Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021276.01.T01 | XP_039686317.1 | 88.889 | 63 | 6 | 1 | 17 | 79 | 221 | 282 | 1.21E-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021276.01.T01 | G7ISR2 | 88.889 | 63 | 6 | 1 | 17 | 79 | 221 | 282 | 7.33e-28 | 113 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0480021276.01 | 0.829161 | 6.008606e-55 | 6.100154e-52 |
| MsG0080047944.01 | MsG0480021276.01 | 0.803782 | 2.957411e-49 | 1.499378e-46 |
| MsG0080047957.01 | MsG0480021276.01 | 0.805098 | 1.573027e-49 | 8.249615e-47 |
| MsG0080048874.01 | MsG0480021276.01 | 0.838402 | 2.937298e-57 | 3.929922e-54 |
| MsG0180000065.01 | MsG0480021276.01 | 0.816653 | 4.949393e-52 | 3.527847e-49 |
| MsG0180000470.01 | MsG0480021276.01 | 0.857063 | 2.106026e-62 | 5.132659e-59 |
| MsG0180001063.01 | MsG0480021276.01 | 0.804096 | 2.544764e-49 | 1.300630e-46 |
| MsG0180001884.01 | MsG0480021276.01 | 0.816363 | 5.746738e-52 | 4.063796e-49 |
| MsG0180002195.01 | MsG0480021276.01 | 0.819464 | 1.145389e-52 | 8.820949e-50 |
| MsG0180002282.01 | MsG0480021276.01 | 0.814937 | 1.194736e-51 | 8.124831e-49 |
| MsG0180002842.01 | MsG0480021276.01 | 0.806919 | 6.511297e-50 | 3.578070e-47 |
| MsG0180002952.01 | MsG0480021276.01 | 0.811531 | 6.683194e-51 | 4.147174e-48 |
| MsG0180003669.01 | MsG0480021276.01 | 0.813522 | 2.453236e-51 | 1.605750e-48 |
| MsG0180004264.01 | MsG0480021276.01 | 0.866129 | 3.572776e-65 | 1.191225e-61 |
| MsG0180004275.01 | MsG0480021276.01 | 0.802855 | 4.601937e-49 | 2.278355e-46 |
| MsG0180004295.01 | MsG0480021276.01 | 0.801235 | 9.910521e-49 | 4.708773e-46 |
| MsG0180004372.01 | MsG0480021276.01 | 0.805759 | 1.143231e-49 | 6.098738e-47 |
| MsG0180004465.01 | MsG0480021276.01 | 0.810113 | 1.354763e-50 | 8.097228e-48 |
| MsG0180004789.01 | MsG0480021276.01 | 0.808613 | 2.842246e-50 | 1.632450e-47 |
| MsG0180005050.01 | MsG0480021276.01 | 0.805906 | 1.064559e-49 | 5.700259e-47 |
| MsG0180005185.01 | MsG0480021276.01 | 0.813213 | 2.867375e-51 | 1.860989e-48 |
| MsG0180005285.01 | MsG0480021276.01 | 0.803134 | 4.029611e-49 | 2.009159e-46 |
| MsG0180005705.01 | MsG0480021276.01 | 0.809240 | 2.086288e-50 | 1.218543e-47 |
| MsG0180005842.01 | MsG0480021276.01 | 0.817347 | 3.456839e-52 | 2.511160e-49 |
| MsG0180006134.01 | MsG0480021276.01 | 0.814468 | 1.517576e-51 | 1.019150e-48 |
| MsG0180006207.01 | MsG0480021276.01 | 0.819317 | 1.237658e-52 | 9.491143e-50 |
| MsG0280006375.01 | MsG0480021276.01 | 0.815304 | 9.900230e-52 | 6.800535e-49 |
| MsG0280010698.01 | MsG0480021276.01 | 0.813635 | 2.316066e-51 | 1.520589e-48 |
| MsG0280011032.01 | MsG0480021276.01 | 0.834322 | 3.205706e-56 | 3.791473e-53 |
| MsG0380012009.01 | MsG0480021276.01 | 0.819650 | 1.039167e-52 | 8.044090e-50 |
| MsG0380012330.01 | MsG0480021276.01 | 0.831477 | 1.632306e-55 | 1.773493e-52 |
| MsG0380012361.01 | MsG0480021276.01 | 0.800253 | 1.571642e-48 | 7.283753e-46 |
| MsG0380012403.01 | MsG0480021276.01 | 0.815016 | 1.147191e-51 | 7.818656e-49 |
| MsG0380012460.01 | MsG0480021276.01 | 0.809491 | 1.843676e-50 | 1.083973e-47 |
| MsG0380013176.01 | MsG0480021276.01 | 0.800204 | 1.608445e-48 | 7.444849e-46 |
| MsG0380013363.01 | MsG0480021276.01 | 0.818507 | 1.891188e-52 | 1.418307e-49 |
| MsG0380014135.01 | MsG0480021276.01 | 0.811934 | 5.462128e-51 | 3.425589e-48 |
| MsG0380014251.01 | MsG0480021276.01 | 0.807169 | 5.764087e-50 | 3.188099e-47 |
| MsG0380014573.01 | MsG0480021276.01 | 0.839006 | 2.050953e-57 | 2.795028e-54 |
| MsG0380014701.01 | MsG0480021276.01 | 0.809309 | 2.016510e-50 | 1.179876e-47 |
| MsG0380014894.01 | MsG0480021276.01 | 0.803170 | 3.961966e-49 | 1.977338e-46 |
| MsG0480018576.01 | MsG0480021276.01 | 0.801262 | 9.780807e-49 | 4.650350e-46 |
| MsG0480018637.01 | MsG0480021276.01 | 0.805385 | 1.369426e-49 | 7.235013e-47 |
| MsG0480018778.01 | MsG0480021276.01 | 0.805669 | 1.193745e-49 | 6.353285e-47 |
| MsG0480019297.01 | MsG0480021276.01 | 0.808143 | 3.579056e-50 | 2.030700e-47 |
| MsG0480019970.01 | MsG0480021276.01 | 0.800425 | 1.450061e-48 | 6.749875e-46 |
| MsG0480020634.01 | MsG0480021276.01 | 0.812662 | 3.786672e-51 | 2.421921e-48 |
| MsG0480020964.01 | MsG0480021276.01 | 0.804193 | 2.429225e-49 | 1.244626e-46 |
| MsG0480021274.01 | MsG0480021276.01 | 0.863303 | 2.740918e-64 | 8.270977e-61 |
| MsG0480021276.01 | MsG0480021536.01 | 0.812823 | 3.492047e-51 | 2.242750e-48 |
| MsG0480021276.01 | MsG0480021784.01 | 0.801688 | 8.000937e-49 | 3.845033e-46 |
| MsG0480021276.01 | MsG0480021853.01 | 0.820763 | 5.776927e-53 | 4.612343e-50 |
| MsG0480021276.01 | MsG0480022213.01 | -0.828731 | 7.636715e-55 | 7.654883e-52 |
| MsG0480021276.01 | MsG0480022259.01 | 0.855764 | 5.067022e-62 | 1.182661e-58 |
| MsG0480021276.01 | MsG0480022262.01 | 0.861305 | 1.126628e-63 | 3.173846e-60 |
| MsG0480021276.01 | MsG0480022551.01 | 0.805857 | 1.090170e-49 | 5.830281e-47 |
| MsG0480021276.01 | MsG0480022615.01 | -0.802270 | 6.075193e-49 | 2.963244e-46 |
| MsG0480021276.01 | MsG0480023015.01 | 0.803127 | 4.042615e-49 | 2.015298e-46 |
| MsG0480021276.01 | MsG0480023248.01 | 0.801011 | 1.101267e-48 | 5.203195e-46 |
| MsG0480021276.01 | MsG0480023654.01 | 0.827746 | 1.319746e-54 | 1.285497e-51 |
| MsG0480021276.01 | MsG0480023707.01 | 0.800572 | 1.353187e-48 | 6.322301e-46 |
| MsG0480021276.01 | MsG0480023835.01 | 0.804732 | 1.875394e-49 | 9.744079e-47 |
| MsG0480021276.01 | MsG0580024305.01 | 0.826864 | 2.146695e-54 | 2.037880e-51 |
| MsG0480021276.01 | MsG0580024306.01 | 0.824801 | 6.629717e-54 | 5.934689e-51 |
| MsG0480021276.01 | MsG0580024418.01 | 0.801401 | 9.163460e-49 | 4.371912e-46 |
| MsG0480021276.01 | MsG0580024690.01 | 0.801495 | 8.765281e-49 | 4.192069e-46 |
| MsG0480021276.01 | MsG0580024781.01 | 0.831340 | 1.764952e-55 | 1.909640e-52 |
| MsG0480021276.01 | MsG0580025022.01 | 0.841392 | 4.886581e-58 | 7.170200e-55 |
| MsG0480021276.01 | MsG0580025381.01 | 0.816541 | 5.242733e-52 | 3.725315e-49 |
| MsG0480021276.01 | MsG0580025448.01 | 0.810905 | 9.136244e-51 | 5.576573e-48 |
| MsG0480021276.01 | MsG0580025758.01 | 0.823935 | 1.059371e-53 | 9.250892e-51 |
| MsG0480021276.01 | MsG0580027152.01 | 0.807464 | 4.991916e-50 | 2.782351e-47 |
| MsG0480021276.01 | MsG0580027548.01 | 0.802758 | 4.818181e-49 | 2.379578e-46 |
| MsG0480021276.01 | MsG0580027745.01 | 0.810087 | 1.372219e-50 | 8.195446e-48 |
| MsG0480021276.01 | MsG0580027827.01 | 0.803502 | 3.380417e-49 | 1.701624e-46 |
| MsG0480021276.01 | MsG0580027832.01 | 0.806448 | 8.186318e-50 | 4.444477e-47 |
| MsG0480021276.01 | MsG0580027833.01 | 0.846803 | 1.726446e-59 | 3.006990e-56 |
| MsG0480021276.01 | MsG0580027947.01 | 0.814837 | 1.256981e-51 | 8.525373e-49 |
| MsG0480021276.01 | MsG0580028170.01 | 0.814981 | 1.168000e-51 | 7.952782e-49 |
| MsG0480021276.01 | MsG0580028990.01 | 0.830504 | 2.829882e-55 | 2.987079e-52 |
| MsG0480021276.01 | MsG0580029008.01 | 0.801955 | 7.051245e-49 | 3.411728e-46 |
| MsG0480021276.01 | MsG0580029554.01 | 0.815933 | 7.172859e-52 | 5.012692e-49 |
| MsG0480021276.01 | MsG0680030316.01 | 0.801817 | 7.529639e-49 | 3.630512e-46 |
| MsG0480021276.01 | MsG0680030561.01 | 0.807283 | 5.452614e-50 | 3.024852e-47 |
| MsG0480021276.01 | MsG0680031379.01 | 0.813778 | 2.154625e-51 | 1.420045e-48 |
| MsG0480021276.01 | MsG0680032157.01 | 0.800738 | 1.252010e-48 | 5.874201e-46 |
| MsG0480021276.01 | MsG0680032355.01 | 0.804590 | 2.007702e-49 | 1.039246e-46 |
| MsG0480021276.01 | MsG0680032801.01 | 0.804366 | 2.235974e-49 | 1.150755e-46 |
| MsG0480021276.01 | MsG0680033228.01 | 0.810823 | 9.518687e-51 | 5.797054e-48 |
| MsG0480021276.01 | MsG0680033412.01 | 0.811384 | 7.192197e-51 | 4.445592e-48 |
| MsG0480021276.01 | MsG0680034565.01 | 0.802284 | 6.035934e-49 | 2.945221e-46 |
| MsG0480021276.01 | MsG0680035444.01 | 0.809135 | 2.196977e-50 | 1.279587e-47 |
| MsG0480021276.01 | MsG0680035573.01 | 0.831364 | 1.740679e-55 | 1.884781e-52 |
| MsG0480021276.01 | MsG0680035692.01 | 0.823260 | 1.524455e-53 | 1.305986e-50 |
| MsG0480021276.01 | MsG0680035909.01 | 0.806802 | 6.893317e-50 | 3.776531e-47 |
| MsG0480021276.01 | MsG0780035948.01 | 0.800791 | 1.220811e-48 | 5.735373e-46 |
| MsG0480021276.01 | MsG0780036080.01 | 0.834329 | 3.191607e-56 | 3.775520e-53 |
| MsG0480021276.01 | MsG0780036201.01 | 0.810324 | 1.219889e-50 | 7.331109e-48 |
| MsG0480021276.01 | MsG0780036477.01 | 0.809585 | 1.759493e-50 | 1.037146e-47 |
| MsG0480021276.01 | MsG0780037457.01 | 0.804300 | 2.308177e-49 | 1.185882e-46 |
| MsG0480021276.01 | MsG0780037512.01 | 0.802077 | 6.655882e-49 | 3.230535e-46 |
| MsG0480021276.01 | MsG0780037845.01 | 0.807513 | 4.872924e-50 | 2.719500e-47 |
| MsG0480021276.01 | MsG0780038401.01 | 0.802888 | 4.529343e-49 | 2.244324e-46 |
| MsG0480021276.01 | MsG0780038439.01 | 0.825032 | 5.846743e-54 | 5.268394e-51 |
| MsG0480021276.01 | MsG0780038602.01 | 0.817392 | 3.376541e-52 | 2.455954e-49 |
| MsG0480021276.01 | MsG0780039252.01 | 0.812652 | 3.806976e-51 | 2.434170e-48 |
| MsG0480021276.01 | MsG0780039631.01 | 0.803469 | 3.435319e-49 | 1.727670e-46 |
| MsG0480021276.01 | MsG0780040704.01 | 0.813140 | 2.975199e-51 | 1.927129e-48 |
| MsG0480021276.01 | MsG0780040788.01 | 0.802949 | 4.399735e-49 | 2.183420e-46 |
| MsG0480021276.01 | MsG0780041456.01 | 0.812190 | 4.803537e-51 | 3.033857e-48 |
| MsG0480021276.01 | MsG0880041836.01 | 0.812089 | 5.051668e-51 | 3.181821e-48 |
| MsG0480021276.01 | MsG0880042232.01 | 0.806360 | 8.545306e-50 | 4.628737e-47 |
| MsG0480021276.01 | MsG0880042294.01 | 0.805750 | 1.148246e-49 | 6.124129e-47 |
| MsG0480021276.01 | MsG0880042314.01 | 0.801251 | 9.832972e-49 | 4.673851e-46 |
| MsG0480021276.01 | MsG0880042404.01 | 0.808007 | 3.826000e-50 | 2.162947e-47 |
| MsG0480021276.01 | MsG0880042698.01 | 0.815859 | 7.450034e-52 | 5.195797e-49 |
| MsG0480021276.01 | MsG0880042966.01 | 0.806789 | 6.934185e-50 | 3.797736e-47 |
| MsG0480021276.01 | MsG0880043292.01 | 0.813705 | 2.235873e-51 | 1.470762e-48 |
| MsG0480021276.01 | MsG0880043591.01 | 0.807798 | 4.239220e-50 | 2.383390e-47 |
| MsG0480021276.01 | MsG0880044574.01 | 0.834169 | 3.501843e-56 | 4.121765e-53 |
| MsG0480021276.01 | MsG0880045372.01 | 0.834483 | 2.919869e-56 | 3.469959e-53 |
| MsG0480021276.01 | MsG0880045736.01 | 0.810356 | 1.200734e-50 | 7.222036e-48 |
| MsG0480021276.01 | MsG0880045937.01 | 0.809203 | 2.124624e-50 | 1.239699e-47 |
| MsG0480021276.01 | MsG0880046020.01 | 0.808235 | 3.421929e-50 | 1.946209e-47 |
| MsG0380014981.01 | MsG0480021276.01 | 0.815380 | 9.524509e-52 | 6.556142e-49 |
| MsG0380015677.01 | MsG0480021276.01 | 0.805789 | 1.126638e-49 | 6.014658e-47 |
| MsG0380015720.01 | MsG0480021276.01 | 0.801836 | 7.462684e-49 | 3.599963e-46 |
| MsG0380016475.01 | MsG0480021276.01 | 0.842609 | 2.329568e-58 | 3.551065e-55 |
| MsG0380016624.01 | MsG0480021276.01 | 0.806331 | 8.664321e-50 | 4.689979e-47 |
| MsG0380016910.01 | MsG0480021276.01 | 0.807101 | 5.957009e-50 | 3.288884e-47 |
| MsG0380017060.01 | MsG0480021276.01 | 0.812670 | 3.772780e-51 | 2.413501e-48 |
| MsG0380017140.01 | MsG0480021276.01 | 0.812322 | 4.494679e-51 | 2.848933e-48 |
| MsG0380017233.01 | MsG0480021276.01 | 0.810453 | 1.143924e-50 | 6.898038e-48 |
| MsG0380018009.01 | MsG0480021276.01 | 0.815591 | 8.545825e-52 | 5.916799e-49 |
| MsG0480018121.01 | MsG0480021276.01 | 0.803231 | 3.848229e-49 | 1.923508e-46 |
| MsG0480018163.01 | MsG0480021276.01 | 0.822868 | 1.880975e-53 | 1.593803e-50 |
| MsG0280006976.01 | MsG0480021276.01 | 0.807618 | 4.629653e-50 | 2.590642e-47 |
| MsG0280007072.01 | MsG0480021276.01 | 0.802284 | 6.035427e-49 | 2.944985e-46 |
| MsG0280007241.01 | MsG0480021276.01 | 0.800348 | 1.503254e-48 | 6.983718e-46 |
| MsG0280008615.01 | MsG0480021276.01 | 0.821417 | 4.082109e-53 | 3.319138e-50 |
| MsG0280008894.01 | MsG0480021276.01 | 0.809642 | 1.710716e-50 | 1.009943e-47 |
| MsG0280008970.01 | MsG0480021276.01 | 0.812376 | 4.373934e-51 | 2.776347e-48 |
| MsG0280009748.01 | MsG0480021276.01 | 0.820275 | 7.474452e-53 | 5.887564e-50 |
| MsG0280009986.01 | MsG0480021276.01 | 0.801224 | 9.960383e-49 | 4.731125e-46 |
| MsG0280010443.01 | MsG0480021276.01 | 0.839449 | 1.573742e-57 | 2.174101e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021276.01.T01 | MTR_2g028130 | 88.889 | 63 | 6 | 1 | 17 | 79 | 221 | 282 | 1.86e-31 | 113 |
| MsG0480021276.01.T01 | MTR_1g068835 | 74.194 | 62 | 14 | 2 | 18 | 79 | 199 | 258 | 2.40e-22 | 88.6 |
| MsG0480021276.01.T01 | MTR_0667s0010 | 72.059 | 68 | 16 | 3 | 17 | 82 | 210 | 276 | 3.74e-22 | 88.2 |
| MsG0480021276.01.T01 | MTR_2g028140 | 65.672 | 67 | 20 | 2 | 15 | 79 | 223 | 288 | 8.76e-22 | 87.4 |
| MsG0480021276.01.T01 | MTR_2g028160 | 67.188 | 64 | 18 | 2 | 18 | 79 | 222 | 284 | 9.02e-22 | 87.4 |
| MsG0480021276.01.T01 | MTR_1g068875 | 70.769 | 65 | 17 | 2 | 18 | 82 | 198 | 260 | 1.51e-21 | 86.3 |
| MsG0480021276.01.T01 | MTR_8g099460 | 69.355 | 62 | 14 | 2 | 18 | 79 | 212 | 268 | 2.09e-21 | 86.3 |
| MsG0480021276.01.T01 | MTR_2g426070 | 72.581 | 62 | 13 | 2 | 18 | 79 | 224 | 281 | 3.28e-21 | 85.5 |
| MsG0480021276.01.T01 | MTR_2g028110 | 63.077 | 65 | 20 | 2 | 15 | 79 | 204 | 264 | 1.30e-20 | 84.0 |
| MsG0480021276.01.T01 | MTR_1g068860 | 66.129 | 62 | 19 | 2 | 18 | 79 | 201 | 260 | 2.00e-20 | 83.2 |
| MsG0480021276.01.T01 | MTR_2g025420 | 68.182 | 66 | 16 | 3 | 18 | 79 | 225 | 289 | 2.18e-20 | 83.6 |
| MsG0480021276.01.T01 | MTR_4g070550 | 64.062 | 64 | 20 | 2 | 18 | 79 | 220 | 282 | 2.37e-20 | 83.2 |
| MsG0480021276.01.T01 | MTR_2g426090 | 70.312 | 64 | 15 | 2 | 18 | 81 | 220 | 279 | 3.32e-20 | 82.8 |
| MsG0480021276.01.T01 | MTR_2g031680 | 59.494 | 79 | 23 | 4 | 6 | 82 | 191 | 262 | 2.14e-19 | 80.5 |
| MsG0480021276.01.T01 | MTR_2g024100 | 65.152 | 66 | 18 | 3 | 18 | 79 | 213 | 277 | 2.65e-18 | 77.4 |
| MsG0480021276.01.T01 | MTR_2g025960 | 60.000 | 65 | 21 | 2 | 18 | 82 | 126 | 185 | 6.05e-18 | 75.9 |
| MsG0480021276.01.T01 | MTR_2g037520 | 66.154 | 65 | 18 | 2 | 18 | 82 | 2 | 62 | 9.59e-18 | 73.2 |
| MsG0480021276.01.T01 | MTR_2g021050 | 63.077 | 65 | 20 | 3 | 18 | 79 | 189 | 252 | 3.62e-17 | 74.3 |
| MsG0480021276.01.T01 | MTR_2g425980 | 66.667 | 66 | 19 | 3 | 18 | 81 | 217 | 281 | 1.28e-16 | 72.8 |
| MsG0480021276.01.T01 | MTR_2g426060 | 60.000 | 65 | 22 | 3 | 18 | 79 | 218 | 281 | 2.74e-16 | 72.0 |
| MsG0480021276.01.T01 | MTR_2g031640 | 61.429 | 70 | 21 | 4 | 18 | 82 | 198 | 266 | 7.29e-16 | 70.9 |
| MsG0480021276.01.T01 | MTR_2g026010 | 59.722 | 72 | 19 | 4 | 18 | 81 | 197 | 266 | 3.16e-15 | 68.9 |
| MsG0480021276.01.T01 | MTR_2g031720 | 60.606 | 66 | 21 | 4 | 18 | 79 | 200 | 264 | 3.80e-15 | 68.6 |
| MsG0480021276.01.T01 | MTR_2g426020 | 62.295 | 61 | 16 | 3 | 18 | 77 | 218 | 272 | 4.00e-15 | 68.6 |
| MsG0480021276.01.T01 | MTR_1g068905 | 64.912 | 57 | 18 | 2 | 18 | 74 | 182 | 236 | 4.15e-15 | 68.2 |
| MsG0480021276.01.T01 | MTR_2g024110 | 52.113 | 71 | 28 | 3 | 7 | 77 | 189 | 253 | 7.36e-14 | 65.1 |
| MsG0480021276.01.T01 | MTR_3g083010 | 53.125 | 64 | 25 | 2 | 18 | 79 | 227 | 287 | 6.25e-13 | 62.4 |
| MsG0480021276.01.T01 | MTR_2g031700 | 66.000 | 50 | 10 | 2 | 6 | 55 | 191 | 233 | 1.23e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 19 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACATTTATACGATTT+GGG | 0.223285 | 4:-56195782 | MsG0480021276.01.T01:CDS |
| TCTTCAACATTTATACGATT+TGG | 0.233050 | 4:-56195783 | MsG0480021276.01.T01:CDS |
| TAACCCACCAAGTTTCTTCT+TGG | 0.278198 | 4:+56195725 | None:intergenic |
| CATTGAAAGTCTCAAGTGTT+AGG | 0.365530 | 4:+56195676 | None:intergenic |
| GAAATAGGTGAAGAAGTTAA+TGG | 0.373645 | 4:-56195636 | MsG0480021276.01.T01:CDS |
| GTTCCTCTTCCTGATGAAAT+AGG | 0.374911 | 4:-56195651 | MsG0480021276.01.T01:CDS |
| TTGTTGAGAATTCTATTCAC+TGG | 0.447743 | 4:-56195755 | MsG0480021276.01.T01:CDS |
| ACTTCTTCACCTATTTCATC+AGG | 0.451165 | 4:+56195642 | None:intergenic |
| TGAAGATCGTACGGCATAGC+AGG | 0.487119 | 4:+56195800 | None:intergenic |
| TCACCTATTTCATCAGGAAG+AGG | 0.521517 | 4:+56195648 | None:intergenic |
| TTCAACATTTATACGATTTG+GGG | 0.558130 | 4:-56195781 | MsG0480021276.01.T01:CDS |
| ATTATGACCAAGAAGAAACT+TGG | 0.569795 | 4:-56195732 | MsG0480021276.01.T01:CDS |
| TATAAATGTTGAAGATCGTA+CGG | 0.573781 | 4:+56195791 | None:intergenic |
| ATGACCAAGAAGAAACTTGG+TGG | 0.584801 | 4:-56195729 | MsG0480021276.01.T01:CDS |
| AACACTTGAGACTTTCAATG+AGG | 0.585762 | 4:-56195673 | MsG0480021276.01.T01:CDS |
| TTAAACGCGACAATTAAAGA+AGG | 0.597351 | 4:+56195699 | None:intergenic |
| TGACCAAGAAGAAACTTGGT+GGG | 0.626228 | 4:-56195728 | MsG0480021276.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTTCAACATTTATACGATTT+GGG | - | Chr4:56195618-56195637 | MsG0480021276.01.T01:CDS | 25.0% |
| ! | TATAAATGTTGAAGATCGTA+CGG | + | Chr4:56195612-56195631 | None:intergenic | 25.0% |
| ! | TCTTCAACATTTATACGATT+TGG | - | Chr4:56195617-56195636 | MsG0480021276.01.T01:CDS | 25.0% |
| ! | TTCAACATTTATACGATTTG+GGG | - | Chr4:56195619-56195638 | MsG0480021276.01.T01:CDS | 25.0% |
| ATTATGACCAAGAAGAAACT+TGG | - | Chr4:56195668-56195687 | MsG0480021276.01.T01:CDS | 30.0% | |
| GAAATAGGTGAAGAAGTTAA+TGG | - | Chr4:56195764-56195783 | MsG0480021276.01.T01:CDS | 30.0% | |
| TTAAACGCGACAATTAAAGA+AGG | + | Chr4:56195704-56195723 | None:intergenic | 30.0% | |
| TTGTTGAGAATTCTATTCAC+TGG | - | Chr4:56195645-56195664 | MsG0480021276.01.T01:CDS | 30.0% | |
| AACACTTGAGACTTTCAATG+AGG | - | Chr4:56195727-56195746 | MsG0480021276.01.T01:CDS | 35.0% | |
| ACTTCTTCACCTATTTCATC+AGG | + | Chr4:56195761-56195780 | None:intergenic | 35.0% | |
| CATTGAAAGTCTCAAGTGTT+AGG | + | Chr4:56195727-56195746 | None:intergenic | 35.0% | |
| ATGACCAAGAAGAAACTTGG+TGG | - | Chr4:56195671-56195690 | MsG0480021276.01.T01:CDS | 40.0% | |
| GTTCCTCTTCCTGATGAAAT+AGG | - | Chr4:56195749-56195768 | MsG0480021276.01.T01:CDS | 40.0% | |
| TAACCCACCAAGTTTCTTCT+TGG | + | Chr4:56195678-56195697 | None:intergenic | 40.0% | |
| TCACCTATTTCATCAGGAAG+AGG | + | Chr4:56195755-56195774 | None:intergenic | 40.0% | |
| TGACCAAGAAGAAACTTGGT+GGG | - | Chr4:56195672-56195691 | MsG0480021276.01.T01:CDS | 40.0% | |
| !!! | AGTTCGTGTTGCTGTTTTAG+AGG | - | Chr4:56195799-56195818 | MsG0480021276.01.T01:CDS | 40.0% |
| !!! | GTTCGTGTTGCTGTTTTAGA+GGG | - | Chr4:56195800-56195819 | MsG0480021276.01.T01:CDS | 40.0% |
| TGAAGATCGTACGGCATAGC+AGG | + | Chr4:56195603-56195622 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 56195587 | 56195835 | 56195587 | ID=MsG0480021276.01;Name=MsG0480021276.01 |
| Chr4 | mRNA | 56195587 | 56195835 | 56195587 | ID=MsG0480021276.01.T01;Parent=MsG0480021276.01;Name=MsG0480021276.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|82 |
| Chr4 | exon | 56195587 | 56195835 | 56195587 | ID=MsG0480021276.01.T01:exon:6871;Parent=MsG0480021276.01.T01 |
| Chr4 | CDS | 56195587 | 56195835 | 56195587 | ID=MsG0480021276.01.T01:cds;Parent=MsG0480021276.01.T01 |
| Gene Sequence |
| Protein sequence |
