639 6.86e-100 313
MsG0880041836.01.T01 AT5G54250 40.810 321 182 5 66 385 335 648 4.57e-75 249
MsG0880041836.01.T01 AT5G54250 40.810 321 182 5 66 385 335 648 4.57e-75 249
MsG0880041836.01.T01 AT5G54250 40.810 321 182 5 66 385 335 648 4.57e-75 249
MsG0880041836.01.T01 AT3G17690 41.692 331 172 8 67 388 401 719 4.68e-72 242
MsG0880041836.01.T01 AT5G15410 40.683 322 184 4 59 379 362 677 7.09e-72 241
MsG0880041836.01.T01 AT5G15410 40.683 322 184 4 59 379 361 676 7.97e-72 241
MsG0880041836.01.T01 AT5G54250 39.564 321 181 6 66 385 335 643 9.92e-70 234
MsG0880041836.01.T01 AT3G17700 40.688 349 180 9 42 379 413 745 3.83e-65 224
MsG0880041836.01.T01 AT3G17690 44.262 244 124 4 67 310 401 632 1.82e-59 206
MsG0880041836.01.T01 AT3G17700 41.971 274 143 6 42 315 413 670 7.12e-54 192
MsG0880041836.01.T01 AT3G05870 80.769 52 7 1 1 52 4 52 1.27e-25 100
MsG0880041836.01.T01 AT3G05870 80.769 52 7 1 1 52 4 52 1.27e-25 100
MsG0880041836.01.T01 AT3G05870 80.769 52 7 1 1 52 4 52 1.27e-25 100
MsG0880041836.01.T01 AT3G05870 100.000 39 0 0 14 52 11 49 4.80e-25 99.0
MsG0880041836.01.T01 AT3G05870 100.000 39 0 0 14 52 11 49 4.80e-25 99.0
MsG0880041836.01.T01 AT3G05870 100.000 39 0 0 14 52 11 49 4.80e-25 99.0
MsG0880041836.01.T01 AT3G05870 97.500 40 1 0 13 52 1 40 8.40e-25 97.8
MsG0880041836.01.T01 AT3G17690 43.802 121 63 2 67 187 401 516 2.36e-23 103
MsG0880041836.01.T01 AT4G22200 24.020 204 152 2 100 303 263 463 1.68e-16 82.4
MsG0880041836.01.T01 AT4G22200 24.020 204 152 2 100 303 263 463 2.61e-16 82.4
MsG0880041836.01.T01 AT5G26640 54.839 62 26 2 19 79 2 62 4.20e-16 73.2
MsG0880041836.01.T01 AT2G26650 23.902 205 153 2 100 303 239 441 1.26e-14 77.0
MsG0880041836.01.T01 AT2G26650 23.902 205 153 2 100 303 134 336 1.67e-14 76.6
MsG0880041836.01.T01 AT5G46240 22.727 198 152 1 100 297 246 442 4.13e-14 75.1
MsG0880041836.01.T01 AT5G37500 24.468 188 139 2 95 282 252 436 3.39e-13 72.4
MsG0880041836.01.T01 AT5G37500 24.468 188 139 2 95 282 252 436 4.24e-13 72.0
MsG0880041836.01.T01 AT3G02850 23.958 192 141 3 95 284 269 457 4.58e-13 72.0
MsG0880041836.01.T01 AT5G37500 23.936 188 140 2 95 282 252 436 4.68e-13 72.0
MsG0880041836.01.T01 AT5G37500 23.936 188 140 2 95 282 198 382 4.85e-13 72.0
MsG0880041836.01.T01 AT3G02850 23.958 192 141 3 95 284 269 457 5.15e-13 72.0
MsG0880041836.01.T01 AT3G02850 23.958 192 141 3 95 284 269 457 6.64e-13 71.2
MsG0880041836.01.T01 AT4G32650 23.153 203 153 2 101 303 276 475 8.30e-13 70.9
MsG0880041836.01.T01 AT4G32650 23.153 203 153 2 101 303 276 475 1.26e-12 70.5
MsG0880041836.01.T01 AT4G32650 23.153 203 153 2 101 303 276 475 1.27e-12 70.5

Find 118 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 8:-41510 MsG0880041836.01.T01:CDS
GGCAAGCTTGCTGCAGATTT+TGG 0.164117 8:+40759 None:intergenic
GGTGGGGACTTCAGAATTTA+AGG 0.170474 8:-41964 MsG0880041836.01.T01:intron
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 8:-40456 MsG0880041836.01.T01:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 8:+41985 None:intergenic
TTCTGCAAGGGCGTTGGTTC+CGG 0.218060 8:-40481 MsG0880041836.01.T01:CDS
CTGCATGGAGGAAGCATTTA+AGG 0.231374 8:-40563 MsG0880041836.01.T01:CDS
ATATCTCTTCTAAGATCTTT+TGG 0.250851 8:+41178 None:intergenic
ATGCTGTTGCTTCATGGACT+TGG 0.279744 8:-43560 MsG0880041836.01.T01:CDS
CAGAGAAGACTTACATAGTT+AGG 0.283571 8:-40932 MsG0880041836.01.T01:CDS
AGGGGTCGATGAAGAAAATT+TGG 0.285665 8:-41212 MsG0880041836.01.T01:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 8:+41508 None:intergenic
TCTGCAAGGGCGTTGGTTCC+GGG 0.297464 8:-40480 MsG0880041836.01.T01:CDS
AAATTTGGGGAAAACTTCTA+TGG 0.302110 8:+42000 None:intergenic
CATAGACAGTAACAAAATTT+GGG 0.315147 8:+41986 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 8:-41482 MsG0880041836.01.T01:CDS
TCCATAGTAATAGCTATTAT+GGG 0.333113 8:-41509 MsG0880041836.01.T01:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 8:+40343 None:intergenic
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 8:+40342 None:intergenic
TGTTAAACTGTCCAGTTTCC+CGG 0.354923 8:+44670 None:intergenic
TGTGTGTGGAACCGGGAAAC+TGG 0.368506 8:-44681 MsG0880041836.01.T01:CDS
TCAATCAATGTCGGTTCGTC+TGG 0.370374 8:-41350 MsG0880041836.01.T01:CDS
CGTGCATCTGTGTGTGGAAC+CGG 0.384315 8:-44689 MsG0880041836.01.T01:CDS
ATACAACAGTCTATGCTTCT+CGG 0.384722 8:-40428 MsG0880041836.01.T01:CDS
TGTCCTGATTGTAAACTTCC+CGG 0.396496 8:-43486 MsG0880041836.01.T01:CDS
TCATTGAGAGCACTGAAATC+AGG 0.396573 8:+40327 None:intergenic
GATGGCATGCTGTTGCTTCA+TGG 0.397141 8:-43566 MsG0880041836.01.T01:CDS
ATTTGTAGGATGGCCTTTGA+TGG 0.411828 8:-43513 MsG0880041836.01.T01:CDS
CTTGCAGAATCATCACTTCC+CGG 0.414286 8:+40495 None:intergenic
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 8:-40408 MsG0880041836.01.T01:CDS
TGCTGTTGCTTCATGGACTT+GGG 0.419431 8:-43559 MsG0880041836.01.T01:CDS
ATGAACAGCATCTCATCAAC+TGG 0.419571 8:+40900 None:intergenic
TTCACGGTTCTTGTTGATGA+TGG 0.422131 8:+40738 None:intergenic
TACCTCACTCATAGCTTTCA+CGG 0.425446 8:+40722 None:intergenic
ATGAAACATGTGGGATTTGT+AGG 0.429235 8:-43527 MsG0880041836.01.T01:CDS
TCCATTGTTGCGAATAGAAA+CGG 0.447494 8:+40613 None:intergenic
GGGTGTTCAACCACTTGTAT+TGG 0.454525 8:+41236 None:intergenic
ATGGAAAACAAAACCTCTCC+AGG 0.456409 8:+41527 None:intergenic
GCATCATCGCTTGCTTCCTC+CGG 0.465125 8:-41287 MsG0880041836.01.T01:CDS
GCTTGCTTCCTCCGGACCTA+AGG 0.465489 8:-41279 MsG0880041836.01.T01:CDS
GTCCTGATTGTAAACTTCCC+GGG 0.472599 8:-43485 MsG0880041836.01.T01:CDS
TTCACCAGCTCTCTTGAACT+TGG 0.484399 8:+40369 None:intergenic
CTGACTCTTTCCCTTAGGTC+CGG 0.486118 8:+41268 None:intergenic
ACTGAGTGGGCAGTCATCCC+CGG 0.486844 8:+43467 None:intergenic
AGCGTCTGACTCTTTCCCTT+AGG 0.488363 8:+41263 None:intergenic
AGAGAAGACTTACATAGTTA+GGG 0.493349 8:-40931 MsG0880041836.01.T01:CDS
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 8:-41006 MsG0880041836.01.T01:CDS
GGCATTTGCTTTAGAAGCAG+AGG 0.505619 8:-40697 MsG0880041836.01.T01:CDS
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 8:-41144 MsG0880041836.01.T01:CDS
TCCCCGGGAAGTTTACAATC+AGG 0.518100 8:+43483 None:intergenic
TAGACACATACATGGTAGAC+AGG 0.521475 8:-40649 MsG0880041836.01.T01:CDS
ATTCGCAACAATGGAGAACA+TGG 0.522904 8:-40605 MsG0880041836.01.T01:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 8:+41353 None:intergenic
TGGAGGAAATGAGGATCAAA+AGG 0.526808 8:-41330 MsG0880041836.01.T01:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 8:-40614 MsG0880041836.01.T01:CDS
AGAGTTGCTAACATGGGCAT+TGG 0.533440 8:-40784 MsG0880041836.01.T01:CDS
TGATGATTCTGCAAGGGCGT+TGG 0.534637 8:-40487 MsG0880041836.01.T01:CDS
TTTCACAGTACACTTGGTCA+GGG 0.537219 8:-41569 MsG0880041836.01.T01:intron
GAAAGCTATGAGTGAGGTAG+AGG 0.537681 8:-40718 MsG0880041836.01.T01:CDS
CTAGAGAGTGTTACTACAGA+TGG 0.541421 8:-40864 MsG0880041836.01.T01:CDS
GTCTTCTCTGTATATAAACT+CGG 0.543647 8:+40945 None:intergenic
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 8:-41347 MsG0880041836.01.T01:CDS
ATATACCAGGGTATGAAAGT+TGG 0.549829 8:-42132 MsG0880041836.01.T01:intron
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 8:-41143 MsG0880041836.01.T01:intron
GCACTGAAATCAGGTTCTGA+GGG 0.551873 8:+40336 None:intergenic
AGAAGTGGCTTCTTCAACAG+AGG 0.551875 8:-40837 MsG0880041836.01.T01:CDS
CTGAGTGGGCAGTCATCCCC+GGG 0.552645 8:+43468 None:intergenic
CTTGCTTCCTCCGGACCTAA+GGG 0.552988 8:-41278 MsG0880041836.01.T01:CDS
AGCACTGAAATCAGGTTCTG+AGG 0.553944 8:+40335 None:intergenic
TTTGACGAACTTTGAGGACC+CGG 0.557037 8:+40462 None:intergenic
TTGCAGAATCATCACTTCCC+GGG 0.558557 8:+40496 None:intergenic
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 8:-41339 MsG0880041836.01.T01:CDS
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 8:-40373 MsG0880041836.01.T01:CDS
TCTTCTGATTGGAAACATGC+AGG 0.565687 8:-41471 MsG0880041836.01.T01:intron
GAGATGCTGTTCATCATTCG+TGG 0.566373 8:-40891 MsG0880041836.01.T01:CDS
ACTACAGATGGTGGAAGAAG+TGG 0.567107 8:-40852 MsG0880041836.01.T01:CDS
TCCTGATTGTAAACTTCCCG+GGG 0.576107 8:-43484 MsG0880041836.01.T01:CDS
ATACTACGAATCTGATTACC+CGG 0.576933 8:-40514 MsG0880041836.01.T01:CDS
TTCACAGTACACTTGGTCAG+GGG 0.577586 8:-41568 MsG0880041836.01.T01:intron
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 8:-40547 MsG0880041836.01.T01:CDS
CCATAGTAATAGCTATTATG+GGG 0.581237 8:-41508 MsG0880041836.01.T01:CDS
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 8:-40551 MsG0880041836.01.T01:CDS
CAATCTATATTCAAGCTGCA+TGG 0.590954 8:-40578 MsG0880041836.01.T01:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 8:-40557 MsG0880041836.01.T01:CDS
GCGATGATGCATCCACTGCT+CGG 0.598686 8:+41300 None:intergenic
GTGCATCTGTGTGTGGAACC+GGG 0.605622 8:-44688 MsG0880041836.01.T01:CDS
GACTAGTACCTACCCTGGAG+AGG 0.607375 8:-41540 MsG0880041836.01.T01:CDS
GAGAGTGTTACTACAGATGG+TGG 0.613056 8:-40861 MsG0880041836.01.T01:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 8:-41359 MsG0880041836.01.T01:CDS
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 8:-40544 MsG0880041836.01.T01:CDS
ACTCTTTCCCTTAGGTCCGG+AGG 0.617015 8:+41271 None:intergenic
TTAGGAGTAGCTTACTGAGT+GGG 0.619701 8:+43454 None:intergenic
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 8:-41312 MsG0880041836.01.T01:CDS
AAACAAAACCTCTCCAGGGT+AGG 0.625990 8:+41532 None:intergenic
ATCAGGACAACATCCATCAA+AGG 0.626104 8:+43500 None:intergenic
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 8:-40791 MsG0880041836.01.T01:CDS
CGGGAAGTGATGATTCTGCA+AGG 0.626896 8:-40494 MsG0880041836.01.T01:CDS
AAGACTTACATAGTTAGGGA+AGG 0.629987 8:-40927 MsG0880041836.01.T01:CDS
TACAAGTGGTTGAACACCCG+AGG 0.630986 8:-41232 MsG0880041836.01.T01:CDS
GACGCTACGACCAATACAAG+TGG 0.637852 8:-41246 MsG0880041836.01.T01:CDS
ACATGTCGTGCATCTGTGTG+TGG 0.644331 8:-44695 MsG0880041836.01.T01:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 8:+41528 None:intergenic
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 8:+41002 None:intergenic
GGGAAGTGATGATTCTGCAA+GGG 0.645571 8:-40493 MsG0880041836.01.T01:CDS
AACATGTGGGATTTGTAGGA+TGG 0.654714 8:-43523 MsG0880041836.01.T01:CDS
TCACAGTTTAGACACATACA+TGG 0.659888 8:-40657 MsG0880041836.01.T01:CDS
ATAGACAGTAACAAAATTTG+GGG 0.668163 8:+41987 None:intergenic
CTTCTGACTAGTACCTACCC+TGG 0.672528 8:-41545 MsG0880041836.01.T01:CDS
ACAAGTGGTTGAACACCCGA+GGG 0.676415 8:-41231 MsG0880041836.01.T01:CDS
AACCGTGAAAGCTATGAGTG+AGG 0.683734 8:-40724 MsG0880041836.01.T01:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 8:-40604 MsG0880041836.01.T01:CDS
TACTACGAATCTGATTACCC+GGG 0.696386 8:-40513 MsG0880041836.01.T01:CDS
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 8:-40790 MsG0880041836.01.T01:CDS
AACCGACATTGATTGAAGGT+AGG 0.702813 8:+41357 None:intergenic
TCTATATTCAAGCTGCATGG+AGG 0.707083 8:-40575 MsG0880041836.01.T01:CDS
GATGCACAAGATGAAACATG+TGG 0.720145 8:-43537 MsG0880041836.01.T01:CDS
ATGCACAAGATGAAACATGT+GGG 0.725526 8:-43536 MsG0880041836.01.T01:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 8:-41230 MsG0880041836.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATGTATTAGTGT+CGG - Chr8:43168-43187 MsG0880041836.01.T01:intron 15.0%
!! ATATTTATAAAGGATGATAT+AGG + Chr8:43338-43357 None:intergenic 15.0%
!! GTAGTTTCATAAATATAATT+AGG - Chr8:41966-41985 MsG0880041836.01.T01:CDS 15.0%
!! TTATCAATATATCATGAATT+GGG - Chr8:40623-40642 MsG0880041836.01.T01:CDS 15.0%
!! TTTATCAATATATCATGAAT+TGG - Chr8:40622-40641 MsG0880041836.01.T01:CDS 15.0%
!!! AATAGTTGTCAAAATTTTTT+AGG - Chr8:40862-40881 MsG0880041836.01.T01:CDS 15.0%
!!! ATACATTTTAGAACATATTA+TGG - Chr8:42722-42741 MsG0880041836.01.T01:intron 15.0%
!!! ATAGTTGTCAAAATTTTTTA+GGG - Chr8:40863-40882 MsG0880041836.01.T01:CDS 15.0%
!!! ATTTTAATCAAAATTTGTGT+TGG - Chr8:41330-41349 MsG0880041836.01.T01:CDS 15.0%
!!! TGATTATGTAAAAATGATTT+TGG + Chr8:41216-41235 None:intergenic 15.0%
!!! TTTTAATCAAAATTTGTGTT+GGG - Chr8:41331-41350 MsG0880041836.01.T01:CDS 15.0%
!!! TTTTTTTTCTTGACAAAATA+GGG - Chr8:42470-42489 MsG0880041836.01.T01:intron 15.0%
!!! TTTTTTTTTCTTGACAAAAT+AGG - Chr8:42469-42488 MsG0880041836.01.T01:intron 15.0%
!! AAGTAATTGAAATCCATTTA+AGG - Chr8:42528-42547 MsG0880041836.01.T01:intron 20.0%
!! AATTGTCAATTGTTATCTTA+TGG + Chr8:42103-42122 None:intergenic 20.0%
!! AGTAATTGAAATCCATTTAA+GGG - Chr8:42529-42548 MsG0880041836.01.T01:intron 20.0%
!! ATAAAGCAAGGTATAAAAAA+TGG + Chr8:42660-42679 None:intergenic 20.0%
!! ATCTAATAATCTTTGTATTC+TGG - Chr8:41650-41669 MsG0880041836.01.T01:intron 20.0%
!! ATGTTTACAGTAAAAACTTT+CGG + Chr8:43569-43588 None:intergenic 20.0%
!! CTAATTATATGTAACAACAA+AGG - Chr8:41277-41296 MsG0880041836.01.T01:CDS 20.0%
!! GAACTCAAAAATCAATAAAA+AGG + Chr8:41863-41882 None:intergenic 20.0%
!! GAATCAAAGCATATTTATAA+AGG + Chr8:43348-43367 None:intergenic 20.0%
!! GTATTAGAAAAAATTGAAAG+AGG + Chr8:40560-40579 None:intergenic 20.0%
!! TAAAATCCTAATTCAACAAA+AGG - Chr8:40389-40408 MsG0880041836.01.T01:CDS 20.0%
!! TAAAGCAAGGTATAAAAAAT+GGG + Chr8:42659-42678 None:intergenic 20.0%
!! TCTAATAATCTTTGTATTCT+GGG - Chr8:41651-41670 MsG0880041836.01.T01:intron 20.0%
!! TGTAATTTGATCATTTGTAT+TGG - Chr8:42554-42573 MsG0880041836.01.T01:intron 20.0%
!! TTACATATAATTAGTGTGTT+TGG + Chr8:41271-41290 None:intergenic 20.0%
!!! AAATTTCCTTTTGTTGAATT+AGG + Chr8:40398-40417 None:intergenic 20.0%
!!! AACAATTGACAATTCTATTT+TGG - Chr8:42109-42128 MsG0880041836.01.T01:CDS 20.0%
!!! ACAATTGACAATTCTATTTT+GGG - Chr8:42110-42129 MsG0880041836.01.T01:CDS 20.0%
!!! ATTGTATGTTTTTGTTACAA+TGG - Chr8:40769-40788 MsG0880041836.01.T01:CDS 20.0%
!!! TATTGTAATATCCTTTTTGT+TGG - Chr8:42603-42622 MsG0880041836.01.T01:intron 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG + Chr8:43132-43151 None:intergenic 20.0%
!!! TTGAATTAGGATTTTAAATC+TGG + Chr8:40385-40404 None:intergenic 20.0%
!!! TTTATAAAGCTTTATTCTCA+AGG - Chr8:42035-42054 MsG0880041836.01.T01:CDS 20.0%
! AAACTACAAATGATGTTTAG+AGG + Chr8:41953-41972 None:intergenic 25.0%
! AATTCACATTTCTTGTATTG+TGG - Chr8:42841-42860 MsG0880041836.01.T01:intron 25.0%
! ACCATAATACTTATAAAGCA+AGG + Chr8:42672-42691 None:intergenic 25.0%
! ACCTTGCTTTATAAGTATTA+TGG - Chr8:42668-42687 MsG0880041836.01.T01:intron 25.0%
! ACTTTCATCTCTGTAAATTT+GGG + Chr8:40501-40520 None:intergenic 25.0%
! AGAATCATATTTGATCAGTT+AGG + Chr8:42261-42280 None:intergenic 25.0%
! ATAGACAGTAACAAAATTTG+GGG + Chr8:43026-43045 None:intergenic 25.0%
! ATGATTAAACGGATATGTAT+GGG + Chr8:40829-40848 None:intergenic 25.0%
! ATGCTTATTTGAAAATAGAG+AGG - Chr8:40954-40973 MsG0880041836.01.T01:CDS 25.0%
! ATTTGCATTGTATCTTGAAA+TGG - Chr8:42362-42381 MsG0880041836.01.T01:intron 25.0%
! CATAATGAGACATGATTAAA+CGG + Chr8:40840-40859 None:intergenic 25.0%
! CATAGACAGTAACAAAATTT+GGG + Chr8:43027-43046 None:intergenic 25.0%
! GGAATTGAAATATTGAGAAA+AGG + Chr8:40539-40558 None:intergenic 25.0%
! GTGTATGACATATATTATTC+AGG - Chr8:43983-44002 MsG0880041836.01.T01:intron 25.0%
! TCAAATTACATACCCTTAAA+TGG + Chr8:42544-42563 None:intergenic 25.0%
! TCCATAGTAATAGCTATTAT+GGG - Chr8:43501-43520 MsG0880041836.01.T01:CDS 25.0%
! TCTCTTATATCAATTGTAGA+TGG - Chr8:41426-41445 MsG0880041836.01.T01:intron 25.0%
! TGAAAAATTCTCAATTATGC+AGG + Chr8:42074-42093 None:intergenic 25.0%
! TGAGAAAATAAAGAGTTAGA+AGG + Chr8:43953-43972 None:intergenic 25.0%
! TTCCATAGTAATAGCTATTA+TGG - Chr8:43500-43519 MsG0880041836.01.T01:CDS 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG - Chr8:43867-43886 MsG0880041836.01.T01:intron 25.0%
! TTTAGGGATTGATATAACAT+TGG - Chr8:40879-40898 MsG0880041836.01.T01:CDS 25.0%
! TTTGCATTGTATCTTGAAAT+GGG - Chr8:42363-42382 MsG0880041836.01.T01:intron 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG - Chr8:43866-43885 MsG0880041836.01.T01:intron 25.0%
!! AACTAAAAGTCTCTTTTCAA+AGG + Chr8:41744-41763 None:intergenic 25.0%
!! TGATCTAGAGTGTAATAATT+AGG - Chr8:42691-42710 MsG0880041836.01.T01:intron 25.0%
!! TGCATAATTGAGAATTTTTC+AGG - Chr8:42073-42092 MsG0880041836.01.T01:CDS 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG + Chr8:43835-43854 None:intergenic 25.0%
!!! GTTTTATAGGTGTTATAAAG+AGG + Chr8:43119-43138 None:intergenic 25.0%
!!! TGTTTTCTTTAAGAAGTTGA+AGG - Chr8:42814-42833 MsG0880041836.01.T01:intron 25.0%
AAAGGAATCCTTTGTGTATA+AGG + Chr8:41845-41864 None:intergenic 30.0%
AAATTTGGGGAAAACTTCTA+TGG + Chr8:43013-43032 None:intergenic 30.0%
AACAGTTTCTACCAACAAAA+AGG + Chr8:42617-42636 None:intergenic 30.0%
AAGCAAAACAGAAGGATATT+TGG + Chr8:43422-43441 None:intergenic 30.0%
AATCACTCAGTTAATAGAAG+CGG + Chr8:41707-41726 None:intergenic 30.0%
AATGTTGAATGATAAGTCCA+AGG + Chr8:41132-41151 None:intergenic 30.0%
AATTAGTGTGTTTGGTTATG+CGG + Chr8:41263-41282 None:intergenic 30.0%
AATTCTCAAGCATGATTTCA+CGG + Chr8:42136-42155 None:intergenic 30.0%
AGAGAAGACTTACATAGTTA+GGG - Chr8:44079-44098 MsG0880041836.01.T01:intron 30.0%
AGGCTAAAAATCAATTCTCA+AGG + Chr8:41112-41131 None:intergenic 30.0%
ATGGCTAATGTGAAAAACAT+AGG + Chr8:43197-43216 None:intergenic 30.0%
ATTGTAGATTCACTTGATGT+TGG - Chr8:43307-43326 MsG0880041836.01.T01:intron 30.0%
ATTTAAAGGTTGAGAGAACA+TGG - Chr8:42438-42457 MsG0880041836.01.T01:intron 30.0%
CACTTTCATCTCTGTAAATT+TGG + Chr8:40502-40521 None:intergenic 30.0%
CATGATTAAACGGATATGTA+TGG + Chr8:40830-40849 None:intergenic 30.0%
CCAATTGCATTTATAACACA+AGG + Chr8:43628-43647 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG + Chr8:43028-43047 None:intergenic 30.0%
CCATAGTAATAGCTATTATG+GGG - Chr8:43502-43521 MsG0880041836.01.T01:CDS 30.0%
CCTTGTGTTATAAATGCAAT+TGG - Chr8:43625-43644 MsG0880041836.01.T01:intron 30.0%
CGATCCAATAAAAATGTCAT+CGG + Chr8:40915-40934 None:intergenic 30.0%
CTAGATATTGAGTATACGTT+TGG - Chr8:41003-41022 MsG0880041836.01.T01:CDS 30.0%
GTCTTCTCTGTATATAAACT+CGG + Chr8:44068-44087 None:intergenic 30.0%
GTTTCTAACCTTATACACAA+AGG - Chr8:41834-41853 MsG0880041836.01.T01:intron 30.0%
TACAATGGAATGTCTGATTT+AGG - Chr8:40784-40803 MsG0880041836.01.T01:CDS 30.0%
TGAAAATAGAGAGGAAAAGT+GGG - Chr8:40963-40982 MsG0880041836.01.T01:CDS 30.0%
TGCAATGAGAAATTTCAGAA+AGG + Chr8:43917-43936 None:intergenic 30.0%
TGTATAGTGATGCAATATGT+TGG + Chr8:42193-42212 None:intergenic 30.0%
TTGAAAATAGAGAGGAAAAG+TGG - Chr8:40962-40981 MsG0880041836.01.T01:CDS 30.0%
TTGTAGATTCACTTGATGTT+GGG - Chr8:43308-43327 MsG0880041836.01.T01:intron 30.0%
TTTAAAGGTTGAGAGAACAT+GGG - Chr8:42439-42458 MsG0880041836.01.T01:intron 30.0%
! AATTTTGTTACTGTCTATGG+TGG - Chr8:43028-43047 MsG0880041836.01.T01:intron 30.0%
! ATATGACTTGTCTTTCTCTA+CGG - Chr8:42212-42231 MsG0880041836.01.T01:intron 30.0%
! ATTTTGTTACTGTCTATGGT+GGG - Chr8:43029-43048 MsG0880041836.01.T01:intron 30.0%
! CCAAATTTTGTTACTGTCTA+TGG - Chr8:43025-43044 MsG0880041836.01.T01:intron 30.0%
!! GATAACTCAGCTTTTAACTA+TGG - Chr8:42949-42968 MsG0880041836.01.T01:intron 30.0%
!! TTTTTGTTGGTAGAAACTGT+TGG - Chr8:42616-42635 MsG0880041836.01.T01:intron 30.0%
!!! TGAGAATTGATTTTTAGCCT+TGG - Chr8:41112-41131 MsG0880041836.01.T01:intron 30.0%
AAACTGGACAGTTTAACAAC+TGG - Chr8:40345-40364 MsG0880041836.01.T01:CDS 35.0%
AAGACTTACATAGTTAGGGA+AGG - Chr8:44083-44102 MsG0880041836.01.T01:intron 35.0%
ACTGTGAAAAGCAAAACAGA+AGG + Chr8:43430-43449 None:intergenic 35.0%
AGTTCAAGTAAGCATATACC+AGG - Chr8:42865-42884 MsG0880041836.01.T01:intron 35.0%
ATACAACAGTCTATGCTTCT+CGG - Chr8:44582-44601 MsG0880041836.01.T01:intron 35.0%
ATACTACGAATCTGATTACC+CGG - Chr8:44496-44515 MsG0880041836.01.T01:intron 35.0%
ATATACCAGGGTATGAAAGT+TGG - Chr8:42878-42897 MsG0880041836.01.T01:intron 35.0%
ATGAAACATGTGGGATTTGT+AGG - Chr8:41483-41502 MsG0880041836.01.T01:CDS 35.0%
ATGCACAAGATGAAACATGT+GGG - Chr8:41474-41493 MsG0880041836.01.T01:CDS 35.0%
ATGTAACAACAAAGGTTGTG+TGG - Chr8:41285-41304 MsG0880041836.01.T01:CDS 35.0%
CAATCTATATTCAAGCTGCA+TGG - Chr8:44432-44451 MsG0880041836.01.T01:intron 35.0%
CAGAGAAGACTTACATAGTT+AGG - Chr8:44078-44097 MsG0880041836.01.T01:intron 35.0%
CCCCATAATAGCTATTACTA+TGG + Chr8:43505-43524 None:intergenic 35.0%
CCTCAAAGTTCGTCAAAATT+TGG - Chr8:44554-44573 MsG0880041836.01.T01:intron 35.0%
GAAAGTCCAAAGACAACATT+AGG + Chr8:41577-41596 None:intergenic 35.0%
GAAGGTAAAGTGACTTTGTT+TGG + Chr8:41180-41199 None:intergenic 35.0%
GTTCAAGTAAGCATATACCA+GGG - Chr8:42866-42885 MsG0880041836.01.T01:intron 35.0%
TAGGATTAGGAGGATTACAA+TGG - Chr8:40803-40822 MsG0880041836.01.T01:CDS 35.0%
TATATTTGCAGTGTCGTCTT+TGG - Chr8:41608-41627 MsG0880041836.01.T01:intron 35.0%
TCACAGTTTAGACACATACA+TGG - Chr8:44353-44372 MsG0880041836.01.T01:intron 35.0%
TCCATTGTTGCGAATAGAAA+CGG + Chr8:44400-44419 None:intergenic 35.0%
TGAAGCAAAAGAACAAACAG+AGG + Chr8:40582-40601 None:intergenic 35.0%
! ATGTCTGATTTAGGATTAGG+AGG - Chr8:40793-40812 MsG0880041836.01.T01:CDS 35.0%
! CACTTCTCCTTTTCAAATCT+TGG - Chr8:40474-40493 MsG0880041836.01.T01:CDS 35.0%
! CTACAAAGATGTGTTGTTAC+TGG - Chr8:41997-42016 MsG0880041836.01.T01:CDS 35.0%
! GATGCCGATGACATTTTTAT+TGG - Chr8:40908-40927 MsG0880041836.01.T01:CDS 35.0%
! GGAATGTCTGATTTAGGATT+AGG - Chr8:40790-40809 MsG0880041836.01.T01:CDS 35.0%
! TCTGGTCTTCATATCAAAGT+CGG - Chr8:43244-43263 MsG0880041836.01.T01:intron 35.0%
! TGACTTAGGTTTCTCCTTTT+GGG - Chr8:40664-40683 MsG0880041836.01.T01:CDS 35.0%
! TGCAGTGTTTTTCTTGACTT+AGG - Chr8:40650-40669 MsG0880041836.01.T01:CDS 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG - Chr8:44200-44219 MsG0880041836.01.T01:intron 35.0%
! TTGACTTAGGTTTCTCCTTT+TGG - Chr8:40663-40682 MsG0880041836.01.T01:CDS 35.0%
! TTTCATGCTACTTGCAGTTT+GGG - Chr8:42318-42337 MsG0880041836.01.T01:intron 35.0%
! TTTGGCTAAAAGTGAGTTGA+AGG + Chr8:41198-41217 None:intergenic 35.0%
! TTTGGGACCAAGATTTGAAA+AGG + Chr8:40484-40503 None:intergenic 35.0%
! TTTTCACATTAGCCATGTAG+AGG - Chr8:43201-43220 MsG0880041836.01.T01:intron 35.0%
! TTTTGTTACTGTCTATGGTG+GGG - Chr8:43030-43049 MsG0880041836.01.T01:intron 35.0%
!! CCAAATTTTGACGAACTTTG+AGG + Chr8:44557-44576 None:intergenic 35.0%
!! TTTGCTTTTCACAGTACACT+TGG - Chr8:43435-43454 MsG0880041836.01.T01:intron 35.0%
!! TTTTCATGCTACTTGCAGTT+TGG - Chr8:42317-42336 MsG0880041836.01.T01:intron 35.0%
AACATGTGGGATTTGTAGGA+TGG - Chr8:41487-41506 MsG0880041836.01.T01:CDS 40.0%
ACACAACACAACACAAACAC+TGG - Chr8:42761-42780 MsG0880041836.01.T01:intron 40.0%
AGAAACGAAGACAGACATCA+TGG + Chr8:42170-42189 None:intergenic 40.0%
AGACGACACTGCAAATATAG+TGG + Chr8:41607-41626 None:intergenic 40.0%
AGATCAGCAGATATCCCAAA+AGG + Chr8:40681-40700 None:intergenic 40.0%
AGGGGTCGATGAAGAAAATT+TGG - Chr8:43798-43817 MsG0880041836.01.T01:intron 40.0%
ATCAGGACAACATCCATCAA+AGG + Chr8:41513-41532 None:intergenic 40.0%
ATGAACAGCATCTCATCAAC+TGG + Chr8:44113-44132 None:intergenic 40.0%
ATGAAGACCAGACACACATA+TGG + Chr8:43236-43255 None:intergenic 40.0%
ATGGAAAACAAAACCTCTCC+AGG + Chr8:43486-43505 None:intergenic 40.0%
ATTAGGAGTAGCTTACTGAG+TGG + Chr8:41560-41579 None:intergenic 40.0%
ATTCGCAACAATGGAGAACA+TGG - Chr8:44405-44424 MsG0880041836.01.T01:intron 40.0%
ATTTGTAGGATGGCCTTTGA+TGG - Chr8:41497-41516 MsG0880041836.01.T01:CDS 40.0%
CAGTGTCGTCTTTGGTTAAT+CGG - Chr8:41616-41635 MsG0880041836.01.T01:intron 40.0%
CTTTAAATTGCCATTCCCGA+CGG + Chr8:42426-42445 None:intergenic 40.0%
GACCTACCTTCAATCAATGT+CGG - Chr8:43651-43670 MsG0880041836.01.T01:intron 40.0%
GATGCACAAGATGAAACATG+TGG - Chr8:41473-41492 MsG0880041836.01.T01:CDS 40.0%
GCTACTCCTAATGTTGTCTT+TGG - Chr8:41568-41587 MsG0880041836.01.T01:intron 40.0%
TACCTCACTCATAGCTTTCA+CGG + Chr8:44291-44310 None:intergenic 40.0%
TACTACGAATCTGATTACCC+GGG - Chr8:44497-44516 MsG0880041836.01.T01:intron 40.0%
TAGACACATACATGGTAGAC+AGG - Chr8:44361-44380 MsG0880041836.01.T01:intron 40.0%
TCCGTTTCTATTCGCAACAA+TGG - Chr8:44396-44415 MsG0880041836.01.T01:intron 40.0%
TCTATATTCAAGCTGCATGG+AGG - Chr8:44435-44454 MsG0880041836.01.T01:intron 40.0%
TCTTCTGATTGGAAACATGC+AGG - Chr8:43539-43558 MsG0880041836.01.T01:CDS 40.0%
TGAAGACCAGACACACATAT+GGG + Chr8:43235-43254 None:intergenic 40.0%
TGGAAAACAAAACCTCTCCA+GGG + Chr8:43485-43504 None:intergenic 40.0%
TGGAGGAAATGAGGATCAAA+AGG - Chr8:43680-43699 MsG0880041836.01.T01:intron 40.0%
TGGTGAAGAGTTGCTAACAT+GGG - Chr8:44220-44239 MsG0880041836.01.T01:intron 40.0%
TGTCCTGATTGTAAACTTCC+CGG - Chr8:41524-41543 MsG0880041836.01.T01:CDS 40.0%
TGTTAAACTGTCCAGTTTCC+CGG + Chr8:40343-40362 None:intergenic 40.0%
TTAGGAGTAGCTTACTGAGT+GGG + Chr8:41559-41578 None:intergenic 40.0%
TTCGCAACAATGGAGAACAT+GGG - Chr8:44406-44425 MsG0880041836.01.T01:intron 40.0%
TTTCACAGTACACTTGGTCA+GGG - Chr8:43441-43460 MsG0880041836.01.T01:intron 40.0%
TTTCTCCAACTTTCATACCC+TGG + Chr8:42886-42905 None:intergenic 40.0%
! AACCGACATTGATTGAAGGT+AGG + Chr8:43656-43675 None:intergenic 40.0%
! AATTTTCTTCATCGACCCCT+CGG + Chr8:43798-43817 None:intergenic 40.0%
! TGTGTTGTTACTGGCATACA+AGG - Chr8:42006-42025 MsG0880041836.01.T01:CDS 40.0%
! TTCACGGTTCTTGTTGATGA+TGG + Chr8:44275-44294 None:intergenic 40.0%
! TTCATGCTACTTGCAGTTTG+GGG - Chr8:42319-42338 MsG0880041836.01.T01:intron 40.0%
! TTTTCACAGTACACTTGGTC+AGG - Chr8:43440-43459 MsG0880041836.01.T01:intron 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG - Chr8:44146-44165 MsG0880041836.01.T01:intron 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG - Chr8:44184-44203 MsG0880041836.01.T01:intron 40.0%
!! TCATTGAGAGCACTGAAATC+AGG + Chr8:44686-44705 None:intergenic 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG - Chr8:44188-44207 MsG0880041836.01.T01:intron 40.0%
!!! TTTTTGAGTTCTCTACACGC+AGG - Chr8:41872-41891 MsG0880041836.01.T01:intron 40.0%
AAACAAAACCTCTCCAGGGT+AGG + Chr8:43481-43500 None:intergenic 45.0%
AACCGTGAAAGCTATGAGTG+AGG - Chr8:44286-44305 MsG0880041836.01.T01:intron 45.0%
ACGCAGGAGAATGAATCACT+CGG - Chr8:41888-41907 MsG0880041836.01.T01:intron 45.0%
AGAAGTGGCTTCTTCAACAG+AGG - Chr8:44173-44192 MsG0880041836.01.T01:intron 45.0%
AGAGTTGCTAACATGGGCAT+TGG - Chr8:44226-44245 MsG0880041836.01.T01:intron 45.0%
AGTACCAAGTTCAAGAGAGC+TGG - Chr8:44637-44656 MsG0880041836.01.T01:intron 45.0%
CGTCGGGAATGGCAATTTAA+AGG - Chr8:42424-42443 MsG0880041836.01.T01:intron 45.0%
CTTGCAGAATCATCACTTCC+CGG + Chr8:44518-44537 None:intergenic 45.0%
GAAAGCTATGAGTGAGGTAG+AGG - Chr8:44292-44311 MsG0880041836.01.T01:intron 45.0%
GAGATGCGATGCAGCTTATT+AGG + Chr8:40446-40465 None:intergenic 45.0%
GAGATGCTGTTCATCATTCG+TGG - Chr8:44119-44138 MsG0880041836.01.T01:intron 45.0%
GGGAAGTGATGATTCTGCAA+GGG - Chr8:44517-44536 MsG0880041836.01.T01:intron 45.0%
GGGTGTTCAACCACTTGTAT+TGG + Chr8:43777-43796 None:intergenic 45.0%
GGTGGGGACTTCAGAATTTA+AGG - Chr8:43046-43065 MsG0880041836.01.T01:intron 45.0%
GGTTCCTCTCTTTGCTAACA+TGG - Chr8:44004-44023 MsG0880041836.01.T01:intron 45.0%
GTCCTGATTGTAAACTTCCC+GGG - Chr8:41525-41544 MsG0880041836.01.T01:CDS 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG - Chr8:43528-43547 MsG0880041836.01.T01:CDS 45.0%
GTGGTGAAGAGTTGCTAACA+TGG - Chr8:44219-44238 MsG0880041836.01.T01:intron 45.0%
TCCTGATTGTAAACTTCCCG+GGG - Chr8:41526-41545 MsG0880041836.01.T01:CDS 45.0%
TCGTCCATGTTAGCAAAGAG+AGG + Chr8:44011-44030 None:intergenic 45.0%
TTCACAGTACACTTGGTCAG+GGG - Chr8:43442-43461 MsG0880041836.01.T01:intron 45.0%
TTCACCAGCTCTCTTGAACT+TGG + Chr8:44644-44663 None:intergenic 45.0%
TTGCAGAATCATCACTTCCC+GGG + Chr8:44517-44536 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG + Chr8:44678-44697 None:intergenic 45.0%
! ATGCTGTTGCTTCATGGACT+TGG - Chr8:41450-41469 MsG0880041836.01.T01:intron 45.0%
! ATTTTCTTCATCGACCCCTC+GGG + Chr8:43797-43816 None:intergenic 45.0%
! GACGAACCGACATTGATTGA+AGG + Chr8:43660-43679 None:intergenic 45.0%
! GCACTGAAATCAGGTTCTGA+GGG + Chr8:44677-44696 None:intergenic 45.0%
! TGCTGTTGCTTCATGGACTT+GGG - Chr8:41451-41470 MsG0880041836.01.T01:intron 45.0%
! TTTGACGAACTTTGAGGACC+CGG + Chr8:44551-44570 None:intergenic 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG + Chr8:44671-44690 None:intergenic 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG + Chr8:44670-44689 None:intergenic 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG - Chr8:44158-44177 MsG0880041836.01.T01:intron 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG - Chr8:44447-44466 MsG0880041836.01.T01:intron 45.0%
!! GAGAGTGTTACTACAGATGG+TGG - Chr8:44149-44168 MsG0880041836.01.T01:intron 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG - Chr8:43660-43679 MsG0880041836.01.T01:intron 45.0%
ACAAGTGGTTGAACACCCGA+GGG - Chr8:43779-43798 MsG0880041836.01.T01:intron 50.0%
AGCGTCTGACTCTTTCCCTT+AGG + Chr8:43750-43769 None:intergenic 50.0%
CATGTGCCCATATGTGTGTC+TGG - Chr8:43226-43245 MsG0880041836.01.T01:intron 50.0%
CATTGGGCAATGTGCTTGTG+AGG + Chr8:42401-42420 None:intergenic 50.0%
CGGGAAGTGATGATTCTGCA+AGG - Chr8:44516-44535 MsG0880041836.01.T01:intron 50.0%
CTGACTCTTTCCCTTAGGTC+CGG + Chr8:43745-43764 None:intergenic 50.0%
CTTCTGACTAGTACCTACCC+TGG - Chr8:43465-43484 MsG0880041836.01.T01:intron 50.0%
GACGCTACGACCAATACAAG+TGG - Chr8:43764-43783 MsG0880041836.01.T01:intron 50.0%
TACAAGTGGTTGAACACCCG+AGG - Chr8:43778-43797 MsG0880041836.01.T01:intron 50.0%
TCCCCGGGAAGTTTACAATC+AGG + Chr8:41530-41549 None:intergenic 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG - Chr8:44459-44478 MsG0880041836.01.T01:intron 50.0%
! GATGGCATGCTGTTGCTTCA+TGG - Chr8:41444-41463 MsG0880041836.01.T01:intron 50.0%
! TGATGATTCTGCAAGGGCGT+TGG - Chr8:44523-44542 MsG0880041836.01.T01:intron 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG - Chr8:44463-44482 MsG0880041836.01.T01:intron 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG - Chr8:43663-43682 MsG0880041836.01.T01:intron 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG - Chr8:44602-44621 MsG0880041836.01.T01:intron 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG - Chr8:44453-44472 MsG0880041836.01.T01:intron 50.0%
!!! GGCAAGCTTGCTGCAGATTT+TGG + Chr8:44254-44273 None:intergenic 50.0%
ACATTGCCCAATGTGCCGTC+GGG - Chr8:42408-42427 MsG0880041836.01.T01:intron 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG + Chr8:43742-43761 None:intergenic 55.0%
CAAGTGGTTGAACACCCGAG+GGG - Chr8:43780-43799 MsG0880041836.01.T01:intron 55.0%
CACATTGCCCAATGTGCCGT+CGG - Chr8:42407-42426 MsG0880041836.01.T01:intron 55.0%
CGGTTCGTCTGGAGGAAATG+AGG - Chr8:43671-43690 MsG0880041836.01.T01:intron 55.0%
CGTGCATCTGTGTGTGGAAC+CGG - Chr8:40321-40340 MsG0880041836.01.T01:CDS 55.0%
CTTGCTTCCTCCGGACCTAA+GGG - Chr8:43732-43751 MsG0880041836.01.T01:intron 55.0%
GACTAGTACCTACCCTGGAG+AGG - Chr8:43470-43489 MsG0880041836.01.T01:CDS 55.0%
GCATCATCGCTTGCTTCCTC+CGG - Chr8:43723-43742 MsG0880041836.01.T01:intron 55.0%
GCGATGATGCATCCACTGCT+CGG + Chr8:43713-43732 None:intergenic 55.0%
GTGCATCTGTGTGTGGAACC+GGG - Chr8:40322-40341 MsG0880041836.01.T01:CDS 55.0%
TGGGCACATGCACCTCTACA+TGG + Chr8:43216-43235 None:intergenic 55.0%
TGTGTGTGGAACCGGGAAAC+TGG - Chr8:40329-40348 MsG0880041836.01.T01:CDS 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG - Chr8:44529-44548 MsG0880041836.01.T01:intron 55.0%
AAGGCGAAGGCGAAGGAAGG+AGG - Chr8:44466-44485 MsG0880041836.01.T01:intron 60.0%
ACTGAGTGGGCAGTCATCCC+CGG + Chr8:41546-41565 None:intergenic 60.0%
GCCATTCCCGACGGCACATT+GGG + Chr8:42417-42436 None:intergenic 60.0%
GCTTGCTTCCTCCGGACCTA+AGG - Chr8:43731-43750 MsG0880041836.01.T01:intron 60.0%
TGCCATTCCCGACGGCACAT+TGG + Chr8:42418-42437 None:intergenic 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG - Chr8:43698-43717 MsG0880041836.01.T01:intron 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG - Chr8:44530-44549 MsG0880041836.01.T01:intron 60.0%
CTGAGTGGGCAGTCATCCCC+GGG + Chr8:41545-41564 None:intergenic 65.0%
GCCCAATGTGCCGTCGGGAA+TGG - Chr8:42413-42432 MsG0880041836.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 40317 44715 40317 ID=MsG0880041836.01;Name=MsG0880041836.01
Chr8 mRNA 40317 44715 40317 ID=MsG0880041836.01.T01;Parent=MsG0880041836.01;Name=MsG0880041836.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|0.83|1|1|6|0|465
Chr8 exon 44678 44715 44678 ID=MsG0880041836.01.T01:exon:770;Parent=MsG0880041836.01.T01
Chr8 exon 43469 43587 43469 ID=MsG0880041836.01.T01:exon:771;Parent=MsG0880041836.01.T01
Chr8 exon 41965 42145 41965 ID=MsG0880041836.01.T01:exon:772;Parent=MsG0880041836.01.T01
Chr8 exon 41472 41583 41472 ID=MsG0880041836.01.T01:exon:773;Parent=MsG0880041836.01.T01
Chr8 exon 41144 41380 41144 ID=MsG0880041836.01.T01:exon:774;Parent=MsG0880041836.01.T01
Chr8 exon 40317 41027 40317 ID=MsG0880041836.01.T01:exon:775;Parent=MsG0880041836.01.T01
Chr8 CDS 44678 44715 44678 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Chr8 CDS 43469 43587 43469 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Chr8 CDS 41965 42145 41965 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Chr8 CDS 41472 41583 41472 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Chr8 CDS 41144 41380 41144 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Chr8 CDS 40317 41027 40317 ID=MsG0880041836.01.T01:cds;Parent=MsG0880041836.01.T01
Gene Sequence

>MsG0880041836.01.T01

ATGTCGTGCATCTGTGTGTGGAACCGGGAAACTGGACAATGGCATGCTGTTGCTTCATGGACTTGGGATGCACAAGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGATTGTAAACTTCCCGGGGATGACTGCCCACTCAGGTATGAAAGTTGGAGAAATGTCAGTCAATCTGTGCTTAAAAGTAAATGCTTTGTTGAAGATGATAACTCAGCTTTTAACTATGGAATCTTTTCTCAAGCTATAGAATCTCATATTGTTGCTTCCATAGAAGTTTTCCCCAAATTTTGTTACTGTCTATGGTGGGGACTTCAGAATTTAAGTACACTTGGTCAGGGGCTTCTGACTAGTACCTACCCTGGAGAGGTTTTGTTTTCCATAGTAATAGCTATTATGGGGCTTGTGCTCTTTGCTCTTCTGATTGGAAACATGCAGACCTACCTTCAATCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCCGAGCAGTGGATGCATCATCGCTTGCTTCCTCCGGACCTAAGGGAAAGAGTCAGACGCTACGACCAATACAAGTGGTTGAACACCCGAGGGGTCGATGAAGAAAATTTGGTTCAGAGTCTTCCAAAAGATCTTAGAAGAGATATCAAACGTCATCTTTGTTTGAATTTAGTCAGAAGGGTTCCTCTCTTTGCTAACATGGACGAACGCTTGCTTGACGCAAAATGTGAGCGATTGAAACCGAGTTTATATACAGAGAAGACTTACATAGTTAGGGAAGGTGATCCAGTTGATGAGATGCTGTTCATCATTCGTGGTCGTCTAGAGAGTGTTACTACAGATGGTGGAAGAAGTGGCTTCTTCAACAGAGGAGTTTTGAAGGAAGGTGATTTTTGTGGTGAAGAGTTGCTAACATGGGCATTGGATCCAAAATCTGCAGCAAGCTTGCCATCATCAACAAGAACCGTGAAAGCTATGAGTGAGGTAGAGGCATTTGCTTTAGAAGCAGAGGAATTGAAGTTTGTTGCATCACAGTTTAGACACATACATGGTAGACAGGTTCAGCATACATTCCGTTTCTATTCGCAACAATGGAGAACATGGGCTGCAATCTATATTCAAGCTGCATGGAGGAAGCATTTAAGGCGAAGGCGAAGGAAGGAGGAAGAAGAATACTACGAATCTGATTACCCGGGAAGTGATGATTCTGCAAGGGCGTTGGTTCCGGGTCCTCAAAGTTCGTCAAAATTTGGACTTAATACAACAGTCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACTTCAAGTACCAAGTTCAAGAGAGCTGGTGAATATCCCAAAGCCCTCAGAACCTGATTTCAGTGCTCTCAATGATGAAGAGTGA

Protein sequence

>MsG0880041836.01.T01

MSCICVWNRETGQWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLRYESWRNVSQSVLKSKCFVEDDNSAFNYGIFSQAIESHIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFALLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPDLRERVRRYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAKCERLKPSLYTEKTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSAASLPSSTRTVKAMSEVEAFALEAEELKFVASQFRHIHGRQVQHTFRFYSQQWRTWAAIYIQAAWRKHLRRRRRKEEEEYYESDYPGSDDSARALVPGPQSSSKFGLNTTVYASRFAANLRGHRLQVPSSRELVNIPKPSEPDFSALNDEE*