AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041239.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041239.01.T01 MTR_7g107390 88.950 181 13 2 1 174 1 181 3.51e-107 312
MsG0780041239.01.T01 MTR_7g107390 88.950 181 13 2 1 174 1 181 4.81e-107 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041239.01.T01 AT3G58460 69.143 175 47 1 7 174 1 175 9.18e-82 248
MsG0780041239.01.T01 AT3G58460 67.665 167 47 1 15 174 32 198 3.94e-75 231

Find 97 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTACCTAGTGGTTGAATT+TGG 0.145964 7:+88633115 None:intergenic
TTTACCTCAGTGACGATATT+TGG 0.185705 7:+88636415 None:intergenic
TCTTTACTTCGTTTGTCTTT+TGG 0.225345 7:-88636174 MsG0780041239.01.T01:intron
GCATGCAACAATTTCAGTTT+TGG 0.231338 7:+88636458 None:intergenic
CATGATGGCTTTAGTTCCTT+TGG 0.232375 7:-88635517 MsG0780041239.01.T01:CDS
AGACTCCATCGCTAACAATT+TGG 0.273830 7:-88630204 MsG0780041239.01.T01:three_prime_UTR
CTTTCACTCTTCCTCAGTTC+GGG 0.293434 7:+88636562 None:intergenic
TGAATAAAATTAGACAATTA+AGG 0.314021 7:+88630964 None:intergenic
CTTACCTAGTGGTTGAATTT+GGG 0.317996 7:+88633116 None:intergenic
TCTCTACCTCGTCTTGAATA+TGG 0.318230 7:-88630023 MsG0780041239.01.T01:three_prime_UTR
TTGTAGCAATGGGCTTTGAT+AGG 0.321891 7:-88630767 MsG0780041239.01.T01:three_prime_UTR
ATATTTGGTCTCATAGTTCT+TGG 0.323261 7:+88636430 None:intergenic
CTTGTTGTTTCAGATACATT+TGG 0.325633 7:-88634114 MsG0780041239.01.T01:intron
CTTGTTTATTTCCTCATACC+TGG 0.332242 7:-88634091 MsG0780041239.01.T01:three_prime_UTR
TCTTTCACTCTTCCTCAGTT+CGG 0.336715 7:+88636561 None:intergenic
ATGATGGCTTTAGTTCCTTT+GGG 0.338505 7:-88635516 MsG0780041239.01.T01:CDS
GAATTTGGGCTTGTATTTGT+AGG 0.352564 7:+88633130 None:intergenic
CTCATGAATGAGTGTGCTAT+TGG 0.353425 7:-88635360 MsG0780041239.01.T01:CDS
AATACATGAAAAGCTTATCT+TGG 0.360952 7:-88630273 MsG0780041239.01.T01:three_prime_UTR
TCTTCAATTGAGCCTCCTCC+TGG 0.381581 7:-88634056 MsG0780041239.01.T01:three_prime_UTR
CACCATTGATTCACCCTAGT+TGG 0.381945 7:+88636245 None:intergenic
CACAGGCAGGGTTGCCAACT+AGG 0.401860 7:-88636259 MsG0780041239.01.T01:intron
TTTGAGGCATCAATGATGAT+AGG 0.410970 7:+88632981 None:intergenic
CTCTGAGCTGGAAAGGATCA+TGG 0.411538 7:-88635493 MsG0780041239.01.T01:CDS
AGTTCCTTTGGGCTCTGAGC+TGG 0.412768 7:-88635505 MsG0780041239.01.T01:CDS
AACAGTGTCAGGGAAGTCTC+TGG 0.425147 7:+88630246 None:intergenic
ACAAGCACAACAACAGTGTC+AGG 0.435125 7:+88630235 None:intergenic
TTTGCACGGGCGGAAATCCT+CGG 0.438143 7:-88633161 MsG0780041239.01.T01:three_prime_UTR
ATTAAGAAACTTGTAGCAAT+GGG 0.448179 7:-88630777 MsG0780041239.01.T01:three_prime_UTR
AATTTGGGCTTGTATTTGTA+GGG 0.448368 7:+88633131 None:intergenic
TTGTTTATTTCCTCATACCT+GGG 0.449496 7:-88634090 MsG0780041239.01.T01:three_prime_UTR
GTCGATAATGCAGCTACAAC+AGG 0.451391 7:-88630933 MsG0780041239.01.T01:three_prime_UTR
CTTTGGGCTCTGAGCTGGAA+AGG 0.453377 7:-88635500 MsG0780041239.01.T01:CDS
TCATGTTCTCTTCAACATGA+TGG 0.454685 7:-88635532 MsG0780041239.01.T01:CDS
GTAGCGCTGGCGGCGGCTGA+TGG 0.465406 7:-88630452 MsG0780041239.01.T01:three_prime_UTR
AGCAGCTGTTCCACATCATC+AGG 0.466946 7:-88630910 MsG0780041239.01.T01:intron
TCATGAATGAGTGTGCTATT+GGG 0.470067 7:-88635359 MsG0780041239.01.T01:CDS
TCCGAAATTTATTGTTTGCA+CGG 0.477584 7:-88633175 MsG0780041239.01.T01:three_prime_UTR
AGTGGAAGTAGCGCTGGCGG+CGG 0.478701 7:-88630459 MsG0780041239.01.T01:three_prime_UTR
AATTGTACTCACCACTTGGC+AGG 0.481412 7:+88634651 None:intergenic
ATTCAAGACGAGGTAGAGAA+TGG 0.485369 7:+88630027 None:intergenic
CCCCTATGAATGCAGGGAGC+AGG 0.489395 7:-88630816 MsG0780041239.01.T01:intron
CCGAAATTTATTGTTTGCAC+GGG 0.491860 7:-88633174 MsG0780041239.01.T01:three_prime_UTR
CTGAATGGCCATGGCATTAG+CGG 0.492027 7:+88629974 None:intergenic
CCCGTGCAAACAATAAATTT+CGG 0.497861 7:+88633174 None:intergenic
GGAAATACTCATGAGCCAAC+AGG 0.498360 7:-88630411 MsG0780041239.01.T01:intron
TTGCACGGGCGGAAATCCTC+GGG 0.498835 7:-88633160 MsG0780041239.01.T01:three_prime_UTR
AAATTTATTGTTTGCACGGG+CGG 0.507340 7:-88633171 MsG0780041239.01.T01:three_prime_UTR
GATTAAGAAACTTGTAGCAA+TGG 0.510062 7:-88630778 MsG0780041239.01.T01:three_prime_UTR
TGTAGCAATGGGCTTTGATA+GGG 0.510841 7:-88630766 MsG0780041239.01.T01:intron
TACAATCCTATTCTTACGAA+TGG 0.511251 7:-88635387 MsG0780041239.01.T01:CDS
AGATAACCATTCGTAAGAAT+AGG 0.513748 7:+88635381 None:intergenic
TGAGTAGACACTTCTCTTTG+AGG 0.517585 7:+88632965 None:intergenic
TAAATGATGTCCCAGGTATG+AGG 0.519976 7:+88634080 None:intergenic
ATCAACACACTACGCTTATG+TGG 0.520509 7:+88630139 None:intergenic
GACGCAAGTGGAAGTAGCGC+TGG 0.523639 7:-88630465 MsG0780041239.01.T01:three_prime_UTR
TGCCAACTAGGGTGAATCAA+TGG 0.541751 7:-88636247 MsG0780041239.01.T01:CDS
AAAGAGATTACTTACAAGCC+AGG 0.542002 7:+88634038 None:intergenic
CAGTGAACCATGGAAAAGAA+TGG 0.547386 7:+88635557 None:intergenic
GAGAAGTGTCTACTCACCTC+AGG 0.550773 7:-88632958 MsG0780041239.01.T01:three_prime_UTR
TTCAAGACGAGGTAGAGAAT+GGG 0.555077 7:+88630028 None:intergenic
GAGGTAGAGAATGGGTGAGC+GGG 0.558459 7:+88630036 None:intergenic
TAAGTAAATACCTGATGATG+TGG 0.560765 7:+88630900 None:intergenic
TCTGAGCTGGAAAGGATCAT+GGG 0.562690 7:-88635492 MsG0780041239.01.T01:CDS
ACAGGCAGGGTTGCCAACTA+GGG 0.563955 7:-88636258 MsG0780041239.01.T01:intron
TGCAGCTTACTGAATGGCCA+TGG 0.568669 7:+88629965 None:intergenic
CCAGCAGTGCTATGAAAACA+TGG 0.569062 7:+88635415 None:intergenic
ATTACTTACAAGCCAGGAGG+AGG 0.575287 7:+88634044 None:intergenic
TGTCACCAAATTGTTAGCGA+TGG 0.578964 7:+88630199 None:intergenic
CAAGCCCAAATTCAACCACT+AGG 0.585727 7:-88633120 MsG0780041239.01.T01:intron
ACAGTGTCAGGGAAGTCTCT+GGG 0.595422 7:+88630247 None:intergenic
GAACATGAAGCAGTGAACCA+TGG 0.595771 7:+88635547 None:intergenic
CAACTAGGGTGAATCAATGG+TGG 0.600354 7:-88636244 MsG0780041239.01.T01:CDS
TGAAGAATAAATGATGTCCC+AGG 0.603433 7:+88634073 None:intergenic
TGGTGATCTTAATGTGGCAG+TGG 0.610866 7:-88630432 MsG0780041239.01.T01:three_prime_UTR
AACTAGGGTGAATCAATGGT+GGG 0.612660 7:-88636243 MsG0780041239.01.T01:CDS
ACTTTCAGTCATCATGTGTG+AGG 0.618682 7:-88633200 MsG0780041239.01.T01:intron
AGAGAACACCGCTAATGCCA+TGG 0.618953 7:-88629982 MsG0780041239.01.T01:three_prime_UTR
GCAAGTGGAAGTAGCGCTGG+CGG 0.620677 7:-88630462 MsG0780041239.01.T01:three_prime_UTR
TCTGCTGTGGTTATTGTCTG+CGG 0.626757 7:-88636200 MsG0780041239.01.T01:CDS
CGAGGTAGAGAATGGGTGAG+CGG 0.646241 7:+88630035 None:intergenic
TGTTTAATGTGCCTGCCAAG+TGG 0.646614 7:-88634662 MsG0780041239.01.T01:intron
TCCTCGATTGAACTCCACTC+AGG 0.648381 7:+88635295 None:intergenic
GCCTGAGTGGAGTTCAATCG+AGG 0.658593 7:-88635296 MsG0780041239.01.T01:CDS
GGCTGATGGTGATCTTAATG+TGG 0.662077 7:-88630438 MsG0780041239.01.T01:three_prime_UTR
TGGGATTTCAACCCGAACTG+AGG 0.663257 7:-88636573 None:intergenic
CTTTCCAGCTCAGAGCCCAA+AGG 0.663659 7:+88635501 None:intergenic
CAAGCACAACAACAGTGTCA+GGG 0.665191 7:+88630236 None:intergenic
GTTATAGAGACAAGCCTGAG+TGG 0.670589 7:-88635309 MsG0780041239.01.T01:CDS
ATTTGTAGGGATATAGCCCG+AGG 0.683644 7:+88633144 None:intergenic
GGTATGCTTTCAGACGCAAG+TGG 0.686207 7:-88630477 MsG0780041239.01.T01:intron
TGTGTTGATGTCTAATAACA+AGG 0.701007 7:-88630125 MsG0780041239.01.T01:three_prime_UTR
TGAGTGGAGTTCAATCGAGG+AGG 0.701524 7:-88635293 MsG0780041239.01.T01:intron
AAACAACCATATTCAAGACG+AGG 0.706231 7:+88630017 None:intergenic
CAAGATGAGTCACATACCTG+AGG 0.708074 7:+88632942 None:intergenic
GAGATTACTTACAAGCCAGG+AGG 0.728496 7:+88634041 None:intergenic
GAGACCAAATATCGTCACTG+AGG 0.740628 7:-88636419 MsG0780041239.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTTTTTTAATTTA+AGG - Chr7:88632042-88632061 MsG0780041239.01.T01:intron 0.0%
!! TTAAATTATTTAAAAGTTTC+AGG - Chr7:88632955-88632974 MsG0780041239.01.T01:three_prime_UTR 10.0%
!! TTTATAATGAAAAAGAAAAA+TGG - Chr7:88633188-88633207 MsG0780041239.01.T01:three_prime_UTR 10.0%
!!! AAACAAATAAATTTTAAACA+GGG + Chr7:88631941-88631960 None:intergenic 10.0%
!!! ATTTTATAATGATTAATTCT+TGG - Chr7:88634884-88634903 MsG0780041239.01.T01:intron 10.0%
!!! TAAACAAATAAATTTTAAAC+AGG + Chr7:88631942-88631961 None:intergenic 10.0%
!!! TAATTATATTCTTTTAATCT+CGG + Chr7:88632022-88632041 None:intergenic 10.0%
!! AGTGTTTAATATTTGTAATT+GGG + Chr7:88632619-88632638 None:intergenic 15.0%
!! CTATAATATTATTCAAAAGT+TGG - Chr7:88635507-88635526 MsG0780041239.01.T01:CDS 15.0%
!! GAAATTAATATTATGCATAA+TGG - Chr7:88635061-88635080 MsG0780041239.01.T01:intron 15.0%
!! TAAAGATTTATGCTAATATA+TGG - Chr7:88635103-88635122 MsG0780041239.01.T01:intron 15.0%
!! TGAATAAAATTAGACAATTA+AGG + Chr7:88635552-88635571 None:intergenic 15.0%
!!! AAAATGGATTAAAGTTTTAT+AGG - Chr7:88631531-88631550 MsG0780041239.01.T01:intron 15.0%
!!! CATAAAAGATTATTTTAAGA+AGG - Chr7:88631418-88631437 MsG0780041239.01.T01:intron 15.0%
!!! TATTGATAATGTTTTGTTTT+TGG - Chr7:88636199-88636218 MsG0780041239.01.T01:CDS 15.0%
!!! TCTATAAAATTTGCAAATTT+TGG + Chr7:88631564-88631583 None:intergenic 15.0%
!!! TTAATTGTCTAATTTTATTC+AGG - Chr7:88635551-88635570 MsG0780041239.01.T01:CDS 15.0%
!!! TTTATTGTCAGTAAAATTTT+AGG - Chr7:88634659-88634678 MsG0780041239.01.T01:intron 15.0%
!! AAATCCAGTTGTTATAAAAA+AGG + Chr7:88632182-88632201 None:intergenic 20.0%
!! AACTAAGAAAAATATGACTT+TGG + Chr7:88634691-88634710 None:intergenic 20.0%
!! AACTATTAATGCATTAAAAG+AGG + Chr7:88633960-88633979 None:intergenic 20.0%
!! AATCTAACCATCAAATTATT+AGG + Chr7:88635893-88635912 None:intergenic 20.0%
!! ACTATTAATGCATTAAAAGA+GGG + Chr7:88633959-88633978 None:intergenic 20.0%
!! AGTTAATCAATTAGTTAGTT+GGG + Chr7:88632769-88632788 None:intergenic 20.0%
!! ATAAGAAATATACATGATAC+TGG - Chr7:88635160-88635179 MsG0780041239.01.T01:intron 20.0%
!! ATTCAAATTCAATTAACCAT+TGG - Chr7:88633041-88633060 MsG0780041239.01.T01:intron 20.0%
!! ATTGAATTTGAATCAATATG+TGG + Chr7:88633034-88633053 None:intergenic 20.0%
!! ATTGTCAATAAATAAGAACA+GGG + Chr7:88632721-88632740 None:intergenic 20.0%
!! CAGTGTTTAATATTTGTAAT+TGG + Chr7:88632620-88632639 None:intergenic 20.0%
!! GATAATTTATACGCTTAATT+TGG + Chr7:88635842-88635861 None:intergenic 20.0%
!! GTGTTTAATATTTGTAATTG+GGG + Chr7:88632618-88632637 None:intergenic 20.0%
!! TAAATGAAAGTAAAAGACAA+TGG - Chr7:88630514-88630533 MsG0780041239.01.T01:intron 20.0%
!! TAGTTAATCAATTAGTTAGT+TGG + Chr7:88632770-88632789 None:intergenic 20.0%
!! TGCATAATATTAATTTCCAA+TGG + Chr7:88635058-88635077 None:intergenic 20.0%
!! TGCATTTATCTTTCAAAAAA+TGG + Chr7:88633236-88633255 None:intergenic 20.0%
!! TTCCAATTATATCAATGAAA+GGG - Chr7:88635237-88635256 MsG0780041239.01.T01:intron 20.0%
!! TTGAAAAAAGAAATTCAACT+AGG + Chr7:88636129-88636148 None:intergenic 20.0%
!! TTTCCAATTATATCAATGAA+AGG - Chr7:88635236-88635255 MsG0780041239.01.T01:intron 20.0%
!!! AAAAGGCTTAAATATGTTTT+GGG + Chr7:88631589-88631608 None:intergenic 20.0%
!!! AAGATTTTCTGAAACAAATA+GGG - Chr7:88634025-88634044 MsG0780041239.01.T01:intron 20.0%
!!! ATTTTAAACATGCATTTTCA+TGG - Chr7:88633474-88633493 MsG0780041239.01.T01:intron 20.0%
!!! CTTGTTTTCTTTATATAATC+TGG - Chr7:88635652-88635671 MsG0780041239.01.T01:intron 20.0%
!!! TAAGATTTTCTGAAACAAAT+AGG - Chr7:88634024-88634043 MsG0780041239.01.T01:intron 20.0%
!!! TAAGCAAGTACAATTTTAAT+AGG - Chr7:88632069-88632088 MsG0780041239.01.T01:intron 20.0%
!!! TAATCCTTTTTTATAACAAC+TGG - Chr7:88632175-88632194 MsG0780041239.01.T01:intron 20.0%
!!! TTTTAAACATGCATTTTCAT+GGG - Chr7:88633475-88633494 MsG0780041239.01.T01:intron 20.0%
!!! TTTTAAGTGATCAAGAAAAA+TGG - Chr7:88635788-88635807 MsG0780041239.01.T01:intron 20.0%
!!! TTTTATAACAACTGGATTTT+GGG - Chr7:88632183-88632202 MsG0780041239.01.T01:intron 20.0%
!!! TTTTTATAACAACTGGATTT+TGG - Chr7:88632182-88632201 MsG0780041239.01.T01:intron 20.0%
! AAAAAGCAAAATTGAGCTAT+AGG + Chr7:88636003-88636022 None:intergenic 25.0%
! AAACAAGTTATTATTGTCCA+TGG + Chr7:88634838-88634857 None:intergenic 25.0%
! AAAGATAGAAAAGTAAAAGG+AGG + Chr7:88632336-88632355 None:intergenic 25.0%
! AACCCTTTCATTGATATAAT+TGG + Chr7:88635242-88635261 None:intergenic 25.0%
! AATACATGAAAAGCTTATCT+TGG - Chr7:88636240-88636259 MsG0780041239.01.T01:CDS 25.0%
! AGTTAAACTGCTATATTAGT+AGG - Chr7:88635470-88635489 MsG0780041239.01.T01:CDS 25.0%
! ATAAAAACTTCACCTCATTA+TGG - Chr7:88634175-88634194 MsG0780041239.01.T01:intron 25.0%
! ATAATCAGATATCCGTTAAT+GGG - Chr7:88635189-88635208 MsG0780041239.01.T01:intron 25.0%
! ATATAAATATAGCTGCTGTT+GGG - Chr7:88631249-88631268 MsG0780041239.01.T01:intron 25.0%
! ATATATAAGACACCAAAGAA+AGG + Chr7:88630689-88630708 None:intergenic 25.0%
! ATTAAGAAACTTGTAGCAAT+GGG - Chr7:88635736-88635755 MsG0780041239.01.T01:intron 25.0%
! ATTTCAAGCTGTTTATTAAC+TGG - Chr7:88634259-88634278 MsG0780041239.01.T01:intron 25.0%
! CAATATCTTGCATTATTCTT+CGG - Chr7:88630439-88630458 MsG0780041239.01.T01:three_prime_UTR 25.0%
! CATTGTCAATAAATAAGAAC+AGG + Chr7:88632722-88632741 None:intergenic 25.0%
! CGTTTAAGAATGGTTAATTA+GGG - Chr7:88630204-88630223 MsG0780041239.01.T01:three_prime_UTR 25.0%
! GGAAAAGATAGAAAAGTAAA+AGG + Chr7:88632339-88632358 None:intergenic 25.0%
! GTTAATCAATTAGTTAGTTG+GGG + Chr7:88632768-88632787 None:intergenic 25.0%
! TAAAAACTTCACCTCATTAT+GGG - Chr7:88634176-88634195 MsG0780041239.01.T01:intron 25.0%
! TATAATCAGATATCCGTTAA+TGG - Chr7:88635188-88635207 MsG0780041239.01.T01:intron 25.0%
! TATATAAATATAGCTGCTGT+TGG - Chr7:88631248-88631267 MsG0780041239.01.T01:intron 25.0%
! TATCATTATCATCGTATATG+CGG - Chr7:88633260-88633279 MsG0780041239.01.T01:intron 25.0%
! TCGTTTAAGAATGGTTAATT+AGG - Chr7:88630203-88630222 MsG0780041239.01.T01:three_prime_UTR 25.0%
! TGCATTAATAGTTCTTCTTT+AGG - Chr7:88633967-88633986 MsG0780041239.01.T01:intron 25.0%
! TGGTCATTCATAATTAATCA+AGG - Chr7:88634075-88634094 MsG0780041239.01.T01:three_prime_UTR 25.0%
! TTAAAACTAACCAGCTATTT+GGG + Chr7:88634007-88634026 None:intergenic 25.0%
! TTACTTTAATCTTCTGTTGA+TGG + Chr7:88630497-88630516 None:intergenic 25.0%
! TTCAAAAAATGGATGTCTAT+TGG + Chr7:88633225-88633244 None:intergenic 25.0%
! TTGTAACACTCAAATACAAA+CGG + Chr7:88630609-88630628 None:intergenic 25.0%
!! CAAAAGGCTTAAATATGTTT+TGG + Chr7:88631590-88631609 None:intergenic 25.0%
!! GAAAATGCATGTTTAAAATG+AGG + Chr7:88633473-88633492 None:intergenic 25.0%
!! TCACTTATTGAACTTTTACT+CGG - Chr7:88635926-88635945 MsG0780041239.01.T01:intron 25.0%
!! TTTAAACATGCATTTTCATG+GGG - Chr7:88633476-88633495 MsG0780041239.01.T01:intron 25.0%
!!! ACATTGCTTTTGTTAAATAC+AGG + Chr7:88631970-88631989 None:intergenic 25.0%
!!! CATTGCTTTTGTTAAATACA+GGG + Chr7:88631969-88631988 None:intergenic 25.0%
!!! GAATATTTTCTGGGAATATT+TGG - Chr7:88633504-88633523 MsG0780041239.01.T01:intron 25.0%
!!! GCATCACATTTTAATATCAT+AGG + Chr7:88632380-88632399 None:intergenic 25.0%
!!! GCTATTTTTTCGTTTAAGAA+TGG - Chr7:88630194-88630213 MsG0780041239.01.T01:three_prime_UTR 25.0%
!!! TTAGGTATGCATTTTTTTGT+TGG - Chr7:88632216-88632235 MsG0780041239.01.T01:intron 25.0%
!!! TTTGGTGTCTTATATATATG+AGG - Chr7:88630692-88630711 MsG0780041239.01.T01:intron 25.0%
AAATTGCATATTGCCAATAG+TGG + Chr7:88631282-88631301 None:intergenic 30.0%
AATTTGGGCTTGTATTTGTA+GGG + Chr7:88633385-88633404 None:intergenic 30.0%
ACATACAACTTGAACTATTG+TGG + Chr7:88635030-88635049 None:intergenic 30.0%
ACTATGTCTTGCATAAAAGT+AGG + Chr7:88634344-88634363 None:intergenic 30.0%
ACTGAACAAGTTATATTGAC+TGG - Chr7:88633122-88633141 MsG0780041239.01.T01:three_prime_UTR 30.0%
AGATAACCATTCGTAAGAAT+AGG + Chr7:88631135-88631154 None:intergenic 30.0%
AGATACATTAACAACTCCAA+TGG + Chr7:88633060-88633079 None:intergenic 30.0%
ATAGTTAATGCAAGTTTCCA+TGG - Chr7:88634359-88634378 MsG0780041239.01.T01:intron 30.0%
ATATTTGGTCTCATAGTTCT+TGG + Chr7:88630086-88630105 None:intergenic 30.0%
ATTCTAAGTACTAGGTATGA+GGG - Chr7:88634600-88634619 MsG0780041239.01.T01:intron 30.0%
ATTTGCGAAAACAAATGCAA+TGG - Chr7:88633795-88633814 MsG0780041239.01.T01:intron 30.0%
CATAATTAATCAAGGATCCA+TGG - Chr7:88634083-88634102 MsG0780041239.01.T01:three_prime_UTR 30.0%
CATCAAATTATTAGGCAAGA+AGG + Chr7:88635885-88635904 None:intergenic 30.0%
CATTCAATATTCCCATAATG+AGG + Chr7:88634190-88634209 None:intergenic 30.0%
CTATGTCTTGCATAAAAGTA+GGG + Chr7:88634343-88634362 None:intergenic 30.0%
CTTAAAACTAACCAGCTATT+TGG + Chr7:88634008-88634027 None:intergenic 30.0%
CTTCTTGCCTAATAATTTGA+TGG - Chr7:88635883-88635902 MsG0780041239.01.T01:intron 30.0%
CTTTAGTCTGGACTTAAATA+GGG + Chr7:88631491-88631510 None:intergenic 30.0%
GACATATGATTCAAGTGAAA+AGG + Chr7:88634231-88634250 None:intergenic 30.0%
GAGCTCTTACATATGATATT+TGG - Chr7:88633705-88633724 MsG0780041239.01.T01:intron 30.0%
GATTAAGAAACTTGTAGCAA+TGG - Chr7:88635735-88635754 MsG0780041239.01.T01:intron 30.0%
GATTTGAATACTGTATCTTG+AGG - Chr7:88630762-88630781 MsG0780041239.01.T01:intron 30.0%
GTGAACAAATGCTATGAAAT+TGG - Chr7:88633650-88633669 MsG0780041239.01.T01:intron 30.0%
GTTGCATTTGCATGATATTA+AGG - Chr7:88632547-88632566 MsG0780041239.01.T01:intron 30.0%
TACAATCCTATTCTTACGAA+TGG - Chr7:88631126-88631145 MsG0780041239.01.T01:intron 30.0%
TACTGTATCTTGAGGATATA+AGG - Chr7:88630770-88630789 MsG0780041239.01.T01:three_prime_UTR 30.0%
TATAAATATAGCTGCTGTTG+GGG - Chr7:88631250-88631269 MsG0780041239.01.T01:intron 30.0%
TATAACTTCTCTATAGTCTG+AGG + Chr7:88630583-88630602 None:intergenic 30.0%
TATCATGCAAATGCAACTAA+TGG + Chr7:88632544-88632563 None:intergenic 30.0%
TCCGAAATTTATTGTTTGCA+CGG - Chr7:88633338-88633357 MsG0780041239.01.T01:intron 30.0%
TCTTTAGTCTGGACTTAAAT+AGG + Chr7:88631492-88631511 None:intergenic 30.0%
TGATTATGCTTAATTGACAC+AGG - Chr7:88630237-88630256 MsG0780041239.01.T01:three_prime_UTR 30.0%
TGCTTCTCAATGTTAAAATG+TGG - Chr7:88631449-88631468 MsG0780041239.01.T01:intron 30.0%
TTAATGTACATTTGATGCAC+AGG + Chr7:88635978-88635997 None:intergenic 30.0%
TTGCATAAAAGTAGGGATAT+AGG + Chr7:88634336-88634355 None:intergenic 30.0%
TTGTCATTATCATGGGAAAT+GGG - Chr7:88635377-88635396 MsG0780041239.01.T01:CDS 30.0%
TTGTTTATTTCCTCATACCT+GGG - Chr7:88632423-88632442 MsG0780041239.01.T01:intron 30.0%
! ACAGTTTCTGGAAGTAAAAA+TGG - Chr7:88631515-88631534 MsG0780041239.01.T01:intron 30.0%
! ACATATTTAAGCCTTTTGAG+AGG - Chr7:88631592-88631611 MsG0780041239.01.T01:intron 30.0%
! ATCTGGATTTTACTAGGTTT+GGG - Chr7:88635320-88635339 MsG0780041239.01.T01:CDS 30.0%
! ATTCATTTTGCAGTGTGTTT+GGG - Chr7:88631827-88631846 MsG0780041239.01.T01:intron 30.0%
! ATTCTGTTCATATGTTTTCG+AGG + Chr7:88636340-88636359 None:intergenic 30.0%
! ATTTTGGGCATATTATGGTT+AGG - Chr7:88632198-88632217 MsG0780041239.01.T01:intron 30.0%
! CATGCAACAATTTCAGTTTT+GGG + Chr7:88630057-88630076 None:intergenic 30.0%
! CTTATCATCTGGATTTTACT+AGG - Chr7:88635314-88635333 MsG0780041239.01.T01:CDS 30.0%
! CTTTTCAGATATAGTTACTC+AGG + Chr7:88630831-88630850 None:intergenic 30.0%
! GCTATATGTCACTATTTTGT+TGG - Chr7:88631056-88631075 MsG0780041239.01.T01:intron 30.0%
! GTTAATGTATCTCCATTTTC+TGG - Chr7:88633068-88633087 MsG0780041239.01.T01:intron 30.0%
! GTTACCTATCAAGTTCTAAT+CGG - Chr7:88632799-88632818 MsG0780041239.01.T01:intron 30.0%
! GTTTTGCAAATAGAAGTTTG+TGG - Chr7:88636432-88636451 MsG0780041239.01.T01:CDS 30.0%
! GTTTTTGAATTTCGTGCTAT+TGG - Chr7:88630865-88630884 MsG0780041239.01.T01:intron 30.0%
! TAACGACCATTTTACAACTT+GGG - Chr7:88630738-88630757 MsG0780041239.01.T01:intron 30.0%
! TAAGTAAATACCTGATGATG+TGG + Chr7:88635616-88635635 None:intergenic 30.0%
! TATTCATTTTGCAGTGTGTT+TGG - Chr7:88631826-88631845 MsG0780041239.01.T01:intron 30.0%
! TCTTTACTTCGTTTGTCTTT+TGG - Chr7:88630339-88630358 MsG0780041239.01.T01:intron 30.0%
! TGTGTTGATGTCTAATAACA+AGG - Chr7:88636388-88636407 MsG0780041239.01.T01:intron 30.0%
! TTAGAGCATTATATTGACCA+TGG + Chr7:88634103-88634122 None:intergenic 30.0%
! TTATTGAACTTTTACTCGGA+TGG - Chr7:88635930-88635949 MsG0780041239.01.T01:intron 30.0%
! TTGTGTTTTATGCAGTTTAC+AGG - Chr7:88630923-88630942 MsG0780041239.01.T01:three_prime_UTR 30.0%
! TTTTATTGCAGCTTACTGAA+TGG + Chr7:88636557-88636576 None:intergenic 30.0%
! TTTTGGTCATCACATTTACA+GGG - Chr7:88636216-88636235 MsG0780041239.01.T01:CDS 30.0%
!! CATATTTAAGCCTTTTGAGA+GGG - Chr7:88631593-88631612 MsG0780041239.01.T01:intron 30.0%
!! CTTGTTGTTTCAGATACATT+TGG - Chr7:88632399-88632418 MsG0780041239.01.T01:intron 30.0%
!! TATTTTCTGGGAATATTTGG+AGG - Chr7:88633507-88633526 MsG0780041239.01.T01:intron 30.0%
!! TGCTTTTTATGCGTTTTTCT+TGG - Chr7:88636015-88636034 MsG0780041239.01.T01:intron 30.0%
!! TTTTTGGTCATCACATTTAC+AGG - Chr7:88636215-88636234 MsG0780041239.01.T01:CDS 30.0%
!!! AACAATTTCAGTTTTGGGAA+TGG + Chr7:88630052-88630071 None:intergenic 30.0%
!!! GATATAGTGTGTTTTTTCCT+AGG - Chr7:88634749-88634768 MsG0780041239.01.T01:intron 30.0%
AAACAACCATATTCAAGACG+AGG + Chr7:88636499-88636518 None:intergenic 35.0%
AAAGAGATTACTTACAAGCC+AGG + Chr7:88632478-88632497 None:intergenic 35.0%
AAATCCCCCAAGTTGTAAAA+TGG + Chr7:88630747-88630766 None:intergenic 35.0%
AAATTTATTGTTTGCACGGG+CGG - Chr7:88633342-88633361 MsG0780041239.01.T01:intron 35.0%
AAGCAATAAACGATTTAGCG+AGG + Chr7:88630136-88630155 None:intergenic 35.0%
AAGTTGTATGTCATAGCCAT+TGG - Chr7:88635039-88635058 MsG0780041239.01.T01:intron 35.0%
AATATAGACCGCAAAAACCA+TGG + Chr7:88634379-88634398 None:intergenic 35.0%
ACAAATTCGTGAATCTGCAA+GGG - Chr7:88631787-88631806 MsG0780041239.01.T01:intron 35.0%
ACAACCGATTAGAACTTGAT+AGG + Chr7:88632806-88632825 None:intergenic 35.0%
ACTAATTGATTAACTAGCCG+AGG - Chr7:88632774-88632793 MsG0780041239.01.T01:intron 35.0%
ACTTACCTAGTGGTTGAATT+TGG + Chr7:88633401-88633420 None:intergenic 35.0%
AGTCTCCTTGTCATTATCAT+GGG - Chr7:88635370-88635389 MsG0780041239.01.T01:CDS 35.0%
AGTGATCAAGAAAAATGGCT+TGG - Chr7:88635793-88635812 MsG0780041239.01.T01:intron 35.0%
ATAGTTACTCAGGACAATTG+AGG + Chr7:88630821-88630840 None:intergenic 35.0%
ATGCAAAATGTCTCACTACT+TGG - Chr7:88632256-88632275 MsG0780041239.01.T01:intron 35.0%
ATGGCAGGAGTTAAACATAA+AGG + Chr7:88633913-88633932 None:intergenic 35.0%
CATTATGAGCAACCCATTAA+CGG + Chr7:88635204-88635223 None:intergenic 35.0%
CATTCTAAGTACTAGGTATG+AGG - Chr7:88634599-88634618 MsG0780041239.01.T01:intron 35.0%
CCCGTGCAAACAATAAATTT+CGG + Chr7:88633342-88633361 None:intergenic 35.0%
CCGAAATTTATTGTTTGCAC+GGG - Chr7:88633339-88633358 MsG0780041239.01.T01:intron 35.0%
CTAATTGATTAACTAGCCGA+GGG - Chr7:88632775-88632794 MsG0780041239.01.T01:intron 35.0%
CTCATACCTAGTACTTAGAA+TGG + Chr7:88634601-88634620 None:intergenic 35.0%
CTTACCTAGTGGTTGAATTT+GGG + Chr7:88633400-88633419 None:intergenic 35.0%
CTTGAACAGCTTGCAAATTA+TGG + Chr7:88631364-88631383 None:intergenic 35.0%
CTTGTCATTATCATGGGAAA+TGG - Chr7:88635376-88635395 MsG0780041239.01.T01:CDS 35.0%
CTTGTTTATTTCCTCATACC+TGG - Chr7:88632422-88632441 MsG0780041239.01.T01:intron 35.0%
GAAAAATTGTACTCACCACT+TGG + Chr7:88631869-88631888 None:intergenic 35.0%
GAAACTGTGATTCTTTAGTC+TGG + Chr7:88631503-88631522 None:intergenic 35.0%
GAATTTGGGCTTGTATTTGT+AGG + Chr7:88633386-88633405 None:intergenic 35.0%
GACTAAAGAATCACAGTTTC+TGG - Chr7:88631503-88631522 MsG0780041239.01.T01:intron 35.0%
GCTCAGTTAAACTTATCATC+TGG - Chr7:88635303-88635322 MsG0780041239.01.T01:CDS 35.0%
GTTTGTAAGTTCCTGTTCTA+AGG - Chr7:88632653-88632672 MsG0780041239.01.T01:intron 35.0%
TAAACACTGCAGAACTTCTA+GGG - Chr7:88632631-88632650 MsG0780041239.01.T01:intron 35.0%
TAAATAAGAACAGGGTTGAG+AGG + Chr7:88632713-88632732 None:intergenic 35.0%
TAATTGATTAACTAGCCGAG+GGG - Chr7:88632776-88632795 MsG0780041239.01.T01:intron 35.0%
TACAAATTCGTGAATCTGCA+AGG - Chr7:88631786-88631805 MsG0780041239.01.T01:intron 35.0%
TAGAATTACAACAATACCCC+TGG - Chr7:88630655-88630674 MsG0780041239.01.T01:intron 35.0%
TAGTCTCCTTGTCATTATCA+TGG - Chr7:88635369-88635388 MsG0780041239.01.T01:CDS 35.0%
TATACTACAGTATCTCTTGC+TGG - Chr7:88635435-88635454 MsG0780041239.01.T01:CDS 35.0%
TATCGTTGTTTGATCCTTCT+GGG - Chr7:88635858-88635877 MsG0780041239.01.T01:intron 35.0%
TATTATTGTCCATGGCAAAC+AGG + Chr7:88634830-88634849 None:intergenic 35.0%
TCATGTTCTCTTCAACATGA+TGG - Chr7:88630981-88631000 MsG0780041239.01.T01:three_prime_UTR 35.0%
TCCACACTAAACCTTACTAA+TGG - Chr7:88633429-88633448 MsG0780041239.01.T01:intron 35.0%
TGAAGAATAAATGATGTCCC+AGG + Chr7:88632443-88632462 None:intergenic 35.0%
TGTAAGAGCTCTATGTACTT+AGG + Chr7:88633696-88633715 None:intergenic 35.0%
TTAAACACTGCAGAACTTCT+AGG - Chr7:88632630-88632649 MsG0780041239.01.T01:intron 35.0%
TTATCGTTGTTTGATCCTTC+TGG - Chr7:88635857-88635876 MsG0780041239.01.T01:intron 35.0%
TTGGATGAGAAAAACGTTCT+AGG + Chr7:88635823-88635842 None:intergenic 35.0%
TTTACCTCAGTGACGATATT+TGG + Chr7:88630101-88630120 None:intergenic 35.0%
! AAAATTACTGACTGCTTGAG+TGG + Chr7:88632989-88633008 None:intergenic 35.0%
! AACGACCATTTTACAACTTG+GGG - Chr7:88630739-88630758 MsG0780041239.01.T01:intron 35.0%
! AATGTATCTCCATTTTCTGG+AGG - Chr7:88633071-88633090 MsG0780041239.01.T01:intron 35.0%
! ACTATTATCCTCTAAGAGTC+TGG + Chr7:88634556-88634575 None:intergenic 35.0%
! ACTGGATTTTGGGCATATTA+TGG - Chr7:88632193-88632212 MsG0780041239.01.T01:intron 35.0%
! AGGTGAGTAGTTCAAGTTAT+TGG + Chr7:88632360-88632379 None:intergenic 35.0%
! ATTCATTAGCCTCCAGAAAA+TGG + Chr7:88633083-88633102 None:intergenic 35.0%
! CATCTGGATTTTACTAGGTT+TGG - Chr7:88635319-88635338 MsG0780041239.01.T01:CDS 35.0%
! CATTTCCCATGATAATGACA+AGG + Chr7:88635378-88635397 None:intergenic 35.0%
! CTAACGACCATTTTACAACT+TGG - Chr7:88630737-88630756 MsG0780041239.01.T01:intron 35.0%
! CTCATCTTGTCTCATGTTTT+TGG - Chr7:88633585-88633604 MsG0780041239.01.T01:intron 35.0%
! CTGACTTGTAAATTGGTTGA+TGG - Chr7:88635264-88635283 MsG0780041239.01.T01:intron 35.0%
! CTTTTATAGCGCACAAAGAT+GGG - Chr7:88632507-88632526 MsG0780041239.01.T01:intron 35.0%
! GATATCTAGTGCCATTAGTA+AGG + Chr7:88633443-88633462 None:intergenic 35.0%
! GCATGCAACAATTTCAGTTT+TGG + Chr7:88630058-88630077 None:intergenic 35.0%
! TACTTCGTTTGTCTTTTGGT+TGG - Chr7:88630343-88630362 MsG0780041239.01.T01:intron 35.0%
! TATACTGCCATTCTTTTCCA+TGG - Chr7:88630949-88630968 MsG0780041239.01.T01:three_prime_UTR 35.0%
! TCATCGCTCAATTCTCATTT+TGG + Chr7:88631626-88631645 None:intergenic 35.0%
! TCATGAATGAGTGTGCTATT+GGG - Chr7:88631154-88631173 MsG0780041239.01.T01:intron 35.0%
! TGCATGATTGGTAACTTATG+TGG - Chr7:88634632-88634651 MsG0780041239.01.T01:intron 35.0%
! TTTCTGAAAACCCAAATAGC+TGG - Chr7:88633994-88634013 MsG0780041239.01.T01:intron 35.0%
! TTTGAGGCATCAATGATGAT+AGG + Chr7:88633535-88633554 None:intergenic 35.0%
!! ATGATATTAAGGCACCGATA+GGG - Chr7:88632558-88632577 MsG0780041239.01.T01:intron 35.0%
!! ATGATGGCTTTAGTTCCTTT+GGG - Chr7:88630997-88631016 MsG0780041239.01.T01:intron 35.0%
!!! ATCTTGTCTCATGTTTTTGG+TGG - Chr7:88633588-88633607 MsG0780041239.01.T01:intron 35.0%
!!! TTAGTTTTAAGATCCGCTCT+GGG - Chr7:88634048-88634067 MsG0780041239.01.T01:intron 35.0%
AACTAGGGTGAATCAATGGT+GGG - Chr7:88630270-88630289 MsG0780041239.01.T01:three_prime_UTR 40.0%
AAGTTAGACGAATAGCGAAC+AGG + Chr7:88633843-88633862 None:intergenic 40.0%
AATTGATTAACTAGCCGAGG+GGG - Chr7:88632777-88632796 MsG0780041239.01.T01:intron 40.0%
ACCACAGCAGAAGTGAAAAA+TGG + Chr7:88630304-88630323 None:intergenic 40.0%
ACTTTCAGTCATCATGTGTG+AGG - Chr7:88633313-88633332 MsG0780041239.01.T01:intron 40.0%
AGACTCCATCGCTAACAATT+TGG - Chr7:88636309-88636328 MsG0780041239.01.T01:intron 40.0%
ATCAACACACTACGCTTATG+TGG + Chr7:88636377-88636396 None:intergenic 40.0%
ATCATGGGAAATGGGAAGTT+AGG - Chr7:88635385-88635404 MsG0780041239.01.T01:CDS 40.0%
ATCCAGCCATTCTAAGTACT+AGG - Chr7:88634592-88634611 MsG0780041239.01.T01:intron 40.0%
ATGCTTAATTGACACAGGCA+GGG - Chr7:88630242-88630261 MsG0780041239.01.T01:three_prime_UTR 40.0%
ATGTTTCCCCTATGAATGCA+GGG - Chr7:88635691-88635710 MsG0780041239.01.T01:intron 40.0%
ATTCAAGACGAGGTAGAGAA+TGG + Chr7:88636489-88636508 None:intergenic 40.0%
CACATGATGACTGAAAGTCA+AGG + Chr7:88633311-88633330 None:intergenic 40.0%
CAGTGAACCATGGAAAAGAA+TGG + Chr7:88630959-88630978 None:intergenic 40.0%
CAGTTGAAATTGACACTCCT+AGG + Chr7:88634769-88634788 None:intergenic 40.0%
CTCATGAATGAGTGTGCTAT+TGG - Chr7:88631153-88631172 MsG0780041239.01.T01:intron 40.0%
GAAATCACAGACTTACCTAG+TGG + Chr7:88633411-88633430 None:intergenic 40.0%
GAAATTCAACTAGGACCTGT+TGG + Chr7:88636120-88636139 None:intergenic 40.0%
GCCATTAGTAAGGTTTAGTG+TGG + Chr7:88633433-88633452 None:intergenic 40.0%
GGCATACTCAACAAGATTAG+TGG - Chr7:88630713-88630732 MsG0780041239.01.T01:intron 40.0%
GTAATGACACAAGTCCCTAT+CGG + Chr7:88632575-88632594 None:intergenic 40.0%
TAAACGATTTAGCGAGGATC+AGG + Chr7:88630130-88630149 None:intergenic 40.0%
TAAATGATGTCCCAGGTATG+AGG + Chr7:88632436-88632455 None:intergenic 40.0%
TACCTAGTACTTAGAATGGC+TGG + Chr7:88634597-88634616 None:intergenic 40.0%
TATGCTTAATTGACACAGGC+AGG - Chr7:88630241-88630260 MsG0780041239.01.T01:three_prime_UTR 40.0%
TATGTTTCCCCTATGAATGC+AGG - Chr7:88635690-88635709 MsG0780041239.01.T01:intron 40.0%
TATTGTACCCTGCACAATGT+CGG + Chr7:88632870-88632889 None:intergenic 40.0%
TCATTGCAGAGTAAACTGCA+AGG + Chr7:88631713-88631732 None:intergenic 40.0%
TCTCTACCTCGTCTTGAATA+TGG - Chr7:88636490-88636509 MsG0780041239.01.T01:five_prime_UTR 40.0%
TCTTTCACTCTTCCTCAGTT+CGG + Chr7:88629955-88629974 None:intergenic 40.0%
TGAGTAGACACTTCTCTTTG+AGG + Chr7:88633551-88633570 None:intergenic 40.0%
TGGAGATAAACCCTCTCAAA+AGG + Chr7:88631606-88631625 None:intergenic 40.0%
TGTCACCAAATTGTTAGCGA+TGG + Chr7:88636317-88636336 None:intergenic 40.0%
TTCAAGACGAGGTAGAGAAT+GGG + Chr7:88636488-88636507 None:intergenic 40.0%
TTGAAATCGCGATACAACAG+CGG + Chr7:88630404-88630423 None:intergenic 40.0%
TTTAACTCCTGCCATTCCTT+TGG - Chr7:88633918-88633937 MsG0780041239.01.T01:intron 40.0%
TTTAACTGAGCAGCAAGCAA+TGG + Chr7:88635294-88635313 None:intergenic 40.0%
! ACCTTTCTGGCATTGTATCT+GGG - Chr7:88632281-88632300 MsG0780041239.01.T01:intron 40.0%
! ACGACCATTTTACAACTTGG+GGG - Chr7:88630740-88630759 MsG0780041239.01.T01:intron 40.0%
! ACTTCTCTATAGTCTGAGGT+AGG + Chr7:88630579-88630598 None:intergenic 40.0%
! AGTCCTCTGAGAGTGAAATT+GGG + Chr7:88632679-88632698 None:intergenic 40.0%
! ATATTTTCCCGACATTGTGC+AGG - Chr7:88632859-88632878 MsG0780041239.01.T01:intron 40.0%
! CACAAAGATGGGAAAGTATG+CGG - Chr7:88632518-88632537 MsG0780041239.01.T01:intron 40.0%
! CATCTTGTTGTGCTTGTTTG+TGG - Chr7:88634287-88634306 MsG0780041239.01.T01:intron 40.0%
! CTGGCTTGAAGATTTGAATC+TGG + Chr7:88634537-88634556 None:intergenic 40.0%
! GCAAGTTTCCATGGTTTTTG+CGG - Chr7:88634368-88634387 MsG0780041239.01.T01:intron 40.0%
! GCTTTTATAGCGCACAAAGA+TGG - Chr7:88632506-88632525 MsG0780041239.01.T01:intron 40.0%
! GTAGTGAGACATTTTGCATG+AGG + Chr7:88632255-88632274 None:intergenic 40.0%
! TAGTCCTCTGAGAGTGAAAT+TGG + Chr7:88632680-88632699 None:intergenic 40.0%
! TATTTTCCCGACATTGTGCA+GGG - Chr7:88632860-88632879 MsG0780041239.01.T01:intron 40.0%
! TGCTTTGACTGATTAGCTGA+TGG - Chr7:88632917-88632936 MsG0780041239.01.T01:intron 40.0%
! TGTAGCAATGGGCTTTGATA+GGG - Chr7:88635747-88635766 MsG0780041239.01.T01:intron 40.0%
! TTGAACTTTTACTCGGATGG+TGG - Chr7:88635933-88635952 MsG0780041239.01.T01:intron 40.0%
! TTGTAGCAATGGGCTTTGAT+AGG - Chr7:88635746-88635765 MsG0780041239.01.T01:intron 40.0%
!! CATGATATTAAGGCACCGAT+AGG - Chr7:88632557-88632576 MsG0780041239.01.T01:intron 40.0%
!! CATGATGGCTTTAGTTCCTT+TGG - Chr7:88630996-88631015 MsG0780041239.01.T01:intron 40.0%
!! CTAGGAGTGTCAATTTCAAC+TGG - Chr7:88634767-88634786 MsG0780041239.01.T01:intron 40.0%
!! GGGTTCACTGACTTGTAAAT+TGG - Chr7:88635257-88635276 MsG0780041239.01.T01:intron 40.0%
!! TAACAGCAGCAACTGCTTTT+TGG - Chr7:88634120-88634139 MsG0780041239.01.T01:intron 40.0%
!! TCCATTTTTCACTTCTGCTG+TGG - Chr7:88630300-88630319 MsG0780041239.01.T01:intron 40.0%
!!! GTTAGTTTTAAGATCCGCTC+TGG - Chr7:88634047-88634066 MsG0780041239.01.T01:intron 40.0%
AACTTGATAGGTAACCCCCT+CGG + Chr7:88632794-88632813 None:intergenic 45.0%
AATGAATGACTCCAGCTGAC+AGG + Chr7:88634404-88634423 None:intergenic 45.0%
AATTGTACTCACCACTTGGC+AGG + Chr7:88631865-88631884 None:intergenic 45.0%
ACAAGCACAACAACAGTGTC+AGG + Chr7:88636281-88636300 None:intergenic 45.0%
ACAGGGTTGAGAGGAAGATA+TGG + Chr7:88632704-88632723 None:intergenic 45.0%
ACCCAGATACAATGCCAGAA+AGG + Chr7:88632285-88632304 None:intergenic 45.0%
AGACACCAAAGAAAGGCAGA+CGG + Chr7:88630682-88630701 None:intergenic 45.0%
ATCCTACAGTTAGATGAGCG+TGG - Chr7:88634791-88634810 MsG0780041239.01.T01:intron 45.0%
ATTACTTACAAGCCAGGAGG+AGG + Chr7:88632472-88632491 None:intergenic 45.0%
ATTGTACCCTGCACAATGTC+GGG + Chr7:88632869-88632888 None:intergenic 45.0%
ATTTGTAGGGATATAGCCCG+AGG + Chr7:88633372-88633391 None:intergenic 45.0%
CAACTAGGGTGAATCAATGG+TGG - Chr7:88630269-88630288 MsG0780041239.01.T01:three_prime_UTR 45.0%
CAAGAAGCAGATCTCGGAAA+AGG + Chr7:88630377-88630396 None:intergenic 45.0%
CAAGATGAGTCACATACCTG+AGG + Chr7:88633574-88633593 None:intergenic 45.0%
CAAGCACAACAACAGTGTCA+GGG + Chr7:88636280-88636299 None:intergenic 45.0%
CAAGCCCAAATTCAACCACT+AGG - Chr7:88633393-88633412 MsG0780041239.01.T01:intron 45.0%
CCAGCAGTGCTATGAAAACA+TGG + Chr7:88631101-88631120 None:intergenic 45.0%
CTTTCACTCTTCCTCAGTTC+GGG + Chr7:88629954-88629973 None:intergenic 45.0%
GAACATGAAGCAGTGAACCA+TGG + Chr7:88630969-88630988 None:intergenic 45.0%
GACGCGATCGATCTTTGTTA+AGG - Chr7:88630536-88630555 MsG0780041239.01.T01:intron 45.0%
GAGACCAAATATCGTCACTG+AGG - Chr7:88630094-88630113 MsG0780041239.01.T01:three_prime_UTR 45.0%
GAGATTACTTACAAGCCAGG+AGG + Chr7:88632475-88632494 None:intergenic 45.0%
GCTCAAGGTCAAATTGCTTC+TGG - Chr7:88634504-88634523 MsG0780041239.01.T01:intron 45.0%
GCTGGATCTGAGAGATGATT+GGG + Chr7:88634579-88634598 None:intergenic 45.0%
GCTGTTGTATCGCGATTTCA+AGG - Chr7:88630403-88630422 MsG0780041239.01.T01:intron 45.0%
GGAAATACTCATGAGCCAAC+AGG - Chr7:88636102-88636121 MsG0780041239.01.T01:intron 45.0%
GTCGATAATGCAGCTACAAC+AGG - Chr7:88635580-88635599 MsG0780041239.01.T01:CDS 45.0%
GTCTATATTCTCCTGTCAGC+TGG - Chr7:88634390-88634409 MsG0780041239.01.T01:intron 45.0%
GTGAAATTGGGCCTTAGAAC+AGG + Chr7:88632667-88632686 None:intergenic 45.0%
GTTATAGAGACAAGCCTGAG+TGG - Chr7:88631204-88631223 MsG0780041239.01.T01:intron 45.0%
GTTGGGGAATTCACCACTAT+TGG - Chr7:88631266-88631285 MsG0780041239.01.T01:intron 45.0%
TCACTACTTGGTCACCTTTC+TGG - Chr7:88632268-88632287 MsG0780041239.01.T01:intron 45.0%
TCCTACAGTTAGATGAGCGT+GGG - Chr7:88634792-88634811 MsG0780041239.01.T01:intron 45.0%
TCTGAGCTGGAAAGGATCAT+GGG - Chr7:88631021-88631040 MsG0780041239.01.T01:intron 45.0%
TCTGCTGTGGTTATTGTCTG+CGG - Chr7:88630313-88630332 MsG0780041239.01.T01:intron 45.0%
TCTTCAAGCCAGACTCTTAG+AGG - Chr7:88634545-88634564 MsG0780041239.01.T01:intron 45.0%
TGCCAACTAGGGTGAATCAA+TGG - Chr7:88630266-88630285 MsG0780041239.01.T01:three_prime_UTR 45.0%
TGGTGATCTTAATGTGGCAG+TGG - Chr7:88636081-88636100 MsG0780041239.01.T01:intron 45.0%
TGTTTAATGTGCCTGCCAAG+TGG - Chr7:88631851-88631870 MsG0780041239.01.T01:intron 45.0%
TTTAACCCCTCATCACACCA+GGG - Chr7:88631993-88632012 MsG0780041239.01.T01:intron 45.0%
! AGACATTTTGCATGAGGAGC+TGG + Chr7:88632249-88632268 None:intergenic 45.0%
! AGATGAGCGTGGGTTACAAT+TGG - Chr7:88634802-88634821 MsG0780041239.01.T01:intron 45.0%
! CAATTGAGGTGCTAGAACAG+TGG + Chr7:88630807-88630826 None:intergenic 45.0%
! CAATTGGTTCCTGTTTGCCA+TGG - Chr7:88634818-88634837 MsG0780041239.01.T01:intron 45.0%
! CACCTTTCTGGCATTGTATC+TGG - Chr7:88632280-88632299 MsG0780041239.01.T01:intron 45.0%
! CCATGTTTTCATAGCACTGC+TGG - Chr7:88631098-88631117 MsG0780041239.01.T01:intron 45.0%
! GGCTGATGGTGATCTTAATG+TGG - Chr7:88636075-88636094 MsG0780041239.01.T01:intron 45.0%
! GGGGCAGTGGAATATTTTCT+GGG - Chr7:88633495-88633514 MsG0780041239.01.T01:intron 45.0%
! TCTGAGGTAGGCACAATTGA+CGG + Chr7:88630567-88630586 None:intergenic 45.0%
! TGGGGCAGTGGAATATTTTC+TGG - Chr7:88633494-88633513 MsG0780041239.01.T01:intron 45.0%
! TGTTTTCATAGCACTGCTGG+TGG - Chr7:88631101-88631120 MsG0780041239.01.T01:intron 45.0%
! TTTTAACCCCTCATCACACC+AGG - Chr7:88631992-88632011 MsG0780041239.01.T01:intron 45.0%
!! CACCATTGATTCACCCTAGT+TGG + Chr7:88630271-88630290 None:intergenic 45.0%
!! GAGTGTGCTATTGGGTTTTC+AGG - Chr7:88631162-88631181 MsG0780041239.01.T01:intron 45.0%
!! GGGACAGTTTTGTGCATGAT+TGG - Chr7:88634620-88634639 MsG0780041239.01.T01:intron 45.0%
!!! ATAATTTTGTTATATTTATA+GGG - Chr7:88632100-88632119 MsG0780041239.01.T01:intron 5.0%
!!! TATAATTTTGTTATATTTAT+AGG - Chr7:88632099-88632118 MsG0780041239.01.T01:intron 5.0%
AAAGAAAGGCAGACGGTCCA+GGG + Chr7:88630675-88630694 None:intergenic 50.0%
AACAGTGTCAGGGAAGTCTC+TGG + Chr7:88636270-88636289 None:intergenic 50.0%
AATCGCGATACAACAGCGGA+AGG + Chr7:88630400-88630419 None:intergenic 50.0%
ACAGTGTCAGGGAAGTCTCT+GGG + Chr7:88636269-88636288 None:intergenic 50.0%
ACCCACGCTCATCTAACTGT+AGG + Chr7:88634796-88634815 None:intergenic 50.0%
ACCTGCTCCCTGCATTCATA+GGG + Chr7:88635701-88635720 None:intergenic 50.0%
ACTGTCCTCAACTGACTGCA+AGG + Chr7:88634452-88634471 None:intergenic 50.0%
AGAGAACACCGCTAATGCCA+TGG - Chr7:88636531-88636550 MsG0780041239.01.T01:five_prime_UTR 50.0%
AGCAGCTGTTCCACATCATC+AGG - Chr7:88635603-88635622 MsG0780041239.01.T01:CDS 50.0%
AGGCCCAATTTCACTCTCAG+AGG - Chr7:88632673-88632692 MsG0780041239.01.T01:intron 50.0%
AGTTGAGGACAGTAGGTTCC+TGG - Chr7:88634459-88634478 MsG0780041239.01.T01:intron 50.0%
CGAAACCTTGCAGTCAGTTG+AGG - Chr7:88634444-88634463 MsG0780041239.01.T01:intron 50.0%
CTCTGAGCTGGAAAGGATCA+TGG - Chr7:88631020-88631039 MsG0780041239.01.T01:intron 50.0%
CTGAATGGCCATGGCATTAG+CGG + Chr7:88636542-88636561 None:intergenic 50.0%
GAATGACCAAATGCCCAGAG+CGG + Chr7:88634064-88634083 None:intergenic 50.0%
GGAAGGCAAGAAGCAGATCT+CGG + Chr7:88630383-88630402 None:intergenic 50.0%
GGCTGGATCTGAGAGATGAT+TGG + Chr7:88634580-88634599 None:intergenic 50.0%
GGTATGCTTTCAGACGCAAG+TGG - Chr7:88636036-88636055 MsG0780041239.01.T01:intron 50.0%
GTTGAGGACAGTAGGTTCCT+GGG - Chr7:88634460-88634479 MsG0780041239.01.T01:intron 50.0%
TCCTCGATTGAACTCCACTC+AGG + Chr7:88631221-88631240 None:intergenic 50.0%
TCTTCAATTGAGCCTCCTCC+TGG - Chr7:88632457-88632476 MsG0780041239.01.T01:intron 50.0%
TGAGTGGAGTTCAATCGAGG+AGG - Chr7:88631220-88631239 MsG0780041239.01.T01:intron 50.0%
TGCAGCTTACTGAATGGCCA+TGG + Chr7:88636551-88636570 None:intergenic 50.0%
TGCAGTCAGTTGAGGACAGT+AGG - Chr7:88634452-88634471 MsG0780041239.01.T01:intron 50.0%
TGGAGTTCAATCGAGGAGGT+TGG - Chr7:88631224-88631243 MsG0780041239.01.T01:intron 50.0%
TTAGGCAAGAAGGACCCAGA+AGG + Chr7:88635875-88635894 None:intergenic 50.0%
TTGACCTTGAGCAGCAGCAA+GGG + Chr7:88634496-88634515 None:intergenic 50.0%
TTTGACCTTGAGCAGCAGCA+AGG + Chr7:88634497-88634516 None:intergenic 50.0%
! CATGCATTTTCATGGGGCAG+TGG - Chr7:88633482-88633501 MsG0780041239.01.T01:intron 50.0%
! TAAGATCCGCTCTGGGCATT+TGG - Chr7:88634055-88634074 MsG0780041239.01.T01:three_prime_UTR 50.0%
! TAGCTTGCCAAAGGAATGGC+AGG + Chr7:88633928-88633947 None:intergenic 50.0%
! TCTTTTAATCTCGGCCTCCC+TGG + Chr7:88632013-88632032 None:intergenic 50.0%
! TTTACTCGGATGGTGGTGAC+TGG - Chr7:88635940-88635959 MsG0780041239.01.T01:intron 50.0%
!! GAGAAGTGTCTACTCACCTC+AGG - Chr7:88633555-88633574 MsG0780041239.01.T01:intron 50.0%
AAGAAAGGCAGACGGTCCAG+GGG + Chr7:88630674-88630693 None:intergenic 55.0%
ACAGGCAGGGTTGCCAACTA+GGG - Chr7:88630255-88630274 MsG0780041239.01.T01:three_prime_UTR 55.0%
AGGACAGTAGGTTCCTGGGA+GGG - Chr7:88634464-88634483 MsG0780041239.01.T01:intron 55.0%
CAAAGAAAGGCAGACGGTCC+AGG + Chr7:88630676-88630695 None:intergenic 55.0%
CACCTGCTCCCTGCATTCAT+AGG + Chr7:88635702-88635721 None:intergenic 55.0%
CCTGCTCCCTGCATTCATAG+GGG + Chr7:88635700-88635719 None:intergenic 55.0%
CGAGGTAGAGAATGGGTGAG+CGG + Chr7:88636481-88636500 None:intergenic 55.0%
CTGGACCGTCTGCCTTTCTT+TGG - Chr7:88630674-88630693 MsG0780041239.01.T01:intron 55.0%
CTTTCCAGCTCAGAGCCCAA+AGG + Chr7:88631015-88631034 None:intergenic 55.0%
GAGGTAGAGAATGGGTGAGC+GGG + Chr7:88636480-88636499 None:intergenic 55.0%
GCCTGAGTGGAGTTCAATCG+AGG - Chr7:88631217-88631236 MsG0780041239.01.T01:intron 55.0%
TTTGCACGGGCGGAAATCCT+CGG - Chr7:88633352-88633371 MsG0780041239.01.T01:intron 55.0%
!! AGTTCCTTTGGGCTCTGAGC+TGG - Chr7:88631008-88631027 MsG0780041239.01.T01:intron 55.0%
!! CTTTGGGCTCTGAGCTGGAA+AGG - Chr7:88631013-88631032 MsG0780041239.01.T01:intron 55.0%
AACCCCTCATCACACCAGGG+AGG - Chr7:88631996-88632015 MsG0780041239.01.T01:intron 60.0%
AGGACCCTTGCTGCTGCTCA+AGG - Chr7:88634489-88634508 MsG0780041239.01.T01:intron 60.0%
AGTAGGTTCCTGGGAGGGGA+AGG - Chr7:88634469-88634488 MsG0780041239.01.T01:intron 60.0%
CACAGGCAGGGTTGCCAACT+AGG - Chr7:88630254-88630273 MsG0780041239.01.T01:three_prime_UTR 60.0%
CCCCTATGAATGCAGGGAGC+AGG - Chr7:88635697-88635716 MsG0780041239.01.T01:intron 60.0%
GACGCAAGTGGAAGTAGCGC+TGG - Chr7:88636048-88636067 MsG0780041239.01.T01:intron 60.0%
GAGGACAGTAGGTTCCTGGG+AGG - Chr7:88634463-88634482 MsG0780041239.01.T01:intron 60.0%
GGACAGTAGGTTCCTGGGAG+GGG - Chr7:88634465-88634484 MsG0780041239.01.T01:intron 60.0%
TTGCACGGGCGGAAATCCTC+GGG - Chr7:88633353-88633372 MsG0780041239.01.T01:intron 60.0%
! GCAAGTGGAAGTAGCGCTGG+CGG - Chr7:88636051-88636070 MsG0780041239.01.T01:intron 60.0%
! TCGGATGGTGGTGACTGGTG+TGG - Chr7:88635945-88635964 MsG0780041239.01.T01:intron 60.0%
CGGCCTCCCTGGTGTGATGA+GGG + Chr7:88632002-88632021 None:intergenic 65.0%
GGCCTCCCTGGTGTGATGAG+GGG + Chr7:88632001-88632020 None:intergenic 65.0%
TCGGCCTCCCTGGTGTGATG+AGG + Chr7:88632003-88632022 None:intergenic 65.0%
!! AGTGGAAGTAGCGCTGGCGG+CGG - Chr7:88636054-88636073 MsG0780041239.01.T01:intron 65.0%
GCAAGGGTCCTTCCCCTCCC+AGG + Chr7:88634480-88634499 None:intergenic 70.0%
!! GTAGCGCTGGCGGCGGCTGA+TGG - Chr7:88636061-88636080 MsG0780041239.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 88629949 88636586 88629949 ID=MsG0780041239.01;Name=MsG0780041239.01
Chr7 mRNA 88629949 88636586 88629949 ID=MsG0780041239.01.T01;Parent=MsG0780041239.01;Name=MsG0780041239.01.T01;_AED=0.42;_eAED=0.45;_QI=125|0.7|0.63|1|0.3|0.27|11|836|174
Chr7 exon 88629949 88630298 88629949 ID=MsG0780041239.01.T01:exon:20563;Parent=MsG0780041239.01.T01
Chr7 exon 88630412 88630486 88630412 ID=MsG0780041239.01.T01:exon:20562;Parent=MsG0780041239.01.T01
Chr7 exon 88630767 88630823 88630767 ID=MsG0780041239.01.T01:exon:20561;Parent=MsG0780041239.01.T01
Chr7 exon 88630911 88631009 88630911 ID=MsG0780041239.01.T01:exon:20560;Parent=MsG0780041239.01.T01
Chr7 exon 88632943 88633033 88632943 ID=MsG0780041239.01.T01:exon:20559;Parent=MsG0780041239.01.T01
Chr7 exon 88633121 88633214 88633121 ID=MsG0780041239.01.T01:exon:20558;Parent=MsG0780041239.01.T01
Chr7 exon 88634053 88634123 88634053 ID=MsG0780041239.01.T01:exon:20557;Parent=MsG0780041239.01.T01
Chr7 exon 88634663 88634695 88634663 ID=MsG0780041239.01.T01:exon:20556;Parent=MsG0780041239.01.T01
Chr7 exon 88635294 88635640 88635294 ID=MsG0780041239.01.T01:exon:20555;Parent=MsG0780041239.01.T01
Chr7 exon 88636175 88636276 88636175 ID=MsG0780041239.01.T01:exon:20554;Parent=MsG0780041239.01.T01
Chr7 exon 88636420 88636586 88636420 ID=MsG0780041239.01.T01:exon:20553;Parent=MsG0780041239.01.T01
Chr7 five_prime_UTR 88636462 88636586 88636462 ID=MsG0780041239.01.T01:five_prime_utr;Parent=MsG0780041239.01.T01
Chr7 CDS 88636420 88636461 88636420 ID=MsG0780041239.01.T01:cds;Parent=MsG0780041239.01.T01
Chr7 CDS 88636175 88636276 88636175 ID=MsG0780041239.01.T01:cds;Parent=MsG0780041239.01.T01
Chr7 CDS 88635294 88635640 88635294 ID=MsG0780041239.01.T01:cds;Parent=MsG0780041239.01.T01
Chr7 CDS 88634663 88634695 88634663 ID=MsG0780041239.01.T01:cds;Parent=MsG0780041239.01.T01
Chr7 CDS 88634123 88634123 88634123 ID=MsG0780041239.01.T01:cds;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88634053 88634122 88634053 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88633121 88633214 88633121 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88632943 88633033 88632943 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88630911 88631009 88630911 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88630767 88630823 88630767 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88630412 88630486 88630412 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Chr7 three_prime_UTR 88629949 88630298 88629949 ID=MsG0780041239.01.T01:three_prime_utr;Parent=MsG0780041239.01.T01
Gene Sequence

>MsG0780041239.01.T01

ATGCGAAGACCAAGAACTATGAGACCAAATATCGTCACTGAGGCAGGGTTGCCAACTAGGGTGAATCAATGGTGGGAAAGCATTCCATTTTTCACTTCTGCTGTGGTTATTGTCTGCGGAGCTCTTTACTTCGTTTGTCTTTTGAATCTGCTTCAATTCAGTGATCGAGTGCTTGTGTTTTATGCAGTTTACAGGATTTATACTGCCATTCTTTTCCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCTTTAGTTCCTTTGGGCTCTGAGCTGGAAAGGATCATGGGATCAGTTCGCTTGCTATATGTCACTATTTTGTTGGCTACGAGCAATGCTATAATCCATGTTTTCATAGCACTGCTGGTGGCATACAATCCTATTCTTACGAATGGTTATCTCATGAATGAGTGTGCTATTGGGTTTTCAGGAGTTTTGTTTTCGATGATTGTTATAGAGACAAGCCTGAGTGGAGTTCAATCGAGGAGTGTGTTTGGGTTGTTTAATGTGCCTGCCAAGTGA

Protein sequence

>MsG0780041239.01.T01

MRRPRTMRPNIVTEAGLPTRVNQWWESIPFFTSAVVIVCGALYFVCLLNLLQFSDRVLVFYAVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSNAIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAK*