AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025321.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025321.01.T01 MTR_5g026400 88.798 366 12 2 1 337 1 366 0.0 656
MsG0580025321.01.T01 MTR_5g026400 87.216 352 11 1 20 337 18 369 0.0 622
MsG0580025321.01.T01 MTR_5g026400 88.184 347 12 2 20 337 18 364 0.0 618
MsG0580025321.01.T01 MTR_5g026400 86.688 308 12 2 1 279 1 308 0.0 530
MsG0580025321.01.T01 MTR_5g026400 85.813 289 12 2 20 279 18 306 7.76e-177 492
MsG0580025321.01.T01 MTR_3g117350 44.327 379 159 8 1 337 1 369 3.35e-88 270
MsG0580025321.01.T01 MTR_4g071540 42.670 382 162 9 1 337 1 370 1.85e-80 249
MsG0580025321.01.T01 MTR_8g087990 36.982 338 181 6 1 335 1 309 4.08e-71 224
MsG0580025321.01.T01 MTR_8g087990 34.332 367 185 7 1 335 1 343 1.06e-66 213
MsG0580025321.01.T01 MTR_4g071540 41.176 323 133 9 1 278 1 311 2.87e-52 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025321.01.T01 AT4G34660 42.553 376 167 7 1 337 1 366 3.87e-89 272
MsG0580025321.01.T01 AT4G34660 40.691 376 151 8 1 337 1 343 2.37e-80 248
MsG0580025321.01.T01 AT4G34660 39.071 366 143 3 1 337 1 315 3.81e-77 239
MsG0580025321.01.T01 AT4G18060 36.088 363 179 6 1 331 1 342 3.72e-74 233
MsG0580025321.01.T01 AT1G31440 44.482 299 125 5 1 260 1 297 1.17e-72 232
MsG0580025321.01.T01 AT1G31440 57.009 107 42 1 235 337 327 433 1.77e-33 128
MsG0580025321.01.T01 AT4G39020 45.055 91 49 1 247 337 78 167 8.23e-19 82.8

Find 75 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATTAACTTTCTCATTTGC+AGG 0.288088 5:+16930310 None:intergenic
GAGACTTTGCTTGGGATCTT+AGG 0.291927 5:-16932041 MsG0580025321.01.T01:CDS
GGTTGATTATGTTCCTCTTT+TGG 0.303218 5:+16930331 None:intergenic
CGGTAACTCATACGATATAT+TGG 0.313275 5:-16932075 MsG0580025321.01.T01:CDS
GCTAAGGACTGTTGTAAGTA+TGG 0.317953 5:-16932155 MsG0580025321.01.T01:CDS
GCATAACTTTGATGTTATTC+CGG 0.330937 5:+16929254 None:intergenic
GCTTGGGATCTTAGGTGATC+AGG 0.383065 5:-16932033 MsG0580025321.01.T01:intron
TGTTTATAACGAATGCCATT+TGG 0.388959 5:+16930289 None:intergenic
GATCACTACCTGTTGTTGTT+TGG 0.414946 5:+16933417 None:intergenic
GCAAGTGCTTCTCTTCAATT+CGG 0.418266 5:-16932095 MsG0580025321.01.T01:CDS
GGAGAATTCAATGGCAATGC+TGG 0.418558 5:-16929332 MsG0580025321.01.T01:CDS
ATCTTAGATATCTTCTCATC+AGG 0.426168 5:-16931657 MsG0580025321.01.T01:intron
TATAAACATAACACCCAAAT+GGG 0.436203 5:-16930274 MsG0580025321.01.T01:CDS
CGATTATGTTGTAGTCCGTC+AGG 0.438244 5:-16929689 MsG0580025321.01.T01:intron
TTCTGCATTCTGAAGCCTCA+TGG 0.443561 5:+16931574 None:intergenic
TTATAAACATAACACCCAAA+TGG 0.448386 5:-16930275 MsG0580025321.01.T01:CDS
CATATCGTTCGGGGCGTTGA+AGG 0.452090 5:-16932314 MsG0580025321.01.T01:CDS
TTCTGTTAGTTCCAAGCAGA+TGG 0.454303 5:-16932285 MsG0580025321.01.T01:CDS
CCTTCAGCTTGAGCATCAAA+TGG 0.458512 5:+16929733 None:intergenic
AATGAGAAAGTTAATCCAAA+TGG 0.467279 5:-16930304 MsG0580025321.01.T01:CDS
ATCATTTCCACTGCCAAAAG+AGG 0.468115 5:-16930344 MsG0580025321.01.T01:CDS
CAGTCTATACTTAGACAGTT+GGG 0.468435 5:-16932534 MsG0580025321.01.T01:CDS
ATACCATTGTAGAAAGGCTC+TGG 0.470481 5:+16931453 None:intergenic
AGTTCCAAGCAGATGGAGAT+AGG 0.472353 5:-16932278 MsG0580025321.01.T01:intron
GGAAGCAAGCTAGTAGATTG+AGG 0.473119 5:-16933450 MsG0580025321.01.T01:CDS
AATGAAAGGGAGACTTTGCT+TGG 0.475575 5:-16932050 MsG0580025321.01.T01:CDS
ACAAGTTGCCAAACAACAAC+AGG 0.480217 5:-16933425 MsG0580025321.01.T01:intron
TATTCCGGTATCTTGTTCGC+TGG 0.489472 5:+16929269 None:intergenic
GCAGTCTATACTTAGACAGT+TGG 0.490454 5:-16932535 MsG0580025321.01.T01:intron
CCATTTGATGCTCAAGCTGA+AGG 0.493578 5:-16929733 MsG0580025321.01.T01:CDS
GAGGCGTCGATCAAAGTTGA+GGG 0.496376 5:-16931621 MsG0580025321.01.T01:CDS
AATTTCCAGGTTGCTGCCAA+TGG 0.498806 5:-16929365 MsG0580025321.01.T01:intron
GTCACCTATCTCCATCTGCT+TGG 0.502296 5:+16932274 None:intergenic
TGAGCGGTTCATTGCTAAGT+TGG 0.503839 5:+16932511 None:intergenic
ACGATATATTGGAAAATGAA+AGG 0.504543 5:-16932064 MsG0580025321.01.T01:CDS
TTAGCTATACCATTGTAGAA+AGG 0.507899 5:+16931447 None:intergenic
ATGAAAGGGAGACTTTGCTT+GGG 0.515856 5:-16932049 MsG0580025321.01.T01:CDS
CGATATATTGGAAAATGAAA+GGG 0.517703 5:-16932063 MsG0580025321.01.T01:CDS
AAATCTGCCCTTGTGGCACT+TGG 0.518166 5:-16931533 MsG0580025321.01.T01:CDS
GAAGCAAGCTAGTAGATTGA+GGG 0.520089 5:-16933449 MsG0580025321.01.T01:CDS
TCCAGGTTGCTGCCAATGGA+TGG 0.529779 5:-16929361 MsG0580025321.01.T01:intron
ACTTAGCAATGAACCGCTCA+TGG 0.537092 5:-16932508 MsG0580025321.01.T01:CDS
TTGAAGAGAAGCACTTGCAA+GGG 0.540806 5:+16932100 None:intergenic
CTCTGCTTATGTACAGAGAC+AGG 0.541764 5:-16929300 MsG0580025321.01.T01:CDS
TGCTGCTATGTCGTCAGTTG+AGG 0.543649 5:-16931498 MsG0580025321.01.T01:CDS
CTAAGGACTGTTGTAAGTAT+GGG 0.544371 5:-16932154 MsG0580025321.01.T01:CDS
GTATACTTCAGTGAGGAAGT+TGG 0.546550 5:-16932177 MsG0580025321.01.T01:intron
ATTGAAGAGAAGCACTTGCA+AGG 0.556652 5:+16932099 None:intergenic
TTCAGTGAGGAAGTTGGCTA+AGG 0.558875 5:-16932171 MsG0580025321.01.T01:intron
TTCTCCTTCAGACCATCCAT+TGG 0.561878 5:+16929349 None:intergenic
CATTTGATGCTCAAGCTGAA+GGG 0.565005 5:-16929732 MsG0580025321.01.T01:CDS
TGAGGCGTCGATCAAAGTTG+AGG 0.570936 5:-16931622 MsG0580025321.01.T01:CDS
CTAGAATAACAAGGGCATGC+CGG 0.575931 5:+16930584 None:intergenic
CTTCTCTACCAAGTGCCACA+AGG 0.578531 5:+16931525 None:intergenic
TTTCAGCGGCATATCGTTCG+GGG 0.580469 5:-16932323 MsG0580025321.01.T01:CDS
TGGTCTGAAGGAGAATTCAA+TGG 0.582228 5:-16929341 MsG0580025321.01.T01:CDS
AATTCAATGGCAATGCTGGA+TGG 0.583292 5:-16929328 MsG0580025321.01.T01:CDS
ATTTGATGCTCAAGCTGAAG+GGG 0.584498 5:-16929731 MsG0580025321.01.T01:CDS
CACTTCTACAAAGACTGCTA+AGG 0.584795 5:-16932439 MsG0580025321.01.T01:intron
AGTACCAGCGAACAAGATAC+CGG 0.589399 5:-16929273 MsG0580025321.01.T01:CDS
GCTGCCAATGGATGGTCTGA+AGG 0.596789 5:-16929353 MsG0580025321.01.T01:CDS
TCTAGATAAACTACATGCTG+AGG 0.597051 5:-16930566 MsG0580025321.01.T01:intron
TCTCCAGAGCCTTTCTACAA+TGG 0.606321 5:-16931456 MsG0580025321.01.T01:intron
TTCTCTACCAAGTGCCACAA+GGG 0.615566 5:+16931526 None:intergenic
CTGTCTCTGTACATAAGCAG+AGG 0.628802 5:+16929301 None:intergenic
AGAGCATAAATCTGCCCTTG+TGG 0.636988 5:-16931540 MsG0580025321.01.T01:CDS
TGAAGAGAAGCACTTGCAAG+GGG 0.649136 5:+16932101 None:intergenic
TCAGATTCATCAGCCATGAG+CGG 0.654677 5:+16932495 None:intergenic
GTAGTTTATCTAGAATAACA+AGG 0.660690 5:+16930575 None:intergenic
TGTCTCTGTACATAAGCAGA+GGG 0.668894 5:+16929302 None:intergenic
GGAAATGATGTAGAGTCTTG+TGG 0.677018 5:+16930358 None:intergenic
TAGTTTATCTAGAATAACAA+GGG 0.682515 5:+16930576 None:intergenic
TTTCTGCAGAGAGTTCCATG+AGG 0.703430 5:-16931589 MsG0580025321.01.T01:CDS
GAAGAGAAGCACTTGCAAGG+GGG 0.737031 5:+16932102 None:intergenic
GGGACTGAGAATGACAACCA+AGG 0.745093 5:-16932134 MsG0580025321.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATTAACAAAGTAAAA+TGG + Chr5:16931578-16931597 None:intergenic 10.0%
!! AATATCATTATTAATATTTG+CGG - Chr5:16933264-16933283 MsG0580025321.01.T01:intron 10.0%
!!! AAATTCATAATTTTTTAATG+AGG - Chr5:16931959-16931978 MsG0580025321.01.T01:intron 10.0%
!!! AATAATTTTTTTTTTGTTTG+GGG + Chr5:16932071-16932090 None:intergenic 10.0%
!!! AATTAAATCAAAATCAATTT+TGG - Chr5:16929699-16929718 MsG0580025321.01.T01:CDS 10.0%
!!! ATTTTATTGCTTATATAAAT+TGG + Chr5:16932736-16932755 None:intergenic 10.0%
!! TATCTAATTAAATGTTTGTT+TGG - Chr5:16931982-16932001 MsG0580025321.01.T01:intron 15.0%
!!! ATAATTTTTTTTTTGTTTGG+GGG + Chr5:16932070-16932089 None:intergenic 15.0%
!!! GATTTTGATTTAATTGATTT+TGG + Chr5:16929694-16929713 None:intergenic 15.0%
!!! TGATAACATCATATATTTTA+CGG + Chr5:16930803-16930822 None:intergenic 15.0%
!! AGATCAACATTAAAAAGAAA+TGG + Chr5:16932662-16932681 None:intergenic 20.0%
!! CTTAATAACTAACTGATAAA+TGG + Chr5:16930336-16930355 None:intergenic 20.0%
!! TCATAAAATAAGACAAATCT+TGG - Chr5:16932850-16932869 MsG0580025321.01.T01:intron 20.0%
!! TTCCAATTTGAAAGAATTAT+TGG + Chr5:16932206-16932225 None:intergenic 20.0%
!! TTGAAGATGTAAATATTTGT+TGG - Chr5:16931668-16931687 MsG0580025321.01.T01:intron 20.0%
!!! TAGTTTATCTAGAATAACAA+GGG + Chr5:16932158-16932177 None:intergenic 20.0%
!!! TGATTCTATAAAGTTGATTT+GGG + Chr5:16929972-16929991 None:intergenic 20.0%
!!! TTGAACTTCTTAAGTAATTT+TGG - Chr5:16933098-16933117 MsG0580025321.01.T01:intron 20.0%
!!! TTGATTCTATAAAGTTGATT+TGG + Chr5:16929973-16929992 None:intergenic 20.0%
!!! TTGCATTTTTATTTTCCTTT+TGG - Chr5:16933337-16933356 MsG0580025321.01.T01:intron 20.0%
! AAACAAGCTTATTGTATGTT+TGG - Chr5:16929431-16929450 MsG0580025321.01.T01:intron 25.0%
! AAATCAACAGTAACTCTATT+TGG + Chr5:16933176-16933195 None:intergenic 25.0%
! AATGAGAAAGTTAATCCAAA+TGG - Chr5:16932427-16932446 MsG0580025321.01.T01:intron 25.0%
! ACAAAACATCAATCAATTAC+TGG + Chr5:16930531-16930550 None:intergenic 25.0%
! ACGATATATTGGAAAATGAA+AGG - Chr5:16930667-16930686 MsG0580025321.01.T01:intron 25.0%
! ATATGGTTGTAATGTAATGT+AGG + Chr5:16932543-16932562 None:intergenic 25.0%
! ATGTAGATAAAATATTGCAC+TGG + Chr5:16932930-16932949 None:intergenic 25.0%
! ATGTGAAAGTCATTTATGTT+CGG + Chr5:16929656-16929675 None:intergenic 25.0%
! CAAAGCTAAATCATTTGAAT+AGG + Chr5:16932596-16932615 None:intergenic 25.0%
! CAATTTGAAAGAATTATTGG+TGG + Chr5:16932203-16932222 None:intergenic 25.0%
! CACCAATAATTCTTTCAAAT+TGG - Chr5:16932201-16932220 MsG0580025321.01.T01:intron 25.0%
! CGATATATTGGAAAATGAAA+GGG - Chr5:16930668-16930687 MsG0580025321.01.T01:intron 25.0%
! GCATAAACAAAACTAATGAT+AGG + Chr5:16930501-16930520 None:intergenic 25.0%
! TATAAACATAACACCCAAAT+GGG - Chr5:16932457-16932476 MsG0580025321.01.T01:CDS 25.0%
! TTACTTCATGATTGAACTTA+TGG - Chr5:16930049-16930068 MsG0580025321.01.T01:intron 25.0%
! TTATAAACATAACACCCAAA+TGG - Chr5:16932456-16932475 MsG0580025321.01.T01:CDS 25.0%
! TTATTAATATTTGCGGAAGT+TGG - Chr5:16933271-16933290 MsG0580025321.01.T01:intron 25.0%
!! ATTTTGCACTAGTACTATTT+AGG - Chr5:16929358-16929377 MsG0580025321.01.T01:CDS 25.0%
!! CTATTCAAATGATTTAGCTT+TGG - Chr5:16932594-16932613 MsG0580025321.01.T01:intron 25.0%
!! GTAGTTTATCTAGAATAACA+AGG + Chr5:16932159-16932178 None:intergenic 25.0%
!!! AGAATTGATTTTGACATGTT+TGG - Chr5:16929499-16929518 MsG0580025321.01.T01:intron 25.0%
!!! CATTTTTATTTTCCTTTTGG+TGG - Chr5:16933340-16933359 MsG0580025321.01.T01:intron 25.0%
!!! TTAGTTTTGTTTATGCTTCA+AGG - Chr5:16930505-16930524 MsG0580025321.01.T01:intron 25.0%
AAAAACACTAAGCAAGTGTT+CGG + Chr5:16929736-16929755 None:intergenic 30.0%
AAGCTAAAAATCAACTCTAG+AGG + Chr5:16929595-16929614 None:intergenic 30.0%
AGGCTAAAAATCAATTCTAG+AGG + Chr5:16929875-16929894 None:intergenic 30.0%
ATCTTAGATATCTTCTCATC+AGG - Chr5:16931074-16931093 MsG0580025321.01.T01:intron 30.0%
ATCTTCAAAGAAATACCTGA+CGG + Chr5:16933060-16933079 None:intergenic 30.0%
CAAAACTAATGATAGGCAAA+AGG + Chr5:16930494-16930513 None:intergenic 30.0%
CTTGTATCTATTGTACATGT+TGG - Chr5:16932242-16932261 MsG0580025321.01.T01:intron 30.0%
GTACAATAGATACAAGAACA+AGG + Chr5:16932238-16932257 None:intergenic 30.0%
TCTCTTCTTGAATCTTCATT+AGG + Chr5:16931737-16931756 None:intergenic 30.0%
TGAAAAATATTGTGAGACCA+TGG + Chr5:16931933-16931952 None:intergenic 30.0%
TGTTTATAACGAATGCCATT+TGG + Chr5:16932445-16932464 None:intergenic 30.0%
TTAGCTATACCATTGTAGAA+AGG + Chr5:16931287-16931306 None:intergenic 30.0%
TTTGCCTCTTCAAAAAAAAG+TGG + Chr5:16929459-16929478 None:intergenic 30.0%
! AAAAAAGTATGTGCCCATTT+GGG + Chr5:16932473-16932492 None:intergenic 30.0%
! CAATTTTGTCTCTTCCAAAA+TGG + Chr5:16929764-16929783 None:intergenic 30.0%
! CTATCTTGTGGCTATAATTT+TGG - Chr5:16930876-16930895 MsG0580025321.01.T01:intron 30.0%
! TGATCAATTTTATGTAGCCA+TGG - Chr5:16931913-16931932 MsG0580025321.01.T01:intron 30.0%
!! CATTTTGGAAGAGACAAAAT+TGG - Chr5:16929762-16929781 MsG0580025321.01.T01:intron 30.0%
!! TAAGTTTAGAGAGCTTTGTT+TGG - Chr5:16930352-16930371 MsG0580025321.01.T01:CDS 30.0%
!! TTGTTTTGTATACTTCAGTG+AGG - Chr5:16930547-16930566 MsG0580025321.01.T01:intron 30.0%
!! TTTGTTTTCTTGTTTGTCAC+TGG - Chr5:16931700-16931719 MsG0580025321.01.T01:intron 30.0%
!!! AACACTTGCTTAGTGTTTTT+TGG - Chr5:16929736-16929755 MsG0580025321.01.T01:CDS 30.0%
!!! ATTTTTTTTTTGTTTGGGGG+AGG + Chr5:16932067-16932086 None:intergenic 30.0%
!!! CTAGAGTTGATTTTTAGCTT+TGG - Chr5:16929595-16929614 MsG0580025321.01.T01:intron 30.0%
!!! TTCTTTGAAGATTTTCGAGT+CGG - Chr5:16933068-16933087 MsG0580025321.01.T01:intron 30.0%
!!! TTTTTTTTTTGTTTGGGGGA+GGG + Chr5:16932066-16932085 None:intergenic 30.0%
AAACTTCGTCAAGAAGTAGA+AGG - Chr5:16930991-16931010 MsG0580025321.01.T01:intron 35.0%
AAAGTCAAATCAGCAACCAA+TGG + Chr5:16931549-16931568 None:intergenic 35.0%
AAATCTTCACGCTAAATGCA+GGG - Chr5:16931840-16931859 MsG0580025321.01.T01:intron 35.0%
AAATGCTGTAAACGTCACAT+TGG + Chr5:16930390-16930409 None:intergenic 35.0%
AAATGGATGTATGACCTACA+AGG + Chr5:16932984-16933003 None:intergenic 35.0%
AAGTCAAATCAGCAACCAAT+GGG + Chr5:16931548-16931567 None:intergenic 35.0%
AGAGGCAAAATTGATCTTAG+AGG - Chr5:16929470-16929489 MsG0580025321.01.T01:intron 35.0%
CAGTCTATACTTAGACAGTT+GGG - Chr5:16930197-16930216 MsG0580025321.01.T01:intron 35.0%
CATGATTGAACTTATGGTGT+CGG - Chr5:16930055-16930074 MsG0580025321.01.T01:intron 35.0%
CGGTAACTCATACGATATAT+TGG - Chr5:16930656-16930675 MsG0580025321.01.T01:intron 35.0%
CTAAGGACTGTTGTAAGTAT+GGG - Chr5:16930577-16930596 MsG0580025321.01.T01:CDS 35.0%
GATAGCCAGTAAATCAGATT+AGG + Chr5:16930861-16930880 None:intergenic 35.0%
GGAAGAGACAAAATTGGTTA+TGG - Chr5:16929768-16929787 MsG0580025321.01.T01:intron 35.0%
GGATTAACTTTCTCATTTGC+AGG + Chr5:16932424-16932443 None:intergenic 35.0%
GGGTGAATGTTATTGTTGAT+TGG + Chr5:16930960-16930979 None:intergenic 35.0%
GTAGTAATTTACTGCCACAA+TGG - Chr5:16931018-16931037 MsG0580025321.01.T01:intron 35.0%
GTGAACAATTCACAAGTCTA+AGG + Chr5:16930089-16930108 None:intergenic 35.0%
TCAACAGTAACTCTATTTGG+TGG + Chr5:16933173-16933192 None:intergenic 35.0%
TCTAGATAAACTACATGCTG+AGG - Chr5:16932165-16932184 MsG0580025321.01.T01:CDS 35.0%
TTGTAACCTGTACCTTTCAT+CGG - Chr5:16932310-16932329 MsG0580025321.01.T01:CDS 35.0%
TTGTGCCTAATCTGATTTAC+TGG - Chr5:16930853-16930872 MsG0580025321.01.T01:intron 35.0%
! AGGTGATCAGGTAATCTTTT+GGG - Chr5:16930710-16930729 MsG0580025321.01.T01:intron 35.0%
! CAAAAAAGTATGTGCCCATT+TGG + Chr5:16932474-16932493 None:intergenic 35.0%
! CAGGTAGTGATCATTTTACA+TGG - Chr5:16929325-16929344 MsG0580025321.01.T01:CDS 35.0%
! GACAAATCTTGGTGCAAAAA+AGG - Chr5:16932861-16932880 MsG0580025321.01.T01:intron 35.0%
! GGTTGATTATGTTCCTCTTT+TGG + Chr5:16932403-16932422 None:intergenic 35.0%
! TAGGTGATCAGGTAATCTTT+TGG - Chr5:16930709-16930728 MsG0580025321.01.T01:intron 35.0%
! TCATGTGAAAGTGAGTTGAA+TGG + Chr5:16929627-16929646 None:intergenic 35.0%
! TGAGTTGAACAATAAAGTCG+AGG + Chr5:16929895-16929914 None:intergenic 35.0%
! TGGTTCTGCGTTGATAAAAA+TGG + Chr5:16930008-16930027 None:intergenic 35.0%
!!! AAGATTTTCGAGTCGGTATA+TGG - Chr5:16933075-16933094 MsG0580025321.01.T01:intron 35.0%
!!! AGTGTTTTTTGGTGCCATTT+TGG - Chr5:16929747-16929766 MsG0580025321.01.T01:intron 35.0%
!!! GGTTCCACTTTTTTTTGAAG+AGG - Chr5:16929452-16929471 MsG0580025321.01.T01:intron 35.0%
!!! TGAGTGGAGTTTTTTACCTT+TGG - Chr5:16931423-16931442 MsG0580025321.01.T01:intron 35.0%
AACAGTCAACTGCAGGAATA+TGG + Chr5:16932560-16932579 None:intergenic 40.0%
AATGAAAGGGAGACTTTGCT+TGG - Chr5:16930681-16930700 MsG0580025321.01.T01:intron 40.0%
AATTCAATGGCAATGCTGGA+TGG - Chr5:16933403-16933422 MsG0580025321.01.T01:intron 40.0%
ACAAGTTGCCAAACAACAAC+AGG - Chr5:16929306-16929325 MsG0580025321.01.T01:CDS 40.0%
ACGAAGTTTGTCGTAGTTGT+GGG + Chr5:16930980-16930999 None:intergenic 40.0%
AGTCAAATCAGCAACCAATG+GGG + Chr5:16931547-16931566 None:intergenic 40.0%
ATACCATTGTAGAAAGGCTC+TGG + Chr5:16931281-16931300 None:intergenic 40.0%
ATCATTTCCACTGCCAAAAG+AGG - Chr5:16932387-16932406 MsG0580025321.01.T01:intron 40.0%
ATGAAAGGGAGACTTTGCTT+GGG - Chr5:16930682-16930701 MsG0580025321.01.T01:intron 40.0%
ATTTGATGCTCAAGCTGAAG+GGG - Chr5:16933000-16933019 MsG0580025321.01.T01:intron 40.0%
CACAGTCAATCTGTCCATTA+GGG - Chr5:16931792-16931811 MsG0580025321.01.T01:intron 40.0%
CACTTCTACAAAGACTGCTA+AGG - Chr5:16930292-16930311 MsG0580025321.01.T01:CDS 40.0%
CATTTGATGCTCAAGCTGAA+GGG - Chr5:16932999-16933018 MsG0580025321.01.T01:intron 40.0%
CCAATAGGTGTAACTCGATA+GGG - Chr5:16931457-16931476 MsG0580025321.01.T01:CDS 40.0%
CCTATCGAGTTACACCTATT+GGG + Chr5:16931459-16931478 None:intergenic 40.0%
CTGGAAATTCAACCACCAAA+AGG + Chr5:16933355-16933374 None:intergenic 40.0%
GAAATCTTCACGCTAAATGC+AGG - Chr5:16931839-16931858 MsG0580025321.01.T01:intron 40.0%
GAAGCAAGCTAGTAGATTGA+GGG - Chr5:16929282-16929301 MsG0580025321.01.T01:CDS 40.0%
GCAAGTGCTTCTCTTCAATT+CGG - Chr5:16930636-16930655 MsG0580025321.01.T01:intron 40.0%
GCAGTCTATACTTAGACAGT+TGG - Chr5:16930196-16930215 MsG0580025321.01.T01:intron 40.0%
GCTAAGGACTGTTGTAAGTA+TGG - Chr5:16930576-16930595 MsG0580025321.01.T01:CDS 40.0%
GGAAATGATGTAGAGTCTTG+TGG + Chr5:16932376-16932395 None:intergenic 40.0%
GTATACTTCAGTGAGGAAGT+TGG - Chr5:16930554-16930573 MsG0580025321.01.T01:intron 40.0%
TACCTTTCATCGGATGTTCT+TGG - Chr5:16932320-16932339 MsG0580025321.01.T01:CDS 40.0%
TGAACCACGATTAACCTCAT+AGG + Chr5:16931397-16931416 None:intergenic 40.0%
TGGTCTGAAGGAGAATTCAA+TGG - Chr5:16933390-16933409 MsG0580025321.01.T01:intron 40.0%
TGTCTCTGTACATAAGCAGA+GGG + Chr5:16933432-16933451 None:intergenic 40.0%
TGTGGCAGTAAATTACTACC+TGG + Chr5:16931017-16931036 None:intergenic 40.0%
TTCTGTTAGTTCCAAGCAGA+TGG - Chr5:16930446-16930465 MsG0580025321.01.T01:intron 40.0%
TTCTTCGATACTCTTCAGTG+TGG - Chr5:16930737-16930756 MsG0580025321.01.T01:intron 40.0%
! ATCCAGCTACCTCTTTTACA+TGG - Chr5:16932768-16932787 MsG0580025321.01.T01:intron 40.0%
! ATTTTCAGCGGCATATCGTT+CGG - Chr5:16930406-16930425 MsG0580025321.01.T01:intron 40.0%
! CTGATTTACTGGCTATCTTG+TGG - Chr5:16930864-16930883 MsG0580025321.01.T01:intron 40.0%
! GACGTTTACAGCATTTTCAG+CGG - Chr5:16930394-16930413 MsG0580025321.01.T01:intron 40.0%
! GATCACTACCTGTTGTTGTT+TGG + Chr5:16929317-16929336 None:intergenic 40.0%
! GGTGATCAGGTAATCTTTTG+GGG - Chr5:16930711-16930730 MsG0580025321.01.T01:intron 40.0%
! TCCAGCTACCTCTTTTACAT+GGG - Chr5:16932769-16932788 MsG0580025321.01.T01:intron 40.0%
! TTATGTTCCTCTTTTGGCAG+TGG + Chr5:16932397-16932416 None:intergenic 40.0%
! TTTCTTGTTTGTCACTGGCA+AGG - Chr5:16931705-16931724 MsG0580025321.01.T01:intron 40.0%
!! ATTGAAGAGAAGCACTTGCA+AGG + Chr5:16930635-16930654 None:intergenic 40.0%
!! CTATTGTACATGTTGGCTTC+TGG - Chr5:16932249-16932268 MsG0580025321.01.T01:intron 40.0%
!! CTCATCTTGATTTGCCTTGT+AGG - Chr5:16932967-16932986 MsG0580025321.01.T01:intron 40.0%
!! CTTTTGGTGGTTGAATTTCC+AGG - Chr5:16933353-16933372 MsG0580025321.01.T01:intron 40.0%
!! TTGAAGAGAAGCACTTGCAA+GGG + Chr5:16930634-16930653 None:intergenic 40.0%
!!! GGGCACATACTTTTTTGCAA+AGG - Chr5:16932477-16932496 MsG0580025321.01.T01:CDS 40.0%
AACAAGCCTTAGCGTGTGTT+TGG + Chr5:16930028-16930047 None:intergenic 45.0%
AATAACTTCCCCCTGAAAGG+AGG + Chr5:16931509-16931528 None:intergenic 45.0%
AATTTCCAGGTTGCTGCCAA+TGG - Chr5:16933366-16933385 MsG0580025321.01.T01:intron 45.0%
ACTTAGCAATGAACCGCTCA+TGG - Chr5:16930223-16930242 MsG0580025321.01.T01:intron 45.0%
AGAGCATAAATCTGCCCTTG+TGG - Chr5:16931191-16931210 MsG0580025321.01.T01:intron 45.0%
AGTACCAGCGAACAAGATAC+CGG - Chr5:16933458-16933477 MsG0580025321.01.T01:CDS 45.0%
AGTTCCAAGCAGATGGAGAT+AGG - Chr5:16930453-16930472 MsG0580025321.01.T01:intron 45.0%
ATCGAGTTACACCTATTGGG+AGG + Chr5:16931456-16931475 None:intergenic 45.0%
CCACAGTCAATCTGTCCATT+AGG - Chr5:16931791-16931810 MsG0580025321.01.T01:intron 45.0%
CCATTTGATGCTCAAGCTGA+AGG - Chr5:16932998-16933017 MsG0580025321.01.T01:intron 45.0%
CCCAATAGGTGTAACTCGAT+AGG - Chr5:16931456-16931475 MsG0580025321.01.T01:intron 45.0%
CCCTATCGAGTTACACCTAT+TGG + Chr5:16931460-16931479 None:intergenic 45.0%
CCTTCAGCTTGAGCATCAAA+TGG + Chr5:16933001-16933020 None:intergenic 45.0%
CGATTATGTTGTAGTCCGTC+AGG - Chr5:16933042-16933061 MsG0580025321.01.T01:intron 45.0%
CTCCAAGAACATCCGATGAA+AGG + Chr5:16932325-16932344 None:intergenic 45.0%
CTCTGCTTATGTACAGAGAC+AGG - Chr5:16933431-16933450 MsG0580025321.01.T01:CDS 45.0%
CTGTCTCTGTACATAAGCAG+AGG + Chr5:16933433-16933452 None:intergenic 45.0%
CTTGATCAACAGTCAACTGC+AGG + Chr5:16932567-16932586 None:intergenic 45.0%
GACGAAGTTTGTCGTAGTTG+TGG + Chr5:16930981-16931000 None:intergenic 45.0%
GAGACTTTGCTTGGGATCTT+AGG - Chr5:16930690-16930709 MsG0580025321.01.T01:intron 45.0%
GCAAGTCAAATCAGCTAGAC+TGG + Chr5:16933321-16933340 None:intergenic 45.0%
GGAAATAACTTCCCCCTGAA+AGG + Chr5:16931512-16931531 None:intergenic 45.0%
GGAAGCAAGCTAGTAGATTG+AGG - Chr5:16929281-16929300 MsG0580025321.01.T01:CDS 45.0%
GGAGAATTCAATGGCAATGC+TGG - Chr5:16933399-16933418 MsG0580025321.01.T01:intron 45.0%
TAAGCAAGTGTTCGGTTCTG+CGG + Chr5:16929728-16929747 None:intergenic 45.0%
TATTCCGGTATCTTGTTCGC+TGG + Chr5:16933465-16933484 None:intergenic 45.0%
TCAGATTCATCAGCCATGAG+CGG + Chr5:16930239-16930258 None:intergenic 45.0%
TCCCATGTAAAAGAGGTAGC+TGG + Chr5:16932773-16932792 None:intergenic 45.0%
TCGTGGTTCAACTGTTTGAG+TGG - Chr5:16931407-16931426 MsG0580025321.01.T01:intron 45.0%
TCTCCAGAGCCTTTCTACAA+TGG - Chr5:16931275-16931294 MsG0580025321.01.T01:intron 45.0%
TGAGCGGTTCATTGCTAAGT+TGG + Chr5:16930223-16930242 None:intergenic 45.0%
TTCACGCTAAATGCAGGGTT+CGG - Chr5:16931845-16931864 MsG0580025321.01.T01:intron 45.0%
TTCAGTGAGGAAGTTGGCTA+AGG - Chr5:16930560-16930579 MsG0580025321.01.T01:intron 45.0%
TTCTCCTTCAGACCATCCAT+TGG + Chr5:16933385-16933404 None:intergenic 45.0%
TTCTCTACCAAGTGCCACAA+GGG + Chr5:16931208-16931227 None:intergenic 45.0%
TTCTGCGTCCCATGTAAAAG+AGG + Chr5:16932780-16932799 None:intergenic 45.0%
TTTCTGCAGAGAGTTCCATG+AGG - Chr5:16931142-16931161 MsG0580025321.01.T01:intron 45.0%
! AAAAGGGGGCACAAAAGGAA+AGG + Chr5:16932099-16932118 None:intergenic 45.0%
! ATCAGGCTGCTGAAGTTTTG+AGG - Chr5:16931091-16931110 MsG0580025321.01.T01:intron 45.0%
! ATGCTGAGAGAGCTTTTCAC+CGG - Chr5:16932128-16932147 MsG0580025321.01.T01:CDS 45.0%
! CCTAATGGACAGATTGACTG+TGG + Chr5:16931794-16931813 None:intergenic 45.0%
! CTAGAATAACAAGGGCATGC+CGG + Chr5:16932150-16932169 None:intergenic 45.0%
! GAACATCCGATGAAAGGTAC+AGG + Chr5:16932319-16932338 None:intergenic 45.0%
! TTTCCTTTTGTGCCCCCTTT+TGG - Chr5:16932098-16932117 MsG0580025321.01.T01:CDS 45.0%
! TTTTCAGCGGCATATCGTTC+GGG - Chr5:16930407-16930426 MsG0580025321.01.T01:intron 45.0%
!! TGAAGAGAAGCACTTGCAAG+GGG + Chr5:16930633-16930652 None:intergenic 45.0%
!! TTCTGCATTCTGAAGCCTCA+TGG + Chr5:16931160-16931179 None:intergenic 45.0%
!!! TTTTTTTGTTTGGGGGAGGG+AGG + Chr5:16932063-16932082 None:intergenic 45.0%
!!! AAAATAATTTTTTTTTTGTT+TGG + Chr5:16932073-16932092 None:intergenic 5.0%
!!! AAATAATTTTTTTTTTGTTT+GGG + Chr5:16932072-16932091 None:intergenic 5.0%
AAATCTGCCCTTGTGGCACT+TGG - Chr5:16931198-16931217 MsG0580025321.01.T01:intron 50.0%
ACTCGCGTTCTACACCCTAA+TGG + Chr5:16931809-16931828 None:intergenic 50.0%
AGGCGAGTGTCAAAAGCTCT+CGG + Chr5:16931377-16931396 None:intergenic 50.0%
ATTGGGAGGCTGAGAACCAA+AGG + Chr5:16931442-16931461 None:intergenic 50.0%
CAAGGGGGTAAGTACTACCT+TGG + Chr5:16930617-16930636 None:intergenic 50.0%
CCACAATGGCATGCATATGG+TGG - Chr5:16931032-16931051 MsG0580025321.01.T01:intron 50.0%
CCACCATATGCATGCCATTG+TGG + Chr5:16931035-16931054 None:intergenic 50.0%
CTCGCCTATGAGGTTAATCG+TGG - Chr5:16931390-16931409 MsG0580025321.01.T01:intron 50.0%
CTGCCACAATGGCATGCATA+TGG - Chr5:16931029-16931048 MsG0580025321.01.T01:intron 50.0%
CTTCTCTACCAAGTGCCACA+AGG + Chr5:16931209-16931228 None:intergenic 50.0%
GAGTGTCAAAAGCTCTCGGT+TGG + Chr5:16931373-16931392 None:intergenic 50.0%
GCAGAACCAAACACACGCTA+AGG - Chr5:16930019-16930038 MsG0580025321.01.T01:intron 50.0%
GCTTGGGATCTTAGGTGATC+AGG - Chr5:16930698-16930717 MsG0580025321.01.T01:intron 50.0%
GGGACTGAGAATGACAACCA+AGG - Chr5:16930597-16930616 MsG0580025321.01.T01:CDS 50.0%
GTCACCTATCTCCATCTGCT+TGG + Chr5:16930460-16930479 None:intergenic 50.0%
TCAGCATCCACCTGCCAAAA+GGG + Chr5:16932115-16932134 None:intergenic 50.0%
TCGTCAAGAAGTAGAAGGCC+AGG - Chr5:16930996-16931015 MsG0580025321.01.T01:intron 50.0%
TGCTGCTATGTCGTCAGTTG+AGG - Chr5:16931233-16931252 MsG0580025321.01.T01:intron 50.0%
TTTCAGCGGCATATCGTTCG+GGG - Chr5:16930408-16930427 MsG0580025321.01.T01:intron 50.0%
! GCTTTTGACACTCGCCTATG+AGG - Chr5:16931380-16931399 MsG0580025321.01.T01:intron 50.0%
! TTGGTTCTCAGCCTCCCAAT+AGG - Chr5:16931442-16931461 MsG0580025321.01.T01:intron 50.0%
!! GAAGAGAAGCACTTGCAAGG+GGG + Chr5:16930632-16930651 None:intergenic 50.0%
!! GAGGCGTCGATCAAAGTTGA+GGG - Chr5:16931110-16931129 MsG0580025321.01.T01:intron 50.0%
!! TGAGGCGTCGATCAAAGTTG+AGG - Chr5:16931109-16931128 MsG0580025321.01.T01:intron 50.0%
ACCATCCATTGGCAGCAACC+TGG + Chr5:16933374-16933393 None:intergenic 55.0%
AGCATCCACCTGCCAAAAGG+GGG + Chr5:16932113-16932132 None:intergenic 55.0%
CAGCATCCACCTGCCAAAAG+GGG + Chr5:16932114-16932133 None:intergenic 55.0%
CAGGTTCTCCTCCTTTCAGG+GGG - Chr5:16931498-16931517 MsG0580025321.01.T01:CDS 55.0%
CCACTCGACAAACACCCCAT+TGG - Chr5:16931530-16931549 MsG0580025321.01.T01:CDS 55.0%
CCAGGTTCTCCTCCTTTCAG+GGG - Chr5:16931497-16931516 MsG0580025321.01.T01:CDS 55.0%
CCCAGGTTCTCCTCCTTTCA+GGG - Chr5:16931496-16931515 MsG0580025321.01.T01:CDS 55.0%
CCCTGAAAGGAGGAGAACCT+GGG + Chr5:16931499-16931518 None:intergenic 55.0%
CCTGAAAGGAGGAGAACCTG+GGG + Chr5:16931498-16931517 None:intergenic 55.0%
CTCAGCATCCACCTGCCAAA+AGG + Chr5:16932116-16932135 None:intergenic 55.0%
GAGGAGAACCTGGGGAATCT+GGG + Chr5:16931490-16931509 None:intergenic 55.0%
GATTCGAACCCAGATTCCCC+AGG - Chr5:16931479-16931498 MsG0580025321.01.T01:CDS 55.0%
GCTGCCAATGGATGGTCTGA+AGG - Chr5:16933378-16933397 MsG0580025321.01.T01:intron 55.0%
TCCAGGTTGCTGCCAATGGA+TGG - Chr5:16933370-16933389 MsG0580025321.01.T01:intron 55.0%
! CCAATGGGGTGTTTGTCGAG+TGG + Chr5:16931533-16931552 None:intergenic 55.0%
! CTGCCAAAAGGGGGCACAAA+AGG + Chr5:16932104-16932123 None:intergenic 55.0%
! CTTTTGTGCCCCCTTTTGGC+AGG - Chr5:16932102-16932121 MsG0580025321.01.T01:CDS 55.0%
!! CATATCGTTCGGGGCGTTGA+AGG - Chr5:16930417-16930436 MsG0580025321.01.T01:intron 55.0%
CCCCAGGTTCTCCTCCTTTC+AGG - Chr5:16931495-16931514 MsG0580025321.01.T01:CDS 60.0%
CCCCTGAAAGGAGGAGAACC+TGG + Chr5:16931500-16931519 None:intergenic 60.0%
GGAGGAGAACCTGGGGAATC+TGG + Chr5:16931491-16931510 None:intergenic 60.0%
! TTGTGCCCCCTTTTGGCAGG+TGG - Chr5:16932105-16932124 MsG0580025321.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16929268 16933485 16929268 ID=MsG0580025321.01;Name=MsG0580025321.01
Chr5 mRNA 16929268 16933485 16929268 ID=MsG0580025321.01.T01;Parent=MsG0580025321.01;Name=MsG0580025321.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|9|0|337
Chr5 exon 16933426 16933485 16933426 ID=MsG0580025321.01.T01:exon:22814;Parent=MsG0580025321.01.T01
Chr5 exon 16932440 16932553 16932440 ID=MsG0580025321.01.T01:exon:22813;Parent=MsG0580025321.01.T01
Chr5 exon 16932279 16932348 16932279 ID=MsG0580025321.01.T01:exon:22812;Parent=MsG0580025321.01.T01
Chr5 exon 16932034 16932188 16932034 ID=MsG0580025321.01.T01:exon:22811;Parent=MsG0580025321.01.T01
Chr5 exon 16931457 16931672 16931457 ID=MsG0580025321.01.T01:exon:22810;Parent=MsG0580025321.01.T01
Chr5 exon 16930567 16930629 16930567 ID=MsG0580025321.01.T01:exon:22809;Parent=MsG0580025321.01.T01
Chr5 exon 16930255 16930404 16930255 ID=MsG0580025321.01.T01:exon:22808;Parent=MsG0580025321.01.T01
Chr5 exon 16929690 16929764 16929690 ID=MsG0580025321.01.T01:exon:22807;Parent=MsG0580025321.01.T01
Chr5 exon 16929268 16929378 16929268 ID=MsG0580025321.01.T01:exon:22806;Parent=MsG0580025321.01.T01
Chr5 CDS 16933426 16933485 16933426 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16932440 16932553 16932440 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16932279 16932348 16932279 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16932034 16932188 16932034 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16931457 16931672 16931457 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16930567 16930629 16930567 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16930255 16930404 16930255 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16929690 16929764 16929690 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Chr5 CDS 16929268 16929378 16929268 ID=MsG0580025321.01.T01:cds;Parent=MsG0580025321.01.T01
Gene Sequence

>MsG0580025321.01.T01

ATGGATGCTATAAGGAAGCAAGCTAGTAGATTGAGGGAACAAGTTGCCAAACAACAACAGTCTATACTTAGACAGTTGGGCCAACTTAGCAATGAACCGCTCATGGCTGATGAATCTGAACTTGAATGTTTTCATAAACTTCAAAAGTTATACACTTCTACAAAGACTGCTAAGCATTTTCAGCGGCATATCGTTCGGGGCGTTGAAGGATTAATTTCTGTTAGTTCCAAGCAGATGGAGATAGTGAGGAAGTTGGCTAAGGACTGTTGTAAGTATGGGACTGAGAATGACAACCAAGGTAGTACTTACCCCCTTGCAAGTGCTTCTCTTCAATTCGGTAACTCATACGATATATTGGAAAATGAAAGGGAGACTTTGCTTGGGATCTTAGGTGATCAGATATCTTCTCATCAGGCTGCTGAAGTTTTGAGGCGTCGATCAAAGTTGAGGGATTCTTCTCTTTCTGCAGAGAGTTCCATGAGGCTTCAGAATGCAGAAAAAAAGTTGAAAGAGCATAAATCTGCCCTTGTGGCACTTGGTAGAGAAGCAACTGCTGCTATGTCGTCAGTTGAGGAACAACAGCAACATATAACTCTCCAGAGCCTTTCTACAATGGTGGATGCTGAGAGAGCTTTTCACCGGCATGCCCTTGTTATTCTAGATAAACTACATGCTGAGATGATCATGATTGATGAGAGACAACCACAAGACTCTACATCATTTCCACTGCCAAAAGAGGAACATAATCAACCTGCAAATGAGAAAGTTAATCCAAATGGCATTCGTTATAAACATAACACCCAAATGGGCACATACTTTTTTGCAAAGGTCATACATCCATTTGATGCTCAAGCTGAAGGGGAGTTAAGTTTATCAGTTGACGATTATGTTGTAGTCCGTCAGGTTGCTGCCAATGGATGGTCTGAAGGAGAATTCAATGGCAATGCTGGATGGTTTCCCTCTGCTTATGTACAGAGACAGGACGTAGTACCAGCGAACAAGATACCGGAATAA

Protein sequence

>MsG0580025321.01.T01

MDAIRKQASRLREQVAKQQQSILRQLGQLSNEPLMADESELECFHKLQKLYTSTKTAKHFQRHIVRGVEGLISVSSKQMEIVRKLAKDCCKYGTENDNQGSTYPLASASLQFGNSYDILENERETLLGILGDQISSHQAAEVLRRRSKLRDSSLSAESSMRLQNAEKKLKEHKSALVALGREATAAMSSVEEQQQHITLQSLSTMVDAERAFHRHALVILDKLHAEMIMIDERQPQDSTSFPLPKEEHNQPANEKVNPNGIRYKHNTQMGTYFFAKVIHPFDAQAEGELSLSVDDYVVVRQVAANGWSEGEFNGNAGWFPSAYVQRQDVVPANKIPE*