AlfalfaGEDB | MsG0580028449.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028449.01

KEGG: -
GO: -
PFAM: PF00628 PF05641 PF13839 PF14416 PF16135

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028449.01.T01	XP_024640704.2	94.996	1139	35	1	1	1117	1	1139	0	2231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028449.01.T01	Q9LUZ6	55.742	357	137	4	1140	1483	54	402	6.91E-144	449

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580028449.01	0.809185	2.144473e-50	1.250634e-47
MsG0180000001.01	MsG0580028449.01	0.819212	1.307908e-52	1.000157e-49
MsG0180001117.01	MsG0580028449.01	0.824915	6.230704e-54	5.595632e-51
MsG0180001237.01	MsG0580028449.01	0.803319	3.689084e-49	1.848140e-46
MsG0180001294.01	MsG0580028449.01	0.807906	4.020914e-50	2.266900e-47
MsG0180003337.01	MsG0580028449.01	0.806701	7.237293e-50	3.954707e-47
MsG0180004989.01	MsG0580028449.01	0.847844	8.942135e-60	1.610104e-56
MsG0280006864.01	MsG0580028449.01	0.805414	1.350717e-49	7.141540e-47
MsG0280007071.01	MsG0580028449.01	0.802289	6.020880e-49	2.938249e-46
MsG0280007196.01	MsG0580028449.01	0.815075	1.113171e-51	7.598586e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028449.01.T01	MTR_5g071340	94.996	1139	35	1	1	1117	1	1139	0.0	2231
MsG0580028449.01.T01	MTR_3g464550	46.738	1119	504	22	21	1117	11	1059	0.0	958
MsG0580028449.01.T01	MTR_5g071350	92.388	381	15	2	1117	1483	21	401	0.0	717
MsG0580028449.01.T01	MTR_3g464570	62.663	383	121	5	1113	1483	6	378	3.27e-169	512
MsG0580028449.01.T01	MTR_5g069320	73.978	269	31	4	1207	1474	156	386	1.53e-123	391
MsG0580028449.01.T01	MTR_3g464570	62.766	282	85	4	1214	1483	1	274	3.13e-122	382
MsG0580028449.01.T01	MTR_5g024390	43.387	431	205	9	657	1062	3	419	3.20e-111	358
MsG0580028449.01.T01	MTR_5g024500	42.923	431	207	9	657	1062	3	419	5.69e-110	355
MsG0580028449.01.T01	MTR_2g015720	49.587	363	142	8	1134	1481	22	358	8.73e-110	352
MsG0580028449.01.T01	MTR_7g109640	44.056	429	220	9	642	1062	371	787	1.43e-108	364

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028449.01.T01	AT5G58610	37.489	1115	598	30	12	1106	14	1049	0.0	665
MsG0580028449.01.T01	AT5G58610	38.211	1073	567	29	12	1064	14	1010	0.0	663
MsG0580028449.01.T01	AT5G58610	38.211	1073	567	29	12	1064	14	1010	0.0	663
MsG0580028449.01.T01	AT5G58610	37.443	1103	591	30	24	1106	17	1040	0.0	652
MsG0580028449.01.T01	AT5G58610	37.443	1103	591	30	24	1106	17	1040	0.0	652
MsG0580028449.01.T01	AT5G58610	36.627	1103	574	32	24	1106	17	1014	0.0	618
MsG0580028449.01.T01	AT5G58610	36.627	1103	574	32	24	1106	17	1014	0.0	618
MsG0580028449.01.T01	AT5G58610	37.081	1014	542	29	12	1005	14	951	0.0	594
MsG0580028449.01.T01	AT5G58610	36.941	1007	539	29	24	1010	17	947	0.0	580
MsG0580028449.01.T01	AT5G58610	36.017	969	524	29	24	972	17	909	1.68e-168	530

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Find 328 sgRNAs with CRISPR-Local

Find 920 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGAAGTATAAAACTT+TGG	0.389264	5:-80641165	None:intergenic
AAAATTCAAGAGACTGAGGA+TGG	0.585537	5:+80642442	MsG0580028449.01.T01:CDS
AAACCTTGGCTCATTTGGGG+TGG	0.502467	5:-80641276	None:intergenic
AAATAAAATTCAAGAGACTG+AGG	0.644178	5:+80642438	MsG0580028449.01.T01:CDS
AAATCGAAGTATAAAACTTT+GGG	0.328364	5:-80641164	None:intergenic
AAATGAAGAATTGATTAGTG+TGG	0.598410	5:+80644282	MsG0580028449.01.T01:CDS
AAATTGCCTGAAATAACACA+TGG	0.627656	5:-80651937	None:intergenic
AACAGATTTGGTATGATATT+AGG	0.340134	5:+80640461	MsG0580028449.01.T01:CDS
AACATCTGTTAGCAGAAGGA+TGG	0.542192	5:+80641445	MsG0580028449.01.T01:CDS
AACATCTTGTTTATCTTGGA+TGG	0.419268	5:+80641070	MsG0580028449.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACATCTGTTAGCAGA+AGG	+	Chr5:80641441-80641460	MsG0580028449.01.T01:CDS	30.0%
AAAATATGTCAGCCTAGTTA+GGG	+	Chr5:80652392-80652411	MsG0580028449.01.T01:intron	30.0%
AAAATGCTATAAACACCCTT+CGG	+	Chr5:80648695-80648714	MsG0580028449.01.T01:intron	30.0%
AAACAACAAGAAGAAATCCA+AGG	-	Chr5:80647309-80647328	None:intergenic	30.0%
AAATTAAATCGGTGAAGAAC+GGG	+	Chr5:80648924-80648943	MsG0580028449.01.T01:intron	30.0%
AAATTGCCTGAAATAACACA+TGG	-	Chr5:80651940-80651959	None:intergenic	30.0%
AACAACAAGAAGAAATCCAA+GGG	-	Chr5:80647308-80647327	None:intergenic	30.0%
AAGAATTGCTTCTTTACTTG+TGG	+	Chr5:80653056-80653075	MsG0580028449.01.T01:intron	30.0%
AAGACATATAGTACTACTTG+TGG	-	Chr5:80646006-80646025	None:intergenic	30.0%
AAGTAGGAACTTTAGTGTTT+AGG	+	Chr5:80645480-80645499	MsG0580028449.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	80639317	80653945	80639317	ID=MsG0580028449.01;Name=MsG0580028449.01
Chr5	mRNA	80639317	80653945	80639317	ID=MsG0580028449.01.T01;Parent=MsG0580028449.01;Name=MsG0580028449.01.T01;_AED=0.26;_eAED=0.26;_QI=0\|0\|0\|0.92\|1\|1\|14\|0\|1483
Chr5	exon	80639317	80639409	80639317	ID=MsG0580028449.01.T01:exon:32925;Parent=MsG0580028449.01.T01
Chr5	exon	80639956	80642241	80639956	ID=MsG0580028449.01.T01:exon:32926;Parent=MsG0580028449.01.T01
Chr5	exon	80642382	80642499	80642382	ID=MsG0580028449.01.T01:exon:32927;Parent=MsG0580028449.01.T01
Chr5	exon	80642615	80642700	80642615	ID=MsG0580028449.01.T01:exon:32928;Parent=MsG0580028449.01.T01
Chr5	exon	80643131	80643375	80643131	ID=MsG0580028449.01.T01:exon:32929;Parent=MsG0580028449.01.T01
Chr5	exon	80644228	80644314	80644228	ID=MsG0580028449.01.T01:exon:32930;Parent=MsG0580028449.01.T01
Chr5	exon	80644420	80644519	80644420	ID=MsG0580028449.01.T01:exon:32931;Parent=MsG0580028449.01.T01
Chr5	exon	80644798	80645005	80644798	ID=MsG0580028449.01.T01:exon:32932;Parent=MsG0580028449.01.T01
Chr5	exon	80645215	80645342	80645215	ID=MsG0580028449.01.T01:exon:32933;Parent=MsG0580028449.01.T01
Chr5	exon	80650032	80650297	80650032	ID=MsG0580028449.01.T01:exon:32934;Parent=MsG0580028449.01.T01
Chr5	exon	80650567	80650702	80650567	ID=MsG0580028449.01.T01:exon:32935;Parent=MsG0580028449.01.T01
Chr5	exon	80651499	80651677	80651499	ID=MsG0580028449.01.T01:exon:32936;Parent=MsG0580028449.01.T01
Chr5	exon	80651817	80651975	80651817	ID=MsG0580028449.01.T01:exon:32937;Parent=MsG0580028449.01.T01
Chr5	exon	80653585	80653945	80653585	ID=MsG0580028449.01.T01:exon:32938;Parent=MsG0580028449.01.T01
Chr5	CDS	80639317	80639409	80639317	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80639956	80642241	80639956	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80642382	80642499	80642382	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80642615	80642700	80642615	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80643131	80643375	80643131	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80644228	80644314	80644228	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80644420	80644519	80644420	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80644798	80645005	80644798	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80645215	80645342	80645215	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80650032	80650297	80650032	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80650567	80650702	80650567	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80651499	80651677	80651499	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80651817	80651975	80651817	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01
Chr5	CDS	80653585	80653945	80653585	ID=MsG0580028449.01.T01:cds;Parent=MsG0580028449.01.T01

Gene Sequence

>MsG0580028449.01.T01

ATGGAGGTTGATGGTGATAAGAGTGATAATGGAAATCGAAAAAGGAAAAGAGGGTTATTGAAAAGAAAGCTTCTTGTCAATGAAAAAGTTGAGTTGAGGAGTTTGGAAGATGGTTTTCTGGGATCATGGCATCCAGGGAAAATTATCCGCTGTGGGAGGAAGACGCGTTATGTCAGATATGACAATATCCTTGATGATGAAGAATCAGATTATCTTATTGAAGTGGTGGATGTTTCTAATGTTTTGGATGGTGTTAATTCTTCATCTGCTTTAGATTGTGGCTATCAGCGAGGCCTGATTAGACCGTTACCGCCTCCAATTGAGTTACGGATAAAGGATCTTCCATTTGGACAATGTGTTGATGTGAAATATCAGGATGCTTGGTGGGAAGGTGTGATATTCGATCGCTGCGATGGAATGAAGGATAGGAGCATATTCTTCCCAGATTTAGGTGATGAAATGAAGGTTGGAGTTAAACAACTGAGGATCACTCAGGATTGGGATGAATCAACTGAGAATTGGTTACCAAGAGGGAAATGGGTTTTTCTTGAGTTGTTTGAGGAGTGTGAGAGGGTATCCTATGTTGCAGTCTCAGTGAAACAGATTTGGTATGATATTAGGATGAGAAAGGATTTTGCTGAAACCATTAGAGAATGGACTTGTAATGTGAAGGAATTGTGGAGAGACCTTGTTGTTGAGGTAATTGGTGATTACTATACCCTCACATTAAGCGAAGTTCGCCCCGCCTTAAACCTTCCAAACAATTTACTCAAAGGAGAGTCATTTGAACCAACTGATAATGTTCATTGTGATGCTGCTAATCAAGGTGATGCATTTGGTTCTGACATTGGAATATCTGATAAGCTTGAGGAAAACGCCGACTCCTCAAACTTGTTGGTTACTGATCAAAACTGTGGCAGCACAAGCATCATTCCTTTGGTGGATGAGGAATTTGAGAAGGAAATTCTTTTACATGAAGAGCTTGAATCAGATAAAAATCAAATGGTGGATGTGGAATTTGAGAAGGACATTCTTTTACATGAAGAGTTTGAATCAGATAAAAATCGAAAACGGAGACGTTCTAAGTCCATAATTTGGAAGCCTTTGGAACTGTCTGAAGTTGAATTCTGTCCTGAAGTTATTGATGAGTATGCACTTGGATGTAGGAGCAAGACGGTTCGAGAGCTTTTGAAGACGAAAGTAAGAAAACATCTTGTTTATCTTGGATGGACAATTGAATGGACCGAAAACAATACTCCTCCACATAGACGATACCGGTACAAGTCTCCGGATAAACTAAACCCAAAGTTTTATACTTCGATTTTTCAAGTTACTAAAATTTTGCAAGAGGATCCTAACATGAACTCTGGACCACCTCAAATTGACAGCAATCTTTCACATCTGCTCTCTGATCCACCCCAAATGAGCCAAGGTTTCAACGTTTGTCCTCCAACCAATGAACCTTCTCCAGTTAAATTTCAAGTTGAACCAGAATTTTGTCCTCTAGCTATCGTGAAATACTACTGTCACTCATTAGAGAGAAACTCGGCTGATAAGAGAAAGTGGAAATTGAAGGCGAAAAAACATCTGTTAGCAGAAGGATGGATGTTTGACTACCCAACTGAAAGAAGGAAGACTACTTTGTACAAGTCTCCACAAGATCAGTGTTTAGGCACACTTCAAGGTGCATGCAGACTATACCTTAAAGAAAAGATTCCCGAATGGACTAATTCTGATCATGGTGGTGATGATGATCTACTTTCGAGTGTGTCCCAATTGCTTCAAAAAGAGCCTGAATTACGTACTATAGATGGTTCACCACCAACTGCAAAGAGAAACCATAAACGCGCAAGGACTTCAAAGGCTAGCACACAAAAGGACTTAGAGAGTGAAGTATTTACCAGGGTGCTAAGATCAAGCAAAAGGGTGCTGAAGGTTTTGGGTTCATCATATCAAAAGCCTCAAAATATTCTGTCTTGGTTAATAGATTGCAACATTGTGTTGCCAAAGTACAAGGTCTTTTACTGGGAAACCGAAGGAGGGAACTCTCCTACGTTTGAAGGAAGGATAACTCGCGAAGGAATTATGTGCACCTGTTGTCAGAATCTATATGGACTCAGCGGCTTCGCAAACCATGCTGGTGGAAGCAGTAACTGCAGGCCTTCGGCTTGTATATTTTTGAAGGATGGTAGGTCACTGTTAGATTGCATGAGGGAAGTAATGCAAGATCACAGGACGAGAGAAATTACGGAGAAACAGCACAATGATCTGTTTGAAGGTGAAAATGACAACATTTGTTCTGTTTGTAACTACGGTGGTGAACTCATTTTATGCGACCAATGCCCCTCGGCGTATCATAAGAATTGTCTTAATTTGGAGGGCATCCCTGATGGCGATTGGTTTTGTCCATCATGCCGTTGCGGGATTTGCGGCCAAAATAAAATTCAAGAGACTGAGGATGGACACTTTCTTACTTGCATTCAGTGTGAACATAAATATCATGTTGAGTGCCTCAGAAATGGAGAAAAAGATGATTCAAGACGATATATGAAAAATTGGTTCTGTGGAGAAAAGTGTGAACAGGTCTATACGGGGCTCCAAAATCTATTAGGAAAGCCAGTTTTAGTGGGGGCGGATAATCTAACTTGGATATTGGTGAAGTATGTCAACTCTGAGACTTGCGGTGTTGGCGGTGCTGAAAGTGACTTAGTGGCGGAGAATTACAGCAAACTGAGTGTTGCACTCTCGGTGATGCATGAATGTTTTGAGCCCCTACATAACCCTTTCTCTAGCAGAGATATCGTGGAGGACGTTATATTCAACCAAAGGTCTGAGCTCAATCGACTAAACTTCCAGGGTTTCTATACTGTACTTCTTGAGAGAAATGAAGAATTGATTAGTGTGGCGACTGTGAGGATATTTGGAGAGAAGATAGCGGAAGTGCCCCTCGTAGGTACCAGATTTCAATACAGACGACTTGGAATGTGCCGCGTTTTAATGGATGAGCTCGAAAAGAAGCTAAAGCAGCTGGGCGTGGAACGACTAGTCTTGCCTGCTGTTCCTGGTGTACTAGACACATGGACGAATTCTTTTGGTTTTGAGCAGATGACGAATTTTGAGAGGTCACAGTTTCTGGACTATTCTTTCCTAGACTTTCAAGGAACTGTCATGTGTCAGAAACTGTTGACAAGATTTCCATCTCCGGAATCGGTTGTAACAAGAGACGCGACTCCAAAACAACAAGATGGTAACTTCTCTGTTAAATGTAAAATTAATTTTGAAAAGGCTAGTCCAGTATCTGAAGTGGATCAAGCAGAAGGGATTAGCAAAAGAGGAATGATGGATCTACAATGCCAAATAGCTTCTTCTTTTCATTATCATTATCATCATCATCATCATGAACAAGTTTATCATAAAAAACCCAGTTTGAAAGCAAACAATAATCAAAGTAGTTGTGCATTGTTTGTTGGAAGTTGGGTTTATGATGAAAGTTACCCTTTTTATCAATCTTCTAGCTGTGATATCATAGACCCAGAATTTAATTGTCAAATGAATGGTCGTCCTGATTCTGATTACCTTAAATATCGTTGGAAACCACTCAATTGTGAGCTCCCAAGGTTCAATGGAGTTGAGTTTTTGTTGAAGATGAAAGGAAAAAGTGTGATGTTTGTTGGTGATTCGTTAGGAAGGAATCAATGGCAGTCTTTGATTTGTATGATATCTGCTGCAGCACCTAATGTGGAGACACAATTGGACTATGGTGTGAAAATTTCATTTCATAGAGCTCCTTATTTAGTAGATGTTGATGTGGTCCAAGGGAAAAGAATTTTAAGACTTGATGAGGCAGATAAGAATGGTGACACATGGAAGAATGTTGATGTGCTGTTGTTCAACACAGGACATTGGTGGAGTCATCAAGGATCACTTCAAGGGTGGGATTATGTAGAATTAGGAGGGAATTTTTACCCTGATATGGATCGTTTGGTAGCTTTGGAAAGAGGTATGAAAACATGGGCTAATTGGGTGGATGCCAATATTGACAGAAGTAGAACCCATGTGTTATTTCAGGCAATTTCTCCCACACATTATGACGAAAATGAATGGAATTCAGCTGTTGGTAGGACAACAAGTGTAACGACGACAAAGAATTGCTATGGTGAAACAGCACCAATCAGTGGCACAACAACAGACTTTGGAGGAGGAGAAACATACACGGATCAACAAATGAGAGTAGTTAATATGGTGATTCGAGAAATGCGCGATCCTGCGTATCTTCTTGACATCACAATGTTATCAGAAATGAGGAAAGATGGACACCCTTCCATTTACAGTGGTGAATTGAATTCCCAGCAGAAAGCTGACCCTGATCACTTAGCTGATTGTAGCCATTGGTGTCTTCCTGGTTTGCCTGATACTTGGAATCAACTGCTCTATGTTGCTTTATTCTATTGA

Protein sequence

>MsG0580028449.01.T01

MEVDGDKSDNGNRKRKRGLLKRKLLVNEKVELRSLEDGFLGSWHPGKIIRCGRKTRYVRYDNILDDEESDYLIEVVDVSNVLDGVNSSSALDCGYQRGLIRPLPPPIELRIKDLPFGQCVDVKYQDAWWEGVIFDRCDGMKDRSIFFPDLGDEMKVGVKQLRITQDWDESTENWLPRGKWVFLELFEECERVSYVAVSVKQIWYDIRMRKDFAETIREWTCNVKELWRDLVVEVIGDYYTLTLSEVRPALNLPNNLLKGESFEPTDNVHCDAANQGDAFGSDIGISDKLEENADSSNLLVTDQNCGSTSIIPLVDEEFEKEILLHEELESDKNQMVDVEFEKDILLHEEFESDKNRKRRRSKSIIWKPLELSEVEFCPEVIDEYALGCRSKTVRELLKTKVRKHLVYLGWTIEWTENNTPPHRRYRYKSPDKLNPKFYTSIFQVTKILQEDPNMNSGPPQIDSNLSHLLSDPPQMSQGFNVCPPTNEPSPVKFQVEPEFCPLAIVKYYCHSLERNSADKRKWKLKAKKHLLAEGWMFDYPTERRKTTLYKSPQDQCLGTLQGACRLYLKEKIPEWTNSDHGGDDDLLSSVSQLLQKEPELRTIDGSPPTAKRNHKRARTSKASTQKDLESEVFTRVLRSSKRVLKVLGSSYQKPQNILSWLIDCNIVLPKYKVFYWETEGGNSPTFEGRITREGIMCTCCQNLYGLSGFANHAGGSSNCRPSACIFLKDGRSLLDCMREVMQDHRTREITEKQHNDLFEGENDNICSVCNYGGELILCDQCPSAYHKNCLNLEGIPDGDWFCPSCRCGICGQNKIQETEDGHFLTCIQCEHKYHVECLRNGEKDDSRRYMKNWFCGEKCEQVYTGLQNLLGKPVLVGADNLTWILVKYVNSETCGVGGAESDLVAENYSKLSVALSVMHECFEPLHNPFSSRDIVEDVIFNQRSELNRLNFQGFYTVLLERNEELISVATVRIFGEKIAEVPLVGTRFQYRRLGMCRVLMDELEKKLKQLGVERLVLPAVPGVLDTWTNSFGFEQMTNFERSQFLDYSFLDFQGTVMCQKLLTRFPSPESVVTRDATPKQQDGNFSVKCKINFEKASPVSEVDQAEGISKRGMMDLQCQIASSFHYHYHHHHHEQVYHKKPSLKANNNQSSCALFVGSWVYDESYPFYQSSSCDIIDPEFNCQMNGRPDSDYLKYRWKPLNCELPRFNGVEFLLKMKGKSVMFVGDSLGRNQWQSLICMISAAAPNVETQLDYGVKISFHRAPYLVDVDVVQGKRILRLDEADKNGDTWKNVDVLLFNTGHWWSHQGSLQGWDYVELGGNFYPDMDRLVALERGMKTWANWVDANIDRSRTHVLFQAISPTHYDENEWNSAVGRTTSVTTTKNCYGETAPISGTTTDFGGGETYTDQQMRVVNMVIREMRDPAYLLDITMLSEMRKDGHPSIYSGELNSQQKADPDHLADCSHWCLPGLPDTWNQLLYVALFY*