AlfalfaGEDB | MsG0580024032.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024032.01

KEGG: -
GO: -
PFAM: PF14308

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024032.01.T01	KEH27298.1	96.947	131	4	0	50	180	12	142	4.92E-86	261

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024032.01.T01	Q8GYX8	62.791	129	45	2	46	174	230	355	1.12E-41	147

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024032.01.T01	A0A072UDX0	96.947	131	4	0	50	180	12	142	2.35e-86	261
MsG0580024032.01.T01	A0A396HMW6	96.947	131	4	0	50	180	235	365	8.74e-84	262

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048952.01	MsG0580024032.01	0.834830	2.389021e-56	2.868567e-53
MsG0180000585.01	MsG0580024032.01	0.800769	1.233755e-48	5.792913e-46
MsG0180002894.01	MsG0580024032.01	0.821767	3.389661e-53	2.783316e-50
MsG0180003669.01	MsG0580024032.01	0.800460	1.426272e-48	6.644674e-46
MsG0180003690.01	MsG0580024032.01	0.828860	7.108439e-55	7.151914e-52
MsG0180003948.01	MsG0580024032.01	0.807447	5.033255e-50	2.804093e-47
MsG0180004005.01	MsG0580024032.01	0.812138	4.929166e-51	3.108809e-48
MsG0180004060.01	MsG0580024032.01	0.803819	2.905893e-49	1.474664e-46
MsG0180004388.01	MsG0580024032.01	0.836015	1.198751e-56	1.491481e-53
MsG0180004651.01	MsG0580024032.01	0.804065	2.583126e-49	1.319231e-46
MsG0180005050.01	MsG0580024032.01	0.814593	1.423776e-51	9.593513e-49
MsG0180006235.01	MsG0580024032.01	0.802812	4.697338e-49	2.323140e-46
MsG0280006375.01	MsG0580024032.01	0.830258	3.249865e-55	3.406327e-52
MsG0280006407.01	MsG0580024032.01	0.803492	3.397335e-49	1.709641e-46
MsG0280010614.01	MsG0580024032.01	0.821210	4.557371e-53	3.684435e-50
MsG0280010752.01	MsG0580024032.01	0.826240	3.023411e-54	2.819503e-51
MsG0280011293.01	MsG0580024032.01	0.801337	9.443033e-49	4.498180e-46
MsG0280011446.01	MsG0580024032.01	0.806724	7.159366e-50	3.914422e-47
MsG0380014573.01	MsG0580024032.01	0.819354	1.214021e-52	9.319436e-50
MsG0480018576.01	MsG0580024032.01	0.810063	1.388884e-50	8.290106e-48
MsG0480018640.01	MsG0580024032.01	0.816230	6.154992e-52	4.336599e-49
MsG0480018970.01	MsG0580024032.01	0.824182	9.271407e-54	8.152435e-51
MsG0480019816.01	MsG0580024032.01	0.800722	1.261068e-48	5.914250e-46
MsG0480020674.01	MsG0580024032.01	0.803773	2.970763e-49	1.505773e-46
MsG0480020886.01	MsG0580024032.01	0.812097	5.033116e-51	3.170761e-48
MsG0480022480.01	MsG0580024032.01	0.835991	1.215481e-56	1.511271e-53
MsG0480022551.01	MsG0580024032.01	0.836189	1.082796e-56	1.354561e-53
MsG0480023224.01	MsG0580024032.01	0.810367	1.193849e-50	7.182781e-48
MsG0480023410.01	MsG0580024032.01	0.827448	1.555742e-54	1.502429e-51
MsG0580024032.01	MsG0580024082.01	0.822725	2.031243e-53	1.714126e-50
MsG0580024032.01	MsG0580024114.01	0.805088	1.580548e-49	8.287022e-47
MsG0580024032.01	MsG0580024393.01	0.833857	4.189850e-56	4.886559e-53
MsG0580024032.01	MsG0580024779.01	0.826836	2.179982e-54	2.067807e-51
MsG0580024032.01	MsG0580024825.01	0.806489	8.022740e-50	4.360236e-47
MsG0580024032.01	MsG0580025321.01	0.807801	4.232688e-50	2.379929e-47
MsG0580024032.01	MsG0580025807.01	0.822326	2.515544e-53	2.098808e-50
MsG0580024032.01	MsG0580029189.01	0.847893	8.667039e-60	1.562988e-56
MsG0580024032.01	MsG0580029474.01	0.805250	1.461500e-49	7.694551e-47
MsG0580024032.01	MsG0580029826.01	0.803030	4.234784e-49	2.105847e-46
MsG0580024032.01	MsG0580029960.01	0.803992	2.674750e-49	1.363476e-46
MsG0580024032.01	MsG0580030235.01	0.824956	6.094991e-54	5.480014e-51
MsG0580024032.01	MsG0680030685.01	0.823250	1.532245e-53	1.312261e-50
MsG0580024032.01	MsG0680035844.01	0.807901	4.029727e-50	2.271610e-47
MsG0580024032.01	MsG0780038401.01	0.808207	3.468357e-50	1.971223e-47
MsG0580024032.01	MsG0780038495.01	0.839133	1.900850e-57	2.600404e-54
MsG0580024032.01	MsG0780039252.01	0.806288	8.847176e-50	4.783721e-47
MsG0580024032.01	MsG0780039389.01	0.801440	8.994122e-49	4.295503e-46
MsG0580024032.01	MsG0780040030.01	0.803735	3.024911e-49	1.531748e-46
MsG0580024032.01	MsG0780040604.01	0.808755	2.649725e-50	1.527619e-47
MsG0580024032.01	MsG0780041456.01	0.802502	5.442174e-49	2.670145e-46
MsG0580024032.01	MsG0880042543.01	0.846873	1.652328e-59	2.883964e-56
MsG0580024032.01	MsG0880042744.01	0.813508	2.471004e-51	1.616767e-48
MsG0580024032.01	MsG0880045937.01	0.817053	4.026287e-52	2.901434e-49
MsG0580024032.01	MsG0880046669.01	0.812682	3.748997e-51	2.399068e-48
MsG0580024032.01	MsG0880046753.01	0.803041	4.211372e-49	2.094821e-46
MsG0380015713.01	MsG0580024032.01	0.823791	1.145375e-53	9.961688e-51
MsG0280007529.01	MsG0580024032.01	0.813620	2.334035e-51	1.531797e-48
MsG0280008384.01	MsG0580024032.01	0.815755	7.856390e-52	5.464253e-49
MsG0280009514.01	MsG0580024032.01	0.803309	3.706608e-49	1.856438e-46
MsG0280010170.01	MsG0580024032.01	0.800235	1.585086e-48	7.342545e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024032.01.T01	MTR_5g004600	96.947	131	4	0	50	180	12	142	5.96e-90	261
MsG0580024032.01.T01	MTR_0001s0580	77.083	48	11	0	1	48	40	87	1.94e-21	85.5
MsG0580024032.01.T01	MTR_0279s0030	77.083	48	11	0	1	48	13	60	3.40e-19	83.2
MsG0580024032.01.T01	MTR_1g029470	39.831	118	55	3	32	135	198	313	1.01e-18	82.8
MsG0580024032.01.T01	MTR_8g037810	51.190	84	39	1	50	133	237	318	5.31e-18	80.5
MsG0580024032.01.T01	MTR_1g029460	41.667	84	47	2	46	128	226	308	9.15e-16	74.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024032.01.T01	AT1G21080	63.566	129	43	2	46	174	142	266	9.39e-49	160
MsG0580024032.01.T01	AT1G21080	63.566	129	43	2	46	174	229	353	6.71e-48	160
MsG0580024032.01.T01	AT1G21080	63.566	129	43	2	46	174	229	353	7.46e-48	160
MsG0580024032.01.T01	AT1G76700	62.791	129	45	2	46	174	230	355	1.15e-42	147
MsG0580024032.01.T01	AT1G77020	47.778	90	46	1	50	138	233	322	1.51e-19	85.1
MsG0580024032.01.T01	AT4G39150	50.000	78	39	0	60	137	245	322	5.21e-19	83.2
MsG0580024032.01.T01	AT4G39150	50.000	78	39	0	60	137	245	322	5.21e-19	83.2
MsG0580024032.01.T01	AT4G39150	50.000	78	39	0	60	137	245	322	5.21e-19	83.2
MsG0580024032.01.T01	AT2G21510	51.389	72	35	0	60	131	247	318	6.50e-17	77.4
MsG0580024032.01.T01	AT2G21510	51.389	72	35	0	60	131	247	318	6.50e-17	77.4
MsG0580024032.01.T01	AT2G21510	51.389	72	35	0	60	131	247	318	8.30e-17	77.4
MsG0580024032.01.T01	AT2G21510	51.389	72	35	0	60	131	247	318	8.30e-17	77.4
MsG0580024032.01.T01	AT2G21510	51.389	72	35	0	60	131	247	318	9.11e-17	77.0

Find 44 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCACGTAGTTCTTCTTTCT+TGG	0.176561	5:-19428	None:intergenic
GAAGTTAGTTTATGAGAATA+AGG	0.224383	5:+17674	MsG0580024032.01.T01:CDS
TACACCAGTACTTGAAGATT+TGG	0.283792	5:-19675	None:intergenic
GCTATACAACGCGTTGCTTC+CGG	0.291253	5:-17550	None:intergenic
AATTTATGTACTGCTTTGTT+TGG	0.332629	5:-19605	None:intergenic
CTATACAACGCGTTGCTTCC+GGG	0.363662	5:-17549	None:intergenic
AACTCTTGGTAAAATCTTCC+AGG	0.368732	5:+19468	MsG0580024032.01.T01:CDS
GAACTACGTGCACGAGCAAA+AGG	0.400470	5:+19439	MsG0580024032.01.T01:CDS
CACATCTTCGTGAACGGGTG+CGG	0.415363	5:+17646	MsG0580024032.01.T01:CDS
TCTTTCCCGTGTCTGTCAAA+TGG	0.421026	5:+19292	MsG0580024032.01.T01:CDS
GAAGATTTGGGTGAGGTACT+AGG	0.424180	5:-19662	None:intergenic
ACACCAGTACTTGAAGATTT+GGG	0.429890	5:-19674	None:intergenic
GTATTCTTCAAGCTCTTCTT+CGG	0.430532	5:-19201	None:intergenic
AGGGCCGGTGCATCGTCAGC+TGG	0.482055	5:+17596	MsG0580024032.01.T01:CDS
AACCCATGCTGTCGCATCGC+AGG	0.483341	5:+19700	MsG0580024032.01.T01:CDS
GTTCCCACATCTTCGTGAAC+GGG	0.484735	5:+17641	MsG0580024032.01.T01:CDS
AAAGCAGTACATAAATTGAA+TGG	0.499865	5:+19611	MsG0580024032.01.T01:CDS
GCAAAAGGGTTGAAAACTCT+TGG	0.501287	5:+19454	MsG0580024032.01.T01:CDS
ACATCTTCGTGAACGGGTGC+GGG	0.518141	5:+17647	MsG0580024032.01.T01:CDS
TCACCCAAATCTTCAAGTAC+TGG	0.532073	5:+19671	MsG0580024032.01.T01:CDS
AAGAAACAACTCAGTTCAGA+AGG	0.534697	5:+19170	MsG0580024032.01.T01:CDS
GCATCCAGCTGACGATGCAC+CGG	0.536805	5:-17600	None:intergenic
CTTTGTCCAATCTCTATGCC+CGG	0.539581	5:+17531	None:intergenic
TAGACGGTTAAGACAGCCAA+TGG	0.543269	5:+19563	MsG0580024032.01.T01:intron
GGTTCCCACATCTTCGTGAA+CGG	0.547896	5:+17640	MsG0580024032.01.T01:CDS
CTCTCTGTGGAAGCTTAATG+TGG	0.565211	5:+19253	MsG0580024032.01.T01:CDS
CGCACCCGTTCACGAAGATG+TGG	0.567932	5:-17645	None:intergenic
GCTTAATGTGGCTGACATTG+AGG	0.568707	5:+19265	MsG0580024032.01.T01:CDS
GCACCTGCGATGCGACAGCA+TGG	0.568969	5:-19703	None:intergenic
AACAACCATTTGACAGACAC+GGG	0.573149	5:-19297	None:intergenic
TTGACAGACACGGGAAAGAG+TGG	0.595512	5:-19288	None:intergenic
AGTTCAATGTCAAATGAGCA+AGG	0.603026	5:+17576	MsG0580024032.01.T01:CDS
AAACAACCATTTGACAGACA+CGG	0.605275	5:-19298	None:intergenic
AATGTCAAATGAGCAAGGGC+CGG	0.607819	5:+17581	MsG0580024032.01.T01:CDS
AATTAATGATTGACTCTCTG+TGG	0.612175	5:+19240	MsG0580024032.01.T01:CDS
AACTACGTGCACGAGCAAAA+GGG	0.613702	5:+19440	MsG0580024032.01.T01:CDS
AGACGGTTAAGACAGCCAAT+GGG	0.619753	5:+19564	MsG0580024032.01.T01:intron
GATGCAGTAAGAAATAAGCA+AGG	0.623472	5:+17618	MsG0580024032.01.T01:CDS
CACCTGCGATGCGACAGCAT+GGG	0.633397	5:-19702	None:intergenic
AGTACTTGAAGATTTGGGTG+AGG	0.635864	5:-19669	None:intergenic
GTTCAATGTCAAATGAGCAA+GGG	0.649287	5:+17577	MsG0580024032.01.T01:CDS
ATGCAGTAAGAAATAAGCAA+GGG	0.665648	5:+17619	MsG0580024032.01.T01:CDS
GCACCCGTTCACGAAGATGT+GGG	0.668056	5:-17644	None:intergenic
AGAAACAACTCAGTTCAGAA+GGG	0.671630	5:+19171	MsG0580024032.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAACTATAAGAAAAACTT+AGG	+	Chr5:18653-18672	MsG0580024032.01.T01:intron	15.0%
!!!	AATATTTTTATATGTAGATG+AGG	+	Chr5:20117-20136	MsG0580024032.01.T01:intron	15.0%
!!!	ATATTTTTATATGTAGATGA+GGG	+	Chr5:20118-20137	MsG0580024032.01.T01:intron	15.0%
!!!	TCTAAATTTTTTCTTTGATT+TGG	+	Chr5:18967-18986	MsG0580024032.01.T01:intron	15.0%
!!!	TTACCTTTTTATTTTTGTTT+TGG	+	Chr5:17968-17987	MsG0580024032.01.T01:intron	15.0%
!!	AAAAAAGGAAAACGAATTTA+TGG	-	Chr5:18922-18941	None:intergenic	20.0%
!!	AAAAAATAGATGATAGATGT+CGG	-	Chr5:19740-19759	None:intergenic	20.0%
!!	AAAAAGGAAAACGAATTTAT+GGG	-	Chr5:18921-18940	None:intergenic	20.0%
!!	AACATAAATTAAAAAACACC+TGG	-	Chr5:19373-19392	None:intergenic	20.0%
!!	CATCCAAAACAAAAATAAAA+AGG	-	Chr5:17974-17993	None:intergenic	20.0%
!!	TATTTAGACTGATAGATAAT+AGG	+	Chr5:19000-19019	MsG0580024032.01.T01:intron	20.0%
!!!	ATAGCTTAATGTAGATTTTA+GGG	+	Chr5:19347-19366	MsG0580024032.01.T01:intron	20.0%
!!!	TGATAAATGCTTTTTCTTTA+TGG	+	Chr5:19106-19125	MsG0580024032.01.T01:intron	20.0%
!	AAAACTTAGGAAAGATTTAG+AGG	+	Chr5:18666-18685	MsG0580024032.01.T01:intron	25.0%
!	AAAGCAGTACATAAATTGAA+TGG	+	Chr5:19611-19630	MsG0580024032.01.T01:CDS	25.0%
!	AAATAAAAAGGTAAGAGCTT+AGG	-	Chr5:17962-17981	None:intergenic	25.0%
!	AAATTTAGACAGCTAGATAT+TGG	-	Chr5:18956-18975	None:intergenic	25.0%
!	AAGAGCAATACATACAAAAA+AGG	-	Chr5:20006-20025	None:intergenic	25.0%
!	AATAAAAAGGTAAGAGCTTA+GGG	-	Chr5:17961-17980	None:intergenic	25.0%
!	AATACATACAAAAAAGGACA+TGG	-	Chr5:20000-20019	None:intergenic	25.0%
!	AATTTAGACAGCTAGATATT+GGG	-	Chr5:18955-18974	None:intergenic	25.0%
!	ACACTCTTATAAGAAATCTA+TGG	+	Chr5:17721-17740	MsG0580024032.01.T01:intron	25.0%
!	ATACATACAAAAAAGGACAT+GGG	-	Chr5:19999-20018	None:intergenic	25.0%
!	CACTAATGATCTATTCATAT+TGG	+	Chr5:19033-19052	MsG0580024032.01.T01:intron	25.0%
!	GTTCTATCATAAACCATATT+TGG	-	Chr5:18706-18725	None:intergenic	25.0%
!	TGTACACTATATTAAGAGTA+GGG	-	Chr5:19506-19525	None:intergenic	25.0%
!	TTGGGGAGAAAATAAAAAAA+AGG	-	Chr5:18937-18956	None:intergenic	25.0%
!	TTTCATTGTTAAACAAGTTG+AGG	+	Chr5:19786-19805	MsG0580024032.01.T01:intron	25.0%
!!	AAGTCTTATCTAACTAAATG+GGG	-	Chr5:18759-18778	None:intergenic	25.0%
!!	AATTTATGTACTGCTTTGTT+TGG	-	Chr5:19608-19627	None:intergenic	25.0%
!!	CAAGTCTTATCTAACTAAAT+GGG	-	Chr5:18760-18779	None:intergenic	25.0%
!!	GAAGTTAGTTTATGAGAATA+AGG	+	Chr5:17674-17693	MsG0580024032.01.T01:CDS	25.0%
!!	GATAGCTTAATGTAGATTTT+AGG	+	Chr5:19346-19365	MsG0580024032.01.T01:intron	25.0%
!!	TAAATCATCGTATTCAAGTT+GGG	+	Chr5:18264-18283	MsG0580024032.01.T01:intron	25.0%
!!!	AAAGTAACACTTAAGTTGAA+AGG	+	Chr5:18326-18345	MsG0580024032.01.T01:intron	25.0%
!!!	ATAAGGTTTGTTTTGTAACA+TGG	+	Chr5:17691-17710	MsG0580024032.01.T01:intron	25.0%
!!!	ATTTAAGCTTTAGAGAAGAA+GGG	+	Chr5:17841-17860	MsG0580024032.01.T01:intron	25.0%
!!!	TAGAAAAGATGATGGAAAAT+AGG	+	Chr5:18537-18556	MsG0580024032.01.T01:intron	25.0%
	AAGAATACAATGCATGAACA+TGG	-	Chr5:19768-19787	None:intergenic	30.0%
	ACACCATTTGAAAAAGAGTT+AGG	+	Chr5:18501-18520	MsG0580024032.01.T01:intron	30.0%
	ACCTATAGTAGAAAAGATGA+TGG	+	Chr5:18529-18548	MsG0580024032.01.T01:intron	30.0%
	AGATTTAGAGGTTAATGAGT+TGG	+	Chr5:18678-18697	MsG0580024032.01.T01:intron	30.0%
	ATAACAATAGGATTGCATGA+AGG	+	Chr5:17930-17949	MsG0580024032.01.T01:intron	30.0%
	ATACAAGAAACTAAATGGGT+AGG	+	Chr5:17788-17807	MsG0580024032.01.T01:intron	30.0%
	ATGCAGTAAGAAATAAGCAA+GGG	+	Chr5:17619-17638	MsG0580024032.01.T01:CDS	30.0%
	ATTTAGACAGCTAGATATTG+GGG	-	Chr5:18954-18973	None:intergenic	30.0%
	CACCATTTGAAAAAGAGTTA+GGG	+	Chr5:18502-18521	MsG0580024032.01.T01:intron	30.0%
	CCATTTAGTTAGATAAGACT+TGG	+	Chr5:18758-18777	MsG0580024032.01.T01:intron	30.0%
	GTAAATCATCGTATTCAAGT+TGG	+	Chr5:18263-18282	MsG0580024032.01.T01:intron	30.0%
	GTGCATACAAGAAACTAAAT+GGG	+	Chr5:17784-17803	MsG0580024032.01.T01:intron	30.0%
	GTGTACACTATATTAAGAGT+AGG	-	Chr5:19507-19526	None:intergenic	30.0%
	TAAGAAATCTATGGAAGTAG+TGG	+	Chr5:17730-17749	MsG0580024032.01.T01:intron	30.0%
	TAGAATGTAACTTCAGCAAT+AGG	+	Chr5:18160-18179	MsG0580024032.01.T01:intron	30.0%
	TATATTAATCGACTAGTGTG+AGG	+	Chr5:17877-17896	MsG0580024032.01.T01:intron	30.0%
	TCATGCAATCCTATTGTTAT+GGG	-	Chr5:17930-17949	None:intergenic	30.0%
	TGAGAATTAAGTAAGCATAG+CGG	+	Chr5:18421-18440	MsG0580024032.01.T01:intron	30.0%
	TGCTTACTTAATTCTCATGT+TGG	-	Chr5:18418-18437	None:intergenic	30.0%
	TGGTTTATGATAGAACACTA+TGG	+	Chr5:18710-18729	MsG0580024032.01.T01:intron	30.0%
	TGTGCATACAAGAAACTAAA+TGG	+	Chr5:17783-17802	MsG0580024032.01.T01:intron	30.0%
	TTCATGCAATCCTATTGTTA+TGG	-	Chr5:17931-17950	None:intergenic	30.0%
!	AATTAATGATTGACTCTCTG+TGG	+	Chr5:19240-19259	MsG0580024032.01.T01:CDS	30.0%
!	CCAAGTCTTATCTAACTAAA+TGG	-	Chr5:18761-18780	None:intergenic	30.0%
!	CTTTTTCTTTATGGTTCAAG+GGG	+	Chr5:19115-19134	MsG0580024032.01.T01:intron	30.0%
!	TAATGAGTTGGATCCAAATA+TGG	+	Chr5:18690-18709	MsG0580024032.01.T01:intron	30.0%
!	TCCATCATCTTTTCTACTAT+AGG	-	Chr5:18533-18552	None:intergenic	30.0%
!	TTTTGTATGTATTGCTCTTG+TGG	+	Chr5:20007-20026	MsG0580024032.01.T01:intron	30.0%
!!	GATTTAAGCTTTAGAGAAGA+AGG	+	Chr5:17840-17859	MsG0580024032.01.T01:intron	30.0%
!!	GCTTTTTCTTTATGGTTCAA+GGG	+	Chr5:19114-19133	MsG0580024032.01.T01:intron	30.0%
!!	TTGTCTTGCTTTTAATCAAG+CGG	-	Chr5:18133-18152	None:intergenic	30.0%
!!	TTTAAGCTTTAGAGAAGAAG+GGG	+	Chr5:17842-17861	MsG0580024032.01.T01:intron	30.0%
!!!	TACCCTAACTCTTTTTCAAA+TGG	-	Chr5:18507-18526	None:intergenic	30.0%
!!!	TGCTTTTTCTTTATGGTTCA+AGG	+	Chr5:19113-19132	MsG0580024032.01.T01:intron	30.0%
!!!	TTTTGTTTTGGATGTACTTG+CGG	+	Chr5:17980-17999	MsG0580024032.01.T01:intron	30.0%
	AAAATAGGCTTAGGTGGTTT+AGG	+	Chr5:18552-18571	MsG0580024032.01.T01:intron	35.0%
	AAACAACCATTTGACAGACA+CGG	-	Chr5:19301-19320	None:intergenic	35.0%
	AAACATGCATAGTAACCACA+CGG	-	Chr5:20097-20116	None:intergenic	35.0%
	AACATATCGTTGCTAACTCT+TGG	-	Chr5:18013-18032	None:intergenic	35.0%
	AACTCTTGGTAAAATCTTCC+AGG	+	Chr5:19468-19487	MsG0580024032.01.T01:CDS	35.0%
	AAGAAACAACTCAGTTCAGA+AGG	+	Chr5:19170-19189	MsG0580024032.01.T01:CDS	35.0%
	AAGTCCAGTACCAATATCAA+AGG	-	Chr5:18877-18896	None:intergenic	35.0%
	AATTTGACTACAACTTCCCT+AGG	+	Chr5:19907-19926	MsG0580024032.01.T01:intron	35.0%
	ACACCAGTACTTGAAGATTT+GGG	-	Chr5:19677-19696	None:intergenic	35.0%
	ACATCTCTTGCCTTTGATAT+TGG	+	Chr5:18864-18883	MsG0580024032.01.T01:intron	35.0%
	ACTCGCAATTTGAATGTAGA+CGG	+	Chr5:19547-19566	MsG0580024032.01.T01:intron	35.0%
	AGAAACAACTCAGTTCAGAA+GGG	+	Chr5:19171-19190	MsG0580024032.01.T01:CDS	35.0%
	AGTTCAATGTCAAATGAGCA+AGG	+	Chr5:17576-17595	MsG0580024032.01.T01:CDS	35.0%
	CAGGAGTTGCTCTATAAATT+AGG	-	Chr5:18816-18835	None:intergenic	35.0%
	CGTAATTTGATACATGTAGC+TGG	+	Chr5:18733-18752	MsG0580024032.01.T01:intron	35.0%
	GATGCAGTAAGAAATAAGCA+AGG	+	Chr5:17618-17637	MsG0580024032.01.T01:CDS	35.0%
	GTATTCTTCAAGCTCTTCTT+CGG	-	Chr5:19204-19223	None:intergenic	35.0%
	GTTCAATGTCAAATGAGCAA+GGG	+	Chr5:17577-17596	MsG0580024032.01.T01:CDS	35.0%
	TAAATGGGTAGGTGAAAAAG+CGG	+	Chr5:17799-17818	MsG0580024032.01.T01:intron	35.0%
	TACACCAGTACTTGAAGATT+TGG	-	Chr5:19678-19697	None:intergenic	35.0%
	TATGTTGTGTGCTTCACTTT+AGG	+	Chr5:19387-19406	MsG0580024032.01.T01:intron	35.0%
	TCTACACAACAGCAAATGTA+TGG	-	Chr5:19069-19088	None:intergenic	35.0%
	TTATGGGTAAAAGTAGCTGA+AGG	-	Chr5:18905-18924	None:intergenic	35.0%
!	GACGATTTTCCCATAACAAT+AGG	+	Chr5:17918-17937	MsG0580024032.01.T01:intron	35.0%
!	GCGGAAAAATTTGATAGTTC+AGG	+	Chr5:17818-17837	MsG0580024032.01.T01:intron	35.0%
!	TGATATTGGTACTGGACTTT+AGG	+	Chr5:18878-18897	MsG0580024032.01.T01:intron	35.0%
!!	AGATGATGGAAAATAGGCTT+AGG	+	Chr5:18543-18562	MsG0580024032.01.T01:intron	35.0%
!!	TTAAGCTTTAGAGAAGAAGG+GGG	+	Chr5:17843-17862	MsG0580024032.01.T01:intron	35.0%
!!!	TTAATGTAGATTTTAGGGCC+AGG	+	Chr5:19352-19371	MsG0580024032.01.T01:intron	35.0%
	AACAACCATTTGACAGACAC+GGG	-	Chr5:19300-19319	None:intergenic	40.0%
	ACAGACGATGTTGTATGGTA+CGG	+	Chr5:18373-18392	MsG0580024032.01.T01:intron	40.0%
	AGATGAGGGAGGAATTGAAT+GGG	+	Chr5:18066-18085	MsG0580024032.01.T01:intron	40.0%
	AGTACTTGAAGATTTGGGTG+AGG	-	Chr5:19672-19691	None:intergenic	40.0%
	ATACAATGCATGAACATGGC+TGG	-	Chr5:19764-19783	None:intergenic	40.0%
	ATCAGACAGACGATGTTGTA+TGG	+	Chr5:18368-18387	MsG0580024032.01.T01:intron	40.0%
	CAAGAGATGTCACAAGGATT+TGG	-	Chr5:18854-18873	None:intergenic	40.0%
	CTTGCCTTTGATATTGGTAC+TGG	+	Chr5:18870-18889	MsG0580024032.01.T01:intron	40.0%
	GCAAAAGGGTTGAAAACTCT+TGG	+	Chr5:19454-19473	MsG0580024032.01.T01:CDS	40.0%
	GCTATCTATCAATGAGACAC+TGG	-	Chr5:19332-19351	None:intergenic	40.0%
	GGAGGAATTGAATGGGAAAT+TGG	+	Chr5:18073-18092	MsG0580024032.01.T01:intron	40.0%
	GTAGATGATGTAGTCCTGTT+TGG	+	Chr5:18041-18060	MsG0580024032.01.T01:intron	40.0%
	GTAGGGAATGAAATATCACC+TGG	-	Chr5:19489-19508	None:intergenic	40.0%
	GTGGTAAAACTAGACGAGAT+AGG	+	Chr5:18468-18487	MsG0580024032.01.T01:intron	40.0%
	GTGTAGAACTTTCGCATAGT+AGG	+	Chr5:19082-19101	MsG0580024032.01.T01:intron	40.0%
	TAGATCAGATGCATGAGAGT+TGG	+	Chr5:18606-18625	MsG0580024032.01.T01:intron	40.0%
	TAGGCGAAGTAGTTATACCT+TGG	+	Chr5:18179-18198	MsG0580024032.01.T01:intron	40.0%
	TATACCTTGGAGGTGAAAGT+TGG	+	Chr5:18192-18211	MsG0580024032.01.T01:intron	40.0%
	TCACCCAAATCTTCAAGTAC+TGG	+	Chr5:19671-19690	MsG0580024032.01.T01:CDS	40.0%
	TGATGGAAAATAGGCTTAGG+TGG	+	Chr5:18546-18565	MsG0580024032.01.T01:intron	40.0%
	TGCACGTAGTTCTTCTTTCT+TGG	-	Chr5:19431-19450	None:intergenic	40.0%
!	AAGTAAGCATAGCGGAGATA+AGG	+	Chr5:18429-18448	MsG0580024032.01.T01:intron	40.0%
!	AATTGCATTGATCCAACTGC+AGG	+	Chr5:19139-19158	MsG0580024032.01.T01:intron	40.0%
!	ATTTTCGCTCTCATTCCCAT+TGG	-	Chr5:19582-19601	None:intergenic	40.0%
!!	AAGTAGTGGACACTATGACT+TGG	+	Chr5:17744-17763	MsG0580024032.01.T01:intron	40.0%
!!	ATCATCGTATTCAAGTTGGG+TGG	+	Chr5:18267-18286	MsG0580024032.01.T01:intron	40.0%
	AACTACGTGCACGAGCAAAA+GGG	+	Chr5:19440-19459	MsG0580024032.01.T01:CDS	45.0%
	AATGTCAAATGAGCAAGGGC+CGG	+	Chr5:17581-17600	MsG0580024032.01.T01:CDS	45.0%
	AATTGCATGCCTGCAAAGTG+TGG	-	Chr5:19891-19910	None:intergenic	45.0%
	ACACCATCATCAATCCTTGC+TGG	-	Chr5:19970-19989	None:intergenic	45.0%
	ACTAGTGTGAGGACGTATGA+GGG	+	Chr5:17888-17907	MsG0580024032.01.T01:intron	45.0%
	AGACGGTTAAGACAGCCAAT+GGG	+	Chr5:19564-19583	MsG0580024032.01.T01:intron	45.0%
	AGAGTTGGATCAAGAGGTTG+AGG	+	Chr5:18621-18640	MsG0580024032.01.T01:intron	45.0%
	AGGATGTTGCGTTAGATGAG+TGG	+	Chr5:18449-18468	MsG0580024032.01.T01:intron	45.0%
	AGTCCTGTTTGGAGAGATGA+GGG	+	Chr5:18052-18071	MsG0580024032.01.T01:intron	45.0%
	ATCTCCAACTTTCACCTCCA+AGG	-	Chr5:18199-18218	None:intergenic	45.0%
	ATTGCATGCCTGCAAAGTGT+GGG	-	Chr5:19890-19909	None:intergenic	45.0%
	CAAAGGCAAGAGATGTCACA+AGG	-	Chr5:18860-18879	None:intergenic	45.0%
	CAACCAGCAAGGATTGATGA+TGG	+	Chr5:19964-19983	MsG0580024032.01.T01:intron	45.0%
	CATCATCAATCCTTGCTGGT+TGG	-	Chr5:19966-19985	None:intergenic	45.0%
	CTCTCTGTGGAAGCTTAATG+TGG	+	Chr5:19253-19272	MsG0580024032.01.T01:CDS	45.0%
	CTTAGGTGGTTTAGGCATGT+AGG	+	Chr5:18560-18579	MsG0580024032.01.T01:intron	45.0%
	GAGATGAGGGAGGAATTGAA+TGG	+	Chr5:18065-18084	MsG0580024032.01.T01:intron	45.0%
	GCGAAGTAGTTATACCTTGG+AGG	+	Chr5:18182-18201	MsG0580024032.01.T01:intron	45.0%
	GCGGAAGTCATACGCTTATA+AGG	-	Chr5:18114-18133	None:intergenic	45.0%
	GCTTAATGTGGCTGACATTG+AGG	+	Chr5:19265-19284	MsG0580024032.01.T01:CDS	45.0%
	GTTATGGGAAAATCGTCGCT+AGG	-	Chr5:17915-17934	None:intergenic	45.0%
	TAGACGGTTAAGACAGCCAA+TGG	+	Chr5:19563-19582	MsG0580024032.01.T01:intron	45.0%
	TAGAGCAACTCCTGCTCTAA+AGG	+	Chr5:18822-18841	MsG0580024032.01.T01:intron	45.0%
	TAGTCCTGTTTGGAGAGATG+AGG	+	Chr5:18051-18070	MsG0580024032.01.T01:intron	45.0%
	TCTTCATATCCTCCTGCAGT+TGG	-	Chr5:19154-19173	None:intergenic	45.0%
	TCTTTCCCGTGTCTGTCAAA+TGG	+	Chr5:19292-19311	MsG0580024032.01.T01:CDS	45.0%
	TGCATGAGAGTTGGATCAAG+AGG	+	Chr5:18615-18634	MsG0580024032.01.T01:intron	45.0%
	TGTTGTATGGTACGGAGTGT+TGG	+	Chr5:18381-18400	MsG0580024032.01.T01:intron	45.0%
!	CTTTAGAGAAGAAGGGGGTT+AGG	+	Chr5:17848-17867	MsG0580024032.01.T01:intron	45.0%
!	GAAGATTTGGGTGAGGTACT+AGG	-	Chr5:19665-19684	None:intergenic	45.0%
!	GTTGTATGGTACGGAGTGTT+GGG	+	Chr5:18382-18401	MsG0580024032.01.T01:intron	45.0%
!	TGGACACTATGACTTGGAGT+AGG	+	Chr5:17750-17769	MsG0580024032.01.T01:intron	45.0%
!!	TTGGTGATCTCCTTTAGAGC+AGG	-	Chr5:18835-18854	None:intergenic	45.0%
	AGTAACCACACGGCACAATG+TGG	-	Chr5:20087-20106	None:intergenic	50.0%
	ATGAATGTAGAGCCCCTACG+TGG	+	Chr5:19860-19879	MsG0580024032.01.T01:intron	50.0%
	CTATACAACGCGTTGCTTCC+GGG	-	Chr5:17552-17571	None:intergenic	50.0%
	GAACTACGTGCACGAGCAAA+AGG	+	Chr5:19439-19458	MsG0580024032.01.T01:CDS	50.0%
	GACTAGTGTGAGGACGTATG+AGG	+	Chr5:17887-17906	MsG0580024032.01.T01:intron	50.0%
	GCTATACAACGCGTTGCTTC+CGG	-	Chr5:17553-17572	None:intergenic	50.0%
	GGTGGTTTAGGCATGTAGGT+AGG	+	Chr5:18564-18583	MsG0580024032.01.T01:intron	50.0%
	GGTTCCCACATCTTCGTGAA+CGG	+	Chr5:17640-17659	MsG0580024032.01.T01:CDS	50.0%
	GTTCCCACATCTTCGTGAAC+GGG	+	Chr5:17641-17660	MsG0580024032.01.T01:CDS	50.0%
	TCGTTGCTAACTCTTGGACG+TGG	-	Chr5:18007-18026	None:intergenic	50.0%
	TGTGTGCTGAAGATCGCATC+TGG	+	Chr5:20057-20076	MsG0580024032.01.T01:intron	50.0%
	TTGACAGACACGGGAAAGAG+TGG	-	Chr5:19291-19310	None:intergenic	50.0%
	TTGCATGCCTGCAAAGTGTG+GGG	-	Chr5:19889-19908	None:intergenic	50.0%
!	TGCATTGATCCAACTGCAGG+AGG	+	Chr5:19142-19161	MsG0580024032.01.T01:intron	50.0%
	AACCACACGGCACAATGTGG+CGG	-	Chr5:20084-20103	None:intergenic	55.0%
	AATGTAGAGCCCCTACGTGG+AGG	+	Chr5:19863-19882	MsG0580024032.01.T01:intron	55.0%
	ACATCTTCGTGAACGGGTGC+GGG	+	Chr5:17647-17666	MsG0580024032.01.T01:CDS	55.0%
	CACATCTTCGTGAACGGGTG+CGG	+	Chr5:17646-17665	MsG0580024032.01.T01:CDS	55.0%
	CCTCCCTCATCTCTCCAAAC+AGG	-	Chr5:18058-18077	None:intergenic	55.0%
	CCTGTTTGGAGAGATGAGGG+AGG	+	Chr5:18055-18074	MsG0580024032.01.T01:intron	55.0%
	GCACCCGTTCACGAAGATGT+GGG	-	Chr5:17647-17666	None:intergenic	55.0%
!	CAATCCTTGCTGGTTGGAGC+AGG	-	Chr5:19960-19979	None:intergenic	55.0%
!!	GTATGGTACGGAGTGTTGGG+CGG	+	Chr5:18385-18404	MsG0580024032.01.T01:intron	55.0%
	AAAGTGTGGGGCCTCCACGT+AGG	-	Chr5:19877-19896	None:intergenic	60.0%
	AACCCATGCTGTCGCATCGC+AGG	+	Chr5:19700-19719	MsG0580024032.01.T01:CDS	60.0%
	AAGTGTGGGGCCTCCACGTA+GGG	-	Chr5:19876-19895	None:intergenic	60.0%
	CACCTGCGATGCGACAGCAT+GGG	-	Chr5:19705-19724	None:intergenic	60.0%
	CAGACCTGCTCCAACCAGCA+AGG	+	Chr5:19953-19972	MsG0580024032.01.T01:intron	60.0%
	CGCACCCGTTCACGAAGATG+TGG	-	Chr5:17648-17667	None:intergenic	60.0%
	GCATCCAGCTGACGATGCAC+CGG	-	Chr5:17603-17622	None:intergenic	60.0%
	GCTGGTTGGAGCAGGTCTGT+GGG	-	Chr5:19952-19971	None:intergenic	60.0%
!	TGCTGGTTGGAGCAGGTCTG+TGG	-	Chr5:19953-19972	None:intergenic	60.0%
	AGCAGGTCTGTGGGCACCTG+GGG	-	Chr5:19943-19962	None:intergenic	65.0%
	AGTGTGGGGCCTCCACGTAG+GGG	-	Chr5:19875-19894	None:intergenic	65.0%
	GAGCAGGTCTGTGGGCACCT+GGG	-	Chr5:19944-19963	None:intergenic	65.0%
	GCACCTGCGATGCGACAGCA+TGG	-	Chr5:19706-19725	None:intergenic	65.0%
	GTCCGCCACATTGTGCCGTG+TGG	+	Chr5:20079-20098	MsG0580024032.01.T01:intron	65.0%
	GTGGAGGCCCCACACTTTGC+AGG	+	Chr5:19879-19898	MsG0580024032.01.T01:intron	65.0%
	AGGGCCGGTGCATCGTCAGC+TGG	+	Chr5:17596-17615	MsG0580024032.01.T01:CDS	70.0%
	AGGTCTGTGGGCACCTGGGG+GGG	-	Chr5:19940-19959	None:intergenic	70.0%
	CAGGTCTGTGGGCACCTGGG+GGG	-	Chr5:19941-19960	None:intergenic	70.0%
	GCAGGTCTGTGGGCACCTGG+GGG	-	Chr5:19942-19961	None:intergenic	70.0%
	GGAGCAGGTCTGTGGGCACC+TGG	-	Chr5:19945-19964	None:intergenic	70.0%
	TCTGTGGGCACCTGGGGGGG+CGG	-	Chr5:19937-19956	None:intergenic	75.0%
!!	CTGGGGGGGCGGTTGGCCTA+GGG	-	Chr5:19926-19945	None:intergenic	75.0%
!	CCTAGGCCAACCGCCCCCCC+AGG	+	Chr5:19924-19943	MsG0580024032.01.T01:intron	80.0%
!	TGGGCACCTGGGGGGGCGGT+TGG	-	Chr5:19933-19952	None:intergenic	80.0%
!!!	CCTGGGGGGGCGGTTGGCCT+AGG	-	Chr5:19927-19946	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	17546	20157	17546	ID=MsG0580024032.01;Name=MsG0580024032.01
Chr5	mRNA	17546	20157	17546	ID=MsG0580024032.01.T01;Parent=MsG0580024032.01;Name=MsG0580024032.01.T01;_AED=0.47;_eAED=0.63;_QI=0\|0.5\|0.4\|1\|1\|1\|5\|0\|187
Chr5	exon	17546	17695	17546	ID=MsG0580024032.01.T01:exon:22900;Parent=MsG0580024032.01.T01
Chr5	exon	19161	19313	19161	ID=MsG0580024032.01.T01:exon:22901;Parent=MsG0580024032.01.T01
Chr5	exon	19409	19489	19409	ID=MsG0580024032.01.T01:exon:22902;Parent=MsG0580024032.01.T01
Chr5	exon	19566	19721	19566	ID=MsG0580024032.01.T01:exon:22903;Parent=MsG0580024032.01.T01
Chr5	exon	20134	20157	20134	ID=MsG0580024032.01.T01:exon:22904;Parent=MsG0580024032.01.T01
Chr5	CDS	17546	17695	17546	ID=MsG0580024032.01.T01:cds;Parent=MsG0580024032.01.T01
Chr5	CDS	19161	19313	19161	ID=MsG0580024032.01.T01:cds;Parent=MsG0580024032.01.T01
Chr5	CDS	19409	19489	19409	ID=MsG0580024032.01.T01:cds;Parent=MsG0580024032.01.T01
Chr5	CDS	19566	19721	19566	ID=MsG0580024032.01.T01:cds;Parent=MsG0580024032.01.T01
Chr5	CDS	20134	20157	20134	ID=MsG0580024032.01.T01:cds;Parent=MsG0580024032.01.T01

Gene Sequence

>MsG0580024032.01.T01

ATGCCCGGAAGCAACGCGTTGTATAGCTCGAGTTCAATGTCAAATGAGCAAGGGCCGGTGCATCGTCAGCTGGATGCAGTAAGAAATAAGCAAGGGTTCCCACATCTTCGTGAACGGGTGCGGGTAAAGAAGTTAGTTTATGAGAATAAGGAGGATATGAAGAAACAACTCAGTTCAGAAGGGAACTACACCGAAGAAGAGCTTGAAGAATACATGCAATCTCATAAGAAATTAATGATTGACTCTCTGTGGAAGCTTAATGTGGCTGACATTGAGGCCACTCTTTCCCGTGTCTGTCAAATGGTTCTTCAAGATAGCAGTGCCAAGAAAGAAGAACTACGTGCACGAGCAAAAGGGTTGAAAACTCTTGGTAAAATCTTCCAGACGGTTAAGACAGCCAATGGGAATGAGAGCGAAAATATACCAAACAAAGCAGTACATAAATTGAATGGAAGTGAAACTAGCAATGATGTTTGTTCTCCTAGTACCTCACCCAAATCTTCAAGTACTGGTGTATCAACCCATGCTGTCGCATCGCAGATGAGGGATGATAGTTTGAAGTAG

Protein sequence

>MsG0580024032.01.T01

MPGSNALYSSSSMSNEQGPVHRQLDAVRNKQGFPHLRERVRVKKLVYENKEDMKKQLSSEGNYTEEELEEYMQSHKKLMIDSLWKLNVADIEATLSRVCQMVLQDSSAKKEELRARAKGLKTLGKIFQTVKTANGNESENIPNKAVHKLNGSETSNDVCSPSTSPKSSSTGVSTHAVASQMRDDSLK*