AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024793.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024793.01.T01 MTR_5g016600 98.214 504 9 0 1 504 1 504 0.0 1016
MsG0580024793.01.T01 MTR_4g094912 68.093 514 136 9 1 501 1 499 0.0 641
MsG0580024793.01.T01 MTR_3g111060 27.986 293 160 9 151 434 188 438 5.39e-24 104
MsG0580024793.01.T01 MTR_3g110142 29.532 342 178 15 113 432 131 431 1.58e-22 100
MsG0580024793.01.T01 MTR_3g110142 31.298 262 129 10 113 359 131 356 7.38e-20 92.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024793.01.T01 AT5G67230 62.868 509 162 8 1 499 1 492 0.0 643
MsG0580024793.01.T01 AT4G36890 67.396 457 127 8 1 439 1 453 0.0 605
MsG0580024793.01.T01 AT1G27600 29.866 298 157 10 150 437 139 394 1.37e-25 108
MsG0580024793.01.T01 AT1G27600 29.866 298 157 10 150 437 139 394 1.37e-25 108
MsG0580024793.01.T01 AT2G37090 24.870 386 225 21 40 416 18 347 2.71e-13 71.6

Find 152 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGACTGCTTCAATTAT+TGG 0.098423 5:-9725298 MsG0580024793.01.T01:CDS
TCTTTCATATGAACGGATTT+AGG 0.127596 5:+9722027 None:intergenic
TGATGCGTCTTCATGCTTTA+AGG 0.188622 5:-9725192 MsG0580024793.01.T01:intron
CTTCAATTCATTACGATATA+CGG 0.199782 5:-9723977 MsG0580024793.01.T01:CDS
AAGAATTTGAATTGATTAAA+AGG 0.205637 5:-9722184 MsG0580024793.01.T01:three_prime_UTR
GCTTCAATTATTGGAAAATC+TGG 0.212918 5:-9725289 MsG0580024793.01.T01:CDS
ACTTCTACTGCGTCTGGATC+TGG 0.214817 5:+9722336 None:intergenic
CTTTCATATGAACGGATTTA+GGG 0.237938 5:+9722028 None:intergenic
TTATTGGAAAATCTGGATTA+AGG 0.251089 5:-9725282 MsG0580024793.01.T01:CDS
TGCTTAATCAGCCTCGTTCT+CGG 0.309400 5:-9725745 MsG0580024793.01.T01:CDS
CCGACAAAATTTGAATGGTC+TGG 0.319336 5:-9723913 MsG0580024793.01.T01:CDS
ATGTCTATCCTCCCACAAAC+TGG 0.330083 5:+9725228 None:intergenic
TGATAGTAATATGCATAATA+TGG 0.344407 5:-9724184 MsG0580024793.01.T01:CDS
CCGTTCATATGAAAGATTAA+AGG 0.348115 5:-9722020 MsG0580024793.01.T01:three_prime_UTR
CGATAAGCCAGAGTGGATTA+AGG 0.360709 5:-9723851 MsG0580024793.01.T01:CDS
TGCAGCTGAAATTTCTTCAT+TGG 0.365838 5:-9724088 MsG0580024793.01.T01:CDS
TTCCACCGGAACAGTGATTC+CGG 0.373427 5:+9725633 None:intergenic
AACATCCTTCCAAAGTAATC+TGG 0.378146 5:+9723876 None:intergenic
GGGAGTTCAGGAGGAGAGTC+TGG 0.378580 5:+9722436 None:intergenic
TCTCTTACTTCTACTGCGTC+TGG 0.379222 5:+9722330 None:intergenic
CGACAAAATTTGAATGGTCT+GGG 0.388127 5:-9723912 MsG0580024793.01.T01:CDS
ATGGGTGATTGACCCTCCTT+TGG 0.392966 5:-9722491 MsG0580024793.01.T01:CDS
TTCATTACTTCCACAGGATC+CGG 0.393487 5:+9725517 None:intergenic
ATGAAATTCAGAGTGTGAAA+TGG 0.395347 5:-9724152 MsG0580024793.01.T01:CDS
AATGAACAGAGATTGTTGTT+TGG 0.396717 5:-9725466 MsG0580024793.01.T01:CDS
AGGAGAAGCTGATGTCTTCT+TGG 0.397900 5:-9722164 MsG0580024793.01.T01:three_prime_UTR
GAACAAACCGAGATATGAAT+TGG 0.407021 5:-9722262 MsG0580024793.01.T01:exon
GATTAAGGATTATTCATGTT+GGG 0.408461 5:-9725267 MsG0580024793.01.T01:CDS
CGTTCATATGAAAGATTAAA+GGG 0.418193 5:-9722019 MsG0580024793.01.T01:three_prime_UTR
GATGCGGCCATGGCCGAATC+CGG 0.419202 5:+9725539 None:intergenic
CTCTGAAGCTGTTTGTTCTA+CGG 0.421760 5:+9725845 None:intergenic
GGAGACACGGGATCCGGATT+CGG 0.428474 5:-9725552 MsG0580024793.01.T01:CDS
GGCCATGGAGTGCGTTTCGA+TGG 0.429896 5:+9722457 None:intergenic
ACTTGGATTGTGGTTGAAGC+TGG 0.431515 5:-9725331 MsG0580024793.01.T01:CDS
GCGCCGGTGCCGGAGGTGAA+TGG 0.438005 5:+9725655 None:intergenic
AGAAAACAAGACGAGAAAAT+CGG 0.438239 5:+9725719 None:intergenic
AATTGTCGCCGGTGACTTAA+CGG 0.438702 5:+9725795 None:intergenic
CAACAGAATGTTCTAACAAA+CGG 0.440408 5:-9725607 MsG0580024793.01.T01:CDS
AACAGAATGTTCTAACAAAC+GGG 0.445176 5:-9725606 MsG0580024793.01.T01:CDS
TCAGAAAATGCCCAGTTTGT+GGG 0.445775 5:-9725239 MsG0580024793.01.T01:CDS
CGTATATCGTAATGAATTGA+AGG 0.445991 5:+9723978 None:intergenic
CTTCTACTGCGTCTGGATCT+GGG 0.446602 5:+9722337 None:intergenic
GATTCGGCCATGGCCGCATC+CGG 0.448954 5:-9725536 MsG0580024793.01.T01:CDS
AGTGATTCCGGCGCCGGTGC+CGG 0.451879 5:+9725645 None:intergenic
ATCAGAAAATGCCCAGTTTG+TGG 0.453676 5:-9725240 MsG0580024793.01.T01:CDS
CTGCATGCGAAAGAATGAAA+TGG 0.454711 5:+9721895 None:intergenic
TGCAACGTTGGCTGTCTTGT+GGG 0.460080 5:-9721979 MsG0580024793.01.T01:three_prime_UTR
TGCGCTTTCATTACTTCCAC+AGG 0.460964 5:+9725511 None:intergenic
TTCACCTCCGGCACCGGCGC+CGG 0.461470 5:-9725652 MsG0580024793.01.T01:CDS
GGATTAAGGATTATTCATGT+TGG 0.462578 5:-9725268 MsG0580024793.01.T01:CDS
GAAATGGATCGGTGCTGTTT+CGG 0.465735 5:-9724136 MsG0580024793.01.T01:CDS
GGTGGAGGGACTCACAGAGC+AGG 0.467633 5:+9723679 None:intergenic
CGGCGCCGGAATCACTGTTC+CGG 0.471719 5:-9725638 MsG0580024793.01.T01:CDS
TGTTGAATTCCAGATTACTT+TGG 0.473184 5:-9723885 MsG0580024793.01.T01:CDS
CACCAAAGTGATTGGTGTAC+AGG 0.476382 5:-9722299 MsG0580024793.01.T01:CDS
CGCCGGTGACTTAACGGCGC+CGG 0.479709 5:+9725801 None:intergenic
CGCCGGCGCCGTTAAGTCAC+CGG 0.482259 5:-9725803 MsG0580024793.01.T01:CDS
TGTTCTAACAAACGGGAGTT+CGG 0.482950 5:-9725599 MsG0580024793.01.T01:CDS
ACAATCCAAGTCAGATCATA+AGG 0.485169 5:+9725343 None:intergenic
ACAGGATCCGGATGCGGCCA+TGG 0.485837 5:+9725529 None:intergenic
AACAAACGGGAGTTCGGTAG+TGG 0.486109 5:-9725593 MsG0580024793.01.T01:CDS
AAGCATGACACCAAAGTGAT+TGG 0.488095 5:-9722307 MsG0580024793.01.T01:CDS
CCTTTAATCTTTCATATGAA+CGG 0.491162 5:+9722020 None:intergenic
AGATGCACCAATTCATATCT+CGG 0.491651 5:+9722255 None:intergenic
TACACCGTTCCATTCACCTC+CGG 0.496125 5:-9725664 MsG0580024793.01.T01:CDS
TTATGATCTGACTTGGATTG+TGG 0.497071 5:-9725341 MsG0580024793.01.T01:CDS
AGAGGCTTAGATTCAGATAA+CGG 0.497985 5:-9725826 MsG0580024793.01.T01:CDS
GCAGGACCTTGCACCGGCAT+TGG 0.498839 5:+9724036 None:intergenic
TTCAATTCATTACGATATAC+GGG 0.499087 5:-9723976 MsG0580024793.01.T01:CDS
TGTTGCCGACAAAATTTGAA+TGG 0.500655 5:-9723918 MsG0580024793.01.T01:CDS
AAGGATCTTGATGCATTGGA+TGG 0.504502 5:-9723832 MsG0580024793.01.T01:CDS
CGGAACAGTGATTCCGGCGC+CGG 0.505384 5:+9725639 None:intergenic
CATCGAATAAAATTGAATAC+AGG 0.505551 5:+9721953 None:intergenic
GTTCCATTCACCTCCGGCAC+CGG 0.506995 5:-9725658 MsG0580024793.01.T01:CDS
GTGCAGTTTACATTGATGAC+CGG 0.511167 5:-9723948 MsG0580024793.01.T01:CDS
TTGCAACGTTGGCTGTCTTG+TGG 0.512397 5:-9721980 MsG0580024793.01.T01:three_prime_UTR
TGGTTGGGAGACACGGGATC+CGG 0.512530 5:-9725558 MsG0580024793.01.T01:CDS
GATTGTGAGAAAAGAGAAGC+TGG 0.516119 5:-9724229 MsG0580024793.01.T01:CDS
TTGTCGGCAACACTGGTGCC+CGG 0.518942 5:+9723929 None:intergenic
GATTAAGGATCTTGATGCAT+TGG 0.519612 5:-9723836 MsG0580024793.01.T01:CDS
ACCTTGCACCGGCATTGGCA+TGG 0.519908 5:+9724041 None:intergenic
TGGATCGGTGCTGTTTCGGT+TGG 0.520170 5:-9724132 MsG0580024793.01.T01:CDS
TGGAACGGTGTAAATATTAG+TGG 0.521470 5:+9725675 None:intergenic
GCCATGGAGTGCGTTTCGAT+GGG 0.536780 5:+9722458 None:intergenic
GGAGAAGAAGATGGTGGTGT+TGG 0.537405 5:+9726040 None:intergenic
ATTCAAATTCTTGTCGCAGA+AGG 0.537501 5:+9722195 None:intergenic
GTGCAAGGTCCTGCTTGTAA+TGG 0.539674 5:-9724027 MsG0580024793.01.T01:CDS
TTTCAAGCGATGCATTTGAC+TGG 0.539811 5:-9725391 MsG0580024793.01.T01:CDS
TGGCGAGTAGAGTCGTGGTT+GGG 0.540904 5:-9725573 MsG0580024793.01.T01:CDS
TCAGGAGGAGAGTCTGGCCA+TGG 0.544157 5:+9722442 None:intergenic
AGAGTCGTGGTTGGGAGACA+CGG 0.549723 5:-9725565 MsG0580024793.01.T01:CDS
TGAGGAAACCATGCCAATGC+CGG 0.551614 5:-9724049 MsG0580024793.01.T01:CDS
AGGATCTTGATGCATTGGAT+GGG 0.552743 5:-9723831 MsG0580024793.01.T01:CDS
ACCATGCCAATGCCGGTGCA+AGG 0.552760 5:-9724042 MsG0580024793.01.T01:CDS
GTGGCGAGTAGAGTCGTGGT+TGG 0.558097 5:-9725574 MsG0580024793.01.T01:CDS
CAGCTGCATCAACAGAATGA+AGG 0.558512 5:+9724103 None:intergenic
TCAAGATCCTTAATCCACTC+TGG 0.559323 5:+9723844 None:intergenic
CGCCGGAATCACTGTTCCGG+TGG 0.559732 5:-9725635 MsG0580024793.01.T01:CDS
AAGCAAGTTGGAGAAGAAGA+TGG 0.562027 5:+9726031 None:intergenic
TTGTAATGGTACTGATAAGT+TGG 0.564365 5:-9724013 MsG0580024793.01.T01:CDS
TTGTGCCTTATGATCTGACT+TGG 0.564918 5:-9725348 MsG0580024793.01.T01:CDS
ACGGGATCCGGATTCGGCCA+TGG 0.566818 5:-9725546 MsG0580024793.01.T01:CDS
TCATTAGATGGGAGTTCAGG+AGG 0.569861 5:+9722427 None:intergenic
TTGTGTTTATAAGAGAATGC+TGG 0.571085 5:-9722218 MsG0580024793.01.T01:three_prime_UTR
GAATTCCAGATTACTTTGGA+AGG 0.571302 5:-9723881 MsG0580024793.01.T01:CDS
TGCAGTTTACATTGATGACC+GGG 0.572154 5:-9723947 MsG0580024793.01.T01:CDS
ATGGTACTGATAAGTTGGTC+GGG 0.572519 5:-9724008 MsG0580024793.01.T01:CDS
GATTCCGGCGCCGGTGCCGG+AGG 0.573917 5:+9725648 None:intergenic
ATGGCCGCATCCGGATCCTG+TGG 0.574190 5:-9725527 MsG0580024793.01.T01:CDS
ACTTCCACAGGATCCGGATG+CGG 0.575433 5:+9725523 None:intergenic
AGACACGAATGCACATATGC+TGG 0.577405 5:+9722106 None:intergenic
ACATTCTGTTGAGTTTCCAC+CGG 0.578267 5:+9725619 None:intergenic
CGTAGAACAAACAGCTTCAG+AGG 0.580812 5:-9725844 MsG0580024793.01.T01:CDS
GACCTGTACACCAATCACTT+TGG 0.581284 5:+9722297 None:intergenic
TTAGATTCAGATAACGGCGC+CGG 0.583256 5:-9725820 MsG0580024793.01.T01:CDS
TGTGAAAGTAAGAAGCAAGT+TGG 0.583322 5:+9726019 None:intergenic
TCCCATCGAAACGCACTCCA+TGG 0.588526 5:-9722459 MsG0580024793.01.T01:CDS
CTTGATGCATTGGATGGGGA+TGG 0.588763 5:-9723826 MsG0580024793.01.T01:CDS
AATGGTACTGATAAGTTGGT+CGG 0.589439 5:-9724009 MsG0580024793.01.T01:CDS
TGGATTGTGGTTGAAGCTGG+TGG 0.591755 5:-9725328 MsG0580024793.01.T01:CDS
TGTCTATCCTCCCACAAACT+GGG 0.597037 5:+9725229 None:intergenic
GTGAGAAAAGAGAAGCTGGA+TGG 0.604430 5:-9724225 MsG0580024793.01.T01:CDS
GCAACCACCAAAGCAAAACA+TGG 0.606572 5:+9723731 None:intergenic
GTAGAACCACTAGGGAGTTG+TGG 0.607713 5:-9723757 MsG0580024793.01.T01:CDS
GTGGAAGTAATGAAAGCGCA+TGG 0.608289 5:-9725508 MsG0580024793.01.T01:CDS
GAGTCGTGGTTGGGAGACAC+GGG 0.613626 5:-9725564 MsG0580024793.01.T01:CDS
ACCTCTGTGGTAGAACCACT+AGG 0.613698 5:-9723766 MsG0580024793.01.T01:CDS
GGATCTTGATGCATTGGATG+GGG 0.614063 5:-9723830 MsG0580024793.01.T01:CDS
GTGGAGGGACTCACAGAGCA+GGG 0.618643 5:+9723680 None:intergenic
CAAGTTGGAGAAGAAGATGG+TGG 0.620394 5:+9726034 None:intergenic
GATGGGACTGTGATGTCCAA+AGG 0.622491 5:+9722475 None:intergenic
AAAATCGGAAGCCGAGAACG+AGG 0.625000 5:+9725734 None:intergenic
GGGACTGTGATGTCCAAAGG+AGG 0.626469 5:+9722478 None:intergenic
ATTCATTACGATATACGGGA+AGG 0.635243 5:-9723972 MsG0580024793.01.T01:CDS
TTACAAGCAGGACCTTGCAC+CGG 0.643021 5:+9724030 None:intergenic
GAAAATGCCCAGTTTGTGGG+AGG 0.647991 5:-9725236 MsG0580024793.01.T01:CDS
ACTAGCCAGAAAATTGTCGC+CGG 0.649362 5:+9725784 None:intergenic
CCTCTGTGGTAGAACCACTA+GGG 0.659169 5:-9723765 MsG0580024793.01.T01:CDS
TTATCAGTACCATTACAAGC+AGG 0.660972 5:+9724018 None:intergenic
GGTGCCGGAGGTGAATGGAA+CGG 0.663294 5:+9725660 None:intergenic
AGCATTCTCTTATAAACACA+AGG 0.671290 5:+9722220 None:intergenic
GGACTGTGATGTCCAAAGGA+GGG 0.672528 5:+9722479 None:intergenic
ATTCAGAGTGTGAAATGGAT+CGG 0.672674 5:-9724147 MsG0580024793.01.T01:CDS
TGAAAAGTCCTCACATACGT+TGG 0.684360 5:+9725409 None:intergenic
GGTAGTGGCGAGTAGAGTCG+TGG 0.693719 5:-9725578 MsG0580024793.01.T01:CDS
TTTGCTCAAGAGTACCTCTG+TGG 0.694643 5:-9723779 MsG0580024793.01.T01:CDS
TGGCGTCCACAACTCCCTAG+TGG 0.699177 5:+9723751 None:intergenic
GTACTCTTGAGCAAAGACAG+TGG 0.702361 5:+9723787 None:intergenic
TTGTGACACCAACGTATGTG+AGG 0.703517 5:-9725417 MsG0580024793.01.T01:CDS
GTACTGATAAGTTGGTCGGG+TGG 0.704370 5:-9724005 MsG0580024793.01.T01:CDS
ATGTTGACGATAAGCCAGAG+TGG 0.723393 5:-9723858 MsG0580024793.01.T01:CDS
CCCTAGTGGTTCTACCACAG+AGG 0.724372 5:+9723765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATAAAAAAAAA+AGG + Chr5:9723636-9723655 None:intergenic 0.0%
!! TAAAAAAAATAAAAAAAAAA+GGG + Chr5:9723635-9723654 None:intergenic 0.0%
!! AAAAAAATAAAAAAAAAAGG+GGG + Chr5:9723633-9723652 None:intergenic 10.0%
!! AAAAAATGTAAAAGAAAAAA+TGG + Chr5:9725875-9725894 None:intergenic 10.0%
!! AAAAATGTAAAAGAAAAAAT+GGG + Chr5:9725874-9725893 None:intergenic 10.0%
!! AAGAATTTGAATTGATTAAA+AGG - Chr5:9725762-9725781 MsG0580024793.01.T01:CDS 15.0%
!!! TGATTTTAGTCTTAAATTTA+TGG - Chr5:9723292-9723311 MsG0580024793.01.T01:intron 15.0%
!!! TTTTACTTGATTTGTTATTA+TGG - Chr5:9722805-9722824 MsG0580024793.01.T01:intron 15.0%
!!! TTTTTTTTCCTTATTTTTCT+TGG - Chr5:9725890-9725909 MsG0580024793.01.T01:exon 15.0%
!!! TTTTTTTTTTTTTGTGTTTG+TGG + Chr5:9722044-9722063 None:intergenic 15.0%
!! AATGAAAGATTCAATTTATG+TGG - Chr5:9724833-9724852 MsG0580024793.01.T01:intron 20.0%
!! ATAATCATGACTATCTTAAT+AGG - Chr5:9724566-9724585 MsG0580024793.01.T01:intron 20.0%
!! ATACAATTGGATATAATGAT+TGG - Chr5:9724959-9724978 MsG0580024793.01.T01:intron 20.0%
!! ATGAAAGATTCAATTTATGT+GGG - Chr5:9724834-9724853 MsG0580024793.01.T01:intron 20.0%
!! ATTAAGATAGTCATGATTAT+AGG + Chr5:9724566-9724585 None:intergenic 20.0%
!! CAAATATGCAAATAAATACA+AGG + Chr5:9725389-9725408 None:intergenic 20.0%
!! GAAATCATTAACAATTGATT+TGG + Chr5:9725080-9725099 None:intergenic 20.0%
!! GTATTTAGTAATTAAGTCAA+AGG + Chr5:9723536-9723555 None:intergenic 20.0%
!! TACAATTGGATATAATGATT+GGG - Chr5:9724960-9724979 MsG0580024793.01.T01:intron 20.0%
!! TGATAGTAATATGCATAATA+TGG - Chr5:9723762-9723781 MsG0580024793.01.T01:CDS 20.0%
!!! AAGTAAAAGCATAAACTAAA+AGG + Chr5:9722793-9722812 None:intergenic 20.0%
!!! ACTTTTTCATTTTCATTAGA+TGG + Chr5:9725534-9725553 None:intergenic 20.0%
!!! ATTGATTTTAACCATAAAAG+TGG + Chr5:9723371-9723390 None:intergenic 20.0%
!!! ATTTATTTCTAGGTTCTTAT+AGG - Chr5:9725292-9725311 MsG0580024793.01.T01:CDS 20.0%
!!! CTTTTTCATTTTCATTAGAT+GGG + Chr5:9725533-9725552 None:intergenic 20.0%
!!! GTCAAACAATTCAAATTTTA+GGG + Chr5:9724453-9724472 None:intergenic 20.0%
!!! TGTAAAATTGATTTTTGTCA+TGG - Chr5:9723216-9723235 MsG0580024793.01.T01:intron 20.0%
!!! TGTCAAACAATTCAAATTTT+AGG + Chr5:9724454-9724473 None:intergenic 20.0%
!!! TTGATTTTAACCATAAAAGT+GGG + Chr5:9723370-9723389 None:intergenic 20.0%
! AATGAATTCTACTTGAAGTT+AGG - Chr5:9723259-9723278 MsG0580024793.01.T01:intron 25.0%
! ACTTTATGACTTTCTTATAC+AGG - Chr5:9724862-9724881 MsG0580024793.01.T01:intron 25.0%
! ATAACATTTCTACTCCAATA+TGG + Chr5:9724737-9724756 None:intergenic 25.0%
! ATGTTGTTAAAATGTGATCA+TGG - Chr5:9725268-9725287 MsG0580024793.01.T01:CDS 25.0%
! ATTACACTAATTGTAGAAGT+AGG + Chr5:9725216-9725235 None:intergenic 25.0%
! ATTCTAAGCAATGTTCTTAT+GGG + Chr5:9724705-9724724 None:intergenic 25.0%
! ATTTGGCAAATGAAAATTAC+GGG + Chr5:9724320-9724339 None:intergenic 25.0%
! CATAGAAATAAGACATCATT+TGG + Chr5:9724337-9724356 None:intergenic 25.0%
! CATCGAATAAAATTGAATAC+AGG + Chr5:9725996-9726015 None:intergenic 25.0%
! CATTTGGCAAATGAAAATTA+CGG + Chr5:9724321-9724340 None:intergenic 25.0%
! CCTTTAATCTTTCATATGAA+CGG + Chr5:9725929-9725948 None:intergenic 25.0%
! CGTTCATATGAAAGATTAAA+GGG - Chr5:9725927-9725946 MsG0580024793.01.T01:five_prime_UTR 25.0%
! CTTCAATTCATTACGATATA+CGG - Chr5:9723969-9723988 MsG0580024793.01.T01:CDS 25.0%
! CTTGAAAAAAATTCTGCAAA+GGG - Chr5:9724806-9724825 MsG0580024793.01.T01:intron 25.0%
! GATTAAGGATTATTCATGTT+GGG - Chr5:9722679-9722698 MsG0580024793.01.T01:intron 25.0%
! TATTCTAAGCAATGTTCTTA+TGG + Chr5:9724706-9724725 None:intergenic 25.0%
! TATTGGAGTAGAAATGTTAT+AGG - Chr5:9724737-9724756 MsG0580024793.01.T01:intron 25.0%
! TGAATGTATTTGTGTAAAAG+TGG + Chr5:9723324-9723343 None:intergenic 25.0%
! TGAATTGAATGACAAGTATA+AGG - Chr5:9723092-9723111 MsG0580024793.01.T01:intron 25.0%
! TTACACTAATTGTAGAAGTA+GGG + Chr5:9725215-9725234 None:intergenic 25.0%
! TTATTGGAAAATCTGGATTA+AGG - Chr5:9722664-9722683 MsG0580024793.01.T01:intron 25.0%
! TTCAATTCATTACGATATAC+GGG - Chr5:9723970-9723989 MsG0580024793.01.T01:CDS 25.0%
!! AAATTTTATGTCTGAGAATG+GGG - Chr5:9725174-9725193 MsG0580024793.01.T01:intron 25.0%
!! CAAATTTTATGTCTGAGAAT+GGG - Chr5:9725173-9725192 MsG0580024793.01.T01:intron 25.0%
!! TGAAAACGTTTAGAATATAG+AGG + Chr5:9724291-9724310 None:intergenic 25.0%
!! TGATCATGGAATTTATTTCT+AGG - Chr5:9725282-9725301 MsG0580024793.01.T01:CDS 25.0%
!! TTAGATCAAAATGTTGGTAA+CGG - Chr5:9725032-9725051 MsG0580024793.01.T01:intron 25.0%
!! TTTTGTACTTCAATTTTCGA+CGG - Chr5:9725321-9725340 MsG0580024793.01.T01:CDS 25.0%
!!! AAATTGATTTTTGTCATGGT+TGG - Chr5:9723220-9723239 MsG0580024793.01.T01:intron 25.0%
!!! AAATTTTAGGGAGTAGTTTT+TGG + Chr5:9724441-9724460 None:intergenic 25.0%
!!! ATGTGAAAGGATTTTTTGTT+TGG - Chr5:9723052-9723071 MsG0580024793.01.T01:intron 25.0%
!!! GATTTGTTAGATCAAAATGT+TGG - Chr5:9725026-9725045 MsG0580024793.01.T01:intron 25.0%
!!! TATTTGGTTTCAAGTTTCTA+GGG - Chr5:9723173-9723192 MsG0580024793.01.T01:intron 25.0%
!!! TCTAACAAATCCTATTTTTC+TGG + Chr5:9725017-9725036 None:intergenic 25.0%
!!! TGTTTTTTACACTATCGTAT+TGG + Chr5:9724383-9724402 None:intergenic 25.0%
!!! TTTTTCCTTATTTTTCTTGG+AGG - Chr5:9725893-9725912 MsG0580024793.01.T01:exon 25.0%
AACAGAATGTTCTAACAAAC+GGG - Chr5:9722340-9722359 MsG0580024793.01.T01:CDS 30.0%
AATGAGACTGCTTCAATTAT+TGG - Chr5:9722648-9722667 MsG0580024793.01.T01:intron 30.0%
AATTGGATATAATGATTGGG+TGG - Chr5:9724963-9724982 MsG0580024793.01.T01:intron 30.0%
AATTGTTAATGATTTCCCAG+GGG - Chr5:9725084-9725103 MsG0580024793.01.T01:intron 30.0%
AATTTGACATCATGTGTGTT+TGG - Chr5:9725241-9725260 MsG0580024793.01.T01:CDS 30.0%
AGAAAACAAGACGAGAAAAT+CGG + Chr5:9722230-9722249 None:intergenic 30.0%
AGCATTCTCTTATAAACACA+AGG + Chr5:9725729-9725748 None:intergenic 30.0%
AGTGAATTGTTAGATGTGAA+AGG - Chr5:9723039-9723058 MsG0580024793.01.T01:intron 30.0%
ATCAGTCTCTAATTGTATGT+CGG - Chr5:9724928-9724947 MsG0580024793.01.T01:intron 30.0%
ATGAAATTCAGAGTGTGAAA+TGG - Chr5:9723794-9723813 MsG0580024793.01.T01:CDS 30.0%
ATGATTGAATATGCCAAATG+TGG - Chr5:9722939-9722958 MsG0580024793.01.T01:intron 30.0%
ATTGGATATAATGATTGGGT+GGG - Chr5:9724964-9724983 MsG0580024793.01.T01:intron 30.0%
CAACAGAATGTTCTAACAAA+CGG - Chr5:9722339-9722358 MsG0580024793.01.T01:CDS 30.0%
CAAGTAGAATTCATTCTACA+AGG + Chr5:9723254-9723273 None:intergenic 30.0%
CAATTGTTAATGATTTCCCA+GGG - Chr5:9725083-9725102 MsG0580024793.01.T01:intron 30.0%
CACAAGGAAAAATCAACAAA+AGG + Chr5:9723688-9723707 None:intergenic 30.0%
CCGTTCATATGAAAGATTAA+AGG - Chr5:9725926-9725945 MsG0580024793.01.T01:five_prime_UTR 30.0%
CGTATATCGTAATGAATTGA+AGG + Chr5:9723971-9723990 None:intergenic 30.0%
GAAATAGCATCATATAGTCA+GGG + Chr5:9725429-9725448 None:intergenic 30.0%
GATTTGCAGTAGAATCTTTA+TGG - Chr5:9722841-9722860 MsG0580024793.01.T01:intron 30.0%
GCATTACAAGGTTTCAAAAA+AGG + Chr5:9723514-9723533 None:intergenic 30.0%
GCTTCAATTATTGGAAAATC+TGG - Chr5:9722657-9722676 MsG0580024793.01.T01:intron 30.0%
GCTTGAAAAAAATTCTGCAA+AGG - Chr5:9724805-9724824 MsG0580024793.01.T01:intron 30.0%
GGATTAAGGATTATTCATGT+TGG - Chr5:9722678-9722697 MsG0580024793.01.T01:intron 30.0%
TAAGTAAGAACTACATAAGC+TGG + Chr5:9724650-9724669 None:intergenic 30.0%
TACATAATCCATGCACTATT+TGG + Chr5:9725352-9725371 None:intergenic 30.0%
TCAATTGTTAATGATTTCCC+AGG - Chr5:9725082-9725101 MsG0580024793.01.T01:intron 30.0%
TGAAATAGCATCATATAGTC+AGG + Chr5:9725430-9725449 None:intergenic 30.0%
TGTTGAATTCCAGATTACTT+TGG - Chr5:9724061-9724080 MsG0580024793.01.T01:CDS 30.0%
TGTTTGAATAATTAGTGTCG+CGG - Chr5:9722869-9722888 MsG0580024793.01.T01:intron 30.0%
TTGTGTTTATAAGAGAATGC+TGG - Chr5:9725728-9725747 MsG0580024793.01.T01:CDS 30.0%
! AAACGTTTAGAATATAGAGG+TGG + Chr5:9724288-9724307 None:intergenic 30.0%
! AATGAACAGAGATTGTTGTT+TGG - Chr5:9722480-9722499 MsG0580024793.01.T01:CDS 30.0%
! AATTTTATGTCTGAGAATGG+GGG - Chr5:9725175-9725194 MsG0580024793.01.T01:intron 30.0%
! CTTTCATATGAACGGATTTA+GGG + Chr5:9725921-9725940 None:intergenic 30.0%
! GCAAATTTTATGTCTGAGAA+TGG - Chr5:9725172-9725191 MsG0580024793.01.T01:intron 30.0%
! TCTTTCATATGAACGGATTT+AGG + Chr5:9725922-9725941 None:intergenic 30.0%
! TGCTGTGTTCTTAATAGTTT+TGG + Chr5:9725155-9725174 None:intergenic 30.0%
! TTTGTACTTCAATTTTCGAC+GGG - Chr5:9725322-9725341 MsG0580024793.01.T01:CDS 30.0%
! TTTTGTGTTTGTGGATGTTA+AGG + Chr5:9722035-9722054 None:intergenic 30.0%
!! ATTAAGTCAAAGGCATTACA+AGG + Chr5:9723526-9723545 None:intergenic 30.0%
!! GTATTTGGTTTCAAGTTTCT+AGG - Chr5:9723172-9723191 MsG0580024793.01.T01:intron 30.0%
!! TCACAACAATCACTTTTCTA+GGG + Chr5:9722515-9722534 None:intergenic 30.0%
!! TCTTCATTGGTTCAAAAAGA+AGG - Chr5:9723871-9723890 MsG0580024793.01.T01:CDS 30.0%
!! TGATTCTGTGAAGTTGATTT+TGG - Chr5:9723011-9723030 MsG0580024793.01.T01:intron 30.0%
!! TTACATTCAACCCACTTTTA+TGG - Chr5:9723357-9723376 MsG0580024793.01.T01:intron 30.0%
!! TTGTAATGGTACTGATAAGT+TGG - Chr5:9723933-9723952 MsG0580024793.01.T01:CDS 30.0%
!!! AATCCTATTTTTCTGGAGTT+AGG + Chr5:9725010-9725029 None:intergenic 30.0%
!!! TTGTTGATTTTTCCTTGTGA+TGG - Chr5:9723689-9723708 MsG0580024793.01.T01:intron 30.0%
AACACACACTAAACCACATT+TGG + Chr5:9722955-9722974 None:intergenic 35.0%
AACATCCTTCCAAAGTAATC+TGG + Chr5:9724073-9724092 None:intergenic 35.0%
AATGTGGTTTAGTGTGTGTT+TGG - Chr5:9722955-9722974 MsG0580024793.01.T01:intron 35.0%
ACAATCCAAGTCAGATCATA+AGG + Chr5:9722606-9722625 None:intergenic 35.0%
AGAATACACTGCTACCATAT+TGG - Chr5:9724720-9724739 MsG0580024793.01.T01:intron 35.0%
AGAGGCTTAGATTCAGATAA+CGG - Chr5:9722120-9722139 MsG0580024793.01.T01:three_prime_UTR 35.0%
AGATGCACCAATTCATATCT+CGG + Chr5:9725694-9725713 None:intergenic 35.0%
ATTCAAATTCTTGTCGCAGA+AGG + Chr5:9725754-9725773 None:intergenic 35.0%
ATTCAGAGTGTGAAATGGAT+CGG - Chr5:9723799-9723818 MsG0580024793.01.T01:CDS 35.0%
ATTCATTACGATATACGGGA+AGG - Chr5:9723974-9723993 MsG0580024793.01.T01:CDS 35.0%
CATCATATAGTCAGGGATAT+AGG + Chr5:9725422-9725441 None:intergenic 35.0%
CATGATTCTCCGCAATATAA+GGG + Chr5:9722922-9722941 None:intergenic 35.0%
CGACAAAATTTGAATGGTCT+GGG - Chr5:9724034-9724053 MsG0580024793.01.T01:CDS 35.0%
GAACAAACCGAGATATGAAT+TGG - Chr5:9725684-9725703 MsG0580024793.01.T01:CDS 35.0%
GAATTCCAGATTACTTTGGA+AGG - Chr5:9724065-9724084 MsG0580024793.01.T01:CDS 35.0%
GATTAAGGATCTTGATGCAT+TGG - Chr5:9724110-9724129 MsG0580024793.01.T01:CDS 35.0%
GCTGAAGTCTATGATCAAAT+AGG + Chr5:9725058-9725077 None:intergenic 35.0%
GTCGGGTTAATTGATACAAT+TGG - Chr5:9724946-9724965 MsG0580024793.01.T01:intron 35.0%
TACTGTCTAGTGATAATAGC+TGG - Chr5:9724783-9724802 MsG0580024793.01.T01:intron 35.0%
TCAGTCTCTAATTGTATGTC+GGG - Chr5:9724929-9724948 MsG0580024793.01.T01:intron 35.0%
TCATGATTCTCCGCAATATA+AGG + Chr5:9722923-9722942 None:intergenic 35.0%
TGCAGCTGAAATTTCTTCAT+TGG - Chr5:9723858-9723877 MsG0580024793.01.T01:CDS 35.0%
TGGAACGGTGTAAATATTAG+TGG + Chr5:9722274-9722293 None:intergenic 35.0%
TGTGAAAGTAAGAAGCAAGT+TGG + Chr5:9721930-9721949 None:intergenic 35.0%
TGTTGCCGACAAAATTTGAA+TGG - Chr5:9724028-9724047 MsG0580024793.01.T01:CDS 35.0%
TTACTATACAATCAGCCTGT+AGG + Chr5:9724888-9724907 None:intergenic 35.0%
TTATCAGTACCATTACAAGC+AGG + Chr5:9723931-9723950 None:intergenic 35.0%
TTCACAACAAGACAACAATC+AGG + Chr5:9723491-9723510 None:intergenic 35.0%
TTTCTAGGTTCTTATAGGTC+AGG - Chr5:9725297-9725316 MsG0580024793.01.T01:CDS 35.0%
! AATTAGTGTCGCGGTTTTTA+TGG - Chr5:9722878-9722897 MsG0580024793.01.T01:intron 35.0%
! ATCTGTCGAGAAGCTTTTTA+TGG - Chr5:9725813-9725832 MsG0580024793.01.T01:CDS 35.0%
! CCAGACCATTCAAATTTTGT+CGG + Chr5:9724036-9724055 None:intergenic 35.0%
! GTAACTGCTGAGTTTTCTTT+CGG + Chr5:9724522-9724541 None:intergenic 35.0%
! GTTTAGAATATAGAGGTGGA+GGG + Chr5:9724284-9724303 None:intergenic 35.0%
! TTTTCATTAGATGGGAGTTC+AGG + Chr5:9725525-9725544 None:intergenic 35.0%
!! AATGGTACTGATAAGTTGGT+CGG - Chr5:9723937-9723956 MsG0580024793.01.T01:CDS 35.0%
!! ATGATGCTATTTCATGCAGA+TGG - Chr5:9725436-9725455 MsG0580024793.01.T01:CDS 35.0%
!! ATTTTTCCTTGTGATGGAAC+AGG - Chr5:9723695-9723714 MsG0580024793.01.T01:CDS 35.0%
!! GTCACAACAATCACTTTTCT+AGG + Chr5:9722516-9722535 None:intergenic 35.0%
!! TGATGCTATTTCATGCAGAT+GGG - Chr5:9725437-9725456 MsG0580024793.01.T01:CDS 35.0%
!! TTATGATCTGACTTGGATTG+TGG - Chr5:9722605-9722624 MsG0580024793.01.T01:intron 35.0%
!! TTCTAGCTTCAAGTCAGAAT+CGG - Chr5:9723148-9723167 MsG0580024793.01.T01:intron 35.0%
!!! AGTTTTTGGCTTTGAGCTTT+TGG + Chr5:9724427-9724446 None:intergenic 35.0%
!!! ATTTTCTGGCTAGTACTTCA+CGG - Chr5:9722171-9722190 MsG0580024793.01.T01:three_prime_UTR 35.0%
!!! GTTTTTGGCTTTGAGCTTTT+GGG + Chr5:9724426-9724445 None:intergenic 35.0%
!!! TCAACTTAGTTTTGCAACGT+TGG - Chr5:9725955-9725974 MsG0580024793.01.T01:five_prime_UTR 35.0%
AAGCATGACACCAAAGTGAT+TGG - Chr5:9725639-9725658 MsG0580024793.01.T01:CDS 40.0%
AAGGATCTTGATGCATTGGA+TGG - Chr5:9724114-9724133 MsG0580024793.01.T01:CDS 40.0%
ACATTCTGTTGAGTTTCCAC+CGG + Chr5:9722330-9722349 None:intergenic 40.0%
ACTTTCTTATACAGGCCTAC+AGG - Chr5:9724870-9724889 MsG0580024793.01.T01:intron 40.0%
AGGATCTTGATGCATTGGAT+GGG - Chr5:9724115-9724134 MsG0580024793.01.T01:CDS 40.0%
ATAATGATTGGGTGGGTGAT+AGG - Chr5:9724971-9724990 MsG0580024793.01.T01:intron 40.0%
ATCAGAAAATGCCCAGTTTG+TGG - Chr5:9722706-9722725 MsG0580024793.01.T01:intron 40.0%
CAAGTCAGAATCGGTGTATT+TGG - Chr5:9723157-9723176 MsG0580024793.01.T01:intron 40.0%
CCGACAAAATTTGAATGGTC+TGG - Chr5:9724033-9724052 MsG0580024793.01.T01:CDS 40.0%
CTGCATGCGAAAGAATGAAA+TGG + Chr5:9726054-9726073 None:intergenic 40.0%
GATTGTGAGAAAAGAGAAGC+TGG - Chr5:9723717-9723736 MsG0580024793.01.T01:CDS 40.0%
GCACCTAACTCCAGAAAAAT+AGG - Chr5:9725004-9725023 MsG0580024793.01.T01:intron 40.0%
GGTTCAAAAAGAAGGAGATG+AGG - Chr5:9723879-9723898 MsG0580024793.01.T01:CDS 40.0%
TCAAGATCCTTAATCCACTC+TGG + Chr5:9724105-9724124 None:intergenic 40.0%
TCAGAAAATGCCCAGTTTGT+GGG - Chr5:9722707-9722726 MsG0580024793.01.T01:intron 40.0%
TGAAAAGTCCTCACATACGT+TGG + Chr5:9722540-9722559 None:intergenic 40.0%
TGATGCGTCTTCATGCTTTA+AGG - Chr5:9722754-9722773 MsG0580024793.01.T01:intron 40.0%
TGGGCATCATGTGATGATAT+AGG - Chr5:9724611-9724630 MsG0580024793.01.T01:intron 40.0%
TGTCACGATCCCTTATATTG+CGG - Chr5:9722910-9722929 MsG0580024793.01.T01:intron 40.0%
TGTTCTAACAAACGGGAGTT+CGG - Chr5:9722347-9722366 MsG0580024793.01.T01:CDS 40.0%
TTACTTAAGCACCCACTACA+AGG - Chr5:9724663-9724682 MsG0580024793.01.T01:intron 40.0%
TTATGGGTCAATGTGACTAG+AGG + Chr5:9724689-9724708 None:intergenic 40.0%
TTCATTACTTCCACAGGATC+CGG + Chr5:9722432-9722451 None:intergenic 40.0%
TTGTGCCTTATGATCTGACT+TGG - Chr5:9722598-9722617 MsG0580024793.01.T01:intron 40.0%
TTTCAAGCGATGCATTTGAC+TGG - Chr5:9722555-9722574 MsG0580024793.01.T01:intron 40.0%
! AAGCAAGTTGGAGAAGAAGA+TGG + Chr5:9721918-9721937 None:intergenic 40.0%
! CGTTTAGAATATAGAGGTGG+AGG + Chr5:9724285-9724304 None:intergenic 40.0%
! CTCAGCAGTTACAGTTTTTG+TGG - Chr5:9724530-9724549 MsG0580024793.01.T01:intron 40.0%
! GTCGAGAAGCTTTTTATGGT+TGG - Chr5:9725817-9725836 MsG0580024793.01.T01:CDS 40.0%
! GTGCAGTTTACATTGATGAC+CGG - Chr5:9723998-9724017 MsG0580024793.01.T01:CDS 40.0%
! TCAAATTTTGTCGGCAACAC+TGG + Chr5:9724027-9724046 None:intergenic 40.0%
! TGCAGTTTACATTGATGACC+GGG - Chr5:9723999-9724018 MsG0580024793.01.T01:CDS 40.0%
!! AATGAAAAAGTGTTCGCTGC+AGG - Chr5:9725543-9725562 MsG0580024793.01.T01:CDS 40.0%
!! ATGGTACTGATAAGTTGGTC+GGG - Chr5:9723938-9723957 MsG0580024793.01.T01:CDS 40.0%
!! ATGTTTTGCTTTGGTGGTTG+CGG - Chr5:9724217-9724236 MsG0580024793.01.T01:CDS 40.0%
!! CTCTGAAGCTGTTTGTTCTA+CGG + Chr5:9722104-9722123 None:intergenic 40.0%
!! TTAGTGTGTGTTTGGTTCTG+TGG - Chr5:9722963-9722982 MsG0580024793.01.T01:intron 40.0%
!!! AATTTTGCGTGCTCTAGAAG+TGG - Chr5:9723408-9723427 MsG0580024793.01.T01:intron 40.0%
!!! GGTGTTGGCTTTTTGTAGTT+TGG + Chr5:9721894-9721913 None:intergenic 40.0%
AAATCCAAGCTGTACCCAGA+AGG + Chr5:9725120-9725139 None:intergenic 45.0%
AATTGTCGCCGGTGACTTAA+CGG + Chr5:9722154-9722173 None:intergenic 45.0%
ACTAGCCAGAAAATTGTCGC+CGG + Chr5:9722165-9722184 None:intergenic 45.0%
ACTTGGATTGTGGTTGAAGC+TGG - Chr5:9722615-9722634 MsG0580024793.01.T01:intron 45.0%
AGACACGAATGCACATATGC+TGG + Chr5:9725843-9725862 None:intergenic 45.0%
AGGAGAAGCTGATGTCTTCT+TGG - Chr5:9725782-9725801 MsG0580024793.01.T01:CDS 45.0%
ATGTCTATCCTCCCACAAAC+TGG + Chr5:9722721-9722740 None:intergenic 45.0%
ATGTTGACGATAAGCCAGAG+TGG - Chr5:9724088-9724107 MsG0580024793.01.T01:CDS 45.0%
CACAATCCTGTTCCATCACA+AGG + Chr5:9723704-9723723 None:intergenic 45.0%
CACCAAAGTGATTGGTGTAC+AGG - Chr5:9725647-9725666 MsG0580024793.01.T01:CDS 45.0%
CAGCTGCATCAACAGAATGA+AGG + Chr5:9723846-9723865 None:intergenic 45.0%
CGTAGAACAAACAGCTTCAG+AGG - Chr5:9722102-9722121 MsG0580024793.01.T01:three_prime_UTR 45.0%
GACCTGTACACCAATCACTT+TGG + Chr5:9725652-9725671 None:intergenic 45.0%
GCAACCACCAAAGCAAAACA+TGG + Chr5:9724218-9724237 None:intergenic 45.0%
GGATCTTGATGCATTGGATG+GGG - Chr5:9724116-9724135 MsG0580024793.01.T01:CDS 45.0%
GGGCACCTCCAAGAAAAATA+AGG + Chr5:9725901-9725920 None:intergenic 45.0%
GTACTCTTGAGCAAAGACAG+TGG + Chr5:9724162-9724181 None:intergenic 45.0%
GTGAGAAAAGAGAAGCTGGA+TGG - Chr5:9723721-9723740 MsG0580024793.01.T01:CDS 45.0%
TAATTGTAGAAGTAGGGCCC+TGG + Chr5:9725209-9725228 None:intergenic 45.0%
TATGTCTGAGAATGGGGGAA+GGG - Chr5:9725180-9725199 MsG0580024793.01.T01:intron 45.0%
TCATTAGATGGGAGTTCAGG+AGG + Chr5:9725522-9725541 None:intergenic 45.0%
TCTCTTACTTCTACTGCGTC+TGG + Chr5:9725619-9725638 None:intergenic 45.0%
TGCGCTTTCATTACTTCCAC+AGG + Chr5:9722438-9722457 None:intergenic 45.0%
TGCTTAATCAGCCTCGTTCT+CGG - Chr5:9722201-9722220 MsG0580024793.01.T01:three_prime_UTR 45.0%
TGTCTATCCTCCCACAAACT+GGG + Chr5:9722720-9722739 None:intergenic 45.0%
TTATGTCTGAGAATGGGGGA+AGG - Chr5:9725179-9725198 MsG0580024793.01.T01:intron 45.0%
TTGTGACACCAACGTATGTG+AGG - Chr5:9722529-9722548 MsG0580024793.01.T01:intron 45.0%
! AGCTGCATGCACTGATACTT+GGG - Chr5:9724592-9724611 MsG0580024793.01.T01:intron 45.0%
! AGGGTCAAAGTCGATTCTAG+AGG - Chr5:9723192-9723211 MsG0580024793.01.T01:intron 45.0%
! CAAGTTGGAGAAGAAGATGG+TGG + Chr5:9721915-9721934 None:intergenic 45.0%
! GTGGAAGTAATGAAAGCGCA+TGG - Chr5:9722438-9722457 MsG0580024793.01.T01:CDS 45.0%
! TAGCTGCATGCACTGATACT+TGG - Chr5:9724591-9724610 MsG0580024793.01.T01:intron 45.0%
! TTAGATTCAGATAACGGCGC+CGG - Chr5:9722126-9722145 MsG0580024793.01.T01:three_prime_UTR 45.0%
!! CGATAAGCCAGAGTGGATTA+AGG - Chr5:9724095-9724114 MsG0580024793.01.T01:CDS 45.0%
!! GAAATGGATCGGTGCTGTTT+CGG - Chr5:9723810-9723829 MsG0580024793.01.T01:CDS 45.0%
!! TGTTTTGCTTTGGTGGTTGC+GGG - Chr5:9724218-9724237 MsG0580024793.01.T01:CDS 45.0%
!! TTTCTGGAGTTAGGTGCTAC+TGG + Chr5:9725001-9725020 None:intergenic 45.0%
!! TTTGCTCAAGAGTACCTCTG+TGG - Chr5:9724167-9724186 MsG0580024793.01.T01:CDS 45.0%
!!! TTGGCTTTGAGCTTTTGGGT+GGG + Chr5:9724422-9724441 None:intergenic 45.0%
!!! TTTGGCTTTGAGCTTTTGGG+TGG + Chr5:9724423-9724442 None:intergenic 45.0%
!! AAAAAAAATAAAAAAAAAAG+GGG + Chr5:9723634-9723653 None:intergenic 5.0%
AAAATCGGAAGCCGAGAACG+AGG + Chr5:9722215-9722234 None:intergenic 50.0%
AACAAACGGGAGTTCGGTAG+TGG - Chr5:9722353-9722372 MsG0580024793.01.T01:CDS 50.0%
ACCTCTGTGGTAGAACCACT+AGG - Chr5:9724180-9724199 MsG0580024793.01.T01:CDS 50.0%
ACTTCTACTGCGTCTGGATC+TGG + Chr5:9725613-9725632 None:intergenic 50.0%
ATGGGTGATTGACCCTCCTT+TGG - Chr5:9725455-9725474 MsG0580024793.01.T01:CDS 50.0%
ATGTCTGAGAATGGGGGAAG+GGG - Chr5:9725181-9725200 MsG0580024793.01.T01:intron 50.0%
CCTCTGTGGTAGAACCACTA+GGG - Chr5:9724181-9724200 MsG0580024793.01.T01:CDS 50.0%
CGGGTTGTCCAAATAGTGCA+TGG - Chr5:9725341-9725360 MsG0580024793.01.T01:CDS 50.0%
CTTCTACTGCGTCTGGATCT+GGG + Chr5:9725612-9725631 None:intergenic 50.0%
CTTGATGCATTGGATGGGGA+TGG - Chr5:9724120-9724139 MsG0580024793.01.T01:CDS 50.0%
GAAAATGCCCAGTTTGTGGG+AGG - Chr5:9722710-9722729 MsG0580024793.01.T01:intron 50.0%
GATGGGACTGTGATGTCCAA+AGG + Chr5:9725474-9725493 None:intergenic 50.0%
GGACTGTGATGTCCAAAGGA+GGG + Chr5:9725470-9725489 None:intergenic 50.0%
GTAGAACCACTAGGGAGTTG+TGG - Chr5:9724189-9724208 MsG0580024793.01.T01:CDS 50.0%
GTGCAAGGTCCTGCTTGTAA+TGG - Chr5:9723919-9723938 MsG0580024793.01.T01:CDS 50.0%
TACACCGTTCCATTCACCTC+CGG - Chr5:9722282-9722301 MsG0580024793.01.T01:CDS 50.0%
TGAGGAAACCATGCCAATGC+CGG - Chr5:9723897-9723916 MsG0580024793.01.T01:CDS 50.0%
TGGATTGTGGTTGAAGCTGG+TGG - Chr5:9722618-9722637 MsG0580024793.01.T01:intron 50.0%
TTACAAGCAGGACCTTGCAC+CGG + Chr5:9723919-9723938 None:intergenic 50.0%
TTCCACCGGAACAGTGATTC+CGG + Chr5:9722316-9722335 None:intergenic 50.0%
! AGTCACCGGCGACAATTTTC+TGG - Chr5:9722157-9722176 MsG0580024793.01.T01:three_prime_UTR 50.0%
! GACGCCATGTTTTGCTTTGG+TGG - Chr5:9724211-9724230 MsG0580024793.01.T01:CDS 50.0%
! GATTTCCCAGGGGTATGTTC+CGG - Chr5:9725094-9725113 MsG0580024793.01.T01:intron 50.0%
! GGAGAAGAAGATGGTGGTGT+TGG + Chr5:9721909-9721928 None:intergenic 50.0%
! GTGACTAGAGGCCTTGTAGT+GGG + Chr5:9724677-9724696 None:intergenic 50.0%
! GTGGACGCCATGTTTTGCTT+TGG - Chr5:9724208-9724227 MsG0580024793.01.T01:CDS 50.0%
! TGCAACGTTGGCTGTCTTGT+GGG - Chr5:9725967-9725986 MsG0580024793.01.T01:five_prime_UTR 50.0%
! TGTGACTAGAGGCCTTGTAG+TGG + Chr5:9724678-9724697 None:intergenic 50.0%
! TTGCAACGTTGGCTGTCTTG+TGG - Chr5:9725966-9725985 MsG0580024793.01.T01:five_prime_UTR 50.0%
!! CTTTGAGCTTTTGGGTGGGT+TGG + Chr5:9724418-9724437 None:intergenic 50.0%
!! GTACTGATAAGTTGGTCGGG+TGG - Chr5:9723941-9723960 MsG0580024793.01.T01:CDS 50.0%
ACTTCCACAGGATCCGGATG+CGG + Chr5:9722426-9722445 None:intergenic 55.0%
AGAGTCGTGGTTGGGAGACA+CGG - Chr5:9722381-9722400 MsG0580024793.01.T01:CDS 55.0%
GCCATGGAGTGCGTTTCGAT+GGG + Chr5:9725491-9725510 None:intergenic 55.0%
GGGACTGTGATGTCCAAAGG+AGG + Chr5:9725471-9725490 None:intergenic 55.0%
TCCCATCGAAACGCACTCCA+TGG - Chr5:9725487-9725506 MsG0580024793.01.T01:CDS 55.0%
TGGCGAGTAGAGTCGTGGTT+GGG - Chr5:9722373-9722392 MsG0580024793.01.T01:CDS 55.0%
! CCCTAGTGGTTCTACCACAG+AGG + Chr5:9724184-9724203 None:intergenic 55.0%
!! TGGATCGGTGCTGTTTCGGT+TGG - Chr5:9723814-9723833 MsG0580024793.01.T01:CDS 55.0%
ACCATGCCAATGCCGGTGCA+AGG - Chr5:9723904-9723923 MsG0580024793.01.T01:CDS 60.0%
AGAAGGCCGGAACATACCCC+TGG + Chr5:9725103-9725122 None:intergenic 60.0%
CCAAGCTGTACCCAGAAGGC+CGG + Chr5:9725116-9725135 None:intergenic 60.0%
GAAGGCCGGAACATACCCCT+GGG + Chr5:9725102-9725121 None:intergenic 60.0%
GAGTCGTGGTTGGGAGACAC+GGG - Chr5:9722382-9722401 MsG0580024793.01.T01:CDS 60.0%
GGAGACACGGGATCCGGATT+CGG - Chr5:9722394-9722413 MsG0580024793.01.T01:CDS 60.0%
GGCCATGGAGTGCGTTTCGA+TGG + Chr5:9725492-9725511 None:intergenic 60.0%
GGGAGTTCAGGAGGAGAGTC+TGG + Chr5:9725513-9725532 None:intergenic 60.0%
GGGGTATGTTCCGGCCTTCT+GGG - Chr5:9725103-9725122 MsG0580024793.01.T01:intron 60.0%
GTGGAGGGACTCACAGAGCA+GGG + Chr5:9724269-9724288 None:intergenic 60.0%
GTGGCGAGTAGAGTCGTGGT+TGG - Chr5:9722372-9722391 MsG0580024793.01.T01:CDS 60.0%
GTTCCATTCACCTCCGGCAC+CGG - Chr5:9722288-9722307 MsG0580024793.01.T01:CDS 60.0%
TCAGGAGGAGAGTCTGGCCA+TGG + Chr5:9725507-9725526 None:intergenic 60.0%
TGGCGTCCACAACTCCCTAG+TGG + Chr5:9724198-9724217 None:intergenic 60.0%
TGGTTGGGAGACACGGGATC+CGG - Chr5:9722388-9722407 MsG0580024793.01.T01:CDS 60.0%
TTGTCGGCAACACTGGTGCC+CGG + Chr5:9724020-9724039 None:intergenic 60.0%
! AGGGGTATGTTCCGGCCTTC+TGG - Chr5:9725102-9725121 MsG0580024793.01.T01:intron 60.0%
! GGTAGTGGCGAGTAGAGTCG+TGG - Chr5:9722368-9722387 MsG0580024793.01.T01:CDS 60.0%
! GGTGCCGGAGGTGAATGGAA+CGG + Chr5:9722289-9722308 None:intergenic 60.0%
!! ACCTTGCACCGGCATTGGCA+TGG + Chr5:9723908-9723927 None:intergenic 60.0%
!!! GCTTTTGGGTGGGTTGGCGT+TGG + Chr5:9724412-9724431 None:intergenic 60.0%
ACAGGATCCGGATGCGGCCA+TGG + Chr5:9722420-9722439 None:intergenic 65.0%
ACGGGATCCGGATTCGGCCA+TGG - Chr5:9722400-9722419 MsG0580024793.01.T01:CDS 65.0%
ATGGCCGCATCCGGATCCTG+TGG - Chr5:9722419-9722438 MsG0580024793.01.T01:CDS 65.0%
CCGGCCTTCTGGGTACAGCT+TGG - Chr5:9725113-9725132 MsG0580024793.01.T01:intron 65.0%
CGCCGGAATCACTGTTCCGG+TGG - Chr5:9722311-9722330 MsG0580024793.01.T01:CDS 65.0%
CGGAACAGTGATTCCGGCGC+CGG + Chr5:9722310-9722329 None:intergenic 65.0%
GATGCGGCCATGGCCGAATC+CGG + Chr5:9722410-9722429 None:intergenic 65.0%
GATTCGGCCATGGCCGCATC+CGG - Chr5:9722410-9722429 MsG0580024793.01.T01:CDS 65.0%
GGTGGAGGGACTCACAGAGC+AGG + Chr5:9724270-9724289 None:intergenic 65.0%
! CGGCGCCGGAATCACTGTTC+CGG - Chr5:9722308-9722327 MsG0580024793.01.T01:CDS 65.0%
! GCAGGACCTTGCACCGGCAT+TGG + Chr5:9723913-9723932 None:intergenic 65.0%
!! AGAATGGGGGAAGGGGTGCC+AGG - Chr5:9725188-9725207 MsG0580024793.01.T01:intron 65.0%
!! GAATGGGGGAAGGGGTGCCA+GGG - Chr5:9725189-9725208 MsG0580024793.01.T01:intron 65.0%
CGCCGGCGCCGTTAAGTCAC+CGG - Chr5:9722143-9722162 MsG0580024793.01.T01:three_prime_UTR 70.0%
CGCCGGTGACTTAACGGCGC+CGG + Chr5:9722148-9722167 None:intergenic 70.0%
!! AGTGATTCCGGCGCCGGTGC+CGG + Chr5:9722304-9722323 None:intergenic 70.0%
! GCGCCGGTGCCGGAGGTGAA+TGG + Chr5:9722294-9722313 None:intergenic 75.0%
!! TTCACCTCCGGCACCGGCGC+CGG - Chr5:9722294-9722313 MsG0580024793.01.T01:CDS 75.0%
!!! GATTCCGGCGCCGGTGCCGG+AGG + Chr5:9722301-9722320 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 9721890 9726078 9721890 ID=MsG0580024793.01;Name=MsG0580024793.01
Chr5 mRNA 9721890 9726078 9721890 ID=MsG0580024793.01.T01;Parent=MsG0580024793.01;Name=MsG0580024793.01.T01;_AED=0.27;_eAED=0.27;_QI=176|1|1|1|1|1|3|377|504
Chr5 exon 9721890 9722513 9721890 ID=MsG0580024793.01.T01:exon:19639;Parent=MsG0580024793.01.T01
Chr5 exon 9723694 9724251 9723694 ID=MsG0580024793.01.T01:exon:19638;Parent=MsG0580024793.01.T01
Chr5 exon 9725193 9726078 9725193 ID=MsG0580024793.01.T01:exon:19637;Parent=MsG0580024793.01.T01
Chr5 five_prime_UTR 9725903 9726078 9725903 ID=MsG0580024793.01.T01:five_prime_utr;Parent=MsG0580024793.01.T01
Chr5 CDS 9725193 9725902 9725193 ID=MsG0580024793.01.T01:cds;Parent=MsG0580024793.01.T01
Chr5 CDS 9723694 9724251 9723694 ID=MsG0580024793.01.T01:cds;Parent=MsG0580024793.01.T01
Chr5 CDS 9722267 9722513 9722267 ID=MsG0580024793.01.T01:cds;Parent=MsG0580024793.01.T01
Chr5 three_prime_UTR 9721890 9722266 9721890 ID=MsG0580024793.01.T01:three_prime_utr;Parent=MsG0580024793.01.T01
Gene Sequence

>MsG0580024793.01.T01

ATGAAGCTCTCAACATTACAACAAAGTTACATCAACCGTAGAACAAACAGCTTCAGAGGCTTAGATTCAGATAACGGCGCCGGCGCCGTTAAGTCACCGGCGACAATTTTCTGGCTAGTACTTCACGGTGTTTGCTGCTTAATCAGCCTCGTTCTCGGCTTCCGATTTTCTCGTCTTGTTTTCTTCTTTCTCTTTTCAACTTCATCCACTAATATTTACACCGTTCCATTCACCTCCGGCACCGGCGCCGGAATCACTGTTCCGGTGGAAACTCAACAGAATGTTCTAACAAACGGGAGTTCGGTAGTGGCGAGTAGAGTCGTGGTTGGGAGACACGGGATCCGGATTCGGCCATGGCCGCATCCGGATCCTGTGGAAGTAATGAAAGCGCATGGAATAATCTCTAGAGTTCAAAATGAACAGAGATTGTTGTTTGGAGTGAAGAACCCTAGAAAAGTGATTGTTGTGACACCAACGTATGTGAGGACTTTTCAAGCGATGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTGCCTTATGATCTGACTTGGATTGTGGTTGAAGCTGGTGGTGTTACTAATGAGACTGCTTCAATTATTGGAAAATCTGGATTAAGGATTATTCATGTTGGGTTTAATCAGAAAATGCCCAGTTTGTGGGAGGATAGACATAAAGTTGAATCTTTGATGCGTCTTCATGCTTTAAGGATTGTGAGAAAAGAGAAGCTGGATGGAATTGTGATGTTTGCTGATGATAGTAATATGCATAATATGGAGCTGTTTAATGAAATTCAGAGTGTGAAATGGATCGGTGCTGTTTCGGTTGGAATACTCCTTCATTCTGTTGATGCAGCTGAAATTTCTTCATTGGTTCAAAAAGAAGGAGATGAGGAAACCATGCCAATGCCGGTGCAAGGTCCTGCTTGTAATGGTACTGATAAGTTGGTCGGGTGGCACACCTTCAATTCATTACGATATACGGGAAGGCGTGCAGTTTACATTGATGACCGGGCACCAGTGTTGCCGACAAAATTTGAATGGTCTGGGTTTGTGTTGAATTCCAGATTACTTTGGAAGGATGTTGACGATAAGCCAGAGTGGATTAAGGATCTTGATGCATTGGATGGGGATGGTGAGAAGATAGAGAGTCCACTGTCTTTGCTCAAGAGTACCTCTGTGGTAGAACCACTAGGGAGTTGTGGACGCCATGTTTTGCTTTGGTGGTTGCGGGTTGAAGCTCGCACAGACAGCAAATTCCCTGCTCTATGGGTGATTGACCCTCCTTTGGACATCACAGTCCCATCGAAACGCACTCCATGGCCAGACTCTCCTCCTGAACTCCCATCTAATGAAAATGAAAAAGTGTTCGCTGCAGGCACAGAAGAGCATTCGAACACGCACACTACAAAGACTAAAACACCCAGATCCAGACGCAGTAGAAGTAAGAGAAAGCATGACACCAAAGTGATTGGTGTACAGGTCTCTACACATTCTGAACAAACCGAGATATGA
Protein sequence

>MsG0580024793.01.T01

MKLSTLQQSYINRRTNSFRGLDSDNGAGAVKSPATIFWLVLHGVCCLISLVLGFRFSRLVFFFLFSTSSTNIYTVPFTSGTGAGITVPVETQQNVLTNGSSVVASRVVVGRHGIRIRPWPHPDPVEVMKAHGIISRVQNEQRLLFGVKNPRKVIVVTPTYVRTFQAMHLTGVMHSLMLVPYDLTWIVVEAGGVTNETASIIGKSGLRIIHVGFNQKMPSLWEDRHKVESLMRLHALRIVRKEKLDGIVMFADDSNMHNMELFNEIQSVKWIGAVSVGILLHSVDAAEISSLVQKEGDEETMPMPVQGPACNGTDKLVGWHTFNSLRYTGRRAVYIDDRAPVLPTKFEWSGFVLNSRLLWKDVDDKPEWIKDLDALDGDGEKIESPLSLLKSTSVVEPLGSCGRHVLLWWLRVEARTDSKFPALWVIDPPLDITVPSKRTPWPDSPPELPSNENEKVFAAGTEEHSNTHTTKTKTPRSRRSRSKRKHDTKVIGVQVSTHSEQTEI*