AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018640.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018640.01.T01 MTR_4g015830 81.169 154 0 1 8 161 116 240 3.54e-84 247
MsG0480018640.01.T01 MTR_7g068590 70.513 156 15 3 8 161 116 242 2.44e-65 200
MsG0480018640.01.T01 MTR_8g019520 46.012 163 54 4 8 161 120 257 2.16e-33 119
MsG0480018640.01.T01 MTR_8g019520 46.012 163 53 4 8 161 120 256 4.71e-33 117
MsG0480018640.01.T01 MTR_2g040990 44.578 166 45 5 8 161 123 253 1.24e-32 116
MsG0480018640.01.T01 MTR_1g015185 44.304 158 69 3 8 161 121 263 9.40e-32 114
MsG0480018640.01.T01 MTR_4g134510 47.531 162 48 5 8 160 121 254 3.26e-31 113
MsG0480018640.01.T01 MTR_2g099500 46.795 156 59 3 8 160 116 250 3.65e-31 112
MsG0480018640.01.T01 MTR_8g066480 37.576 165 45 6 8 161 29 146 4.46e-19 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018640.01.T01 AT5G05610 61.688 154 28 3 8 160 117 240 2.16e-52 167
MsG0480018640.01.T01 AT5G05610 61.688 154 28 3 8 160 117 240 2.16e-52 167
MsG0480018640.01.T01 AT3G11200 58.333 156 33 4 8 160 119 245 6.10e-48 155
MsG0480018640.01.T01 AT3G11200 58.333 156 33 4 8 160 106 232 6.13e-48 155
MsG0480018640.01.T01 AT3G42790 47.771 157 50 3 8 160 121 249 1.56e-38 132
MsG0480018640.01.T01 AT5G20510 46.835 158 62 4 8 161 80 219 2.99e-36 125
MsG0480018640.01.T01 AT5G20510 46.835 158 62 4 8 161 121 260 6.44e-36 125
MsG0480018640.01.T01 AT2G02470 44.516 155 67 3 8 161 120 256 1.69e-31 114
MsG0480018640.01.T01 AT2G02470 45.161 155 57 3 8 161 120 247 3.35e-31 112
MsG0480018640.01.T01 AT5G26210 43.137 153 69 1 8 160 120 254 3.90e-28 105
MsG0480018640.01.T01 AT1G14510 42.308 156 58 3 8 158 120 248 2.79e-27 102

Find 80 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACAACGCAGATGAATTT+TGG 0.157167 4:-7942723 MsG0480018640.01.T01:CDS
ATTCGCGTAGATCTCAAATT+AGG 0.172171 4:-7945909 MsG0480018640.01.T01:five_prime_UTR
ACAGTGGGCTTGTCCTTTAT+TGG 0.181225 4:+7943737 None:intergenic
ATTTGAGATCTACGCGAATT+AGG 0.219320 4:+7945913 None:intergenic
ATAGTCTTCTCTCTCTTCTT+AGG 0.232246 4:-7946071 MsG0480018640.01.T01:five_prime_UTR
GATCTCAAATTAGGGTTATA+TGG 0.286343 4:-7945900 MsG0480018640.01.T01:five_prime_UTR
TTTGAGATCTACGCGAATTA+GGG 0.313655 4:+7945914 None:intergenic
TGAAAGGTACTATCTAGTTT+TGG 0.337996 4:-7944400 MsG0480018640.01.T01:five_prime_UTR
CCTTGATCATCTACCAACTT+TGG 0.339320 4:+7942802 None:intergenic
CTTGATCATCTACCAACTTT+GGG 0.343249 4:+7942803 None:intergenic
CCCTCTTGATGCTGCATGAT+GGG 0.346306 4:+7942611 None:intergenic
AAGGACAATTTGTGTCTCTA+TGG 0.371740 4:-7944615 MsG0480018640.01.T01:five_prime_UTR
TTCGCGTAGATCTCAAATTA+GGG 0.373524 4:-7945908 MsG0480018640.01.T01:five_prime_UTR
TTGCTGTGCACAGTGATTCA+TGG 0.385123 4:-7944467 MsG0480018640.01.T01:five_prime_UTR
GATCTACGCGAATTAGGGTT+AGG 0.386519 4:+7945919 None:intergenic
CCCCTCTTGATGCTGCATGA+TGG 0.392694 4:+7942610 None:intergenic
TTGATGGTTCCACTGATTCA+TGG 0.409073 4:-7943827 MsG0480018640.01.T01:CDS
TGATTGATGATGATGTAAAA+AGG 0.418132 4:+7946042 None:intergenic
AACTGACAGGAAGCCAATAA+AGG 0.424689 4:-7943750 MsG0480018640.01.T01:CDS
AGAGCTGGCTCTGGAAGCTC+AGG 0.435016 4:+7944543 None:intergenic
GCAAAATTGATTCCGAGAGC+TGG 0.436616 4:+7944528 None:intergenic
GGTAGATGATCAAGGTTATG+AGG 0.436700 4:-7942794 MsG0480018640.01.T01:CDS
AAATTAGGGTTATATGGAAA+TGG 0.439714 4:-7945894 MsG0480018640.01.T01:five_prime_UTR
TAAGAAGAGAGAGAAGACTA+TGG 0.449424 4:+7946073 None:intergenic
TTTATGCTCTCAGCTTTAGC+AGG 0.457037 4:+7942646 None:intergenic
TTGATTCCGAGAGCTGGCTC+TGG 0.460709 4:+7944534 None:intergenic
GACTAAGCCATGTGAGTGAA+TGG 0.469690 4:+7946005 None:intergenic
AAAACTTTAAAAGGTTTCGT+AGG 0.470015 4:-7942912 MsG0480018640.01.T01:intron
TCGTAGGGACTGGCTTTCCC+TGG 0.475159 4:-7944490 MsG0480018640.01.T01:five_prime_UTR
TCCGCCGCAGCTCCCACAAA+GGG 0.477598 4:+7942747 None:intergenic
ATCTACGCGAATTAGGGTTA+GGG 0.488621 4:+7945920 None:intergenic
CATGCAGCATCAAGAGGGGC+AGG 0.494600 4:-7942606 MsG0480018640.01.T01:CDS
TAGATAGTGGAAGCAAATCT+CGG 0.498320 4:-7943715 MsG0480018640.01.T01:CDS
GACAAGCCCACTGTAGATAG+TGG 0.500654 4:-7943728 MsG0480018640.01.T01:CDS
TGATTCATGGTTGCTTTCTG+TGG 0.500780 4:-7944454 MsG0480018640.01.T01:five_prime_UTR
AAACTTTAAAAGGTTTCGTA+GGG 0.501369 4:-7942911 MsG0480018640.01.T01:intron
ATGGACATACAAATGAATCA+TGG 0.502709 4:-7944596 MsG0480018640.01.T01:five_prime_UTR
ATCGTTCGTGCTTTAACTCA+AGG 0.504242 4:-7945812 MsG0480018640.01.T01:intron
TCAGGCGGAACTTCCTCAGC+AGG 0.510809 4:+7944561 None:intergenic
AGATAGTGGAAGCAAATCTC+GGG 0.517645 4:-7943714 MsG0480018640.01.T01:CDS
AGCATAGCGAAACCCTTTGT+GGG 0.525663 4:-7942759 MsG0480018640.01.T01:CDS
CCAAAGTTGGTAGATGATCA+AGG 0.527823 4:-7942802 MsG0480018640.01.T01:CDS
ACCCTTTGTGGGAGCTGCGG+CGG 0.528826 4:-7942748 MsG0480018640.01.T01:CDS
GCTGGCTCTGGAAGCTCAGG+CGG 0.533220 4:+7944546 None:intergenic
CAAGGGATGGCATGAATCGT+AGG 0.533281 4:-7944506 MsG0480018640.01.T01:five_prime_UTR
GTTACAACTTCAAACACAGT+TGG 0.536280 4:+7943770 None:intergenic
AGTTAAAAGCAACCCAAAGT+TGG 0.536587 4:-7942815 MsG0480018640.01.T01:CDS
AATGACAATTACACTAACCT+TGG 0.538755 4:+7943685 None:intergenic
GAGCATAGCGAAACCCTTTG+TGG 0.541036 4:-7942760 MsG0480018640.01.T01:CDS
ATTTGTGAGAGGTGGTATCA+TGG 0.548216 4:-7942688 MsG0480018640.01.T01:CDS
GATTTCAGTTCTCGTAGAGA+TGG 0.549093 4:-7945836 MsG0480018640.01.T01:five_prime_UTR
TGGTTCCACTGATTCATGGC+AGG 0.552785 4:-7943823 MsG0480018640.01.T01:CDS
GAGCTTCCAGAGCCAGCTCT+CGG 0.564310 4:-7944540 MsG0480018640.01.T01:five_prime_UTR
TTGCTTCCACTATCTACAGT+GGG 0.566601 4:+7943722 None:intergenic
TGGACATACAAATGAATCAT+GGG 0.567578 4:-7944595 MsG0480018640.01.T01:five_prime_UTR
ATGGCATGAATCGTAGGGAC+TGG 0.570245 4:-7944500 MsG0480018640.01.T01:five_prime_UTR
CCCATCATGCAGCATCAAGA+GGG 0.580342 4:-7942611 MsG0480018640.01.T01:CDS
AATCACTGTGCACAGCAACC+AGG 0.586711 4:+7944472 None:intergenic
GATCGATCCATTCACTCACA+TGG 0.590206 4:-7946012 MsG0480018640.01.T01:five_prime_UTR
ATCTTTGAAGATCTCTTCAA+CGG 0.591608 4:+7945856 None:intergenic
TGTTTGAAGTTGTAACTGAC+AGG 0.592105 4:-7943763 MsG0480018640.01.T01:CDS
CTCGTCTTAACCGCAATGAA+AGG 0.595014 4:-7944416 MsG0480018640.01.T01:five_prime_UTR
AGATGATCAAGGTTATGAGG+AGG 0.601386 4:-7942791 MsG0480018640.01.T01:CDS
GGAGGTGACTCTTCCTGCTG+AGG 0.601723 4:-7944574 MsG0480018640.01.T01:five_prime_UTR
CGTTTCCTGCCATGAATCAG+TGG 0.602757 4:+7943818 None:intergenic
CAAATCTCGGGGCAGCACCA+AGG 0.607568 4:-7943702 MsG0480018640.01.T01:CDS
ATCACTGTGCACAGCAACCA+GGG 0.609018 4:+7944473 None:intergenic
AAGGGATGGCATGAATCGTA+GGG 0.619740 4:-7944505 MsG0480018640.01.T01:five_prime_UTR
AAGATCTCTTCAACGGTACG+AGG 0.622170 4:+7945863 None:intergenic
TTCCGCCGCAGCTCCCACAA+AGG 0.623737 4:+7942746 None:intergenic
GCCCATCATGCAGCATCAAG+AGG 0.626783 4:-7942612 MsG0480018640.01.T01:CDS
GAAACCCTTTGTGGGAGCTG+CGG 0.627662 4:-7942751 MsG0480018640.01.T01:CDS
GCTGTGATATTTGTGAGAGG+TGG 0.631217 4:-7942696 MsG0480018640.01.T01:CDS
TTTGCTTCCACTATCTACAG+TGG 0.644126 4:+7943721 None:intergenic
TTGGCTGTGATATTTGTGAG+AGG 0.646263 4:-7942699 MsG0480018640.01.T01:CDS
CTAGATAGTACCTTTCATTG+CGG 0.646490 4:+7944406 None:intergenic
CCATCATGCAGCATCAAGAG+GGG 0.665722 4:-7942610 MsG0480018640.01.T01:CDS
TATTTGAAGAGATCAAGTGA+TGG 0.665948 4:-7942841 MsG0480018640.01.T01:CDS
ACATACAAATGAATCATGGG+AGG 0.708440 4:-7944592 MsG0480018640.01.T01:five_prime_UTR
GATAGTGGAAGCAAATCTCG+GGG 0.712141 4:-7943713 MsG0480018640.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAATAAAAAACACA+TGG + Chr4:7943241-7943260 None:intergenic 10.0%
!! TTAAAAAATAAAAAACACAT+GGG + Chr4:7943240-7943259 None:intergenic 10.0%
!!! AGAGTTAAATTTTATTTTTT+TGG - Chr4:7943179-7943198 MsG0480018640.01.T01:intron 10.0%
!!! GCATTAATTTTTTTTTTTTT+AGG - Chr4:7945230-7945249 MsG0480018640.01.T01:intron 10.0%
!!! TTAAATTCAATTTGTTTTTT+TGG - Chr4:7942906-7942925 MsG0480018640.01.T01:intron 10.0%
!! CTATGAATTAAAACTTTAAA+AGG - Chr4:7945750-7945769 MsG0480018640.01.T01:intron 15.0%
!! GTTTGTTTGTTTATTTATTT+AGG - Chr4:7943270-7943289 MsG0480018640.01.T01:intron 15.0%
!!! TGTTTTAAAATAGTATGATT+CGG - Chr4:7943457-7943476 MsG0480018640.01.T01:intron 15.0%
!! AAGTTTATATATGTATTCCT+TGG - Chr4:7944482-7944501 MsG0480018640.01.T01:five_prime_UTR 20.0%
!! AGTTTCTTGAATTGTAAATA+TGG + Chr4:7944567-7944586 None:intergenic 20.0%
!! GGTATTAAAAAAAAATTGGA+GGG - Chr4:7945192-7945211 MsG0480018640.01.T01:intron 20.0%
!!! AGTTTGATTTACTATTTGTA+TGG - Chr4:7944716-7944735 MsG0480018640.01.T01:intron 20.0%
!!! ATAGTAATTTAAGTACGTTT+TGG - Chr4:7944301-7944320 MsG0480018640.01.T01:intron 20.0%
!!! TAATGATTTTCTCAATTCAA+AGG + Chr4:7943402-7943421 None:intergenic 20.0%
!!! TTATTTTTTTGGAGAATTTG+AGG - Chr4:7943190-7943209 MsG0480018640.01.T01:intron 20.0%
! AAATTAGGGTTATATGGAAA+TGG - Chr4:7942777-7942796 MsG0480018640.01.T01:CDS 25.0%
! AAATTGTTAAGAGCTTGAAT+TGG - Chr4:7943669-7943688 MsG0480018640.01.T01:intron 25.0%
! AATTGTTAAGAGCTTGAATT+GGG - Chr4:7943670-7943689 MsG0480018640.01.T01:intron 25.0%
! ATTGTAAATATGGATGAGAA+AGG + Chr4:7944557-7944576 None:intergenic 25.0%
! ATTTGAGGAAAAAAAGTCAA+AGG - Chr4:7943205-7943224 MsG0480018640.01.T01:intron 25.0%
! CTAATAATTCTACATGTTTG+TGG - Chr4:7943631-7943650 MsG0480018640.01.T01:intron 25.0%
! GGGTATTAAAAAAAAATTGG+AGG - Chr4:7945191-7945210 MsG0480018640.01.T01:intron 25.0%
! TTGAGAATCACAATCAAATT+TGG - Chr4:7943753-7943772 MsG0480018640.01.T01:CDS 25.0%
! TTGTAAATATGGATGAGAAA+GGG + Chr4:7944556-7944575 None:intergenic 25.0%
! TTTACAATTCAAGAAACTTG+AGG - Chr4:7944569-7944588 MsG0480018640.01.T01:five_prime_UTR 25.0%
!! AAAACTTTAAAAGGTTTCGT+AGG - Chr4:7945759-7945778 MsG0480018640.01.T01:intron 25.0%
!! AAACTTTAAAAGGTTTCGTA+GGG - Chr4:7945760-7945779 MsG0480018640.01.T01:intron 25.0%
!! AGGAACTATAATAAAGTGTT+TGG - Chr4:7945456-7945475 MsG0480018640.01.T01:intron 25.0%
!!! AATTTTTTTTTAATACCCCC+AGG + Chr4:7945189-7945208 None:intergenic 25.0%
!!! CTTTGAAATGTTAAGAATTG+AGG - Chr4:7944403-7944422 MsG0480018640.01.T01:five_prime_UTR 25.0%
!!! TGATTGATGATGATGTAAAA+AGG + Chr4:7942632-7942651 None:intergenic 25.0%
!!! TGGGGGTATTAAAAAAAAAT+TGG - Chr4:7945188-7945207 MsG0480018640.01.T01:intron 25.0%
!!! TTTATTTGTTGTATAGTCTC+TGG - Chr4:7945483-7945502 MsG0480018640.01.T01:intron 25.0%
!!! TTTTTGCTTTGATTTGCAAT+TGG - Chr4:7944623-7944642 MsG0480018640.01.T01:intron 25.0%
!!! TTTTTTTTTTTTTAGGCCCA+TGG - Chr4:7945237-7945256 MsG0480018640.01.T01:intron 25.0%
AAAGCAATAAGCCCTTAAAA+CGG + Chr4:7944772-7944791 None:intergenic 30.0%
AAAGTAGTGTGATAGTTGAA+CGG + Chr4:7945599-7945618 None:intergenic 30.0%
AATGACAATTACACTAACCT+TGG + Chr4:7944989-7945008 None:intergenic 30.0%
ACTATTTGTATGGTAGAATG+TGG - Chr4:7944726-7944745 MsG0480018640.01.T01:intron 30.0%
ATATGTATTCCTTGGATTGA+TGG - Chr4:7944490-7944509 MsG0480018640.01.T01:five_prime_UTR 30.0%
ATGGACATACAAATGAATCA+TGG - Chr4:7944075-7944094 MsG0480018640.01.T01:intron 30.0%
CAAAGCAGTTGAGAAAAAAA+TGG + Chr4:7944797-7944816 None:intergenic 30.0%
CAAGAAGACCTAATTCTAAT+AGG - Chr4:7945124-7945143 MsG0480018640.01.T01:intron 30.0%
CCAAATCAAAATCCAAAAAC+TGG + Chr4:7943883-7943902 None:intergenic 30.0%
CTAATTCTAATAGGCCTAAA+AGG - Chr4:7945133-7945152 MsG0480018640.01.T01:intron 30.0%
GATCTCAAATTAGGGTTATA+TGG - Chr4:7942771-7942790 MsG0480018640.01.T01:CDS 30.0%
GTATAATAACTCAACCACTT+AGG + Chr4:7943925-7943944 None:intergenic 30.0%
GTCCTTATCTTGAAAACAAA+AGG + Chr4:7944042-7944061 None:intergenic 30.0%
TAGAAGCAGGGTTTAAATAT+AGG + Chr4:7943852-7943871 None:intergenic 30.0%
TATAAGATGCCGTATATATG+CGG - Chr4:7945041-7945060 MsG0480018640.01.T01:intron 30.0%
TATCTTAAACTTGTCCTACA+GGG - Chr4:7943531-7943550 MsG0480018640.01.T01:intron 30.0%
TATGTATTCCTTGGATTGAT+GGG - Chr4:7944491-7944510 MsG0480018640.01.T01:five_prime_UTR 30.0%
TATTTGAAGAGATCAAGTGA+TGG - Chr4:7945830-7945849 MsG0480018640.01.T01:five_prime_UTR 30.0%
TCTGGGAAATAAAATTGTCT+TGG + Chr4:7944517-7944536 None:intergenic 30.0%
TGGAACCATCAATAAAAAGA+GGG + Chr4:7944836-7944855 None:intergenic 30.0%
TGGACATACAAATGAATCAT+GGG - Chr4:7944076-7944095 MsG0480018640.01.T01:intron 30.0%
TTAGTTAAAAAAGACACAGC+TGG + Chr4:7945559-7945578 None:intergenic 30.0%
! AAATTGGCCTGTTATTTACT+CGG - Chr4:7945359-7945378 MsG0480018640.01.T01:intron 30.0%
! ATCTTTGAAGATCTCTTCAA+CGG + Chr4:7942818-7942837 None:intergenic 30.0%
! CTTTTAGGCCTATTAGAATT+AGG + Chr4:7945135-7945154 None:intergenic 30.0%
! TGTTTGTATTCTTTTAAGCG+AGG - Chr4:7943694-7943713 MsG0480018640.01.T01:CDS 30.0%
! TTTTCTCAACTGCTTTGTAA+CGG - Chr4:7944800-7944819 MsG0480018640.01.T01:intron 30.0%
!! TCTAAGACATATCCAGTTTT+TGG - Chr4:7943868-7943887 MsG0480018640.01.T01:intron 30.0%
!!! CCAGTTTTTGGATTTTGATT+TGG - Chr4:7943880-7943899 MsG0480018640.01.T01:intron 30.0%
!!! CTTTTAAGCGAGGTTTTAAA+TGG - Chr4:7943704-7943723 MsG0480018640.01.T01:CDS 30.0%
!!! TGAAAGGTACTATCTAGTTT+TGG - Chr4:7944271-7944290 MsG0480018640.01.T01:intron 30.0%
!!! TGCCTTTTGTTTTCAAGATA+AGG - Chr4:7944037-7944056 MsG0480018640.01.T01:intron 30.0%
AAATGACTACCGTATACATG+AGG - Chr4:7945079-7945098 MsG0480018640.01.T01:intron 35.0%
AAGGACAATTTGTGTCTCTA+TGG - Chr4:7944056-7944075 MsG0480018640.01.T01:intron 35.0%
AAGGAGGGGGAAATTATTAA+CGG + Chr4:7944667-7944686 None:intergenic 35.0%
ACATACAAATGAATCATGGG+AGG - Chr4:7944079-7944098 MsG0480018640.01.T01:intron 35.0%
AGATTTAACAGACACCTAAG+TGG - Chr4:7943908-7943927 MsG0480018640.01.T01:intron 35.0%
AGCAGGGTTTAAATATAGGT+TGG + Chr4:7943848-7943867 None:intergenic 35.0%
AGTTAAAAGCAACCCAAAGT+TGG - Chr4:7945856-7945875 MsG0480018640.01.T01:five_prime_UTR 35.0%
AGTTCCTTTGTGTTTGATTC+AGG + Chr4:7945443-7945462 None:intergenic 35.0%
ATAGTCTTCTCTCTCTTCTT+AGG - Chr4:7942600-7942619 MsG0480018640.01.T01:CDS 35.0%
ATTCGCGTAGATCTCAAATT+AGG - Chr4:7942762-7942781 MsG0480018640.01.T01:CDS 35.0%
CGACACAATGTTTATGAAGT+TGG + Chr4:7943807-7943826 None:intergenic 35.0%
CTAGATAGTACCTTTCATTG+CGG + Chr4:7944268-7944287 None:intergenic 35.0%
CTTGATCATCTACCAACTTT+GGG + Chr4:7945871-7945890 None:intergenic 35.0%
GCAAAAAGTTACAACAGAGT+CGG + Chr4:7944610-7944629 None:intergenic 35.0%
GGAAATGCTCTTAGTTACTA+TGG - Chr4:7943952-7943971 MsG0480018640.01.T01:intron 35.0%
GTATCTTAAACTTGTCCTAC+AGG - Chr4:7943530-7943549 MsG0480018640.01.T01:intron 35.0%
GTGGAACCATCAATAAAAAG+AGG + Chr4:7944837-7944856 None:intergenic 35.0%
GTTACAACTTCAAACACAGT+TGG + Chr4:7944904-7944923 None:intergenic 35.0%
TAAAACAAGGGGACAGAAAA+TGG - Chr4:7945157-7945176 MsG0480018640.01.T01:intron 35.0%
TTCGCGTAGATCTCAAATTA+GGG - Chr4:7942763-7942782 MsG0480018640.01.T01:CDS 35.0%
TTCTCCTGAATCAAACACAA+AGG - Chr4:7945436-7945455 MsG0480018640.01.T01:intron 35.0%
TTGAGTTATTATACTCGTGC+TGG - Chr4:7943931-7943950 MsG0480018640.01.T01:intron 35.0%
TTGTATAGTCTCTGGTTACT+TGG - Chr4:7945491-7945510 MsG0480018640.01.T01:intron 35.0%
TTTCTCAACTGCTTTGTAAC+GGG - Chr4:7944801-7944820 MsG0480018640.01.T01:intron 35.0%
! AACGCAGATGAATTTTGGAT+TGG - Chr4:7945953-7945972 MsG0480018640.01.T01:five_prime_UTR 35.0%
! ACTACAACGCAGATGAATTT+TGG - Chr4:7945948-7945967 MsG0480018640.01.T01:five_prime_UTR 35.0%
! ATCAAAGTGCTTCTAAATGC+AGG + Chr4:7945676-7945695 None:intergenic 35.0%
! ATTTGAGATCTACGCGAATT+AGG + Chr4:7942761-7942780 None:intergenic 35.0%
! CTTTCTGTGGCTTTTTATCT+TGG - Chr4:7944230-7944249 MsG0480018640.01.T01:intron 35.0%
! GAATTAGGTCTTCTTGCTTT+TGG + Chr4:7945120-7945139 None:intergenic 35.0%
! TAGGTCCCTCTTTTTATTGA+TGG - Chr4:7944828-7944847 MsG0480018640.01.T01:intron 35.0%
! TCTCGGAATCAATTTTGCAA+GGG - Chr4:7944148-7944167 MsG0480018640.01.T01:intron 35.0%
! TGTTTGAAGTTGTAACTGAC+AGG - Chr4:7944908-7944927 MsG0480018640.01.T01:intron 35.0%
! TTTGAGATCTACGCGAATTA+GGG + Chr4:7942760-7942779 None:intergenic 35.0%
!! TAGATAGTGGAAGCAAATCT+CGG - Chr4:7944956-7944975 MsG0480018640.01.T01:intron 35.0%
!!! AGGTACTATCTAGTTTTGGT+TGG - Chr4:7944275-7944294 MsG0480018640.01.T01:intron 35.0%
!!! CTCTGTTATTGCCGTTTTAA+GGG - Chr4:7944758-7944777 MsG0480018640.01.T01:intron 35.0%
!!! GGTACTATCTAGTTTTGGTT+GGG - Chr4:7944276-7944295 MsG0480018640.01.T01:intron 35.0%
!!! TTAAGCGAGGTTTTAAATGG+AGG - Chr4:7943707-7943726 MsG0480018640.01.T01:CDS 35.0%
AACTGACAGGAAGCCAATAA+AGG - Chr4:7944921-7944940 MsG0480018640.01.T01:intron 40.0%
ACACACACACACACACAAAT+TGG - Chr4:7945343-7945362 MsG0480018640.01.T01:intron 40.0%
ACTCTGTGATCCAGGTAAAT+GGG - Chr4:7943007-7943026 MsG0480018640.01.T01:intron 40.0%
ACTGGATATGTCTTAGAAGC+AGG + Chr4:7943865-7943884 None:intergenic 40.0%
AGATGATCAAGGTTATGAGG+AGG - Chr4:7945880-7945899 MsG0480018640.01.T01:five_prime_UTR 40.0%
AGGAGGGGGAAATTATTAAC+GGG + Chr4:7944666-7944685 None:intergenic 40.0%
AGGCCTAAAAGGCTAAAACA+AGG - Chr4:7945144-7945163 MsG0480018640.01.T01:intron 40.0%
ATCGTCATCTGTTGTGATTC+TGG - Chr4:7944457-7944476 MsG0480018640.01.T01:five_prime_UTR 40.0%
ATCGTTCGTGCTTTAACTCA+AGG - Chr4:7942859-7942878 MsG0480018640.01.T01:CDS 40.0%
ATCTACGCGAATTAGGGTTA+GGG + Chr4:7942754-7942773 None:intergenic 40.0%
ATTTGTGAGAGGTGGTATCA+TGG - Chr4:7945983-7946002 MsG0480018640.01.T01:five_prime_UTR 40.0%
CCTTGATCATCTACCAACTT+TGG + Chr4:7945872-7945891 None:intergenic 40.0%
CTGGATATGTCTTAGAAGCA+GGG + Chr4:7943864-7943883 None:intergenic 40.0%
GAAACTTGAGGTTGTGTGAA+AGG - Chr4:7944581-7944600 MsG0480018640.01.T01:five_prime_UTR 40.0%
GATTTCAGTTCTCGTAGAGA+TGG - Chr4:7942835-7942854 MsG0480018640.01.T01:CDS 40.0%
GCCTAAAAGGCTAAAACAAG+GGG - Chr4:7945146-7945165 MsG0480018640.01.T01:intron 40.0%
GGCCTAAAAGGCTAAAACAA+GGG - Chr4:7945145-7945164 MsG0480018640.01.T01:intron 40.0%
GGTAGATGATCAAGGTTATG+AGG - Chr4:7945877-7945896 MsG0480018640.01.T01:five_prime_UTR 40.0%
GTGTGAGAGATACTAAACAC+AGG + Chr4:7945313-7945332 None:intergenic 40.0%
TATATATGCGGTACACCCAA+AGG - Chr4:7945053-7945072 MsG0480018640.01.T01:intron 40.0%
TATTGCCACACAGTGTGATA+AGG + Chr4:7944686-7944705 None:intergenic 40.0%
TCTTGAACTACCCATTTACC+TGG + Chr4:7943020-7943039 None:intergenic 40.0%
TGTGATTCTCAACAACGTCA+AGG + Chr4:7943745-7943764 None:intergenic 40.0%
TTGCTTCCACTATCTACAGT+GGG + Chr4:7944952-7944971 None:intergenic 40.0%
TTGGCTGTGATATTTGTGAG+AGG - Chr4:7945972-7945991 MsG0480018640.01.T01:five_prime_UTR 40.0%
TTGGGTGTACCGCATATATA+CGG + Chr4:7945053-7945072 None:intergenic 40.0%
TTTGCTTCCACTATCTACAG+TGG + Chr4:7944953-7944972 None:intergenic 40.0%
! ACACCTTCAATCAGAAGTGT+CGG + Chr4:7943505-7943524 None:intergenic 40.0%
! CAGCTGGTTTAGATATCTAG+CGG + Chr4:7945543-7945562 None:intergenic 40.0%
! CTCTCGGAATCAATTTTGCA+AGG - Chr4:7944147-7944166 MsG0480018640.01.T01:intron 40.0%
! GAGCTAGCTTAGTAATGCTT+GGG - Chr4:7945381-7945400 MsG0480018640.01.T01:intron 40.0%
! GGAATCAATTTTGCAAGGGA+TGG - Chr4:7944152-7944171 MsG0480018640.01.T01:intron 40.0%
! TGATTCATGGTTGCTTTCTG+TGG - Chr4:7944217-7944236 MsG0480018640.01.T01:intron 40.0%
! TTTATGCTCTCAGCTTTAGC+AGG + Chr4:7946028-7946047 None:intergenic 40.0%
! TTTTATGCACTCTGTGATCC+AGG - Chr4:7942999-7943018 MsG0480018640.01.T01:intron 40.0%
!! ACGGTAGTCATTTTCACCTT+TGG + Chr4:7945072-7945091 None:intergenic 40.0%
!! AGATAGTGGAAGCAAATCTC+GGG - Chr4:7944957-7944976 MsG0480018640.01.T01:intron 40.0%
!! CCAAAGTTGGTAGATGATCA+AGG - Chr4:7945869-7945888 MsG0480018640.01.T01:five_prime_UTR 40.0%
!! CGGTAGTCATTTTCACCTTT+GGG + Chr4:7945071-7945090 None:intergenic 40.0%
!! TTGATGGTTCCACTGATTCA+TGG - Chr4:7944844-7944863 MsG0480018640.01.T01:intron 40.0%
!!! GCTCTGTTATTGCCGTTTTA+AGG - Chr4:7944757-7944776 MsG0480018640.01.T01:intron 40.0%
!!! GTCTTCTTGCTTTTGGTGTT+AGG + Chr4:7945113-7945132 None:intergenic 40.0%
!!! TCCCCTTGTTTTAGCCTTTT+AGG + Chr4:7945150-7945169 None:intergenic 40.0%
!!! TCTTGCTTTTGGTGTTAGGT+GGG + Chr4:7945109-7945128 None:intergenic 40.0%
!!! TTCTTGCTTTTGGTGTTAGG+TGG + Chr4:7945110-7945129 None:intergenic 40.0%
!!! TTTTTTTTAGGCCCATGGCT+GGG - Chr4:7945242-7945261 MsG0480018640.01.T01:intron 40.0%
!!! TTTTTTTTTAGGCCCATGGC+TGG - Chr4:7945241-7945260 MsG0480018640.01.T01:intron 40.0%
AAGATCTCTTCAACGGTACG+AGG + Chr4:7942811-7942830 None:intergenic 45.0%
AAGGGATGGCATGAATCGTA+GGG - Chr4:7944166-7944185 MsG0480018640.01.T01:intron 45.0%
AGAGATACTAAACACAGGCC+CGG + Chr4:7945308-7945327 None:intergenic 45.0%
AGCATAGCGAAACCCTTTGT+GGG - Chr4:7945912-7945931 MsG0480018640.01.T01:five_prime_UTR 45.0%
CACTCTGTGATCCAGGTAAA+TGG - Chr4:7943006-7943025 MsG0480018640.01.T01:intron 45.0%
CTCGTCTTAACCGCAATGAA+AGG - Chr4:7944255-7944274 MsG0480018640.01.T01:intron 45.0%
GACTAAGCCATGTGAGTGAA+TGG + Chr4:7942669-7942688 None:intergenic 45.0%
GATCGATCCATTCACTCACA+TGG - Chr4:7942659-7942678 MsG0480018640.01.T01:CDS 45.0%
GATCTACGCGAATTAGGGTT+AGG + Chr4:7942755-7942774 None:intergenic 45.0%
GCTAGCTCCGAGTAAATAAC+AGG + Chr4:7945369-7945388 None:intergenic 45.0%
GCTGTGATATTTGTGAGAGG+TGG - Chr4:7945975-7945994 MsG0480018640.01.T01:five_prime_UTR 45.0%
GGAGGGGGAAATTATTAACG+GGG + Chr4:7944665-7944684 None:intergenic 45.0%
TTGCTGTGCACAGTGATTCA+TGG - Chr4:7944204-7944223 MsG0480018640.01.T01:intron 45.0%
! ACAGTGGGCTTGTCCTTTAT+TGG + Chr4:7944937-7944956 None:intergenic 45.0%
! CTTCTGATTGAAGGTGTGTC+AGG - Chr4:7943508-7943527 MsG0480018640.01.T01:intron 45.0%
! GCAAAATTGATTCCGAGAGC+TGG + Chr4:7944146-7944165 None:intergenic 45.0%
! GGAGCTAGCTTAGTAATGCT+TGG - Chr4:7945380-7945399 MsG0480018640.01.T01:intron 45.0%
!! CTGCTTTGTAACGGGCTTAT+AGG - Chr4:7944809-7944828 MsG0480018640.01.T01:intron 45.0%
!! GATAGTGGAAGCAAATCTCG+GGG - Chr4:7944958-7944977 MsG0480018640.01.T01:intron 45.0%
!!! CTTGCTTTTGGTGTTAGGTG+GGG + Chr4:7945108-7945127 None:intergenic 45.0%
!!! TTGCTTTTGGTGTTAGGTGG+GGG + Chr4:7945107-7945126 None:intergenic 45.0%
!!! TTTTTTTAGGCCCATGGCTG+GGG - Chr4:7945243-7945262 MsG0480018640.01.T01:intron 45.0%
!! AAAACAAAAAAAATAATTAA+TGG + Chr4:7942959-7942978 None:intergenic 5.0%
!! AAACAAAAAAAATAATTAAT+GGG + Chr4:7942958-7942977 None:intergenic 5.0%
!!! ATTTTAGTTTATAATTTTTT+TGG - Chr4:7943368-7943387 MsG0480018640.01.T01:intron 5.0%
AAGGGGACAGAAAATGGCTG+GGG - Chr4:7945163-7945182 MsG0480018640.01.T01:intron 50.0%
AATCACTGTGCACAGCAACC+AGG + Chr4:7944202-7944221 None:intergenic 50.0%
ACAAGGGGACAGAAAATGGC+TGG - Chr4:7945161-7945180 MsG0480018640.01.T01:intron 50.0%
ATCACTGTGCACAGCAACCA+GGG + Chr4:7944201-7944220 None:intergenic 50.0%
ATGGCATGAATCGTAGGGAC+TGG - Chr4:7944171-7944190 MsG0480018640.01.T01:intron 50.0%
CAAGGGATGGCATGAATCGT+AGG - Chr4:7944165-7944184 MsG0480018640.01.T01:intron 50.0%
CAAGGGGACAGAAAATGGCT+GGG - Chr4:7945162-7945181 MsG0480018640.01.T01:intron 50.0%
CACACAGTGTGATAAGGAGG+GGG + Chr4:7944680-7944699 None:intergenic 50.0%
CCACACAGTGTGATAAGGAG+GGG + Chr4:7944681-7944700 None:intergenic 50.0%
CCATCATGCAGCATCAAGAG+GGG - Chr4:7946061-7946080 MsG0480018640.01.T01:five_prime_UTR 50.0%
CCCATCATGCAGCATCAAGA+GGG - Chr4:7946060-7946079 MsG0480018640.01.T01:five_prime_UTR 50.0%
CCCTCTTGATGCTGCATGAT+GGG + Chr4:7946063-7946082 None:intergenic 50.0%
CGTTTCCTGCCATGAATCAG+TGG + Chr4:7944856-7944875 None:intergenic 50.0%
GACAAGCCCACTGTAGATAG+TGG - Chr4:7944943-7944962 MsG0480018640.01.T01:intron 50.0%
GAGCATAGCGAAACCCTTTG+TGG - Chr4:7945911-7945930 MsG0480018640.01.T01:five_prime_UTR 50.0%
GCAAACAGCTCAACAGAGCT+GGG + Chr4:7945273-7945292 None:intergenic 50.0%
GCCACACAGTGTGATAAGGA+GGG + Chr4:7944682-7944701 None:intergenic 50.0%
GTGGGGGTTCCTCATGTATA+CGG + Chr4:7945091-7945110 None:intergenic 50.0%
TCCCAGAAACCTCAGCACAA+GGG - Chr4:7944530-7944549 MsG0480018640.01.T01:five_prime_UTR 50.0%
TGCAAACAGCTCAACAGAGC+TGG + Chr4:7945274-7945293 None:intergenic 50.0%
TGCCACACAGTGTGATAAGG+AGG + Chr4:7944683-7944702 None:intergenic 50.0%
TGGAGGGCAGTAGTACTAGT+GGG - Chr4:7945208-7945227 MsG0480018640.01.T01:intron 50.0%
TGTCTTGGCCCATCAATCCA+AGG + Chr4:7944502-7944521 None:intergenic 50.0%
TTCCCAGAAACCTCAGCACA+AGG - Chr4:7944529-7944548 MsG0480018640.01.T01:five_prime_UTR 50.0%
TTGGAGGGCAGTAGTACTAG+TGG - Chr4:7945207-7945226 MsG0480018640.01.T01:intron 50.0%
! GCACCGACACTTCTGATTGA+AGG - Chr4:7943499-7943518 MsG0480018640.01.T01:intron 50.0%
!! ATAGGTTGGTGACCACGTTC+TGG + Chr4:7943834-7943853 None:intergenic 50.0%
!! CAGAAGTGTCGGTGCTACAA+AGG + Chr4:7943494-7943513 None:intergenic 50.0%
!! TAGGTTGGTGACCACGTTCT+GGG + Chr4:7943833-7943852 None:intergenic 50.0%
!! TGGTTCCACTGATTCATGGC+AGG - Chr4:7944848-7944867 MsG0480018640.01.T01:intron 50.0%
!!! TTTTTTAGGCCCATGGCTGG+GGG - Chr4:7945244-7945263 MsG0480018640.01.T01:intron 50.0%
ACAGAAAATGGCTGGGGCCT+GGG - Chr4:7945169-7945188 MsG0480018640.01.T01:intron 55.0%
CCCCTCCTTATCACACTGTG+TGG - Chr4:7944678-7944697 MsG0480018640.01.T01:intron 55.0%
CCCCTCTTGATGCTGCATGA+TGG + Chr4:7946064-7946083 None:intergenic 55.0%
GAAACCCTTTGTGGGAGCTG+CGG - Chr4:7945920-7945939 MsG0480018640.01.T01:five_prime_UTR 55.0%
GCCCATCATGCAGCATCAAG+AGG - Chr4:7946059-7946078 MsG0480018640.01.T01:five_prime_UTR 55.0%
GCCCTTGTGCTGAGGTTTCT+GGG + Chr4:7944534-7944553 None:intergenic 55.0%
TGTCAGTGTCGTGTCCCTGT+AGG + Chr4:7943548-7943567 None:intergenic 55.0%
TTGTGTCGCATCCCAGAACG+TGG - Chr4:7943819-7943838 MsG0480018640.01.T01:CDS 55.0%
! TTGATTCCGAGAGCTGGCTC+TGG + Chr4:7944140-7944159 None:intergenic 55.0%
AGAAAATGGCTGGGGCCTGG+GGG - Chr4:7945171-7945190 MsG0480018640.01.T01:intron 60.0%
CAAATCTCGGGGCAGCACCA+AGG - Chr4:7944969-7944988 MsG0480018640.01.T01:intron 60.0%
CAGAAAATGGCTGGGGCCTG+GGG - Chr4:7945170-7945189 MsG0480018640.01.T01:intron 60.0%
CATGCAGCATCAAGAGGGGC+AGG - Chr4:7946065-7946084 MsG0480018640.01.T01:five_prime_UTR 60.0%
GACAGAAAATGGCTGGGGCC+TGG - Chr4:7945168-7945187 MsG0480018640.01.T01:intron 60.0%
GAGAAAGGGCCCTTGTGCTG+AGG + Chr4:7944542-7944561 None:intergenic 60.0%
GAGCTGTTTGCACCCCCTCA+GGG - Chr4:7945282-7945301 MsG0480018640.01.T01:intron 60.0%
GAGCTTCCAGAGCCAGCTCT+CGG - Chr4:7944131-7944150 MsG0480018640.01.T01:intron 60.0%
GGAGGTGACTCTTCCTGCTG+AGG - Chr4:7944097-7944116 MsG0480018640.01.T01:intron 60.0%
GGCCCTTGTGCTGAGGTTTC+TGG + Chr4:7944535-7944554 None:intergenic 60.0%
TCAGGCGGAACTTCCTCAGC+AGG + Chr4:7944113-7944132 None:intergenic 60.0%
TGAGCTGTTTGCACCCCCTC+AGG - Chr4:7945281-7945300 MsG0480018640.01.T01:intron 60.0%
!! AGAGCTGGCTCTGGAAGCTC+AGG + Chr4:7944131-7944150 None:intergenic 60.0%
!! TCGTAGGGACTGGCTTTCCC+TGG - Chr4:7944181-7944200 MsG0480018640.01.T01:intron 60.0%
AAACACAGGCCCGGCCCTGA+GGG + Chr4:7945299-7945318 None:intergenic 65.0%
ACCCTTTGTGGGAGCTGCGG+CGG - Chr4:7945923-7945942 MsG0480018640.01.T01:five_prime_UTR 65.0%
TAAACACAGGCCCGGCCCTG+AGG + Chr4:7945300-7945319 None:intergenic 65.0%
TCCGCCGCAGCTCCCACAAA+GGG + Chr4:7945927-7945946 None:intergenic 65.0%
TGTTTGCACCCCCTCAGGGC+CGG - Chr4:7945286-7945305 MsG0480018640.01.T01:intron 65.0%
TTCCGCCGCAGCTCCCACAA+AGG + Chr4:7945928-7945947 None:intergenic 65.0%
TTTAGGCCCATGGCTGGGGG+AGG - Chr4:7945247-7945266 MsG0480018640.01.T01:intron 65.0%
!! GCTGGCTCTGGAAGCTCAGG+CGG + Chr4:7944128-7944147 None:intergenic 65.0%
AACACAGGCCCGGCCCTGAG+GGG + Chr4:7945298-7945317 None:intergenic 70.0%
GTTTGCACCCCCTCAGGGCC+GGG - Chr4:7945287-7945306 MsG0480018640.01.T01:intron 70.0%
ACACAGGCCCGGCCCTGAGG+GGG + Chr4:7945297-7945316 None:intergenic 75.0%
AGCTGGGCCTCCCCCAGCCA+TGG + Chr4:7945257-7945276 None:intergenic 75.0%
GCTGGGCCTCCCCCAGCCAT+GGG + Chr4:7945256-7945275 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 7942600 7946093 7942600 ID=MsG0480018640.01;Name=MsG0480018640.01
Chr4 mRNA 7942600 7946093 7942600 ID=MsG0480018640.01.T01;Parent=MsG0480018640.01;Name=MsG0480018640.01.T01;_AED=0.38;_eAED=0.43;_QI=580|0.5|0.4|1|0.5|0.4|5|0|161
Chr4 exon 7942600 7942921 7942600 ID=MsG0480018640.01.T01:exon:2611;Parent=MsG0480018640.01.T01
Chr4 exon 7943683 7943862 7943683 ID=MsG0480018640.01.T01:exon:2610;Parent=MsG0480018640.01.T01
Chr4 exon 7944390 7944639 7944390 ID=MsG0480018640.01.T01:exon:2609;Parent=MsG0480018640.01.T01
Chr4 exon 7945673 7945705 7945673 ID=MsG0480018640.01.T01:exon:2608;Parent=MsG0480018640.01.T01
Chr4 exon 7945813 7946093 7945813 ID=MsG0480018640.01.T01:exon:2607;Parent=MsG0480018640.01.T01
Chr4 five_prime_UTR 7945813 7946093 7945813 ID=MsG0480018640.01.T01:five_prime_utr;Parent=MsG0480018640.01.T01
Chr4 five_prime_UTR 7945673 7945705 7945673 ID=MsG0480018640.01.T01:five_prime_utr;Parent=MsG0480018640.01.T01
Chr4 five_prime_UTR 7944390 7944639 7944390 ID=MsG0480018640.01.T01:five_prime_utr;Parent=MsG0480018640.01.T01
Chr4 five_prime_UTR 7943847 7943862 7943847 ID=MsG0480018640.01.T01:five_prime_utr;Parent=MsG0480018640.01.T01
Chr4 CDS 7943683 7943846 7943683 ID=MsG0480018640.01.T01:cds;Parent=MsG0480018640.01.T01
Chr4 CDS 7942600 7942921 7942600 ID=MsG0480018640.01.T01:cds;Parent=MsG0480018640.01.T01
Gene Sequence

>MsG0480018640.01.T01

ATGGTTCCACTGATTCATGGCAGGAAACGCTTATTTAGCTTGATCAATGAACTTCCAACTGTGTTTGAAGTTGTAACTGACAGGAAGCCAATAAAGGACAAGCCCACTGTAGATAGTGGAAGCAAATCTCGGGGCAGCACCAAGGTTAGTGTAATTGTCATTGTGTTTCGTAGGGTGCTAAATGTTGTCATGTTACTACTGTCTAATACATGTTTGTTAATTTATTTGAAGAGATCAAGTGATGGACAAGTTAAAAGCAACCCAAAGTTGGTAGATGATCAAGGTTATGAGGAGGAAGAAGACGAGCATAGCGAAACCCTTTGTGGGAGCTGCGGCGGAAACTACAACGCAGATGAATTTTGGATTGGCTGTGATATTTGTGAGAGGTGGTATCATGGAAAATGTGTGAAGATTACTCCTGCTAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATCAAGAGGGGCAGGCCCTAA

Protein sequence

>MsG0480018640.01.T01

MVPLIHGRKRLFSLINELPTVFEVVTDRKPIKDKPTVDSGSKSRGSTKVSVIVIVFRRVLNVVMLLLSNTCLLIYLKRSSDGQVKSNPKLVDDQGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSIKRGRP*