AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016688.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016688.01.T01 MTR_3g093330 58.747 383 44 10 1 269 1 383 1.39e-126 367
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 294 362 8.42e-16 77.4
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 294 362 8.42e-16 77.4
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 294 362 8.42e-16 77.4
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 330 398 1.09e-15 77.4
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 340 408 1.18e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 334 402 1.20e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 336 404 1.21e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 336 404 1.21e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 336 404 1.21e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 332 400 1.26e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 337 405 1.29e-15 77.0
MsG0380016688.01.T01 AT5G24630 49.474 95 20 3 165 257 318 386 1.32e-15 77.0

Find 63 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTACCCTTGTTCTTAT+TGG 0.135839 3:+86590547 None:intergenic
ATTATACATGTTTCTCGAAA+TGG 0.301628 3:-86589721 MsG0380016688.01.T01:CDS
TTATTGGCCTTAAGATTCTT+AGG 0.303993 3:+86590563 None:intergenic
GTAAGTTTCCTAGTTGCTTT+TGG 0.318248 3:-86587877 MsG0380016688.01.T01:CDS
AGATTGGTTGCGTTCTTATC+AGG 0.332376 3:-86590832 MsG0380016688.01.T01:intron
CATCTGGATTACTACTTATC+AGG 0.347217 3:-86588356 MsG0380016688.01.T01:intron
TGTTTATGAAGCTGAAACTA+TGG 0.348887 3:-86588176 MsG0380016688.01.T01:CDS
TTTATGCTCTGCTTCCTTGT+CGG 0.385678 3:+86590248 None:intergenic
ATTTCGAGAAACATGTATAA+TGG 0.388168 3:+86589723 None:intergenic
GTGTACAGTTTCTTTCTTGT+GGG 0.388627 3:+86590464 None:intergenic
TTAAGATTCTTAGGTGACTT+AGG 0.394502 3:+86590572 None:intergenic
ATTCTTACATTAGGTACAAC+AGG 0.403661 3:+86589646 None:intergenic
TTATACATGTTTCTCGAAAT+GGG 0.413419 3:-86589720 MsG0380016688.01.T01:CDS
TAAATATGTCCGAATACATC+TGG 0.416211 3:-86588372 MsG0380016688.01.T01:CDS
AGTAGTAATCCAGATGTATT+CGG 0.438791 3:+86588363 None:intergenic
CAGCTCCCACATTGAATGAA+TGG 0.455114 3:+86590061 None:intergenic
ACCTTTATGACGGAGGGAAA+AGG 0.461841 3:+86591126 None:intergenic
TGATAAGAACGCAACCAATC+TGG 0.466147 3:+86590834 None:intergenic
CGTGTACAGTTTCTTTCTTG+TGG 0.470835 3:+86590463 None:intergenic
CTGGAGATAGTTCGCCAGAT+TGG 0.481862 3:-86590848 MsG0380016688.01.T01:CDS
TAAGTCACCTAAGAATCTTA+AGG 0.484727 3:-86590570 MsG0380016688.01.T01:CDS
GAAGCTGAAACTATGGTTGA+AGG 0.487381 3:-86588169 MsG0380016688.01.T01:intron
GTACTATGATGCAGGAAAGA+AGG 0.488549 3:-86590301 MsG0380016688.01.T01:intron
GTATTGATGATTGAAATTGC+TGG 0.491119 3:-86587841 MsG0380016688.01.T01:CDS
AAACTGAAGATCTATTGATC+AGG 0.498243 3:-86590001 MsG0380016688.01.T01:intron
ATGTGAAAAGGGACATTGGA+TGG 0.498992 3:-86588021 MsG0380016688.01.T01:intron
CGAAATGGGACAGGTGGTGA+TGG 0.508948 3:-86589706 MsG0380016688.01.T01:CDS
GAGAAACATGTATAATGGTA+AGG 0.512393 3:+86589728 None:intergenic
ACCATCCTCGTCAGAATCAA+AGG 0.520132 3:+86587993 None:intergenic
ATTCTGACGAGGATGGTAAG+AGG 0.524858 3:-86587987 MsG0380016688.01.T01:CDS
AGACACCTGGTAAATCCAAA+AGG 0.527784 3:-86587918 MsG0380016688.01.T01:CDS
TTTCATGTGAAAAGGGACAT+TGG 0.535477 3:-86588025 MsG0380016688.01.T01:intron
TACAGTTTCTTTCTTGTGGG+TGG 0.543570 3:+86590467 None:intergenic
CATGTTTCTCGAAATGGGAC+AGG 0.544490 3:-86589715 MsG0380016688.01.T01:CDS
TCCTTTGATTCTGACGAGGA+TGG 0.545387 3:-86587994 MsG0380016688.01.T01:CDS
CTAATTACCTTTATGACGGA+GGG 0.548331 3:+86591120 None:intergenic
AGATCTAATTACCTTTATGA+CGG 0.566384 3:+86591116 None:intergenic
GGTAAATGAAGATGAGAAAG+CGG 0.573759 3:+86590887 None:intergenic
AATCTAAACCAAAAGCAACT+AGG 0.586587 3:+86587869 None:intergenic
CTGTATGAAGTCGTTCATGA+TGG 0.587502 3:+86588216 None:intergenic
CACGCTGAGGAACAGACACC+TGG 0.588572 3:-86587931 MsG0380016688.01.T01:CDS
TCTAATTACCTTTATGACGG+AGG 0.590426 3:+86591119 None:intergenic
GCTATGATCACGACATGACT+CGG 0.590906 3:+86590028 None:intergenic
TCTTAAGGCCAATAAGAACA+AGG 0.596455 3:-86590555 MsG0380016688.01.T01:CDS
ACCTGGTAAATCCAAAAGGA+AGG 0.601971 3:-86587914 MsG0380016688.01.T01:CDS
CTTGGGGCAGACAGAGGCAA+AGG 0.608904 3:-86588438 MsG0380016688.01.T01:CDS
TCAGCTTCATAAACATCAGA+CGG 0.609363 3:+86588184 None:intergenic
AAAGAAACTGTACACGCGGA+AGG 0.621325 3:-86590456 MsG0380016688.01.T01:CDS
AGGAATCCATTCATTCAATG+TGG 0.621403 3:-86590067 MsG0380016688.01.T01:CDS
GGTTAGCTTGGGGCAGACAG+AGG 0.622579 3:-86588444 MsG0380016688.01.T01:CDS
GGAATCCATTCATTCAATGT+GGG 0.629446 3:-86590066 MsG0380016688.01.T01:CDS
TTTATGACGGAGGGAAAAGG+CGG 0.633259 3:+86591129 None:intergenic
CAAGAAAGAAACTGTACACG+CGG 0.635708 3:-86590460 MsG0380016688.01.T01:CDS
CTATGATGCAGGAAAGAAGG+AGG 0.639245 3:-86590298 MsG0380016688.01.T01:intron
GTTTCTCGAAATGGGACAGG+TGG 0.648129 3:-86589712 MsG0380016688.01.T01:CDS
CTTAAGGCCAATAAGAACAA+GGG 0.659601 3:-86590554 MsG0380016688.01.T01:CDS
TTATGACGGAGGGAAAAGGC+GGG 0.671583 3:+86591130 None:intergenic
AAGGAAGGCGGACAAAACAT+CGG 0.672092 3:-86587899 MsG0380016688.01.T01:CDS
TGATCAAAACGAGCACGCTG+AGG 0.690459 3:-86587944 MsG0380016688.01.T01:CDS
GCTTCATAAACATCAGACGG+TGG 0.691289 3:+86588187 None:intergenic
TGGTAAATCCAAAAGGAAGG+CGG 0.692323 3:-86587911 MsG0380016688.01.T01:CDS
GCTCGATTCAGACACCGACA+AGG 0.693845 3:-86590262 MsG0380016688.01.T01:CDS
AAGTAAAATCTAGATAACAA+CGG 0.708996 3:+86588414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGTAAATTAAATAAATG+AGG + Chr3:86590673-86590692 None:intergenic 10.0%
!!! TTTTAACTTTTAAGAAAAAA+AGG - Chr3:86589192-86589211 MsG0380016688.01.T01:intron 10.0%
!! AAGTTACAGTTAAATATTAA+TGG + Chr3:86590739-86590758 None:intergenic 15.0%
!! TTTAGATGAAATAGTATTTA+TGG - Chr3:86588599-86588618 MsG0380016688.01.T01:intron 15.0%
!!! ATATTATTTTACCGAAAAAA+AGG - Chr3:86590901-86590920 MsG0380016688.01.T01:intron 15.0%
!!! TCATATTTTTTCCTTTTTTT+CGG + Chr3:86590915-86590934 None:intergenic 15.0%
!! AAAGCAATATTTAAAAGGTA+TGG + Chr3:86590496-86590515 None:intergenic 20.0%
!! AAGAAAATTACGACTTATAA+TGG + Chr3:86590271-86590290 None:intergenic 20.0%
!! AAGTAAAATCTAGATAACAA+CGG + Chr3:86590579-86590598 None:intergenic 20.0%
!! ACATTAGAACAAATATAACT+TGG + Chr3:86590246-86590265 None:intergenic 20.0%
!! GTATGAAAGCAATATTTAAA+AGG + Chr3:86590501-86590520 None:intergenic 20.0%
!!! ATCTTACCTGTTTTAAAAAA+GGG - Chr3:86590152-86590171 MsG0380016688.01.T01:intron 20.0%
!!! ATTTCCTTTTTTCATGAAAA+AGG - Chr3:86589803-86589822 MsG0380016688.01.T01:intron 20.0%
!!! CAAATCTTTATTTTCTTTTC+AGG - Chr3:86590334-86590353 MsG0380016688.01.T01:intron 20.0%
!!! CTATTATTTTCATGTGAAAA+GGG - Chr3:86590958-86590977 MsG0380016688.01.T01:intron 20.0%
!!! GCTTATAATTTTGTTTTGAA+TGG - Chr3:86589718-86589737 MsG0380016688.01.T01:CDS 20.0%
!!! GCTTGATATTTGATTTTATT+TGG - Chr3:86588570-86588589 MsG0380016688.01.T01:intron 20.0%
!!! TATCTTACCTGTTTTAAAAA+AGG - Chr3:86590151-86590170 MsG0380016688.01.T01:intron 20.0%
!!! TCTATTATTTTCATGTGAAA+AGG - Chr3:86590957-86590976 MsG0380016688.01.T01:intron 20.0%
!!! TTTTTCATGAAAAAAGGAAA+TGG + Chr3:86589804-86589823 None:intergenic 20.0%
! AAAACAAAGGTTAATGCAAA+GGG - Chr3:86589148-86589167 MsG0380016688.01.T01:intron 25.0%
! AAAATAGCTAAGCTGTATTA+TGG + Chr3:86590085-86590104 None:intergenic 25.0%
! AAAGATTTGAACAATCAGTT+AGG + Chr3:86590323-86590342 None:intergenic 25.0%
! AACAATGTCATTCTTACATT+AGG + Chr3:86589356-86589375 None:intergenic 25.0%
! AAGAATCAAAATGTCAAAAG+AGG + Chr3:86590221-86590240 None:intergenic 25.0%
! AGATCTAATTACCTTTATGA+CGG + Chr3:86587877-86587896 None:intergenic 25.0%
! ATAATCACAATACAAATAGC+AGG + Chr3:86588879-86588898 None:intergenic 25.0%
! ATTATACATGTTTCTCGAAA+TGG - Chr3:86589269-86589288 MsG0380016688.01.T01:intron 25.0%
! ATTTCGAGAAACATGTATAA+TGG + Chr3:86589270-86589289 None:intergenic 25.0%
! GTAAAAATAACACTCTCAAA+TGG + Chr3:86588655-86588674 None:intergenic 25.0%
! TAAAATCCTCAGTTAATTGT+TGG + Chr3:86590860-86590879 None:intergenic 25.0%
! TTATACATGTTTCTCGAAAT+GGG - Chr3:86589270-86589289 MsG0380016688.01.T01:intron 25.0%
! TTCGAAAACATATAAATTCG+TGG - Chr3:86589676-86589695 MsG0380016688.01.T01:CDS 25.0%
!! ATAATATTTAAAGCAGCACT+AGG + Chr3:86590888-86590907 None:intergenic 25.0%
!! ATCAATAGATCTTCAGTTTT+TGG + Chr3:86588988-86589007 None:intergenic 25.0%
!! CCATGCTGTAAAATATTTTT+AGG + Chr3:86589389-86589408 None:intergenic 25.0%
!! CCTAAAAATATTTTACAGCA+TGG - Chr3:86589386-86589405 MsG0380016688.01.T01:intron 25.0%
!! TCAATAGATCTTCAGTTTTT+GGG + Chr3:86588987-86589006 None:intergenic 25.0%
!! TTTCTTCTTCTTTTTCTTTC+AGG - Chr3:86590525-86590544 MsG0380016688.01.T01:CDS 25.0%
!!! ATGTTTGGTTTTATAGTGTA+TGG - Chr3:86589602-86589621 MsG0380016688.01.T01:intron 25.0%
!!! GTTTCCTTTTTCATGAAAAA+AGG + Chr3:86589810-86589829 None:intergenic 25.0%
!!! TATACCAAATGTTTTTGCAT+AGG - Chr3:86588903-86588922 MsG0380016688.01.T01:intron 25.0%
!!! TGTAACTTATTTTCAGATAG+AGG - Chr3:86590751-86590770 MsG0380016688.01.T01:intron 25.0%
!!! TGTTTGGTTTTATAGTGTAT+GGG - Chr3:86589603-86589622 MsG0380016688.01.T01:intron 25.0%
AAAACATCTATAGTTCCTAG+CGG - Chr3:86590367-86590386 MsG0380016688.01.T01:intron 30.0%
AAAACCAAACATGTAGCAAA+GGG + Chr3:86589594-86589613 None:intergenic 30.0%
AAACAAAGGTTAATGCAAAG+GGG - Chr3:86589149-86589168 MsG0380016688.01.T01:intron 30.0%
AAACTGAAGATCTATTGATC+AGG - Chr3:86588989-86589008 MsG0380016688.01.T01:intron 30.0%
AAGGTATGGTATCTTAATCA+TGG + Chr3:86590482-86590501 None:intergenic 30.0%
AATCTAAACCAAAAGCAACT+AGG + Chr3:86591124-86591143 None:intergenic 30.0%
AGTAAAAGGGAAGAAAACAA+AGG - Chr3:86589135-86589154 MsG0380016688.01.T01:intron 30.0%
AGTAGTAATCCAGATGTATT+CGG + Chr3:86590630-86590649 None:intergenic 30.0%
ATTCTTACATTAGGTACAAC+AGG + Chr3:86589347-86589366 None:intergenic 30.0%
ATTGTGTCAAAAATATGGGT+TGG - Chr3:86588848-86588867 MsG0380016688.01.T01:intron 30.0%
CATGCATATGGATATGAAAT+AGG - Chr3:86589234-86589253 MsG0380016688.01.T01:intron 30.0%
CTAACATTTAAAGATGCGAT+GGG + Chr3:86588774-86588793 None:intergenic 30.0%
GAAAACAAAGGTTAATGCAA+AGG - Chr3:86589147-86589166 MsG0380016688.01.T01:intron 30.0%
GAAATGTGCTTAGATTTGAA+AGG - Chr3:86589958-86589977 MsG0380016688.01.T01:intron 30.0%
GAACGAAAAACAAGTGTATA+AGG + Chr3:86588068-86588087 None:intergenic 30.0%
GAGAAACATGTATAATGGTA+AGG + Chr3:86589265-86589284 None:intergenic 30.0%
GATTCCTATGCAAAAACATT+TGG + Chr3:86588910-86588929 None:intergenic 30.0%
GTAATCTGCATTTATCATCA+CGG - Chr3:86590418-86590437 MsG0380016688.01.T01:intron 30.0%
TAAAACCAAACATGTAGCAA+AGG + Chr3:86589595-86589614 None:intergenic 30.0%
TAAATATGTCCGAATACATC+TGG - Chr3:86590618-86590637 MsG0380016688.01.T01:CDS 30.0%
TAAGTCACCTAAGAATCTTA+AGG - Chr3:86588420-86588439 MsG0380016688.01.T01:CDS 30.0%
TGTTTATGAAGCTGAAACTA+TGG - Chr3:86590814-86590833 MsG0380016688.01.T01:intron 30.0%
TTAAGATTCTTAGGTGACTT+AGG + Chr3:86588421-86588440 None:intergenic 30.0%
TTGTGCAATACTAACATCAT+TGG - Chr3:86588267-86588286 MsG0380016688.01.T01:intron 30.0%
TTGTTCATGTATCAAAGTGA+CGG + Chr3:86589412-86589431 None:intergenic 30.0%
! AAAGCATCAAAGCAATATTG+AGG + Chr3:86589518-86589537 None:intergenic 30.0%
! ATTTTACAAAATCCTGGTCA+AGG + Chr3:86590710-86590729 None:intergenic 30.0%
! GACCAGGATTTTGTAAAATA+CGG - Chr3:86590711-86590730 MsG0380016688.01.T01:intron 30.0%
! GTATTGATGATTGAAATTGC+TGG - Chr3:86591149-86591168 MsG0380016688.01.T01:five_prime_UTR 30.0%
! GTTAAGTTTCTAGAAATAGC+TGG - Chr3:86590128-86590147 MsG0380016688.01.T01:intron 30.0%
!! ACACTACTTTTGTCTAATAG+TGG - Chr3:86590294-86590313 MsG0380016688.01.T01:intron 30.0%
!! TTATTGGCCTTAAGATTCTT+AGG + Chr3:86588430-86588449 None:intergenic 30.0%
!! TTTGTTTTCTTCCCTTTTAC+TGG + Chr3:86589136-86589155 None:intergenic 30.0%
!!! GAGATTCCCTTTTTTAAAAC+AGG + Chr3:86590161-86590180 None:intergenic 30.0%
!!! TCAGCTTTCAGATTTTAGTT+CGG - Chr3:86587946-86587965 MsG0380016688.01.T01:CDS 30.0%
!!! TTTTTCTTTCAGGTTAGCTT+GGG - Chr3:86590535-86590554 MsG0380016688.01.T01:CDS 30.0%
AATCCTCAGTTAATTGTTGG+TGG + Chr3:86590857-86590876 None:intergenic 35.0%
ACATTGTACATCAGTTCCTA+AGG - Chr3:86588239-86588258 MsG0380016688.01.T01:intron 35.0%
ACCTAAAAAATGAGCAGTTC+TGG - Chr3:86588123-86588142 MsG0380016688.01.T01:intron 35.0%
AGGAATCCATTCATTCAATG+TGG - Chr3:86588923-86588942 MsG0380016688.01.T01:intron 35.0%
AGGCCAAATAGAAACTTTCA+AGG + Chr3:86590444-86590463 None:intergenic 35.0%
ATAGATCTGAGTGGTGATAT+GGG - Chr3:86589889-86589908 MsG0380016688.01.T01:intron 35.0%
CAAATGATCGAACAGGTAAT+GGG + Chr3:86588028-86588047 None:intergenic 35.0%
CATATCCATATGCATGAAGA+TGG + Chr3:86589230-86589249 None:intergenic 35.0%
CATCTGGATTACTACTTATC+AGG - Chr3:86590634-86590653 MsG0380016688.01.T01:intron 35.0%
CATTGTACATCAGTTCCTAA+GGG - Chr3:86588240-86588259 MsG0380016688.01.T01:intron 35.0%
CCATCGCATCTTTAAATGTT+AGG - Chr3:86588772-86588791 MsG0380016688.01.T01:intron 35.0%
CCATGTTAAATACTACCACA+GGG - Chr3:86589626-86589645 MsG0380016688.01.T01:intron 35.0%
CCTAACATTTAAAGATGCGA+TGG + Chr3:86588775-86588794 None:intergenic 35.0%
CGAAAAACAAGTGTATAAGG+AGG + Chr3:86588065-86588084 None:intergenic 35.0%
CTTAAGGCCAATAAGAACAA+GGG - Chr3:86588436-86588455 MsG0380016688.01.T01:CDS 35.0%
CTTTGCTTTCTATTTGTTCC+AGG - Chr3:86589487-86589506 MsG0380016688.01.T01:intron 35.0%
GAGGTAATCGCTAAAAATCA+AGG + Chr3:86590202-86590221 None:intergenic 35.0%
GCGCATTGTGTCAAAAATAT+GGG - Chr3:86588844-86588863 MsG0380016688.01.T01:intron 35.0%
GGAATCCATTCATTCAATGT+GGG - Chr3:86588924-86588943 MsG0380016688.01.T01:intron 35.0%
GGTAAATGAAGATGAGAAAG+CGG + Chr3:86588106-86588125 None:intergenic 35.0%
GTGTACAGTTTCTTTCTTGT+GGG + Chr3:86588529-86588548 None:intergenic 35.0%
TAGGTGGCATTTGTAGATTT+GGG - Chr3:86588791-86588810 MsG0380016688.01.T01:intron 35.0%
TCAGCTTCATAAACATCAGA+CGG + Chr3:86590809-86590828 None:intergenic 35.0%
TCGCATCTTTAAATGTTAGG+TGG - Chr3:86588775-86588794 MsG0380016688.01.T01:intron 35.0%
TCTAATTACCTTTATGACGG+AGG + Chr3:86587874-86587893 None:intergenic 35.0%
TCTTAAGGCCAATAAGAACA+AGG - Chr3:86588435-86588454 MsG0380016688.01.T01:CDS 35.0%
TGCAATACTAACATCATTGG+TGG - Chr3:86588270-86588289 MsG0380016688.01.T01:intron 35.0%
TGCGCATTGTGTCAAAAATA+TGG - Chr3:86588843-86588862 MsG0380016688.01.T01:intron 35.0%
TTAGGTGGCATTTGTAGATT+TGG - Chr3:86588790-86588809 MsG0380016688.01.T01:intron 35.0%
TTTCATGTGAAAAGGGACAT+TGG - Chr3:86590965-86590984 MsG0380016688.01.T01:intron 35.0%
! AGTGAAATGTGTTACTCATC+TGG + Chr3:86589656-86589675 None:intergenic 35.0%
! CACCGTATTTTACAAAATCC+TGG + Chr3:86590716-86590735 None:intergenic 35.0%
! CTAATTACCTTTATGACGGA+GGG + Chr3:86587873-86587892 None:intergenic 35.0%
! TTTTGCGTTGTATGTCATCT+TGG - Chr3:86590393-86590412 MsG0380016688.01.T01:intron 35.0%
! TTTTTCCTTTGATTCTGACG+AGG - Chr3:86590992-86591011 MsG0380016688.01.T01:intron 35.0%
!! GTAAGTTTCCTAGTTGCTTT+TGG - Chr3:86591113-86591132 MsG0380016688.01.T01:intron 35.0%
!! GTCAAAAATATGGGTTGGTT+TGG - Chr3:86588853-86588872 MsG0380016688.01.T01:intron 35.0%
!! GTCATTTTGTACTATGATGC+AGG - Chr3:86588681-86588700 MsG0380016688.01.T01:intron 35.0%
!! GTTACACATTTTGTGCTACT+AGG - Chr3:86588292-86588311 MsG0380016688.01.T01:intron 35.0%
!! GTTTTGAATGGAACGACAAA+TGG - Chr3:86589730-86589749 MsG0380016688.01.T01:CDS 35.0%
!!! CTTTTTCTTTCAGGTTAGCT+TGG - Chr3:86590534-86590553 MsG0380016688.01.T01:CDS 35.0%
!!! TCCAGAACTGCTCATTTTTT+AGG + Chr3:86588127-86588146 None:intergenic 35.0%
!!! TTTTCTTTCAGGTTAGCTTG+GGG - Chr3:86590536-86590555 MsG0380016688.01.T01:CDS 35.0%
AAGACTGCACACCAGTAAAA+GGG - Chr3:86589122-86589141 MsG0380016688.01.T01:intron 40.0%
AAGGTTAATGCAAAGGGGAA+AGG - Chr3:86589154-86589173 MsG0380016688.01.T01:intron 40.0%
ACCTGGTAAATCCAAAAGGA+AGG - Chr3:86591076-86591095 MsG0380016688.01.T01:intron 40.0%
AGACACCTGGTAAATCCAAA+AGG - Chr3:86591072-86591091 MsG0380016688.01.T01:intron 40.0%
AGCAATATTGAGGAGAAACC+TGG + Chr3:86589508-86589527 None:intergenic 40.0%
AGGTGGCATTTGTAGATTTG+GGG - Chr3:86588792-86588811 MsG0380016688.01.T01:intron 40.0%
AGTGAAGCAAATGATCGAAC+AGG + Chr3:86588035-86588054 None:intergenic 40.0%
ATGTGAAAAGGGACATTGGA+TGG - Chr3:86590969-86590988 MsG0380016688.01.T01:intron 40.0%
CAAAAAGGCTTCAAAAGCGA+AGG - Chr3:86589076-86589095 MsG0380016688.01.T01:intron 40.0%
CAAGAAAGAAACTGTACACG+CGG - Chr3:86588530-86588549 MsG0380016688.01.T01:intron 40.0%
CATAGATCTGAGTGGTGATA+TGG - Chr3:86589888-86589907 MsG0380016688.01.T01:intron 40.0%
CATCCACCAACAATTAACTG+AGG - Chr3:86590851-86590870 MsG0380016688.01.T01:CDS 40.0%
CATGGAAGTAACTAGCTACA+AGG + Chr3:86590464-86590483 None:intergenic 40.0%
CCCTGTGGTAGTATTTAACA+TGG + Chr3:86589629-86589648 None:intergenic 40.0%
CGGAAAATCTCCATCCAAAA+AGG - Chr3:86589061-86589080 MsG0380016688.01.T01:intron 40.0%
CGGCCTTGAAAGTTTCTATT+TGG - Chr3:86590438-86590457 MsG0380016688.01.T01:intron 40.0%
CGTGTACAGTTTCTTTCTTG+TGG + Chr3:86588530-86588549 None:intergenic 40.0%
CTGTATGAAGTCGTTCATGA+TGG + Chr3:86590777-86590796 None:intergenic 40.0%
GAAACTAAACCTCAACCTTC+TGG - Chr3:86589014-86589033 MsG0380016688.01.T01:intron 40.0%
GAAGCTGAAACTATGGTTGA+AGG - Chr3:86590821-86590840 MsG0380016688.01.T01:intron 40.0%
GATTCCCTTTGCTACATGTT+TGG - Chr3:86589587-86589606 MsG0380016688.01.T01:intron 40.0%
GCAAATGATCGAACAGGTAA+TGG + Chr3:86588029-86588048 None:intergenic 40.0%
GCCATGTTAAATACTACCAC+AGG - Chr3:86589625-86589644 MsG0380016688.01.T01:intron 40.0%
GCGACTATCGTGTAAATACT+CGG + Chr3:86588357-86588376 None:intergenic 40.0%
GTACTATGATGCAGGAAAGA+AGG - Chr3:86588689-86588708 MsG0380016688.01.T01:intron 40.0%
GTATACGCAGTGTTATCATC+AGG + Chr3:86590054-86590073 None:intergenic 40.0%
GTATTGCACAACTAACCCTT+AGG + Chr3:86588258-86588277 None:intergenic 40.0%
GTCTTCAACGAAAAAGACGT+TGG - Chr3:86588468-86588487 MsG0380016688.01.T01:intron 40.0%
TACACGCGGAAGGATAAAAA+TGG - Chr3:86588544-86588563 MsG0380016688.01.T01:intron 40.0%
TACAGTTTCTTTCTTGTGGG+TGG + Chr3:86588526-86588545 None:intergenic 40.0%
TCAACGAAAAAGACGTTGGA+AGG - Chr3:86588472-86588491 MsG0380016688.01.T01:intron 40.0%
TGAGAAAGTTCATCGCACAA+AGG - Chr3:86589539-86589558 MsG0380016688.01.T01:intron 40.0%
TGATAAGAACGCAACCAATC+TGG + Chr3:86588159-86588178 None:intergenic 40.0%
TGGAAGAAAAGTTGCTAGTC+TGG - Chr3:86589696-86589715 MsG0380016688.01.T01:CDS 40.0%
TGGTAAATCCAAAAGGAAGG+CGG - Chr3:86591079-86591098 MsG0380016688.01.T01:intron 40.0%
TTGCTCCATCTTCATGCATA+TGG - Chr3:86589222-86589241 MsG0380016688.01.T01:intron 40.0%
TTTATGCTCTGCTTCCTTGT+CGG + Chr3:86588745-86588764 None:intergenic 40.0%
! AAAAAGCTGCTCTGTTTTGC+AGG - Chr3:86589841-86589860 MsG0380016688.01.T01:intron 40.0%
! AGATTGGTTGCGTTCTTATC+AGG - Chr3:86588158-86588177 MsG0380016688.01.T01:intron 40.0%
! ATAGTCGCAGTTTTCTGATG+AGG - Chr3:86588369-86588388 MsG0380016688.01.T01:CDS 40.0%
! ATTTAGAATCCAGGCTGGAT+AGG + Chr3:86589464-86589483 None:intergenic 40.0%
! GCAAAACAGAGCAGCTTTTT+AGG + Chr3:86589841-86589860 None:intergenic 40.0%
! GCAAAGCACATTTAGAATCC+AGG + Chr3:86589473-86589492 None:intergenic 40.0%
!! CGTCTTTTTCGTTGAAGACT+TGG + Chr3:86588467-86588486 None:intergenic 40.0%
!!! ACAGAGCAGCTTTTTAGGAT+TGG + Chr3:86589836-86589855 None:intergenic 40.0%
!!! CTTCGCTTTTGAAGCCTTTT+TGG + Chr3:86589078-86589097 None:intergenic 40.0%
!!! GCTTTTGAAGCCTTTTTGGA+TGG + Chr3:86589074-86589093 None:intergenic 40.0%
AAAGAAACTGTACACGCGGA+AGG - Chr3:86588534-86588553 MsG0380016688.01.T01:intron 45.0%
AAGGAAGGCGGACAAAACAT+CGG - Chr3:86591091-86591110 MsG0380016688.01.T01:intron 45.0%
AAGTTCATCGCACAAAGGTC+AGG - Chr3:86589544-86589563 MsG0380016688.01.T01:intron 45.0%
ACCATCCTCGTCAGAATCAA+AGG + Chr3:86591000-86591019 None:intergenic 45.0%
AGGTGACTCATAGATCTGAG+TGG - Chr3:86589880-86589899 MsG0380016688.01.T01:intron 45.0%
ATTATCTCAGATTCCCCGTC+CGG - Chr3:86589928-86589947 MsG0380016688.01.T01:intron 45.0%
ATTCTGACGAGGATGGTAAG+AGG - Chr3:86591003-86591022 MsG0380016688.01.T01:intron 45.0%
CAGCTCCCACATTGAATGAA+TGG + Chr3:86588932-86588951 None:intergenic 45.0%
CATGTTTCTCGAAATGGGAC+AGG - Chr3:86589275-86589294 MsG0380016688.01.T01:intron 45.0%
CTATGATGCAGGAAAGAAGG+AGG - Chr3:86588692-86588711 MsG0380016688.01.T01:intron 45.0%
GAAGACTGCACACCAGTAAA+AGG - Chr3:86589121-86589140 MsG0380016688.01.T01:intron 45.0%
GAATCAGATGACAGTGTCAC+CGG + Chr3:86588335-86588354 None:intergenic 45.0%
GCTATGATCACGACATGACT+CGG + Chr3:86588965-86588984 None:intergenic 45.0%
GCTTCATAAACATCAGACGG+TGG + Chr3:86590806-86590825 None:intergenic 45.0%
GGCACTACCCTTGTTCTTAT+TGG + Chr3:86588446-86588465 None:intergenic 45.0%
TAAGCACATTTCCTGATCCC+CGG + Chr3:86589950-86589969 None:intergenic 45.0%
TCCTTTGATTCTGACGAGGA+TGG - Chr3:86590996-86591015 MsG0380016688.01.T01:intron 45.0%
! ACCTTTATGACGGAGGGAAA+AGG + Chr3:86587867-86587886 None:intergenic 45.0%
! AGCACATTTAGAATCCAGGC+TGG + Chr3:86589469-86589488 None:intergenic 45.0%
! CAAAGGGGAAAGGTACGAAA+TGG - Chr3:86589164-86589183 MsG0380016688.01.T01:intron 45.0%
! GCCTTCCTTTTGGATTTACC+AGG + Chr3:86591080-86591099 None:intergenic 45.0%
! TGTTTTGTCCGCCTTCCTTT+TGG + Chr3:86591090-86591109 None:intergenic 45.0%
! TTTATGACGGAGGGAAAAGG+CGG + Chr3:86587864-86587883 None:intergenic 45.0%
!! CGTGCTCGTTTTGATCAGTT+GGG + Chr3:86591043-86591062 None:intergenic 45.0%
!! CTCGTTTTGATCAGTTGGGT+GGG + Chr3:86591039-86591058 None:intergenic 45.0%
AGTGGTGATATGGGAGCTGT+AGG - Chr3:86589898-86589917 MsG0380016688.01.T01:intron 50.0%
CAGGCTCTTGTTGAGTGTCA+AGG - Chr3:86589860-86589879 MsG0380016688.01.T01:intron 50.0%
CCATCTTCACCAGAAGGTTG+AGG + Chr3:86589026-86589045 None:intergenic 50.0%
CCTCAACCTTCTGGTGAAGA+TGG - Chr3:86589023-86589042 MsG0380016688.01.T01:intron 50.0%
CGAAGTCCATCTTCACCAGA+AGG + Chr3:86589032-86589051 None:intergenic 50.0%
CTGGAGATAGTTCGCCAGAT+TGG - Chr3:86588142-86588161 MsG0380016688.01.T01:intron 50.0%
GGCTGGATAGGCAGTCAATA+TGG + Chr3:86589452-86589471 None:intergenic 50.0%
GTGGTGATATGGGAGCTGTA+GGG - Chr3:86589899-86589918 MsG0380016688.01.T01:intron 50.0%
GTTTCTCGAAATGGGACAGG+TGG - Chr3:86589278-86589297 MsG0380016688.01.T01:intron 50.0%
TACAACGCAAAACGTCCGCT+AGG + Chr3:86590385-86590404 None:intergenic 50.0%
TACTCATCTGGTTGTCCCTG+TGG + Chr3:86589644-86589663 None:intergenic 50.0%
TGATATGGGAGCTGTAGGGA+GGG - Chr3:86589903-86589922 MsG0380016688.01.T01:intron 50.0%
TGATCAAAACGAGCACGCTG+AGG - Chr3:86591046-86591065 MsG0380016688.01.T01:intron 50.0%
TTATCTCAGATTCCCCGTCC+GGG - Chr3:86589929-86589948 MsG0380016688.01.T01:intron 50.0%
TTCATCGCACAAAGGTCAGG+TGG - Chr3:86589547-86589566 MsG0380016688.01.T01:intron 50.0%
! GATGGACTTCGTGGCAATGA+CGG - Chr3:86589041-86589060 MsG0380016688.01.T01:intron 50.0%
! GCCTTTTCCCTCCGTCATAA+AGG - Chr3:86587863-86587882 MsG0380016688.01.T01:CDS 50.0%
! GTGATTAGTCAGCCTTGACC+AGG - Chr3:86590695-86590714 MsG0380016688.01.T01:intron 50.0%
! TATTGACTGCCTATCCAGCC+TGG - Chr3:86589452-86589471 MsG0380016688.01.T01:intron 50.0%
! TCTGGTGAAGATGGACTTCG+TGG - Chr3:86589032-86589051 MsG0380016688.01.T01:intron 50.0%
! TTATGACGGAGGGAAAAGGC+GGG + Chr3:86587863-86587882 None:intergenic 50.0%
!! GCGTGCTCGTTTTGATCAGT+TGG + Chr3:86591044-86591063 None:intergenic 50.0%
!! GCTCGTTTTGATCAGTTGGG+TGG + Chr3:86591040-86591059 None:intergenic 50.0%
!! GTTTTGATCAGTTGGGTGGG+CGG + Chr3:86591036-86591055 None:intergenic 50.0%
ACATTTCCTGATCCCCGGAC+GGG + Chr3:86589945-86589964 None:intergenic 55.0%
CACATTTCCTGATCCCCGGA+CGG + Chr3:86589946-86589965 None:intergenic 55.0%
CGAAATGGGACAGGTGGTGA+TGG - Chr3:86589284-86589303 MsG0380016688.01.T01:intron 55.0%
GACAGTGTCACCGGCGAATT+AGG + Chr3:86588326-86588345 None:intergenic 55.0%
GCTCGATTCAGACACCGACA+AGG - Chr3:86588728-86588747 MsG0380016688.01.T01:intron 55.0%
GTCACCGGCGAATTAGGAGT+GGG + Chr3:86588320-86588339 None:intergenic 55.0%
GTGATATGGGAGCTGTAGGG+AGG - Chr3:86589902-86589921 MsG0380016688.01.T01:intron 55.0%
TATCTCAGATTCCCCGTCCG+GGG - Chr3:86589930-86589949 MsG0380016688.01.T01:intron 55.0%
TGTCACCGGCGAATTAGGAG+TGG + Chr3:86588321-86588340 None:intergenic 55.0%
CACGCTGAGGAACAGACACC+TGG - Chr3:86591059-86591078 MsG0380016688.01.T01:intron 60.0%
CATTTCCTGATCCCCGGACG+GGG + Chr3:86589944-86589963 None:intergenic 60.0%
CTTGGGGCAGACAGAGGCAA+AGG - Chr3:86590552-86590571 MsG0380016688.01.T01:CDS 60.0%
GGTGCCCACTCCTAATTCGC+CGG - Chr3:86588313-86588332 MsG0380016688.01.T01:intron 60.0%
!! GGTTAGCTTGGGGCAGACAG+AGG - Chr3:86590546-86590565 MsG0380016688.01.T01:CDS 60.0%
AGATTCCCCGTCCGGGGATC+AGG - Chr3:86589936-86589955 MsG0380016688.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86587834 86591178 86587834 ID=MsG0380016688.01;Name=MsG0380016688.01
Chr3 mRNA 86587834 86591178 86587834 ID=MsG0380016688.01.T01;Parent=MsG0380016688.01;Name=MsG0380016688.01.T01;_AED=0.31;_eAED=0.42;_QI=89|0.5|0.33|1|0.87|0.77|9|0|290
Chr3 exon 86587834 86588033 86587834 ID=MsG0380016688.01.T01:exon:21912;Parent=MsG0380016688.01.T01
Chr3 exon 86588170 86588241 86588170 ID=MsG0380016688.01.T01:exon:21911;Parent=MsG0380016688.01.T01
Chr3 exon 86588357 86588465 86588357 ID=MsG0380016688.01.T01:exon:21910;Parent=MsG0380016688.01.T01
Chr3 exon 86589654 86589756 86589654 ID=MsG0380016688.01.T01:exon:21909;Parent=MsG0380016688.01.T01
Chr3 exon 86590002 86590087 86590002 ID=MsG0380016688.01.T01:exon:21908;Parent=MsG0380016688.01.T01
Chr3 exon 86590248 86590309 86590248 ID=MsG0380016688.01.T01:exon:21907;Parent=MsG0380016688.01.T01
Chr3 exon 86590447 86590639 86590447 ID=MsG0380016688.01.T01:exon:21906;Parent=MsG0380016688.01.T01
Chr3 exon 86590833 86590918 86590833 ID=MsG0380016688.01.T01:exon:21905;Parent=MsG0380016688.01.T01
Chr3 exon 86591128 86591178 86591128 ID=MsG0380016688.01.T01:exon:21904;Parent=MsG0380016688.01.T01
Chr3 five_prime_UTR 86591128 86591178 86591128 ID=MsG0380016688.01.T01:five_prime_utr;Parent=MsG0380016688.01.T01
Chr3 five_prime_UTR 86590881 86590918 86590881 ID=MsG0380016688.01.T01:five_prime_utr;Parent=MsG0380016688.01.T01
Chr3 CDS 86590833 86590880 86590833 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86590447 86590639 86590447 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86590248 86590309 86590248 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86590002 86590087 86590002 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86589654 86589756 86589654 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86588357 86588465 86588357 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86588170 86588241 86588170 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Chr3 CDS 86587834 86588033 86587834 ID=MsG0380016688.01.T01:cds;Parent=MsG0380016688.01.T01
Gene Sequence

>MsG0380016688.01.T01

ATGAGCAGTTCTGGAGATAGTTCGCCAGATTGGTTGCGTTCTTATCAGTCGCAGTTTTCTGATGAGGATATAATTGACGATGAAGATTCATCTCCTAAGTCACCTAAGAATCTTAAGGCCAATAAGAACAAGGGTAGTGCCAAGTCTTCAACGAAAAAGACGTTGGAAGGAAAAAGTCTCAAGATAGAAGATGAAGCACCACCCACAAGAAAGAAACTGTACACGCGGAAGGATAAAAATGGAAAGAAGGAGGAAAAGAAGATCAAGCTCGATTCAGACACCGACAAGGAAGCAGAGCATAAAGAATCCATTCATTCAATGTGGGAGCTGTCATCAGATTCCGAGTCATGTCGTGATCATAGCCCAAAAACTGAAGATCTATTGATCAGGCATTTCCTTACCATTATACATGTTTCTCGAAATGGGACAGGTGGTGATGGAGATGTAGAAGTTAAAGATGAAGAAACTTTTGAAAAGCCTGTTGTACCTAATGTTAGCTTGGGGCAGACAGAGGCAAAGGTCCGTTGTTATCTAGATTTTACTTATGTGCTCACTTTACGTTGTAAATATGTCCGAATACATCTGGATTACTACTTATCAGAGGCCATCATGAACGACTTCATACAGCTGAATCCACCGTCTGATGTTTATGAAGCTGAAACTATGGTTGAAGGGACATTGGATGGTTTTTCCTTTGATTCTGACGAGGATGGTAAGAGGCAGAAAACCGCCCACCCAACTGATCAAAACGAGCACGCTGAGGAACAGACACCTGGTAAATCCAAAAGGAAGGCGGACAAAACATCGGTAAGTTTCCTAGTTGCTTTTGGTTTAGATTTGTCTGTATTGATGATTGAAATTGCTGGTGCATAA
Protein sequence

>MsG0380016688.01.T01

MSSSGDSSPDWLRSYQSQFSDEDIIDDEDSSPKSPKNLKANKNKGSAKSSTKKTLEGKSLKIEDEAPPTRKKLYTRKDKNGKKEEKKIKLDSDTDKEAEHKESIHSMWELSSDSESCRDHSPKTEDLLIRHFLTIIHVSRNGTGGDGDVEVKDEETFEKPVVPNVSLGQTEAKVRCYLDFTYVLTLRCKYVRIHLDYYLSEAIMNDFIQLNPPSDVYEAETMVEGTLDGFSFDSDEDGKRQKTAHPTDQNEHAEEQTPGKSKRKADKTSVSFLVAFGLDLSVLMIEIAGA*