AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031924.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031924.01.T01 MTR_1g116470 91.837 245 16 1 106 346 1653 1897 4.11e-143 445
MsG0680031924.01.T01 MTR_1g116470 91.837 245 16 1 106 346 1658 1902 4.70e-143 445
MsG0680031924.01.T01 MTR_3g075180 60.331 242 92 1 106 343 1664 1905 4.09e-94 307
MsG0680031924.01.T01 MTR_7g005950 48.148 243 118 3 106 340 1706 1948 8.11e-67 228
MsG0680031924.01.T01 MTR_3g096200 45.306 245 127 2 106 343 1684 1928 2.52e-64 221
MsG0680031924.01.T01 MTR_2g061380 44.490 245 129 2 106 343 1696 1940 4.25e-63 218
MsG0680031924.01.T01 MTR_8g093630 43.673 245 131 2 106 343 1694 1938 7.92e-62 214
MsG0680031924.01.T01 MTR_1g101740 42.672 232 126 3 120 344 161 392 7.38e-61 200
MsG0680031924.01.T01 MTR_1g116370 47.934 242 119 2 106 340 1690 1931 2.43e-58 204
MsG0680031924.01.T01 MTR_3g047390 44.398 241 127 2 106 339 1660 1900 1.06e-56 199
MsG0680031924.01.T01 MTR_2g072160 39.749 239 137 2 107 338 1704 1942 4.89e-55 194
MsG0680031924.01.T01 MTR_3g075180 53.757 173 76 1 106 274 1666 1838 7.40e-55 194
MsG0680031924.01.T01 MTR_4g078220 41.250 240 134 2 107 339 1519 1758 1.69e-49 178
MsG0680031924.01.T01 MTR_2g013580 40.167 239 136 2 110 341 1535 1773 4.12e-49 177
MsG0680031924.01.T01 MTR_7g005950 43.605 172 89 3 106 269 1706 1877 1.01e-35 138
MsG0680031924.01.T01 MTR_2g090375 33.750 240 110 3 107 339 1509 1706 1.03e-32 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031924.01.T01 AT3G07160 73.469 245 61 1 106 346 1646 1890 2.42e-106 342
MsG0680031924.01.T01 AT3G07160 73.469 245 61 1 106 346 1648 1892 2.60e-106 342
MsG0680031924.01.T01 AT3G07160 73.469 245 61 1 106 346 1648 1892 2.60e-106 342
MsG0680031924.01.T01 AT2G36850 59.091 242 95 1 106 343 1660 1901 4.78e-86 284
MsG0680031924.01.T01 AT2G31960 47.561 246 121 3 106 343 1657 1902 6.48e-66 226
MsG0680031924.01.T01 AT2G31960 47.561 246 121 3 106 343 1698 1943 6.75e-66 226
MsG0680031924.01.T01 AT2G31960 47.561 246 121 3 106 343 1698 1943 6.75e-66 226
MsG0680031924.01.T01 AT2G31960 47.561 246 121 3 106 343 1698 1943 6.75e-66 226
MsG0680031924.01.T01 AT2G31960 47.561 246 121 3 106 343 1698 1943 6.75e-66 226
MsG0680031924.01.T01 AT1G05570 47.154 246 122 3 106 343 1657 1902 2.79e-65 224
MsG0680031924.01.T01 AT1G05570 47.154 246 122 3 106 343 1698 1943 3.11e-65 224
MsG0680031924.01.T01 AT1G05570 47.154 246 122 3 106 343 1698 1943 3.11e-65 224
MsG0680031924.01.T01 AT1G05570 47.154 246 122 3 106 343 1698 1943 3.11e-65 224
MsG0680031924.01.T01 AT1G06490 44.856 243 127 2 106 341 1683 1925 1.44e-60 210
MsG0680031924.01.T01 AT1G06490 44.856 243 127 2 106 341 1683 1925 1.97e-60 210
MsG0680031924.01.T01 AT3G14570 41.393 244 136 2 107 343 1732 1975 6.91e-58 202
MsG0680031924.01.T01 AT3G14570 41.393 244 136 2 107 343 1716 1959 6.97e-58 202
MsG0680031924.01.T01 AT3G14570 41.393 244 136 2 107 343 1706 1949 7.52e-58 202
MsG0680031924.01.T01 AT3G59100 45.228 241 125 2 106 339 1374 1614 1.26e-56 199
MsG0680031924.01.T01 AT3G59100 45.228 241 125 2 106 339 1671 1911 1.41e-56 199
MsG0680031924.01.T01 AT5G13000 46.122 245 125 2 106 343 1704 1948 1.97e-55 196
MsG0680031924.01.T01 AT5G36870 42.857 245 129 6 106 340 1610 1853 1.99e-53 189
MsG0680031924.01.T01 AT5G36870 42.857 245 129 6 106 340 1610 1853 1.99e-53 189
MsG0680031924.01.T01 AT5G36870 42.857 245 129 6 106 340 1617 1860 2.23e-53 189
MsG0680031924.01.T01 AT5G36870 42.857 245 129 6 106 340 1618 1861 2.30e-53 189
MsG0680031924.01.T01 AT4G03550 43.952 248 131 3 107 346 1533 1780 3.75e-53 189
MsG0680031924.01.T01 AT2G13680 43.678 261 118 6 92 339 1674 1918 4.64e-50 180
MsG0680031924.01.T01 AT5G13000 45.417 240 113 2 106 343 1684 1907 1.00e-47 173
MsG0680031924.01.T01 AT4G04970 41.423 239 133 2 110 341 1528 1766 1.91e-47 172

Find 89 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATAAGCAGTTGGTTTA+TGG 0.180541 6:+29952971 MsG0680031924.01.T01:CDS
CTTGCTTATGGCTACAATTA+TGG 0.205919 6:+29952924 MsG0680031924.01.T01:CDS
TCCTGACGGGTTGAATAAAT+AGG 0.268935 6:-29953015 None:intergenic
TTCAGTTTATGCCATTTAAT+CGG 0.270491 6:+29956635 MsG0680031924.01.T01:three_prime_UTR
CGAACTCCATGTGTGTATTA+TGG 0.288587 6:+29952271 MsG0680031924.01.T01:CDS
TTGATAGTATATCTTGCTTA+TGG 0.305540 6:+29952912 MsG0680031924.01.T01:CDS
GCTTATACACAATGCCATAT+TGG 0.309797 6:-29953765 None:intergenic
GAAATTTCTTTAATCCTTGC+TGG 0.312438 6:+29956451 MsG0680031924.01.T01:CDS
GTGTATAAGCTTAACATAAA+AGG 0.315030 6:+29953778 MsG0680031924.01.T01:CDS
TTCATATGCAGGCTCATATC+AGG 0.316405 6:+29953689 MsG0680031924.01.T01:intron
GGTTAAACATCAGGCGAGTT+TGG 0.321169 6:-29956408 None:intergenic
GCTGGGAACAATCCCAATAC+TGG 0.336124 6:+29956469 MsG0680031924.01.T01:CDS
TTTGTTGGCACTGGCTGGTT+TGG 0.340869 6:+29955035 MsG0680031924.01.T01:CDS
TGATGAAAAGGCTAGGACTA+TGG 0.357756 6:+29956284 MsG0680031924.01.T01:CDS
CTACTTTACAGAGGTGGAAT+TGG 0.364645 6:+29953398 MsG0680031924.01.T01:CDS
TTGTACAAACCGCAACAAAA+AGG 0.365201 6:-29955001 None:intergenic
CAGAGGTGGAATTGGTGTTA+AGG 0.370455 6:+29953406 MsG0680031924.01.T01:CDS
ATATCAGGAGCTTGGGTTCA+AGG 0.381132 6:+29953704 MsG0680031924.01.T01:CDS
GTTTGGAATGTTGATACAAA+TGG 0.381192 6:-29956391 None:intergenic
ACTTCCGAGACTGGACAAAT+TGG 0.393404 6:+29953375 MsG0680031924.01.T01:CDS
GGTTGTAGCAATTATATTAA+CGG 0.395703 6:+29955056 MsG0680031924.01.T01:CDS
CCCTATTTATTCAACCCGTC+AGG 0.402871 6:+29953014 MsG0680031924.01.T01:CDS
TACAGGTTTATGGATTATCA+TGG 0.408300 6:+29954835 MsG0680031924.01.T01:intron
TACAACTATATCCCAGTATT+GGG 0.409203 6:-29956481 None:intergenic
TGATACATAAACAAAGAAAT+CGG 0.411025 6:-29952241 None:intergenic
AACCAGCCAGTGCCAACAAA+AGG 0.423535 6:-29955032 None:intergenic
TCAGTTTATGCCATTTAATC+GGG 0.437063 6:+29956636 MsG0680031924.01.T01:three_prime_UTR
GTTGGTTTATGGCTCTATCC+TGG 0.445711 6:+29952982 MsG0680031924.01.T01:CDS
TAGTGGTAGACTTCCGAGAC+TGG 0.451118 6:+29953366 MsG0680031924.01.T01:CDS
TCTAACCCTCGGCTAAAAGC+CGG 0.456467 6:-29956430 None:intergenic
CAGGCTCATATCAGGAGCTT+GGG 0.461172 6:+29953697 MsG0680031924.01.T01:intron
TCTTGTCTTCAGGTTGGAAG+TGG 0.465041 6:+29952881 MsG0680031924.01.T01:intron
GTACAACTATATCCCAGTAT+TGG 0.465712 6:-29956482 None:intergenic
TAAAAGCCGGGTTAAACATC+AGG 0.465991 6:-29956417 None:intergenic
AGCTTGGTGGGAAGAAGAAC+TGG 0.474218 6:+29953445 MsG0680031924.01.T01:CDS
AAAGGATATCTTCTGGCTAA+AGG 0.475643 6:-29954983 None:intergenic
CCTGACGGGTTGAATAAATA+GGG 0.479126 6:-29953014 None:intergenic
GGTATCTTTAGCATTGTGAA+TGG 0.481356 6:+29956595 MsG0680031924.01.T01:three_prime_UTR
TAGCATTCATTCCTACTGGA+TGG 0.482578 6:+29955112 MsG0680031924.01.T01:CDS
GTGTTAAGGAAGAAGAAAGC+TGG 0.485493 6:+29953420 MsG0680031924.01.T01:CDS
GCAGGCTCATATCAGGAGCT+TGG 0.486492 6:+29953696 MsG0680031924.01.T01:intron
AAATTTCTTTAATCCTTGCT+GGG 0.487621 6:+29956452 MsG0680031924.01.T01:CDS
AGCATTCATTCCTACTGGAT+GGG 0.487974 6:+29955113 MsG0680031924.01.T01:CDS
TTAAAGAAATTTCTAACCCT+CGG 0.488137 6:-29956441 None:intergenic
GGATAGTCAGTAATTCTTGT+AGG 0.488724 6:+29956557 MsG0680031924.01.T01:three_prime_UTR
TAGGACTATGGAAGTTCATT+CGG 0.491317 6:+29956296 MsG0680031924.01.T01:CDS
CATGGAAGCCTGTGATGAAA+AGG 0.492401 6:+29956272 MsG0680031924.01.T01:CDS
CTAACCCTCGGCTAAAAGCC+GGG 0.497501 6:-29956429 None:intergenic
TTCTTCTAAGCATAAGCAGT+TGG 0.498284 6:+29952964 MsG0680031924.01.T01:CDS
GCATTCATTCCTACTGGATG+GGG 0.500451 6:+29955114 MsG0680031924.01.T01:CDS
AAGAAGAAAGCTGGGAAGCT+TGG 0.504374 6:+29953429 MsG0680031924.01.T01:CDS
AACCACGAAAAGAATGCAAT+GGG 0.505595 6:-29956367 None:intergenic
AAAATAGAAGCAAATATGTC+CGG 0.508314 6:-29955090 None:intergenic
TACTGGGATATAGTTGTACT+TGG 0.512666 6:+29956486 MsG0680031924.01.T01:exon
AACTCGCCTGATGTTTAACC+CGG 0.514397 6:+29956411 MsG0680031924.01.T01:CDS
TTGTATAGATTGCTGCTGCA+TGG 0.520895 6:+29956254 MsG0680031924.01.T01:intron
CTTGCACGTCTATATGATGC+TGG 0.525096 6:+29956322 MsG0680031924.01.T01:CDS
CAAATATGTCCGGTACAGAT+AGG 0.528349 6:-29955080 None:intergenic
AGGAACTGATACTTCATTGA+CGG 0.539585 6:+29953798 MsG0680031924.01.T01:CDS
ACCAGCCAGTGCCAACAAAA+GGG 0.540273 6:-29955031 None:intergenic
ACAGGTTTATGGATTATCAT+GGG 0.544377 6:+29954836 MsG0680031924.01.T01:intron
AAGAAAGCTGGGAAGCTTGG+TGG 0.545199 6:+29953432 MsG0680031924.01.T01:CDS
ATAAGATAATGCTCTTGAGA+AGG 0.546542 6:+29952192 None:intergenic
TGTTAAGGAAGAAGAAAGCT+GGG 0.553149 6:+29953421 MsG0680031924.01.T01:CDS
AGAAAGCTGGGAAGCTTGGT+GGG 0.554025 6:+29953433 MsG0680031924.01.T01:CDS
TAAGATAATGCTCTTGAGAA+GGG 0.556723 6:+29952193 None:intergenic
TCTGTTTAGTTCCACAGTAG+TGG 0.558948 6:+29952334 MsG0680031924.01.T01:CDS
CTGGGAACAATCCCAATACT+GGG 0.564727 6:+29956470 MsG0680031924.01.T01:CDS
TGGATTATCATGGGTCGTGT+TGG 0.564988 6:+29954845 MsG0680031924.01.T01:CDS
ATGTGTGTATTATGGCTTGG+AGG 0.567112 6:+29952279 MsG0680031924.01.T01:CDS
ATTAACGGACCTATCTGTAC+CGG 0.575063 6:+29955071 MsG0680031924.01.T01:CDS
TATTGGGATTGTTCCCAGCA+AGG 0.578363 6:-29956465 None:intergenic
CGTCTATATGATGCTGGCAT+GGG 0.583177 6:+29956328 MsG0680031924.01.T01:CDS
TTCAACCCGTCAGGATTGAG+TGG 0.583330 6:+29953023 MsG0680031924.01.T01:CDS
TCCATGTGTGTATTATGGCT+TGG 0.583485 6:+29952276 MsG0680031924.01.T01:CDS
CTACTGTGGAACTAAACAGA+TGG 0.590197 6:-29952331 None:intergenic
ACGTCTATATGATGCTGGCA+TGG 0.592963 6:+29956327 MsG0680031924.01.T01:CDS
AATTGGCTACTTTACAGAGG+TGG 0.594196 6:+29953392 MsG0680031924.01.T01:CDS
GTAGCCAATTTGTCCAGTCT+CGG 0.596399 6:-29953379 None:intergenic
AAACCACGAAAAGAATGCAA+TGG 0.598378 6:-29956368 None:intergenic
GCTTATGGCTACAATTATGG+TGG 0.608373 6:+29952927 MsG0680031924.01.T01:CDS
AGAGAAATTCAGTAGATGAG+AGG 0.609176 6:-29953324 None:intergenic
GATAAAATTCCCCATCCAGT+AGG 0.616607 6:-29955123 None:intergenic
GAGAAGGGATATGCAAAACA+TGG 0.617257 6:+29952208 MsG0680031924.01.T01:CDS
AAGCCTGTGATGAAAAGGCT+AGG 0.620166 6:+29956277 MsG0680031924.01.T01:CDS
TAAATAGGGAGCAAACAACC+AGG 0.637215 6:-29953000 None:intergenic
TTGTCTTGCTACCACTACTG+TGG 0.668196 6:-29952345 None:intergenic
TCCAAGCCATAATACACACA+TGG 0.677511 6:-29952277 None:intergenic
ACAAATTGGCTACTTTACAG+AGG 0.700269 6:+29953389 MsG0680031924.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCTGTAAAAAAAAAAAA+AGG + Chr6:29954685-29954704 MsG0680031924.01.T01:intron 10.0%
!! AATAAGATAAAAATTGATAA+GGG - Chr6:29955976-29955995 None:intergenic 10.0%
!! TTAAGTTAATAAAAATTCAA+AGG - Chr6:29953848-29953867 None:intergenic 10.0%
!! AATTTATCTTAATTCTTACA+TGG - Chr6:29952404-29952423 None:intergenic 15.0%
!! GAATAAGATAAAAATTGATA+AGG - Chr6:29955977-29955996 None:intergenic 15.0%
!! TCAAATTAGGTAATTTAAAA+TGG - Chr6:29955633-29955652 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - Chr6:29955687-29955706 None:intergenic 15.0%
!!! AAACAAGAATTTTTTTATTC+CGG + Chr6:29953260-29953279 MsG0680031924.01.T01:intron 15.0%
!!! ATTTTAACAAAATTGTAGAA+TGG + Chr6:29954202-29954221 MsG0680031924.01.T01:intron 15.0%
!!! CAAATTAGGTAATTTAAAAT+GGG - Chr6:29955632-29955651 None:intergenic 15.0%
!!! CAGTTTTTTTTTTTTTTGAA+TGG + Chr6:29952646-29952665 MsG0680031924.01.T01:intron 15.0%
!!! TTTTAACAAAATTGTAGAAT+GGG + Chr6:29954203-29954222 MsG0680031924.01.T01:intron 15.0%
!! AAAAAAACTGTCTAAAAACT+AGG - Chr6:29952636-29952655 None:intergenic 20.0%
!! AATTCTTGAAAAATAAGGAT+GGG - Chr6:29952835-29952854 None:intergenic 20.0%
!! AATTGTAACATATAAGATGT+TGG + Chr6:29955713-29955732 MsG0680031924.01.T01:intron 20.0%
!! CTTATATTGCTTTCATTTAA+AGG + Chr6:29955277-29955296 MsG0680031924.01.T01:intron 20.0%
!! GTCGAATATAAGATAAATTA+AGG - Chr6:29954759-29954778 None:intergenic 20.0%
!! TACCTTAAGAATCTATTTAT+CGG - Chr6:29956003-29956022 None:intergenic 20.0%
!! TCATTTATGAAAGAAATTGT+CGG + Chr6:29953550-29953569 MsG0680031924.01.T01:intron 20.0%
!! TGATACATAAACAAAGAAAT+CGG - Chr6:29952244-29952263 None:intergenic 20.0%
!! TTAATTGTAGTTGAATCAAA+CGG - Chr6:29955493-29955512 None:intergenic 20.0%
!! TTAGCAATTCTTGAAAAATA+AGG - Chr6:29952840-29952859 None:intergenic 20.0%
!!! AGATTTTTCATTTTCCAATA+TGG + Chr6:29953751-29953770 MsG0680031924.01.T01:CDS 20.0%
!!! AGTGCTAATAATTCTTTTTA+AGG + Chr6:29954869-29954888 MsG0680031924.01.T01:CDS 20.0%
!!! ATACATCATACATTTTGATT+CGG - Chr6:29956525-29956544 None:intergenic 20.0%
!!! ATGATGTATTTTTTGTTTAG+TGG + Chr6:29956536-29956555 MsG0680031924.01.T01:three_prime_UTR 20.0%
!!! TTATTTTTGCCATTTTATAC+AGG + Chr6:29954818-29954837 MsG0680031924.01.T01:intron 20.0%
! AAAATAGAAGCAAATATGTC+CGG - Chr6:29955093-29955112 None:intergenic 25.0%
! AAACAAACATCAACTGAAAA+AGG - Chr6:29955345-29955364 None:intergenic 25.0%
! AAAGATTACTATCGGAAATA+CGG - Chr6:29954392-29954411 None:intergenic 25.0%
! AAATTTCTTTAATCCTTGCT+GGG + Chr6:29956452-29956471 MsG0680031924.01.T01:CDS 25.0%
! ATAAAAATTGATAAGGGAGA+TGG - Chr6:29955970-29955989 None:intergenic 25.0%
! ATCACTCTGATTCTTAAATT+TGG + Chr6:29956162-29956181 MsG0680031924.01.T01:intron 25.0%
! ATCCATAAACCTGTATAAAA+TGG - Chr6:29954830-29954849 None:intergenic 25.0%
! ATGCAGACATGAAAAAAAAA+TGG + Chr6:29954527-29954546 MsG0680031924.01.T01:intron 25.0%
! ATTGACATTCTAATAAATCC+CGG + Chr6:29954613-29954632 MsG0680031924.01.T01:intron 25.0%
! CAATTCTTGAAAAATAAGGA+TGG - Chr6:29952836-29952855 None:intergenic 25.0%
! CATTTATGAAAGAAATTGTC+GGG + Chr6:29953551-29953570 MsG0680031924.01.T01:intron 25.0%
! GGTTGTAGCAATTATATTAA+CGG + Chr6:29955056-29955075 MsG0680031924.01.T01:CDS 25.0%
! GTGTATAAGCTTAACATAAA+AGG + Chr6:29953778-29953797 MsG0680031924.01.T01:CDS 25.0%
! TGTTTCCAACTGTTAAATAA+AGG + Chr6:29953882-29953901 MsG0680031924.01.T01:intron 25.0%
! TTAAAGAAATTTCTAACCCT+CGG - Chr6:29956444-29956463 None:intergenic 25.0%
! TTAACATCAAAATTGTGCAT+TGG + Chr6:29955805-29955824 MsG0680031924.01.T01:intron 25.0%
! TTATTTATCTCATTCAACTG+TGG + Chr6:29955875-29955894 MsG0680031924.01.T01:intron 25.0%
! TTTCCTTGATTTATGTTACT+AGG - Chr6:29954662-29954681 None:intergenic 25.0%
! TTTGCAATTATTTCATATGC+AGG + Chr6:29953678-29953697 MsG0680031924.01.T01:intron 25.0%
!! AACTTCCTTTATTTAACAGT+TGG - Chr6:29953890-29953909 None:intergenic 25.0%
!! ATAGTGCACATTTTCAAATT+AGG - Chr6:29955646-29955665 None:intergenic 25.0%
!! ATTCTTAAATTTGGTATCGA+TGG + Chr6:29956171-29956190 MsG0680031924.01.T01:intron 25.0%
!! CTCTCTTATTGTGTATTTTA+GGG + Chr6:29953343-29953362 MsG0680031924.01.T01:CDS 25.0%
!! GTAATTTAAAATGGGATGAA+GGG - Chr6:29955624-29955643 None:intergenic 25.0%
!! TACAATTTTGTTAAAATCCC+AGG - Chr6:29954199-29954218 None:intergenic 25.0%
!! TCTCTCTTATTGTGTATTTT+AGG + Chr6:29953342-29953361 MsG0680031924.01.T01:CDS 25.0%
!! TGAAATTTCCTAAGTTCTAA+TGG - Chr6:29952601-29952620 None:intergenic 25.0%
!! TTCAGTTTATGCCATTTAAT+CGG + Chr6:29956635-29956654 MsG0680031924.01.T01:three_prime_UTR 25.0%
!! TTGATAGTATATCTTGCTTA+TGG + Chr6:29952912-29952931 MsG0680031924.01.T01:CDS 25.0%
!!! ATACATTTTGATTCGGTATA+TGG - Chr6:29956518-29956537 None:intergenic 25.0%
!!! CTATTTTGTTATTTGACATC+TGG + Chr6:29956029-29956048 MsG0680031924.01.T01:intron 25.0%
!!! TGTAGGTAGATTATTTTGTA+AGG + Chr6:29956574-29956593 MsG0680031924.01.T01:three_prime_UTR 25.0%
!!! TTAGTAATTTGTTGCTAGAT+TGG + Chr6:29952675-29952694 MsG0680031924.01.T01:intron 25.0%
AAAATCCCAGGCAAATAATA+AGG - Chr6:29954187-29954206 None:intergenic 30.0%
AAATGAAAAATCTCAGACTC+AGG - Chr6:29953744-29953763 None:intergenic 30.0%
AACCTAGTCATGAATAACTT+TGG + Chr6:29953527-29953546 MsG0680031924.01.T01:intron 30.0%
AATTAATGCTGCATTAGAAC+TGG + Chr6:29955507-29955526 MsG0680031924.01.T01:intron 30.0%
ACCTAATTTAATGTGCCAAT+GGG + Chr6:29954003-29954022 MsG0680031924.01.T01:intron 30.0%
AGAATTAAACTTGCCAATCA+AGG - Chr6:29953202-29953221 None:intergenic 30.0%
AGATGCACATACTTGAAATT+CGG + Chr6:29954040-29954059 MsG0680031924.01.T01:intron 30.0%
ATAAGCAACTATTTCAACAG+AGG - Chr6:29953084-29953103 None:intergenic 30.0%
ATAGAATCAAACTACAATGC+AGG - Chr6:29955247-29955266 None:intergenic 30.0%
ATCAACTTTCATTTCCTTTG+AGG + Chr6:29953297-29953316 MsG0680031924.01.T01:intron 30.0%
CAAATCCTTATTATTTGCCT+GGG + Chr6:29954179-29954198 MsG0680031924.01.T01:intron 30.0%
CACCGATAAATAGATTCTTA+AGG + Chr6:29955998-29956017 MsG0680031924.01.T01:intron 30.0%
GAAATTTCTTTAATCCTTGC+TGG + Chr6:29956451-29956470 MsG0680031924.01.T01:CDS 30.0%
GAGCCAGAAAAATTACAAAT+CGG - Chr6:29952437-29952456 None:intergenic 30.0%
TAATAAACACATTGCATCAG+AGG - Chr6:29955164-29955183 None:intergenic 30.0%
TACAACTATATCCCAGTATT+GGG - Chr6:29956484-29956503 None:intergenic 30.0%
TACTACGTTATGCTAAAAGA+GGG + Chr6:29953919-29953938 MsG0680031924.01.T01:intron 30.0%
TAGTCGACTAACTATTTAAG+AGG + Chr6:29953607-29953626 MsG0680031924.01.T01:intron 30.0%
TCAACTGTGTCACATAATAT+GGG + Chr6:29955840-29955859 MsG0680031924.01.T01:intron 30.0%
TCAGAAGCAAAGATTACTAT+CGG - Chr6:29954400-29954419 None:intergenic 30.0%
TGAAACTCAACAAAGATAGA+TGG + Chr6:29954226-29954245 MsG0680031924.01.T01:intron 30.0%
TGTCCTAGTAACATAAATCA+AGG + Chr6:29954656-29954675 MsG0680031924.01.T01:intron 30.0%
TTACTACGTTATGCTAAAAG+AGG + Chr6:29953918-29953937 MsG0680031924.01.T01:intron 30.0%
TTCGTGTTAGTTATTTGTCT+GGG + Chr6:29954294-29954313 MsG0680031924.01.T01:intron 30.0%
TTGATTTATGTTACTAGGAC+AGG - Chr6:29954657-29954676 None:intergenic 30.0%
TTTCGTGTTAGTTATTTGTC+TGG + Chr6:29954293-29954312 MsG0680031924.01.T01:intron 30.0%
! ACAGGTTTATGGATTATCAT+GGG + Chr6:29954836-29954855 MsG0680031924.01.T01:intron 30.0%
! AGAAGATATCCTTTTTGTTG+CGG + Chr6:29954992-29955011 MsG0680031924.01.T01:CDS 30.0%
! ATGCTTTTCCAAGTATAACT+TGG + Chr6:29952568-29952587 MsG0680031924.01.T01:intron 30.0%
! GCTTATCTTGTTGTCATAAT+TGG - Chr6:29953655-29953674 None:intergenic 30.0%
! GGTAATTTAAAATGGGATGA+AGG - Chr6:29955625-29955644 None:intergenic 30.0%
! GTTTGGAATGTTGATACAAA+TGG - Chr6:29956394-29956413 None:intergenic 30.0%
! TAAAAACTAGGTATTTTCCC+AGG - Chr6:29952624-29952643 None:intergenic 30.0%
! TACAGGTTTATGGATTATCA+TGG + Chr6:29954835-29954854 MsG0680031924.01.T01:intron 30.0%
! TCAGTTTATGCCATTTAATC+GGG + Chr6:29956636-29956655 MsG0680031924.01.T01:three_prime_UTR 30.0%
!! AAATAATAAGGATTTGCTGG+AGG - Chr6:29954175-29954194 None:intergenic 30.0%
!! AATAATAAGGATTTGCTGGA+GGG - Chr6:29954174-29954193 None:intergenic 30.0%
!! ATTTTAGCATTCATTCCTAC+TGG + Chr6:29955108-29955127 MsG0680031924.01.T01:CDS 30.0%
!! TTATTTTATCTTTCCGCTGT+TGG + Chr6:29955185-29955204 MsG0680031924.01.T01:intron 30.0%
!!! ATTTGTAATTTTTCTGGCTC+TGG + Chr6:29952437-29952456 MsG0680031924.01.T01:intron 30.0%
!!! GTTCAGACATTTTTTGTAAG+TGG + Chr6:29956066-29956085 MsG0680031924.01.T01:intron 30.0%
!!! TAGCCGATTTGTAATTTTTC+TGG + Chr6:29952431-29952450 MsG0680031924.01.T01:intron 30.0%
!!! TATTGTGTATTTTAGGGTAG+TGG + Chr6:29953349-29953368 MsG0680031924.01.T01:CDS 30.0%
!!! TGCCATTTTATACAGGTTTA+TGG + Chr6:29954825-29954844 MsG0680031924.01.T01:intron 30.0%
!!! TGGTCATTTTTTTTCCTGAT+AGG - Chr6:29953635-29953654 None:intergenic 30.0%
!!! TTTGTAATTTTTCTGGCTCT+GGG + Chr6:29952438-29952457 MsG0680031924.01.T01:intron 30.0%
AAACCACGAAAAGAATGCAA+TGG - Chr6:29956371-29956390 None:intergenic 35.0%
AAAGAGTGATTAAGCAGTCT+TGG + Chr6:29952796-29952815 MsG0680031924.01.T01:intron 35.0%
AAATGTCTGAACAAGTGTGT+AGG - Chr6:29956058-29956077 None:intergenic 35.0%
AACCACGAAAAGAATGCAAT+GGG - Chr6:29956370-29956389 None:intergenic 35.0%
AATGTTTATTAGTTACGCCC+TGG + Chr6:29955374-29955393 MsG0680031924.01.T01:intron 35.0%
ACACTATTCAATGTGCTGAA+AGG + Chr6:29956090-29956109 MsG0680031924.01.T01:intron 35.0%
ACCCATTGGCACATTAAATT+AGG - Chr6:29954007-29954026 None:intergenic 35.0%
ACCTGAAGACAAGAAGATAA+AGG - Chr6:29952875-29952894 None:intergenic 35.0%
ACTACGTTATGCTAAAAGAG+GGG + Chr6:29953920-29953939 MsG0680031924.01.T01:intron 35.0%
ACTCTTTGTCTAAAAACCAG+GGG - Chr6:29952783-29952802 None:intergenic 35.0%
AGAACTTAGGAAATTTCACC+TGG + Chr6:29952603-29952622 MsG0680031924.01.T01:intron 35.0%
AGAGAAATTCAGTAGATGAG+AGG - Chr6:29953327-29953346 None:intergenic 35.0%
AGGAACTGATACTTCATTGA+CGG + Chr6:29953798-29953817 MsG0680031924.01.T01:CDS 35.0%
AGGTGCGAAATTGAATAATG+TGG + Chr6:29954889-29954908 MsG0680031924.01.T01:intron 35.0%
ATCACATGCTTGAAATCAGT+AGG + Chr6:29955208-29955227 MsG0680031924.01.T01:intron 35.0%
ATCTTGTATCCTTGCTCAAT+AGG + Chr6:29954954-29954973 MsG0680031924.01.T01:intron 35.0%
ATGTTTATTAGTTACGCCCT+GGG + Chr6:29955375-29955394 MsG0680031924.01.T01:intron 35.0%
CAAATCCAATGTGCTTAGAA+TGG - Chr6:29954425-29954444 None:intergenic 35.0%
CACTATTCAATGTGCTGAAA+GGG + Chr6:29956091-29956110 MsG0680031924.01.T01:intron 35.0%
CACTCTTTGTCTAAAAACCA+GGG - Chr6:29952784-29952803 None:intergenic 35.0%
CTTACGGATCACAATACAAT+TGG - Chr6:29955906-29955925 None:intergenic 35.0%
CTTGCTTATGGCTACAATTA+TGG + Chr6:29952924-29952943 MsG0680031924.01.T01:CDS 35.0%
GAACTTAGGAAATTTCACCT+GGG + Chr6:29952604-29952623 MsG0680031924.01.T01:intron 35.0%
GACCAAAGTTATTCATGACT+AGG - Chr6:29953532-29953551 None:intergenic 35.0%
GACCTAATTTAATGTGCCAA+TGG + Chr6:29954002-29954021 MsG0680031924.01.T01:intron 35.0%
GCAAATCCTTATTATTTGCC+TGG + Chr6:29954178-29954197 MsG0680031924.01.T01:intron 35.0%
GCAACAAAAAGGATATCTTC+TGG - Chr6:29954993-29955012 None:intergenic 35.0%
GCTTATACACAATGCCATAT+TGG - Chr6:29953768-29953787 None:intergenic 35.0%
GGATAGTCAGTAATTCTTGT+AGG + Chr6:29956557-29956576 MsG0680031924.01.T01:three_prime_UTR 35.0%
GGCAAATAATAAGGATTTGC+TGG - Chr6:29954178-29954197 None:intergenic 35.0%
GGTATCTTTAGCATTGTGAA+TGG + Chr6:29956595-29956614 MsG0680031924.01.T01:three_prime_UTR 35.0%
GTACAACTATATCCCAGTAT+TGG - Chr6:29956485-29956504 None:intergenic 35.0%
GTCAACTGTGTCACATAATA+TGG + Chr6:29955839-29955858 MsG0680031924.01.T01:intron 35.0%
TAAAGGTAGTTAGCAAACTG+TGG + Chr6:29955294-29955313 MsG0680031924.01.T01:intron 35.0%
TAACACGAAAAAATCTGCCA+TGG - Chr6:29954283-29954302 None:intergenic 35.0%
TACTGGGATATAGTTGTACT+TGG + Chr6:29956486-29956505 MsG0680031924.01.T01:exon 35.0%
TAGGACTATGGAAGTTCATT+CGG + Chr6:29956296-29956315 MsG0680031924.01.T01:CDS 35.0%
TATCAATGTTGTCAGTGAAG+TGG - Chr6:29955937-29955956 None:intergenic 35.0%
TATTCTTCTACCAAAACCCA+GGG - Chr6:29955394-29955413 None:intergenic 35.0%
TCAACATTTGGAAGAACAAG+TGG - Chr6:29952496-29952515 None:intergenic 35.0%
TCACTCTTTGTCTAAAAACC+AGG - Chr6:29952785-29952804 None:intergenic 35.0%
TCCAAAATGGATACAAAGCA+TGG - Chr6:29952466-29952485 None:intergenic 35.0%
TCCTTTATCTTCTTGTCTTC+AGG + Chr6:29952871-29952890 MsG0680031924.01.T01:intron 35.0%
TGAAATCAGTAGGTAGTCTT+TGG + Chr6:29955218-29955237 MsG0680031924.01.T01:intron 35.0%
TGATTGTACAATTTGAACCG+CGG + Chr6:29955538-29955557 MsG0680031924.01.T01:intron 35.0%
TGTTAAGGAAGAAGAAAGCT+GGG + Chr6:29953421-29953440 MsG0680031924.01.T01:CDS 35.0%
TTATCTTCTTGTCTTCAGGT+TGG + Chr6:29952875-29952894 MsG0680031924.01.T01:intron 35.0%
TTCTTCTAAGCATAAGCAGT+TGG + Chr6:29952964-29952983 MsG0680031924.01.T01:CDS 35.0%
TTGATAGATTGTGAGATTGC+CGG - Chr6:29953282-29953301 None:intergenic 35.0%
TTGTACAAACCGCAACAAAA+AGG - Chr6:29955004-29955023 None:intergenic 35.0%
! AAAGGATATCTTCTGGCTAA+AGG - Chr6:29954986-29955005 None:intergenic 35.0%
! AAGCATAAGCAGTTGGTTTA+TGG + Chr6:29952971-29952990 MsG0680031924.01.T01:CDS 35.0%
! ACAAATTGGCTACTTTACAG+AGG + Chr6:29953389-29953408 MsG0680031924.01.T01:CDS 35.0%
! ACAAGGATTATCCCTTTTGT+TGG + Chr6:29955020-29955039 MsG0680031924.01.T01:CDS 35.0%
! ACCATGCTTTGTATCCATTT+TGG + Chr6:29952462-29952481 MsG0680031924.01.T01:intron 35.0%
! ACTTGGAAAAGCATACATCA+AGG - Chr6:29952562-29952581 None:intergenic 35.0%
! ATGCTTTGTATCCATTTTGG+AGG + Chr6:29952465-29952484 MsG0680031924.01.T01:intron 35.0%
! TACTGGATGGGGAATTTTAT+CGG + Chr6:29955125-29955144 MsG0680031924.01.T01:CDS 35.0%
! TGCTTTGTATCCATTTTGGA+GGG + Chr6:29952466-29952485 MsG0680031924.01.T01:intron 35.0%
! TTTTTGTTGCGGTTTGTACA+AGG + Chr6:29955003-29955022 MsG0680031924.01.T01:CDS 35.0%
!! AAGAATTGGCTTTACCAAGT+AGG + Chr6:29954322-29954341 MsG0680031924.01.T01:intron 35.0%
!! AGAATTGGCTTTACCAAGTA+GGG + Chr6:29954323-29954342 MsG0680031924.01.T01:intron 35.0%
!!! TTGTAATTTTTCTGGCTCTG+GGG + Chr6:29952439-29952458 MsG0680031924.01.T01:intron 35.0%
AAAAACTGTTGAACCAACCG+CGG - Chr6:29955558-29955577 None:intergenic 40.0%
AAATTACAGGCAACCCTACT+TGG - Chr6:29954339-29954358 None:intergenic 40.0%
AGCATTCATTCCTACTGGAT+GGG + Chr6:29955113-29955132 MsG0680031924.01.T01:CDS 40.0%
AGGTGAATACCTATTGAGCA+AGG - Chr6:29954966-29954985 None:intergenic 40.0%
ATGGACTTCGAAGTAAACAG+AGG - Chr6:29952385-29952404 None:intergenic 40.0%
ATTGCAGTTACATAGACCCT+TGG - Chr6:29954464-29954483 None:intergenic 40.0%
CAAATATGTCCGGTACAGAT+AGG - Chr6:29955083-29955102 None:intergenic 40.0%
CGAACTCCATGTGTGTATTA+TGG + Chr6:29952271-29952290 MsG0680031924.01.T01:CDS 40.0%
CTACTGTGGAACTAAACAGA+TGG - Chr6:29952334-29952353 None:intergenic 40.0%
CTACTTTACAGAGGTGGAAT+TGG + Chr6:29953398-29953417 MsG0680031924.01.T01:CDS 40.0%
CTATTTAAGAGGCTCCTATC+AGG + Chr6:29953618-29953637 MsG0680031924.01.T01:intron 40.0%
CTCACTTCAACCCATTGAAT+CGG - Chr6:29955456-29955475 None:intergenic 40.0%
CTCTCTTACAGAATATGTGC+AGG + Chr6:29954779-29954798 MsG0680031924.01.T01:intron 40.0%
CTCTTTGTCTAAAAACCAGG+GGG - Chr6:29952782-29952801 None:intergenic 40.0%
CTGCACATATTCTGTAAGAG+AGG - Chr6:29954781-29954800 None:intergenic 40.0%
CTGTGTCACATAATATGGGA+CGG + Chr6:29955844-29955863 MsG0680031924.01.T01:intron 40.0%
GAAAAATCTCAGACTCAGGA+TGG - Chr6:29953740-29953759 None:intergenic 40.0%
GAGAAGGGATATGCAAAACA+TGG + Chr6:29952208-29952227 MsG0680031924.01.T01:CDS 40.0%
GATAAAATTCCCCATCCAGT+AGG - Chr6:29955126-29955145 None:intergenic 40.0%
GCTTATGGCTACAATTATGG+TGG + Chr6:29952927-29952946 MsG0680031924.01.T01:CDS 40.0%
GGTCTATGTAACTGCAATGA+TGG + Chr6:29954466-29954485 MsG0680031924.01.T01:intron 40.0%
GTATTCTTCTACCAAAACCC+AGG - Chr6:29955395-29955414 None:intergenic 40.0%
GTGTTAAGGAAGAAGAAAGC+TGG + Chr6:29953420-29953439 MsG0680031924.01.T01:CDS 40.0%
GTTAGTTATTTGTCTGGGTG+TGG + Chr6:29954299-29954318 MsG0680031924.01.T01:intron 40.0%
TAAAAGCCGGGTTAAACATC+AGG - Chr6:29956420-29956439 None:intergenic 40.0%
TAAATAGGGAGCAAACAACC+AGG - Chr6:29953003-29953022 None:intergenic 40.0%
TAGCATTCATTCCTACTGGA+TGG + Chr6:29955112-29955131 MsG0680031924.01.T01:CDS 40.0%
TCCAAGCCATAATACACACA+TGG - Chr6:29952280-29952299 None:intergenic 40.0%
TCCATGTGTGTATTATGGCT+TGG + Chr6:29952276-29952295 MsG0680031924.01.T01:CDS 40.0%
TCTAAGCACATTGGATTTGC+TGG + Chr6:29954426-29954445 MsG0680031924.01.T01:intron 40.0%
TCTTTGTCTAAAAACCAGGG+GGG - Chr6:29952781-29952800 None:intergenic 40.0%
TGAAGCCATTCTAAGCACAT+TGG + Chr6:29954417-29954436 MsG0680031924.01.T01:intron 40.0%
TGAAGTGGAGATCAGACTTA+CGG - Chr6:29955922-29955941 None:intergenic 40.0%
TGATGAAAAGGCTAGGACTA+TGG + Chr6:29956284-29956303 MsG0680031924.01.T01:CDS 40.0%
TGCAGCAGCAATCTATACAA+AGG - Chr6:29956254-29956273 None:intergenic 40.0%
TGCATCAGAGTTCCTGATAT+GGG - Chr6:29954512-29954531 None:intergenic 40.0%
TGTCAACCACCTCAAATTAC+AGG - Chr6:29954352-29954371 None:intergenic 40.0%
TTCATATGCAGGCTCATATC+AGG + Chr6:29953689-29953708 MsG0680031924.01.T01:intron 40.0%
TTCCTATAGACTACACCCAT+TGG - Chr6:29954021-29954040 None:intergenic 40.0%
TTGTATAGATTGCTGCTGCA+TGG + Chr6:29956254-29956273 MsG0680031924.01.T01:intron 40.0%
! AATTGGCTACTTTACAGAGG+TGG + Chr6:29953392-29953411 MsG0680031924.01.T01:CDS 40.0%
! ACCAAACTAGCCGATTCAAT+GGG + Chr6:29955443-29955462 MsG0680031924.01.T01:intron 40.0%
! ATGTGTGTATTATGGCTTGG+AGG + Chr6:29952279-29952298 MsG0680031924.01.T01:CDS 40.0%
! ATTAACGGACCTATCTGTAC+CGG + Chr6:29955071-29955090 MsG0680031924.01.T01:CDS 40.0%
! ATTATCCCTTTTGTTGGCAC+TGG + Chr6:29955026-29955045 MsG0680031924.01.T01:CDS 40.0%
! TAATTTGAGGTGGTTGACAG+TGG + Chr6:29954353-29954372 MsG0680031924.01.T01:intron 40.0%
! TCTGTTTAGTTCCACAGTAG+TGG + Chr6:29952334-29952353 MsG0680031924.01.T01:CDS 40.0%
!! ACTAACAAGACGGTGTTATG+TGG + Chr6:29954254-29954273 MsG0680031924.01.T01:intron 40.0%
!! CCTGACGGGTTGAATAAATA+GGG - Chr6:29953017-29953036 None:intergenic 40.0%
!! GCTTTGTATCCATTTTGGAG+GGG + Chr6:29952467-29952486 MsG0680031924.01.T01:intron 40.0%
!! TCCTGACGGGTTGAATAAAT+AGG - Chr6:29953018-29953037 None:intergenic 40.0%
AACTCGCCTGATGTTTAACC+CGG + Chr6:29956411-29956430 MsG0680031924.01.T01:CDS 45.0%
AAGAAGAAAGCTGGGAAGCT+TGG + Chr6:29953429-29953448 MsG0680031924.01.T01:CDS 45.0%
AAGCCTGTGATGAAAAGGCT+AGG + Chr6:29956277-29956296 MsG0680031924.01.T01:CDS 45.0%
ACAGGTTTCGATATTGTGCC+AGG - Chr6:29954639-29954658 None:intergenic 45.0%
ACGTCTATATGATGCTGGCA+TGG + Chr6:29956327-29956346 MsG0680031924.01.T01:CDS 45.0%
ACTTCCAACTCCTTATCCCT+AGG + Chr6:29952731-29952750 MsG0680031924.01.T01:intron 45.0%
ACTTCCGAGACTGGACAAAT+TGG + Chr6:29953375-29953394 MsG0680031924.01.T01:CDS 45.0%
ATATCAGGAGCTTGGGTTCA+AGG + Chr6:29953704-29953723 MsG0680031924.01.T01:CDS 45.0%
CAGGTCACGCAATCAACATT+TGG - Chr6:29952508-29952527 None:intergenic 45.0%
CATGGAAGCCTGTGATGAAA+AGG + Chr6:29956272-29956291 MsG0680031924.01.T01:CDS 45.0%
CATTCTAATAAATCCCGGCC+TGG + Chr6:29954618-29954637 MsG0680031924.01.T01:intron 45.0%
CCCTATTTATTCAACCCGTC+AGG + Chr6:29953014-29953033 MsG0680031924.01.T01:CDS 45.0%
CGAAGCTGTTAAGCCTTGAT+TGG + Chr6:29953186-29953205 MsG0680031924.01.T01:intron 45.0%
CGTCTATATGATGCTGGCAT+GGG + Chr6:29956328-29956347 MsG0680031924.01.T01:CDS 45.0%
CTGCATCAGAGTTCCTGATA+TGG - Chr6:29954513-29954532 None:intergenic 45.0%
CTGGGAACAATCCCAATACT+GGG + Chr6:29956470-29956489 MsG0680031924.01.T01:CDS 45.0%
CTTGCACGTCTATATGATGC+TGG + Chr6:29956322-29956341 MsG0680031924.01.T01:CDS 45.0%
CTTTGTCTAAAAACCAGGGG+GGG - Chr6:29952780-29952799 None:intergenic 45.0%
GACACTCGCCAAGTTATACT+TGG - Chr6:29952579-29952598 None:intergenic 45.0%
GATAAGGAGTTGGAAGTCCA+GGG - Chr6:29952728-29952747 None:intergenic 45.0%
GATGGCTGACACTAACAAGA+CGG + Chr6:29954244-29954263 MsG0680031924.01.T01:intron 45.0%
GCATTCATTCCTACTGGATG+GGG + Chr6:29955114-29955133 MsG0680031924.01.T01:CDS 45.0%
GCGAGTGTCCATTAGAACTT+AGG + Chr6:29952590-29952609 MsG0680031924.01.T01:intron 45.0%
GGTTAAACATCAGGCGAGTT+TGG - Chr6:29956411-29956430 None:intergenic 45.0%
GTAGCCAATTTGTCCAGTCT+CGG - Chr6:29953382-29953401 None:intergenic 45.0%
GTAGGGTTGCCTGTAATTTG+AGG + Chr6:29954340-29954359 MsG0680031924.01.T01:intron 45.0%
GTCACATAATATGGGACGGA+GGG + Chr6:29955848-29955867 MsG0680031924.01.T01:intron 45.0%
TATTGGGATTGTTCCCAGCA+AGG - Chr6:29956468-29956487 None:intergenic 45.0%
TCAAGCATGTGATCCAACAG+CGG - Chr6:29955201-29955220 None:intergenic 45.0%
TCAAGGCTTAACAGCTTCGT+AGG - Chr6:29953185-29953204 None:intergenic 45.0%
TGCCAATGGGTGTAGTCTAT+AGG + Chr6:29954016-29954035 MsG0680031924.01.T01:intron 45.0%
TGGAAACAGTCTCCCATATC+AGG + Chr6:29954497-29954516 MsG0680031924.01.T01:intron 45.0%
TGGATTATCATGGGTCGTGT+TGG + Chr6:29954845-29954864 MsG0680031924.01.T01:CDS 45.0%
TGTACAATTTGAACCGCGGT+TGG + Chr6:29955542-29955561 MsG0680031924.01.T01:intron 45.0%
TGTCACATAATATGGGACGG+AGG + Chr6:29955847-29955866 MsG0680031924.01.T01:intron 45.0%
TTCAACATGCTCTCCGGTTA+AGG - Chr6:29953955-29953974 None:intergenic 45.0%
TTGTCTGGGTGTGGAAGAAT+TGG + Chr6:29954308-29954327 MsG0680031924.01.T01:intron 45.0%
TTGTCTTGCTACCACTACTG+TGG - Chr6:29952348-29952367 None:intergenic 45.0%
! ACCCATTGAATCGGCTAGTT+TGG - Chr6:29955447-29955466 None:intergenic 45.0%
! ACTAGCTTCAGAGAGCTTTG+AGG - Chr6:29953240-29953259 None:intergenic 45.0%
! AGATGAGAGGCATACCTCAA+AGG - Chr6:29953314-29953333 None:intergenic 45.0%
! ATTAGTTACGCCCTGGGTTT+TGG + Chr6:29955381-29955400 MsG0680031924.01.T01:intron 45.0%
! CTTTTGCCACTCAATCCTGA+CGG - Chr6:29953032-29953051 None:intergenic 45.0%
! GACCAAACTAGCCGATTCAA+TGG + Chr6:29955442-29955461 MsG0680031924.01.T01:intron 45.0%
! GTTGGTTTATGGCTCTATCC+TGG + Chr6:29952982-29953001 MsG0680031924.01.T01:CDS 45.0%
! TGCCCATTGCATTCTTTTCG+TGG + Chr6:29956365-29956384 MsG0680031924.01.T01:CDS 45.0%
! TTTTGCCACTCAATCCTGAC+GGG - Chr6:29953031-29953050 None:intergenic 45.0%
!! AAGCACATTGGATTTGCTGG+AGG + Chr6:29954429-29954448 MsG0680031924.01.T01:intron 45.0%
!! ACGGTGTTATGTGGAAACCA+TGG + Chr6:29954263-29954282 MsG0680031924.01.T01:intron 45.0%
!! AGTCCTAGCCTTTTCATCAC+AGG - Chr6:29956283-29956302 None:intergenic 45.0%
!! ATTGGATTTGCTGGAGGAGT+AGG + Chr6:29954435-29954454 MsG0680031924.01.T01:intron 45.0%
!! CAATGGGTTGAAGTGAGAAC+TGG + Chr6:29955459-29955478 MsG0680031924.01.T01:intron 45.0%
!! CAGAGGTGGAATTGGTGTTA+AGG + Chr6:29953406-29953425 MsG0680031924.01.T01:CDS 45.0%
!! CTGCAATGATGGTTCTGACA+TGG + Chr6:29954477-29954496 MsG0680031924.01.T01:intron 45.0%
!! GGGAGCTGATTTGGTATCAA+TGG + Chr6:29956111-29956130 MsG0680031924.01.T01:intron 45.0%
!! TCTTGTCTTCAGGTTGGAAG+TGG + Chr6:29952881-29952900 MsG0680031924.01.T01:intron 45.0%
!! TGGCTTTTTCCTCCTTCGTT+CGG + Chr6:29952695-29952714 MsG0680031924.01.T01:intron 45.0%
AACCAGCCAGTGCCAACAAA+AGG - Chr6:29955035-29955054 None:intergenic 50.0%
AAGAAAGCTGGGAAGCTTGG+TGG + Chr6:29953432-29953451 MsG0680031924.01.T01:CDS 50.0%
AAGTGGTTGCCCCTCCAAAA+TGG - Chr6:29952479-29952498 None:intergenic 50.0%
ACCAGCCAGTGCCAACAAAA+GGG - Chr6:29955034-29955053 None:intergenic 50.0%
AGAAAGCTGGGAAGCTTGGT+GGG + Chr6:29953433-29953452 MsG0680031924.01.T01:CDS 50.0%
CACACGTTCAACATGCTCTC+CGG - Chr6:29953961-29953980 None:intergenic 50.0%
CAGGCTCATATCAGGAGCTT+GGG + Chr6:29953697-29953716 MsG0680031924.01.T01:intron 50.0%
CAGGGTTAAAACCCGAACGA+AGG - Chr6:29952710-29952729 None:intergenic 50.0%
GCTGGGAACAATCCCAATAC+TGG + Chr6:29956469-29956488 MsG0680031924.01.T01:CDS 50.0%
GGATAAGGAGTTGGAAGTCC+AGG - Chr6:29952729-29952748 None:intergenic 50.0%
GGGTTGCCTGTAATTTGAGG+TGG + Chr6:29954343-29954362 MsG0680031924.01.T01:intron 50.0%
GGTTAAAACCCGAACGAAGG+AGG - Chr6:29952707-29952726 None:intergenic 50.0%
GTCGGGAACTGAACTGCTAT+GGG + Chr6:29953568-29953587 MsG0680031924.01.T01:intron 50.0%
GTGCTGAAAGGGAGCTGATT+TGG + Chr6:29956102-29956121 MsG0680031924.01.T01:intron 50.0%
GTTTCGATATTGTGCCAGGC+CGG - Chr6:29954635-29954654 None:intergenic 50.0%
TAGTGGTAGACTTCCGAGAC+TGG + Chr6:29953366-29953385 MsG0680031924.01.T01:CDS 50.0%
TCGGGAACTGAACTGCTATG+GGG + Chr6:29953569-29953588 MsG0680031924.01.T01:intron 50.0%
TCTAAAAACCAGGGGGGGTT+GGG - Chr6:29952775-29952794 None:intergenic 50.0%
TCTAACCCTCGGCTAAAAGC+CGG - Chr6:29956433-29956452 None:intergenic 50.0%
TGAGCCTAGGGATAAGGAGT+TGG - Chr6:29952738-29952757 None:intergenic 50.0%
TGGTTGACAGTGGTAGATCG+TGG + Chr6:29954363-29954382 MsG0680031924.01.T01:intron 50.0%
TGTCGGGAACTGAACTGCTA+TGG + Chr6:29953567-29953586 MsG0680031924.01.T01:intron 50.0%
TTCAACCCGTCAGGATTGAG+TGG + Chr6:29953023-29953042 MsG0680031924.01.T01:CDS 50.0%
TTTCGATATTGTGCCAGGCC+GGG - Chr6:29954634-29954653 None:intergenic 50.0%
! AGCTTGGTGGGAAGAAGAAC+TGG + Chr6:29953445-29953464 MsG0680031924.01.T01:CDS 50.0%
! AGTGAGCTAGTCTGTGGAGT+TGG - Chr6:29952533-29952552 None:intergenic 50.0%
! CCACAGACTAGCTCACTTGA+AGG + Chr6:29952536-29952555 MsG0680031924.01.T01:intron 50.0%
! CCTTCAAGTGAGCTAGTCTG+TGG - Chr6:29952539-29952558 None:intergenic 50.0%
! CTAGTCTGTGGAGTTGGTTC+AGG - Chr6:29952527-29952546 None:intergenic 50.0%
! CTGGTTTGAGCCTAGGGATA+AGG - Chr6:29952744-29952763 None:intergenic 50.0%
! TTAACCCGGCTTTTAGCCGA+GGG + Chr6:29956425-29956444 MsG0680031924.01.T01:CDS 50.0%
! TTTAACCCGGCTTTTAGCCG+AGG + Chr6:29956424-29956443 MsG0680031924.01.T01:CDS 50.0%
!! CTTCGTTCGGGTTTTAACCC+TGG + Chr6:29952708-29952727 MsG0680031924.01.T01:intron 50.0%
!! GATTTGCTGGAGGGATCTCT+TGG - Chr6:29954165-29954184 None:intergenic 50.0%
!! GGCTTTTTCCTCCTTCGTTC+GGG + Chr6:29952696-29952715 MsG0680031924.01.T01:intron 50.0%
!! TTTGTTGGCACTGGCTGGTT+TGG + Chr6:29955035-29955054 MsG0680031924.01.T01:CDS 50.0%
!!! GGGGCTGTTTTAGCCTTAAC+CGG + Chr6:29953939-29953958 MsG0680031924.01.T01:intron 50.0%
CTAACCCTCGGCTAAAAGCC+GGG - Chr6:29956432-29956451 None:intergenic 55.0%
CTCAGCTAGACTCCAAGCGT+GGG - Chr6:29954110-29954129 None:intergenic 55.0%
GCAGGCTCATATCAGGAGCT+TGG + Chr6:29953696-29953715 MsG0680031924.01.T01:intron 55.0%
GTCTAAAAACCAGGGGGGGT+TGG - Chr6:29952776-29952795 None:intergenic 55.0%
TCCAAATTCCGACCCACGCT+TGG + Chr6:29954095-29954114 MsG0680031924.01.T01:intron 55.0%
TCCAAGCGTGGGTCGGAATT+TGG - Chr6:29954099-29954118 None:intergenic 55.0%
TCTCAGCTAGACTCCAAGCG+TGG - Chr6:29954111-29954130 None:intergenic 55.0%
!! GCTCAGCTGGTTTGAGCCTA+GGG - Chr6:29952750-29952769 None:intergenic 55.0%
!! GGATTTGCTGGAGGAGTAGG+TGG + Chr6:29954438-29954457 MsG0680031924.01.T01:intron 55.0%
!!! TCCCTTTTGTTGGCACTGGC+TGG + Chr6:29955030-29955049 MsG0680031924.01.T01:CDS 55.0%
CTGGAGGAGTAGGTGGCCAA+GGG + Chr6:29954445-29954464 MsG0680031924.01.T01:intron 60.0%
GCTAGACTCCAAGCGTGGGT+CGG - Chr6:29954106-29954125 None:intergenic 60.0%
!! CGCTCAGCTGGTTTGAGCCT+AGG - Chr6:29952751-29952770 None:intergenic 60.0%
GCTGGAGGAGTAGGTGGCCA+AGG + Chr6:29954444-29954463 MsG0680031924.01.T01:intron 65.0%
CTGAGCGTCCCAACCCCCCC+TGG + Chr6:29952764-29952783 MsG0680031924.01.T01:intron 75.0%
GGGGGGTTGGGACGCTCAGC+TGG - Chr6:29952763-29952782 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr6 gene 29952200 29956663 29952200 ID=MsG0680031924.01;Name=MsG0680031924.01
Chr6 mRNA 29952200 29956663 29952200 ID=MsG0680031924.01.T01;Parent=MsG0680031924.01;Name=MsG0680031924.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0.66|0.57|0.85|0.66|0.57|7|165|346
Chr6 exon 29956262 29956663 29956262 ID=MsG0680031924.01.T01:exon:42820;Parent=MsG0680031924.01.T01
Chr6 exon 29954976 29955146 29954976 ID=MsG0680031924.01.T01:exon:42819;Parent=MsG0680031924.01.T01
Chr6 exon 29954840 29954890 29954840 ID=MsG0680031924.01.T01:exon:42818;Parent=MsG0680031924.01.T01
Chr6 exon 29953700 29953819 29953700 ID=MsG0680031924.01.T01:exon:42817;Parent=MsG0680031924.01.T01
Chr6 exon 29953319 29953466 29953319 ID=MsG0680031924.01.T01:exon:42816;Parent=MsG0680031924.01.T01
Chr6 exon 29952893 29953050 29952893 ID=MsG0680031924.01.T01:exon:42815;Parent=MsG0680031924.01.T01
Chr6 exon 29952200 29952355 29952200 ID=MsG0680031924.01.T01:exon:42814;Parent=MsG0680031924.01.T01
Chr6 CDS 29952200 29952355 29952200 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29952893 29953050 29952893 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29953319 29953466 29953319 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29953700 29953819 29953700 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29954840 29954890 29954840 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29954976 29955146 29954976 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 CDS 29956262 29956498 29956262 ID=MsG0680031924.01.T01:cds;Parent=MsG0680031924.01.T01
Chr6 three_prime_UTR 29956499 29956663 29956499 ID=MsG0680031924.01.T01:three_prime_utr;Parent=MsG0680031924.01.T01
Gene Sequence

>MsG0680031924.01.T01

ATGCTCTTGAGAAGGGATATGCAAAACATGGAGATATTATTCCGATTTCTTTGTTTATGTATCAAAATAGTCGAACTCCATGTGTGTATTATGGCTTGGAGGATAGAATTGTCTGATGAAGCAATTGCATTCCATCTGTTTAGTTCCACAGTAGTGGTTGGAAGTGGTACTTCTATTGATAGTATATCTTGCTTATGGCTACAATTATGGTGGTGCACTGTCATACATTCTTCTAAGCATAAGCAGTTGGTTTATGGCTCTATCCTGGTTGTTTGCTCCCTATTTATTCAACCCGTCAGGATTGAGTGGCAAAAGTATGCCTCTCATCTACTGAATTTCTCTCTTATTGTGTATTTTAGGGTAGTGGTAGACTTCCGAGACTGGACAAATTGGCTACTTTACAGAGGTGGAATTGGTGTTAAGGAAGAAGAAAGCTGGGAAGCTTGGTGGGAAGAAGAACTGGCTCATATCAGGAGCTTGGGTTCAAGGATTGCAGAGACCATCCTGAGTCTGAGATTTTTCATTTTCCAATATGGCATTGTGTATAAGCTTAACATAAAAGGAACTGATACTTCATTGACGGTTTATGGATTATCATGGGTCGTGTTGGCAGTGCTAATAATTCTTTTTAAGGTATTCACCTTTAGCCAGAAGATATCCTTTTTGTTGCGGTTTGTACAAGGATTATCCCTTTTGTTGGCACTGGCTGGTTTGGTTGTAGCAATTATATTAACGGACCTATCTGTACCGGACATATTTGCTTCTATTTTAGCATTCATTCCTACTGGATGGGGAATTTTATCGATTGCTGCTGCATGGAAGCCTGTGATGAAAAGGCTAGGACTATGGAAGTTCATTCGGTCGCTTGCACGTCTATATGATGCTGGCATGGGAATGCTCATCTTTGTGCCCATTGCATTCTTTTCGTGGTTTCCATTTGTATCAACATTCCAAACTCGCCTGATGTTTAACCCGGCTTTTAGCCGAGGGTTAGAAATTTCTTTAATCCTTGCTGGGAACAATCCCAATACTGGGATATAG
Protein sequence

>MsG0680031924.01.T01

MLLRRDMQNMEILFRFLCLCIKIVELHVCIMAWRIELSDEAIAFHLFSSTVVVGSGTSIDSISCLWLQLWWCTVIHSSKHKQLVYGSILVVCSLFIQPVRIEWQKYASHLLNFSLIVYFRVVVDFRDWTNWLLYRGGIGVKEEESWEAWWEEELAHIRSLGSRIAETILSLRFFIFQYGIVYKLNIKGTDTSLTVYGLSWVVLAVLIILFKVFTFSQKISFLLRFVQGLSLLLALAGLVVAIILTDLSVPDIFASILAFIPTGWGILSIAAAWKPVMKRLGLWKFIRSLARLYDAGMGMLIFVPIAFFSWFPFVSTFQTRLMFNPAFSRGLEISLILAGNNPNTGI*