Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031087.01.T01 | PNY00219.1 | 77.064 | 218 | 6 | 1 | 1 | 174 | 16 | 233 | 2.34E-108 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031087.01.T01 | Q8H0T4 | 63.47 | 219 | 36 | 2 | 1 | 175 | 3439 | 3657 | 4.03E-84 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031087.01.T01 | A0A2K3NB06 | 77.064 | 218 | 6 | 1 | 1 | 174 | 16 | 233 | 1.12e-108 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047869.01 | MsG0680031087.01 | 0.832076 | 1.161719e-55 | 1.284682e-52 |
| MsG0080048462.01 | MsG0680031087.01 | 0.812980 | 3.226427e-51 | 2.080900e-48 |
| MsG0080048618.01 | MsG0680031087.01 | 0.841828 | 3.750786e-58 | 5.578585e-55 |
| MsG0080048874.01 | MsG0680031087.01 | 0.803433 | 3.495116e-49 | 1.756116e-46 |
| MsG0080048964.01 | MsG0680031087.01 | 0.800811 | 1.209745e-48 | 5.686225e-46 |
| MsG0180000195.01 | MsG0680031087.01 | 0.803769 | 2.975758e-49 | 1.508180e-46 |
| MsG0180000335.01 | MsG0680031087.01 | 0.812559 | 3.988043e-51 | 2.543816e-48 |
| MsG0180000470.01 | MsG0680031087.01 | 0.827432 | 1.569556e-54 | 1.515057e-51 |
| MsG0180000550.01 | MsG0680031087.01 | 0.805949 | 1.042783e-49 | 5.589825e-47 |
| MsG0180001063.01 | MsG0680031087.01 | 0.856699 | 2.697000e-62 | 6.491833e-59 |
| MsG0180002842.01 | MsG0680031087.01 | 0.831059 | 2.069164e-55 | 2.220298e-52 |
| MsG0180003669.01 | MsG0680031087.01 | 0.838009 | 3.708159e-57 | 4.902708e-54 |
| MsG0180003686.01 | MsG0680031087.01 | 0.802450 | 5.578180e-49 | 2.733293e-46 |
| MsG0180004264.01 | MsG0680031087.01 | 0.801442 | 8.988945e-49 | 4.293172e-46 |
| MsG0180004295.01 | MsG0680031087.01 | 0.810068 | 1.385407e-50 | 8.270458e-48 |
| MsG0180004389.01 | MsG0680031087.01 | 0.823483 | 1.351784e-53 | 1.165420e-50 |
| MsG0180004426.01 | MsG0680031087.01 | 0.833542 | 5.022832e-56 | 5.802714e-53 |
| MsG0180004943.01 | MsG0680031087.01 | 0.811456 | 6.938789e-51 | 4.297307e-48 |
| MsG0180005050.01 | MsG0680031087.01 | 0.843347 | 1.481690e-58 | 2.311822e-55 |
| MsG0180005250.01 | MsG0680031087.01 | 0.830319 | 3.140154e-55 | 3.296926e-52 |
| MsG0180005842.01 | MsG0680031087.01 | 0.825572 | 4.357662e-54 | 3.987040e-51 |
| MsG0180005860.01 | MsG0680031087.01 | 0.801556 | 8.514788e-49 | 4.078469e-46 |
| MsG0180005993.01 | MsG0680031087.01 | 0.800992 | 1.111167e-48 | 5.247494e-46 |
| MsG0180006261.01 | MsG0680031087.01 | 0.833319 | 5.708991e-56 | 6.551712e-53 |
| MsG0280006299.01 | MsG0680031087.01 | 0.850874 | 1.280696e-60 | 2.544673e-57 |
| MsG0280006375.01 | MsG0680031087.01 | 0.819616 | 1.057838e-52 | 8.180502e-50 |
| MsG0280006407.01 | MsG0680031087.01 | 0.804281 | 2.328840e-49 | 1.195914e-46 |
| MsG0280010698.01 | MsG0680031087.01 | 0.836171 | 1.094256e-56 | 1.368082e-53 |
| MsG0280010722.01 | MsG0680031087.01 | 0.817095 | 3.938817e-52 | 2.841570e-49 |
| MsG0280010980.01 | MsG0680031087.01 | 0.801850 | 7.412198e-49 | 3.576972e-46 |
| MsG0280011032.01 | MsG0680031087.01 | 0.811605 | 6.438829e-51 | 4.003103e-48 |
| MsG0280011086.01 | MsG0680031087.01 | 0.815820 | 7.600546e-52 | 5.295198e-49 |
| MsG0280011175.01 | MsG0680031087.01 | 0.842835 | 2.029116e-58 | 3.114738e-55 |
| MsG0280011446.01 | MsG0680031087.01 | 0.808399 | 3.156868e-50 | 1.803247e-47 |
| MsG0380011494.01 | MsG0680031087.01 | 0.828462 | 8.869822e-55 | 8.822770e-52 |
| MsG0380011609.01 | MsG0680031087.01 | 0.852609 | 4.124956e-61 | 8.666861e-58 |
| MsG0380012009.01 | MsG0680031087.01 | 0.800573 | 1.352706e-48 | 6.320198e-46 |
| MsG0380012330.01 | MsG0680031087.01 | 0.821673 | 3.562897e-53 | 2.917848e-50 |
| MsG0380012460.01 | MsG0680031087.01 | 0.818350 | 2.052168e-52 | 1.532512e-49 |
| MsG0380013834.01 | MsG0680031087.01 | 0.811085 | 8.351643e-51 | 5.121918e-48 |
| MsG0380014139.01 | MsG0680031087.01 | 0.822043 | 2.924737e-53 | 2.420455e-50 |
| MsG0380014173.01 | MsG0680031087.01 | 0.822705 | 2.052932e-53 | 1.731453e-50 |
| MsG0380014248.01 | MsG0680031087.01 | 0.807994 | 3.850591e-50 | 2.176060e-47 |
| MsG0380014537.01 | MsG0680031087.01 | 0.831976 | 1.229616e-55 | 1.355902e-52 |
| MsG0680031087.01 | MsG0680031262.01 | 0.809703 | 1.660059e-50 | 9.815619e-48 |
| MsG0680031087.01 | MsG0680031924.01 | 0.803773 | 2.970798e-49 | 1.505790e-46 |
| MsG0680031087.01 | MsG0680034931.01 | 0.803311 | 3.702829e-49 | 1.854645e-46 |
| MsG0680031087.01 | MsG0780037292.01 | 0.816488 | 5.389700e-52 | 3.824057e-49 |
| MsG0680031087.01 | MsG0780037919.01 | 0.812837 | 3.467102e-51 | 2.227595e-48 |
| MsG0680031087.01 | MsG0780038276.01 | 0.818172 | 2.251182e-52 | 1.672795e-49 |
| MsG0680031087.01 | MsG0780038401.01 | 0.803159 | 3.981790e-49 | 1.986658e-46 |
| MsG0680031087.01 | MsG0780039243.01 | 0.801147 | 1.032712e-48 | 4.895954e-46 |
| MsG0680031087.01 | MsG0780039252.01 | 0.839600 | 1.438485e-57 | 1.996321e-54 |
| MsG0680031087.01 | MsG0780039522.01 | 0.812283 | 4.583784e-51 | 2.902451e-48 |
| MsG0680031087.01 | MsG0780039808.01 | 0.802680 | 5.001460e-49 | 2.465077e-46 |
| MsG0680031087.01 | MsG0780040596.01 | 0.806923 | 6.499073e-50 | 3.571687e-47 |
| MsG0680031087.01 | MsG0780040604.01 | 0.846750 | 1.784874e-59 | 3.103444e-56 |
| MsG0680031087.01 | MsG0780040704.01 | 0.843489 | 1.358084e-58 | 2.128211e-55 |
| MsG0680031087.01 | MsG0780041402.01 | 0.805143 | 1.539117e-49 | 8.081342e-47 |
| MsG0680031087.01 | MsG0780041416.01 | 0.841335 | 5.057440e-58 | 7.406778e-55 |
| MsG0680031087.01 | MsG0780041456.01 | 0.846358 | 2.283156e-59 | 3.919626e-56 |
| MsG0680031087.01 | MsG0780041507.01 | 0.809511 | 1.824953e-50 | 1.073559e-47 |
| MsG0680031087.01 | MsG0880041836.01 | 0.837326 | 5.552961e-57 | 7.188091e-54 |
| MsG0680031087.01 | MsG0880042301.01 | 0.804462 | 2.135919e-49 | 1.101932e-46 |
| MsG0680031087.01 | MsG0880042543.01 | 0.814234 | 1.709578e-51 | 1.140776e-48 |
| MsG0680031087.01 | MsG0880042698.01 | 0.835495 | 1.623327e-56 | 1.988487e-53 |
| MsG0680031087.01 | MsG0880042966.01 | 0.803852 | 2.860555e-49 | 1.452908e-46 |
| MsG0680031087.01 | MsG0880043479.01 | 0.812274 | 4.605034e-51 | 2.915172e-48 |
| MsG0680031087.01 | MsG0880044573.01 | 0.807207 | 5.657952e-50 | 3.132543e-47 |
| MsG0680031087.01 | MsG0880044574.01 | 0.829148 | 6.054531e-55 | 6.143916e-52 |
| MsG0680031087.01 | MsG0880045111.01 | 0.812447 | 4.220433e-51 | 2.684249e-48 |
| MsG0680031087.01 | MsG0880045736.01 | 0.840685 | 7.491372e-58 | 1.075310e-54 |
| MsG0680031087.01 | MsG0880045895.01 | 0.812710 | 3.696838e-51 | 2.367406e-48 |
| MsG0680031087.01 | MsG0880045896.01 | 0.810902 | 9.150960e-51 | 5.585109e-48 |
| MsG0680031087.01 | MsG0880045937.01 | 0.856080 | 4.096001e-62 | 9.660543e-59 |
| MsG0680031087.01 | MsG0880046012.01 | 0.814991 | 1.162075e-51 | 7.914731e-49 |
| MsG0680031087.01 | MsG0880046020.01 | 0.805806 | 1.117481e-49 | 5.968347e-47 |
| MsG0680031087.01 | MsG0880046425.01 | 0.823414 | 1.402866e-53 | 1.206982e-50 |
| MsG0680031087.01 | MsG0880046479.01 | 0.823776 | 1.154198e-53 | 1.003474e-50 |
| MsG0480018465.01 | MsG0680031087.01 | 0.822196 | 2.696211e-53 | 2.241077e-50 |
| MsG0480018970.01 | MsG0680031087.01 | 0.806550 | 7.788632e-50 | 4.239720e-47 |
| MsG0480019970.01 | MsG0680031087.01 | 0.804976 | 1.667508e-49 | 8.718279e-47 |
| MsG0480020002.01 | MsG0680031087.01 | 0.818031 | 2.423548e-52 | 1.793786e-49 |
| MsG0480020874.01 | MsG0680031087.01 | 0.813911 | 2.013861e-51 | 1.332059e-48 |
| MsG0480020886.01 | MsG0680031087.01 | 0.800510 | 1.393449e-48 | 6.500070e-46 |
| MsG0480021215.01 | MsG0680031087.01 | 0.810740 | 9.919282e-51 | 6.027723e-48 |
| MsG0480021274.01 | MsG0680031087.01 | 0.806729 | 7.142268e-50 | 3.905573e-47 |
| MsG0480021465.01 | MsG0680031087.01 | 0.809486 | 1.847821e-50 | 1.086266e-47 |
| MsG0480021536.01 | MsG0680031087.01 | 0.822828 | 1.922301e-53 | 1.627015e-50 |
| MsG0480021558.01 | MsG0680031087.01 | 0.821592 | 3.719462e-53 | 3.038980e-50 |
| MsG0480021853.01 | MsG0680031087.01 | 0.808104 | 3.648111e-50 | 2.067657e-47 |
| MsG0480021925.01 | MsG0680031087.01 | 0.808246 | 3.403171e-50 | 1.936160e-47 |
| MsG0480022068.01 | MsG0680031087.01 | 0.806808 | 6.873483e-50 | 3.766341e-47 |
| MsG0480022551.01 | MsG0680031087.01 | 0.831425 | 1.681505e-55 | 1.823971e-52 |
| MsG0480022985.01 | MsG0680031087.01 | 0.825672 | 4.125092e-54 | 3.785234e-51 |
| MsG0480023707.01 | MsG0680031087.01 | 0.803837 | 2.880552e-49 | 1.462535e-46 |
| MsG0580024082.01 | MsG0680031087.01 | 0.801159 | 1.026909e-48 | 4.869906e-46 |
| MsG0580024552.01 | MsG0680031087.01 | 0.849202 | 3.761083e-60 | 7.076969e-57 |
| MsG0580025022.01 | MsG0680031087.01 | 0.810365 | 1.195502e-50 | 7.192322e-48 |
| MsG0580025201.01 | MsG0680031087.01 | 0.823640 | 1.242036e-53 | 1.075621e-50 |
| MsG0580025448.01 | MsG0680031087.01 | 0.812775 | 3.578325e-51 | 2.295307e-48 |
| MsG0580025638.01 | MsG0680031087.01 | 0.802012 | 6.863762e-49 | 3.325919e-46 |
| MsG0580025758.01 | MsG0680031087.01 | 0.807201 | 5.673536e-50 | 3.140709e-47 |
| MsG0380015164.01 | MsG0680031087.01 | 0.803000 | 4.295642e-49 | 2.134449e-46 |
| MsG0380015168.01 | MsG0680031087.01 | 0.806437 | 8.230325e-50 | 4.467073e-47 |
| MsG0380015555.01 | MsG0680031087.01 | 0.817560 | 3.095778e-52 | 2.262025e-49 |
| MsG0380015566.01 | MsG0680031087.01 | 0.856591 | 2.900975e-62 | 6.959721e-59 |
| MsG0380016285.01 | MsG0680031087.01 | 0.818167 | 2.257838e-52 | 1.677435e-49 |
| MsG0380016517.01 | MsG0680031087.01 | 0.808686 | 2.742111e-50 | 1.577955e-47 |
| MsG0380016581.01 | MsG0680031087.01 | 0.800833 | 1.197150e-48 | 5.630420e-46 |
| MsG0380016910.01 | MsG0680031087.01 | 0.802703 | 4.947875e-49 | 2.440163e-46 |
| MsG0380017060.01 | MsG0680031087.01 | 0.801314 | 9.545559e-49 | 4.544434e-46 |
| MsG0380017140.01 | MsG0680031087.01 | 0.832183 | 1.093004e-55 | 1.212435e-52 |
| MsG0380017349.01 | MsG0680031087.01 | 0.801651 | 8.143307e-49 | 3.909810e-46 |
| MsG0380017461.01 | MsG0680031087.01 | 0.800875 | 1.173977e-48 | 5.527446e-46 |
| MsG0380017543.01 | MsG0680031087.01 | 0.802949 | 4.401196e-49 | 2.184088e-46 |
| MsG0380017680.01 | MsG0680031087.01 | 0.813102 | 3.033708e-51 | 1.962963e-48 |
| MsG0480018163.01 | MsG0680031087.01 | 0.818280 | 2.129037e-52 | 1.586648e-49 |
| MsG0480018425.01 | MsG0680031087.01 | 0.805136 | 1.544329e-49 | 8.107288e-47 |
| MsG0580026726.01 | MsG0680031087.01 | 0.817661 | 2.937081e-52 | 2.152075e-49 |
| MsG0580027833.01 | MsG0680031087.01 | 0.801961 | 7.033569e-49 | 3.403628e-46 |
| MsG0580028479.01 | MsG0680031087.01 | 0.802138 | 6.468670e-49 | 3.144491e-46 |
| MsG0580028990.01 | MsG0680031087.01 | 0.801869 | 7.346047e-49 | 3.546826e-46 |
| MsG0580029826.01 | MsG0680031087.01 | 0.810190 | 1.303762e-50 | 7.807430e-48 |
| MsG0280006491.01 | MsG0680031087.01 | 0.811494 | 6.808160e-51 | 4.220682e-48 |
| MsG0280006770.01 | MsG0680031087.01 | 0.821837 | 3.264198e-53 | 2.685856e-50 |
| MsG0280007088.01 | MsG0680031087.01 | 0.808795 | 2.598153e-50 | 1.499428e-47 |
| MsG0280007547.01 | MsG0680031087.01 | 0.812580 | 3.947136e-51 | 2.519052e-48 |
| MsG0280007815.01 | MsG0680031087.01 | 0.803053 | 4.188819e-49 | 2.084196e-46 |
| MsG0280008112.01 | MsG0680031087.01 | 0.804704 | 1.901236e-49 | 9.870450e-47 |
| MsG0280008615.01 | MsG0680031087.01 | 0.800241 | 1.580764e-48 | 7.323609e-46 |
| MsG0280009748.01 | MsG0680031087.01 | 0.809446 | 1.884999e-50 | 1.106955e-47 |
| MsG0280010443.01 | MsG0680031087.01 | 0.828859 | 7.112345e-55 | 7.155663e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031087.01.T01 | MTR_3g099777 | 76.712 | 219 | 7 | 1 | 1 | 175 | 3464 | 3682 | 6.26e-104 | 328 |
| MsG0680031087.01.T01 | MTR_5g066710 | 73.973 | 219 | 13 | 1 | 1 | 175 | 3436 | 3654 | 5.26e-101 | 320 |
| MsG0680031087.01.T01 | MTR_4g094708 | 63.470 | 219 | 36 | 1 | 1 | 175 | 3539 | 3757 | 6.94e-86 | 277 |
| MsG0680031087.01.T01 | MTR_4g094705 | 63.014 | 219 | 37 | 1 | 1 | 175 | 3518 | 3736 | 8.42e-86 | 276 |
| MsG0680031087.01.T01 | MTR_2g033040 | 35.909 | 220 | 86 | 7 | 2 | 175 | 813 | 1023 | 2.62e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031087.01.T01 | AT1G70320 | 63.470 | 219 | 36 | 2 | 1 | 175 | 3439 | 3657 | 4.10e-85 | 275 |
| MsG0680031087.01.T01 | AT1G55860 | 63.470 | 219 | 36 | 2 | 1 | 175 | 3462 | 3680 | 7.85e-85 | 274 |
| MsG0680031087.01.T01 | AT3G17205 | 36.364 | 220 | 85 | 8 | 2 | 175 | 804 | 1014 | 6.77e-25 | 102 |
| MsG0680031087.01.T01 | AT3G17205 | 36.364 | 220 | 85 | 8 | 2 | 175 | 818 | 1028 | 6.91e-25 | 102 |
| MsG0680031087.01.T01 | AT3G17205 | 36.364 | 220 | 85 | 8 | 2 | 175 | 818 | 1028 | 6.91e-25 | 102 |
Find 37 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCAAATAAATGCTTTCT+TGG | 0.242468 | 6:+14075685 | MsG0680031087.01.T01:CDS |
| AGCGCACTTCAAGGAATTTC+AGG | 0.248103 | 6:+14076543 | MsG0680031087.01.T01:CDS |
| TCTTCCAAATGTTGTTTAGA+TGG | 0.271330 | 6:-14076793 | None:intergenic |
| CATGAAGCAAATGAGGGATT+TGG | 0.287413 | 6:+14076835 | MsG0680031087.01.T01:CDS |
| TAAGCATCAATATGTTGATT+TGG | 0.313697 | 6:+14075631 | MsG0680031087.01.T01:CDS |
| AACAAACTTACAATCAATAT+CGG | 0.331367 | 6:-14075789 | None:intergenic |
| TTTCAATCAATTAGATTTGC+CGG | 0.333489 | 6:+14076765 | MsG0680031087.01.T01:CDS |
| GAATGATATCAGTGATGTTC+TGG | 0.379619 | 6:+14075372 | MsG0680031087.01.T01:CDS |
| TTTGAAAGAATTATATATAT+GGG | 0.392849 | 6:+14076953 | MsG0680031087.01.T01:exon |
| CAAATAAATGCTTTCTTGGA+AGG | 0.404199 | 6:+14075689 | MsG0680031087.01.T01:CDS |
| ACTGATTATGAGTTGATTCC+CGG | 0.416823 | 6:+14075578 | MsG0680031087.01.T01:CDS |
| TCCAAGAAAGCATTTATTTG+AGG | 0.420992 | 6:-14075686 | None:intergenic |
| GTATCCATCTAAACAACATT+TGG | 0.432935 | 6:+14076789 | MsG0680031087.01.T01:CDS |
| AATGCTTTCTTGGAAGGGTT+CGG | 0.435126 | 6:+14075695 | MsG0680031087.01.T01:CDS |
| TATATTCAATGACAAAGAAC+TGG | 0.439692 | 6:+14075745 | MsG0680031087.01.T01:CDS |
| AATATAGATATCAACTCCTT+CGG | 0.481461 | 6:-14075728 | None:intergenic |
| AACTTTAGTATTCCGTCCAC+CGG | 0.490687 | 6:-14075597 | None:intergenic |
| AAATAAATGCTTTCTTGGAA+GGG | 0.491087 | 6:+14075690 | MsG0680031087.01.T01:CDS |
| AGCAAATGAGGGATTTGGAT+TGG | 0.497119 | 6:+14076840 | MsG0680031087.01.T01:CDS |
| TGCGATTCATGAAGCAAATG+AGG | 0.510842 | 6:+14076828 | MsG0680031087.01.T01:CDS |
| ATGTTTCAGGTGCCTCTAGA+GGG | 0.525479 | 6:+14076516 | MsG0680031087.01.T01:intron |
| AATGTTTCAGGTGCCTCTAG+AGG | 0.525907 | 6:+14076515 | MsG0680031087.01.T01:intron |
| ACAAACTTACAATCAATATC+GGG | 0.528402 | 6:-14075788 | None:intergenic |
| CTAAACAACATTTGGAAGAG+AGG | 0.548837 | 6:+14076797 | MsG0680031087.01.T01:CDS |
| ACTTGCCTTCTGCTCATACA+TGG | 0.550247 | 6:+14076610 | MsG0680031087.01.T01:CDS |
| ATGAGTTGATTCCCGGTGGA+CGG | 0.550628 | 6:+14075585 | MsG0680031087.01.T01:CDS |
| TGGTACCATGTATGAGCAGA+AGG | 0.570039 | 6:-14076615 | None:intergenic |
| TGTTGTTTAGATGGATACTC+CGG | 0.574334 | 6:-14076784 | None:intergenic |
| ACTTTAGTATTCCGTCCACC+GGG | 0.596825 | 6:-14075596 | None:intergenic |
| GCGATTCATGAAGCAAATGA+GGG | 0.601962 | 6:+14076829 | MsG0680031087.01.T01:CDS |
| TTTCAAATACACAAGGCATG+TGG | 0.621431 | 6:+14076576 | MsG0680031087.01.T01:CDS |
| GAACTGGAACTATTGATCAG+TGG | 0.637735 | 6:+14075761 | MsG0680031087.01.T01:CDS |
| GTTCGGTGAAATAATTCCGA+AGG | 0.644631 | 6:+14075712 | MsG0680031087.01.T01:CDS |
| GATTATGAGTTGATTCCCGG+TGG | 0.660118 | 6:+14075581 | MsG0680031087.01.T01:CDS |
| AGTGCGCTAAAACCCTCTAG+AGG | 0.690121 | 6:-14076528 | None:intergenic |
| TCAAAAGTTTCAAATACACA+AGG | 0.697802 | 6:+14076569 | MsG0680031087.01.T01:CDS |
| ACGGAATACTAAAGTTACAG+AGG | 0.721312 | 6:+14075604 | MsG0680031087.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAAAGAATTATATATAT+GGG | + | Chr6:14076953-14076972 | MsG0680031087.01.T01:exon | 10.0% |
| !!! | TATGTATTTTATTTATTGTT+TGG | + | Chr6:14076889-14076908 | MsG0680031087.01.T01:CDS | 10.0% |
| !!! | TTTTGAAAGAATTATATATA+TGG | + | Chr6:14076952-14076971 | MsG0680031087.01.T01:exon | 10.0% |
| !! | TTTAAAAGATTGAATAATGT+TGG | + | Chr6:14076412-14076431 | MsG0680031087.01.T01:intron | 15.0% |
| !!! | ATAGAAAATCACTAAATTTT+GGG | - | Chr6:14076171-14076190 | None:intergenic | 15.0% |
| !!! | ATATTGGAAATACTTTTATT+TGG | + | Chr6:14076209-14076228 | MsG0680031087.01.T01:intron | 15.0% |
| !!! | TAAACATTTTGATCTTTTAT+TGG | + | Chr6:14076139-14076158 | MsG0680031087.01.T01:intron | 15.0% |
| !!! | TTTTATTTATTGTTTGGATT+TGG | + | Chr6:14076895-14076914 | MsG0680031087.01.T01:CDS | 15.0% |
| !! | AAAGAAACTCAATAAAGATT+AGG | - | Chr6:14075826-14075845 | None:intergenic | 20.0% |
| !! | AACAAACTTACAATCAATAT+CGG | - | Chr6:14075792-14075811 | None:intergenic | 20.0% |
| !! | TAATCTGAATGAATATGTTT+AGG | + | Chr6:14075553-14075572 | MsG0680031087.01.T01:intron | 20.0% |
| !!! | AAATACTTTTATTTGGAGTT+CGG | + | Chr6:14076216-14076235 | MsG0680031087.01.T01:intron | 20.0% |
| !!! | AGAAAAGAAATTTTAACACT+CGG | + | Chr6:14075939-14075958 | MsG0680031087.01.T01:intron | 20.0% |
| !!! | AGTGTTAAAATTTCTTTTCT+AGG | - | Chr6:14075939-14075958 | None:intergenic | 20.0% |
| !!! | ATTCTATCGACATAATTTTT+GGG | + | Chr6:14076663-14076682 | MsG0680031087.01.T01:intron | 20.0% |
| !!! | CATAGAAAATCACTAAATTT+TGG | - | Chr6:14076172-14076191 | None:intergenic | 20.0% |
| !!! | TAAAAGTATTTCCAATATGA+AGG | - | Chr6:14076207-14076226 | None:intergenic | 20.0% |
| !!! | TATTCTATCGACATAATTTT+TGG | + | Chr6:14076662-14076681 | MsG0680031087.01.T01:intron | 20.0% |
| ! | AAATAAATGCTTTCTTGGAA+GGG | + | Chr6:14075690-14075709 | MsG0680031087.01.T01:CDS | 25.0% |
| ! | AACATGTAATGTACGATTAA+TGG | + | Chr6:14076475-14076494 | MsG0680031087.01.T01:intron | 25.0% |
| ! | AATATAGATATCAACTCCTT+CGG | - | Chr6:14075731-14075750 | None:intergenic | 25.0% |
| ! | ACAAACTTACAATCAATATC+GGG | - | Chr6:14075791-14075810 | None:intergenic | 25.0% |
| ! | ACATGTAATGTACGATTAAT+GGG | + | Chr6:14076476-14076495 | MsG0680031087.01.T01:intron | 25.0% |
| ! | TATATTCAATGACAAAGAAC+TGG | + | Chr6:14075745-14075764 | MsG0680031087.01.T01:CDS | 25.0% |
| ! | TCAAAAGTTTCAAATACACA+AGG | + | Chr6:14076569-14076588 | MsG0680031087.01.T01:CDS | 25.0% |
| ! | TGAGAAATTATCCTTCATAT+TGG | + | Chr6:14076193-14076212 | MsG0680031087.01.T01:intron | 25.0% |
| ! | TTTCAATCAATTAGATTTGC+CGG | + | Chr6:14076765-14076784 | MsG0680031087.01.T01:CDS | 25.0% |
| !! | TAAGCATCAATATGTTGATT+TGG | + | Chr6:14075631-14075650 | MsG0680031087.01.T01:CDS | 25.0% |
| !!! | ATAATTTTTGGGTCAAGTTT+TGG | + | Chr6:14076674-14076693 | MsG0680031087.01.T01:intron | 25.0% |
| !!! | GGTTATACATTTTATTTCAG+TGG | + | Chr6:14075960-14075979 | MsG0680031087.01.T01:intron | 25.0% |
| ACCTCAAATAAATGCTTTCT+TGG | + | Chr6:14075685-14075704 | MsG0680031087.01.T01:CDS | 30.0% | |
| AGAGCAAATACAGAATATTC+TGG | + | Chr6:14075991-14076010 | MsG0680031087.01.T01:intron | 30.0% | |
| AGATTAGACAGTTAACAATG+AGG | - | Chr6:14075539-14075558 | None:intergenic | 30.0% | |
| CAAATAAATGCTTTCTTGGA+AGG | + | Chr6:14075689-14075708 | MsG0680031087.01.T01:CDS | 30.0% | |
| GAAGAAAGTAAACAGAAAAC+TGG | - | Chr6:14076288-14076307 | None:intergenic | 30.0% | |
| GAATAGAATGACATCAACAA+AGG | - | Chr6:14075872-14075891 | None:intergenic | 30.0% | |
| GTATCCATCTAAACAACATT+TGG | + | Chr6:14076789-14076808 | MsG0680031087.01.T01:CDS | 30.0% | |
| TCTGTTTACTTTCTTCCAAA+TGG | + | Chr6:14076292-14076311 | MsG0680031087.01.T01:intron | 30.0% | |
| TTGAGATGATATTGATGCAT+TGG | + | Chr6:14075510-14075529 | MsG0680031087.01.T01:intron | 30.0% | |
| ! | ATTTTTGCTTCCAATGTTTC+AGG | + | Chr6:14076503-14076522 | MsG0680031087.01.T01:intron | 30.0% |
| ! | TCTTCCAAATGTTGTTTAGA+TGG | - | Chr6:14076796-14076815 | None:intergenic | 30.0% |
| !! | TCCAAGAAAGCATTTATTTG+AGG | - | Chr6:14075689-14075708 | None:intergenic | 30.0% |
| ACCAACTGAAAGTAGAGAAA+TGG | - | Chr6:14076638-14076657 | None:intergenic | 35.0% | |
| ACCATTTCTCTACTTTCAGT+TGG | + | Chr6:14076634-14076653 | MsG0680031087.01.T01:intron | 35.0% | |
| ACGGAATACTAAAGTTACAG+AGG | + | Chr6:14075604-14075623 | MsG0680031087.01.T01:CDS | 35.0% | |
| CTAAACAACATTTGGAAGAG+AGG | + | Chr6:14076797-14076816 | MsG0680031087.01.T01:CDS | 35.0% | |
| GAATGATATCAGTGATGTTC+TGG | + | Chr6:14075372-14075391 | MsG0680031087.01.T01:CDS | 35.0% | |
| GGTTCATTGTATTGAAGACT+TGG | + | Chr6:14076433-14076452 | MsG0680031087.01.T01:intron | 35.0% | |
| TGCATTCTATTCCAATACTC+TGG | + | Chr6:14076376-14076395 | MsG0680031087.01.T01:intron | 35.0% | |
| TTTCAAATACACAAGGCATG+TGG | + | Chr6:14076576-14076595 | MsG0680031087.01.T01:CDS | 35.0% | |
| ! | TGTTGTTTAGATGGATACTC+CGG | - | Chr6:14076787-14076806 | None:intergenic | 35.0% |
| !! | ACTGATTATGAGTTGATTCC+CGG | + | Chr6:14075578-14075597 | MsG0680031087.01.T01:CDS | 35.0% |
| !! | GCTCTGAAAGAAATATACCT+TGG | - | Chr6:14076117-14076136 | None:intergenic | 35.0% |
| !!! | TTTTAGCATTGATGCAGATG+AGG | + | Chr6:14075402-14075421 | MsG0680031087.01.T01:CDS | 35.0% |
| AACTTTAGTATTCCGTCCAC+CGG | - | Chr6:14075600-14075619 | None:intergenic | 40.0% | |
| AATGCTTTCTTGGAAGGGTT+CGG | + | Chr6:14075695-14075714 | MsG0680031087.01.T01:CDS | 40.0% | |
| AGCAAATGAGGGATTTGGAT+TGG | + | Chr6:14076840-14076859 | MsG0680031087.01.T01:CDS | 40.0% | |
| CATGAAGCAAATGAGGGATT+TGG | + | Chr6:14076835-14076854 | MsG0680031087.01.T01:CDS | 40.0% | |
| CTAGCTCATTTGATTGATGC+TGG | + | Chr6:14075891-14075910 | MsG0680031087.01.T01:intron | 40.0% | |
| GAACTGGAACTATTGATCAG+TGG | + | Chr6:14075761-14075780 | MsG0680031087.01.T01:CDS | 40.0% | |
| GCGATTCATGAAGCAAATGA+GGG | + | Chr6:14076829-14076848 | MsG0680031087.01.T01:CDS | 40.0% | |
| TCCCAAAACCATTGAATCAC+CGG | - | Chr6:14076032-14076051 | None:intergenic | 40.0% | |
| TGCGATTCATGAAGCAAATG+AGG | + | Chr6:14076828-14076847 | MsG0680031087.01.T01:CDS | 40.0% | |
| TGTTCAAGGTTTCAGCAAAG+AGG | + | Chr6:14076055-14076074 | MsG0680031087.01.T01:intron | 40.0% | |
| TTGTATTGAAGACTTGGAGC+TGG | + | Chr6:14076439-14076458 | MsG0680031087.01.T01:intron | 40.0% | |
| ! | GTTCGGTGAAATAATTCCGA+AGG | + | Chr6:14075712-14075731 | MsG0680031087.01.T01:CDS | 40.0% |
| ! | TTCCAAATGGTCGAGAGTTT+TGG | + | Chr6:14076305-14076324 | MsG0680031087.01.T01:intron | 40.0% |
| !! | GTTTTGGTGTATGTGTCACA+TGG | + | Chr6:14076321-14076340 | MsG0680031087.01.T01:intron | 40.0% |
| ACGAGAGAAAGCCAGAGTAT+TGG | - | Chr6:14076390-14076409 | None:intergenic | 45.0% | |
| ACTTGCCTTCTGCTCATACA+TGG | + | Chr6:14076610-14076629 | MsG0680031087.01.T01:CDS | 45.0% | |
| ACTTTAGTATTCCGTCCACC+GGG | - | Chr6:14075599-14075618 | None:intergenic | 45.0% | |
| AGCGCACTTCAAGGAATTTC+AGG | + | Chr6:14076543-14076562 | MsG0680031087.01.T01:CDS | 45.0% | |
| AGGTTTCAGCAAAGAGGACA+AGG | + | Chr6:14076061-14076080 | MsG0680031087.01.T01:intron | 45.0% | |
| CACCAAAACTCTCGACCATT+TGG | - | Chr6:14076310-14076329 | None:intergenic | 45.0% | |
| CCCAAAACCATTGAATCACC+GGG | - | Chr6:14076031-14076050 | None:intergenic | 45.0% | |
| TGGTACCATGTATGAGCAGA+AGG | - | Chr6:14076618-14076637 | None:intergenic | 45.0% | |
| ! | AATGTTTCAGGTGCCTCTAG+AGG | + | Chr6:14076515-14076534 | MsG0680031087.01.T01:intron | 45.0% |
| ! | ATGTTTCAGGTGCCTCTAGA+GGG | + | Chr6:14076516-14076535 | MsG0680031087.01.T01:intron | 45.0% |
| ! | CCCGGTGATTCAATGGTTTT+GGG | + | Chr6:14076028-14076047 | MsG0680031087.01.T01:intron | 45.0% |
| ! | TCCCGGTGATTCAATGGTTT+TGG | + | Chr6:14076027-14076046 | MsG0680031087.01.T01:intron | 45.0% |
| !! | GATTATGAGTTGATTCCCGG+TGG | + | Chr6:14075581-14075600 | MsG0680031087.01.T01:CDS | 45.0% |
| !! | TCTAGAGGCACCTGAAACAT+TGG | - | Chr6:14076516-14076535 | None:intergenic | 45.0% |
| !!! | GGTGATTCAATGGTTTTGGG+AGG | + | Chr6:14076031-14076050 | MsG0680031087.01.T01:intron | 45.0% |
| !!! | TGGTTTTGGGAGGTTGTTCA+AGG | + | Chr6:14076041-14076060 | MsG0680031087.01.T01:intron | 45.0% |
| AGGCTGTTGCAGTTTGTGAC+AGG | + | Chr6:14076086-14076105 | MsG0680031087.01.T01:intron | 50.0% | |
| AGTGCGCTAAAACCCTCTAG+AGG | - | Chr6:14076531-14076550 | None:intergenic | 50.0% | |
| GTTTGTGACAGGCACTTCCA+AGG | + | Chr6:14076097-14076116 | MsG0680031087.01.T01:intron | 50.0% | |
| TCAGCAAAGAGGACAAGGCT+AGG | + | Chr6:14076066-14076085 | MsG0680031087.01.T01:intron | 50.0% | |
| TGAAGACTTGGAGCTGGACT+TGG | + | Chr6:14076445-14076464 | MsG0680031087.01.T01:intron | 50.0% | |
| !! | ATGAGTTGATTCCCGGTGGA+CGG | + | Chr6:14075585-14075604 | MsG0680031087.01.T01:CDS | 50.0% |
| !! | CTGGATATAGTGCTGCTTCC+CGG | + | Chr6:14076010-14076029 | MsG0680031087.01.T01:intron | 50.0% |
| !! | GAGGGTTTTAGCGCACTTCA+AGG | + | Chr6:14076534-14076553 | MsG0680031087.01.T01:CDS | 50.0% |
| GCTGCTTCCCGGTGATTCAA+TGG | + | Chr6:14076021-14076040 | MsG0680031087.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 14075367 | 14076988 | 14075367 | ID=MsG0680031087.01;Name=MsG0680031087.01 |
| Chr6 | mRNA | 14075367 | 14076988 | 14075367 | ID=MsG0680031087.01.T01;Parent=MsG0680031087.01;Name=MsG0680031087.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0.66|0.5|1|0.66|0.75|4|31|206 |
| Chr6 | exon | 14075367 | 14075453 | 14075367 | ID=MsG0680031087.01.T01:exon:9726;Parent=MsG0680031087.01.T01 |
| Chr6 | exon | 14075575 | 14075808 | 14075575 | ID=MsG0680031087.01.T01:exon:9727;Parent=MsG0680031087.01.T01 |
| Chr6 | exon | 14076525 | 14076631 | 14076525 | ID=MsG0680031087.01.T01:exon:9728;Parent=MsG0680031087.01.T01 |
| Chr6 | exon | 14076765 | 14076988 | 14076765 | ID=MsG0680031087.01.T01:exon:9729;Parent=MsG0680031087.01.T01 |
| Chr6 | CDS | 14075367 | 14075453 | 14075367 | ID=MsG0680031087.01.T01:cds;Parent=MsG0680031087.01.T01 |
| Chr6 | CDS | 14075575 | 14075808 | 14075575 | ID=MsG0680031087.01.T01:cds;Parent=MsG0680031087.01.T01 |
| Chr6 | CDS | 14076525 | 14076631 | 14076525 | ID=MsG0680031087.01.T01:cds;Parent=MsG0680031087.01.T01 |
| Chr6 | CDS | 14076765 | 14076957 | 14076765 | ID=MsG0680031087.01.T01:cds;Parent=MsG0680031087.01.T01 |
| Chr6 | three_prime_UTR | 14076958 | 14076988 | 14076958 | ID=MsG0680031087.01.T01:three_prime_utr;Parent=MsG0680031087.01.T01 |
| Gene Sequence |
| Protein sequence |
