AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007870 MtrunA17_Chr1g0148021 97.256 328 9 0 1 328 1 328 0.0 659
Msa0007870 MtrunA17_Chr4g0053871 65.017 303 100 2 26 327 26 323 2.80e-145 412
Msa0007870 MtrunA17_Chr4g0072091 65.677 303 102 1 26 328 23 323 6.35e-145 411
Msa0007870 MtrunA17_Chr5g0401431 60.125 321 125 2 10 327 8 328 5.04e-143 407
Msa0007870 MtrunA17_Chr7g0225221 58.416 303 120 2 26 328 24 320 3.24e-124 358
Msa0007870 MtrunA17_Chr6g0451571 43.252 326 171 6 6 328 20 334 2.58e-88 268
Msa0007870 MtrunA17_Chr4g0046131 42.598 331 178 5 6 326 16 344 2.19e-87 266
Msa0007870 MtrunA17_Chr1g0197411 42.320 319 179 3 13 328 14 330 2.90e-87 265
Msa0007870 MtrunA17_Chr1g0157051 43.925 321 167 8 10 327 7 317 3.98e-84 256
Msa0007870 MtrunA17_Chr2g0292211 46.319 326 165 7 7 328 22 341 1.65e-82 254
Msa0007870 MtrunA17_Chr8g0364291 41.104 326 185 5 6 328 3 324 5.03e-82 251
Msa0007870 MtrunA17_Chr2g0292241 46.254 307 157 5 26 328 28 330 3.10e-81 250
Msa0007870 MtrunA17_Chr1g0175561 42.812 320 175 5 13 328 11 326 8.85e-80 246
Msa0007870 MtrunA17_Chr7g0258811 41.956 317 179 3 15 328 57 371 1.37e-79 247
Msa0007870 MtrunA17_Chr2g0292251 45.277 307 160 5 26 328 27 329 1.40e-79 246
Msa0007870 MtrunA17_Chr8g0371381 44.224 303 159 6 27 328 26 319 2.78e-79 244
Msa0007870 MtrunA17_Chr5g0402581 41.121 321 183 4 10 328 10 326 1.25e-78 243
Msa0007870 MtrunA17_Chr5g0405991 42.154 325 174 9 6 328 4 316 2.12e-78 242
Msa0007870 MtrunA17_Chr2g0291751 43.492 315 170 6 18 328 20 330 4.30e-78 242
Msa0007870 MtrunA17_Chr3g0128061 39.506 324 191 4 7 328 6 326 6.31e-78 241
Msa0007870 MtrunA17_Chr7g0268501 45.724 304 155 7 27 328 25 320 3.95e-77 239
Msa0007870 MtrunA17_Chr7g0268521 45.724 304 155 7 27 328 25 320 3.95e-77 239
Msa0007870 MtrunA17_Chr1g0204011 41.956 317 176 5 13 328 13 322 7.28e-77 238
Msa0007870 MtrunA17_Chr2g0292181 42.810 306 169 4 26 328 37 339 8.49e-77 239
Msa0007870 MtrunA17_Chr2g0320031 41.159 328 178 7 5 328 3 319 1.09e-76 238
Msa0007870 MtrunA17_Chr2g0320071 39.877 326 183 6 5 328 3 317 1.91e-76 237
Msa0007870 MtrunA17_Chr2g0292271 43.464 306 167 4 26 328 28 330 1.96e-76 238
Msa0007870 MtrunA17_Chr4g0013171 41.088 331 182 7 1 328 1 321 2.27e-76 237
Msa0007870 MtrunA17_Chr5g0402571 39.937 318 185 4 13 328 13 326 3.01e-76 237
Msa0007870 MtrunA17_Chr2g0320091 40.361 332 180 8 1 328 1 318 1.32e-75 235
Msa0007870 MtrunA17_Chr2g0320061 40.373 322 180 5 9 328 7 318 2.47e-75 234
Msa0007870 MtrunA17_Chr4g0070951 41.358 324 177 5 10 328 14 329 3.22e-75 234
Msa0007870 MtrunA17_Chr2g0292151 42.671 307 168 6 26 328 28 330 5.94e-75 234
Msa0007870 MtrunA17_Chr2g0320101 39.877 326 183 6 5 328 3 317 7.08e-75 233
Msa0007870 MtrunA17_Chr4g0063671 40.367 327 179 7 7 328 5 320 1.12e-74 233
Msa0007870 MtrunA17_Chr2g0320051 41.486 323 175 7 9 328 7 318 1.32e-74 232
Msa0007870 MtrunA17_Chr2g0322861 39.937 318 185 4 13 328 73 386 5.22e-74 233
Msa0007870 MtrunA17_Chr2g0279041 40.785 331 184 6 2 328 3 325 7.83e-74 230
Msa0007870 MtrunA17_Chr2g0299691 39.514 329 184 5 6 328 39 358 1.95e-73 231
Msa0007870 MtrunA17_Chr2g0292261 41.311 305 175 2 26 328 28 330 4.07e-73 229
Msa0007870 MtrunA17_Chr2g0292111 42.384 302 166 6 31 328 33 330 1.38e-72 228
Msa0007870 MtrunA17_Chr4g0013181 42.525 301 162 5 30 328 62 353 1.59e-71 225
Msa0007870 MtrunA17_Chr4g0013821 36.842 323 197 5 7 328 8 324 3.14e-71 224
Msa0007870 MtrunA17_Chr3g0129051 41.250 320 171 8 9 324 12 318 5.04e-71 223
Msa0007870 MtrunA17_Chr5g0438021 39.939 328 181 7 5 328 10 325 8.67e-71 223
Msa0007870 MtrunA17_Chr4g0013721 38.835 309 182 5 21 328 94 396 1.13e-70 225
Msa0007870 MtrunA17_Chr5g0404721 42.333 300 168 4 31 328 34 330 1.45e-70 222
Msa0007870 MtrunA17_Chr3g0114451 40.303 330 183 6 1 328 1 318 1.71e-70 222
Msa0007870 MtrunA17_Chr1g0194151 38.806 335 193 7 1 328 4 333 1.74e-70 222
Msa0007870 MtrunA17_Chr4g0068621 41.748 309 169 8 24 328 35 336 2.19e-70 222
Msa0007870 MtrunA17_Chr2g0292291 41.176 306 175 3 26 328 29 332 2.70e-70 222
Msa0007870 MtrunA17_Chr4g0024121 40.000 330 190 5 1 328 3 326 6.37e-70 220
Msa0007870 MtrunA17_Chr1g0188431 37.538 325 183 7 10 328 17 327 1.12e-69 220
Msa0007870 MtrunA17_Chr2g0292091 39.458 332 190 7 1 328 1 325 1.16e-69 220
Msa0007870 MtrunA17_Chr7g0254201 38.284 303 176 7 27 328 20 312 1.21e-68 217
Msa0007870 MtrunA17_Chr6g0467161 40.264 303 169 6 27 328 45 336 1.43e-68 217
Msa0007870 MtrunA17_Chr7g0244461 39.542 306 174 4 24 328 17 312 1.97e-68 216
Msa0007870 MtrunA17_Chr3g0107881 40.798 326 177 7 9 328 9 324 2.51e-68 216
Msa0007870 MtrunA17_Chr3g0136751 38.769 325 187 5 6 328 8 322 2.62e-68 216
Msa0007870 MtrunA17_Chr1g0164891 39.610 308 174 7 28 328 90 392 5.11e-68 218
Msa0007870 MtrunA17_Chr4g0076211 40.864 301 167 6 29 328 43 333 7.10e-68 216
Msa0007870 MtrunA17_Chr4g0038171 41.284 327 173 9 8 328 8 321 2.05e-67 214
Msa0007870 MtrunA17_Chr4g0038151 39.571 326 180 8 8 328 8 321 2.93e-67 213
Msa0007870 MtrunA17_Chr4g0038161 39.308 318 179 5 15 328 13 320 5.15e-67 213
Msa0007870 MtrunA17_Chr4g0043391 40.059 337 180 10 1 328 1 324 7.17e-67 213
Msa0007870 MtrunA17_Chr3g0129061 39.498 319 178 6 10 324 11 318 1.16e-66 212
Msa0007870 MtrunA17_Chr7g0254231 39.803 304 167 8 27 328 22 311 1.60e-66 211
Msa0007870 MtrunA17_Chr1g0194271 37.719 342 194 7 1 328 4 340 1.66e-66 212
Msa0007870 MtrunA17_Chr6g0467121 40.066 302 169 5 27 328 74 363 5.21e-66 212
Msa0007870 MtrunA17_Chr8g0372601 39.088 307 182 4 24 328 27 330 8.12e-66 210
Msa0007870 MtrunA17_Chr6g0467251 37.963 324 186 7 6 324 11 324 1.33e-65 210
Msa0007870 MtrunA17_Chr3g0129041 39.628 323 180 6 10 328 11 322 2.20e-65 209
Msa0007870 MtrunA17_Chr2g0296621 37.582 306 173 8 27 328 50 341 2.02e-64 207
Msa0007870 MtrunA17_Chr2g0292101 39.458 332 191 7 1 328 1 326 2.11e-64 207
Msa0007870 MtrunA17_Chr6g0460711 38.080 323 190 6 7 328 1 314 2.64e-64 206
Msa0007870 MtrunA17_Chr4g0013201 37.299 311 186 2 18 328 37 338 5.67e-64 206
Msa0007870 MtrunA17_Chr5g0432351 39.879 331 174 11 9 328 5 321 1.31e-63 204
Msa0007870 MtrunA17_Chr7g0244451 38.170 317 184 5 13 328 11 316 8.55e-63 202
Msa0007870 MtrunA17_Chr3g0106921 37.037 324 186 8 11 328 9 320 1.07e-62 202
Msa0007870 MtrunA17_Chr6g0477071 36.533 323 183 8 13 328 35 342 1.43e-62 202
Msa0007870 MtrunA17_Chr2g0278671 37.742 310 179 6 25 328 22 323 6.28e-62 200
Msa0007870 MtrunA17_Chr5g0432441 37.160 331 190 6 3 328 9 326 6.91e-62 200
Msa0007870 MtrunA17_Chr4g0075241 37.582 306 182 6 26 328 28 327 7.74e-62 200
Msa0007870 MtrunA17_Chr5g0432341 39.144 327 174 11 13 328 9 321 3.78e-61 198
Msa0007870 MtrunA17_Chr5g0432331 38.872 337 181 11 1 328 32 352 1.27e-60 197
Msa0007870 MtrunA17_Chr5g0400331 39.088 307 175 7 30 328 29 331 2.09e-60 196
Msa0007870 MtrunA17_Chr1g0155611 36.721 305 187 4 27 328 46 347 9.48e-60 195
Msa0007870 MtrunA17_Chr4g0013191 37.987 308 179 5 24 328 42 340 4.29e-59 193
Msa0007870 MtrunA17_Chr2g0329641 34.402 343 202 7 1 328 1 335 1.72e-58 191
Msa0007870 MtrunA17_Chr7g0224371 37.248 298 177 4 31 328 35 322 4.13e-58 190
Msa0007870 MtrunA17_Chr2g0279061 41.221 262 143 5 71 328 12 266 1.18e-56 184
Msa0007870 MtrunA17_Chr1g0213061 37.309 327 185 9 11 328 6 321 2.55e-56 186
Msa0007870 MtrunA17_Chr2g0316481 34.024 338 186 5 23 327 72 405 4.29e-55 184
Msa0007870 MtrunA17_Chr2g0316831 34.320 338 185 7 23 327 108 441 8.37e-55 185
Msa0007870 MtrunA17_Chr2g0316791 33.728 338 187 5 23 327 72 405 1.60e-54 183
Msa0007870 MtrunA17_Chr1g0181481 35.505 307 187 5 25 328 25 323 4.54e-54 179
Msa0007870 MtrunA17_Chr3g0106901 36.111 324 190 6 6 328 16 323 9.90e-54 179
Msa0007870 MtrunA17_Chr1g0181511 35.256 312 181 6 25 328 25 323 4.19e-53 177
Msa0007870 MtrunA17_Chr4g0074851 33.739 329 204 7 4 328 10 328 9.87e-53 176
Msa0007870 MtrunA17_Chr2g0316191 33.038 339 189 5 23 327 72 406 1.21e-52 178
Msa0007870 MtrunA17_Chr1g0181431 34.528 307 190 5 25 328 25 323 2.38e-52 175
Msa0007870 MtrunA17_Chr5g0421411 36.170 282 161 9 58 328 12 285 2.68e-52 174
Msa0007870 MtrunA17_Chr2g0311241 30.159 378 187 5 23 327 56 429 2.39e-50 172
Msa0007870 MtrunA17_Chr2g0311251 32.647 340 187 7 23 327 7 339 1.03e-49 169
Msa0007870 MtrunA17_Chr5g0413051 33.866 313 188 10 27 328 73 377 8.28e-47 162
Msa0007870 MtrunA17_Chr5g0432401 35.366 328 154 11 6 327 10 285 6.40e-44 152
Msa0007870 MtrunA17_Chr2g0292281 40.187 214 114 4 117 328 15 216 1.63e-43 149
Msa0007870 MtrunA17_Chr4g0004591 30.530 321 161 4 27 327 77 355 2.22e-41 147
Msa0007870 MtrunA17_Chr3g0114461 41.053 190 104 2 140 328 10 192 5.20e-40 139
Msa0007870 MtrunA17_Chr2g0316811 34.615 234 131 5 23 238 46 275 2.82e-37 136
Msa0007870 MtrunA17_Chr2g0316141 30.450 289 145 7 73 327 11 277 1.16e-28 112
Msa0007870 MtrunA17_Chr2g0316181 30.450 289 145 7 73 327 11 277 1.16e-28 112
Msa0007870 MtrunA17_Chr1g0181501 31.771 192 122 3 140 328 4 189 1.46e-22 93.2
Msa0007870 MtrunA17_Chr5g0432321 41.732 127 60 4 150 273 17 132 1.59e-21 88.6
Msa0007870 MtrunA17_Chr7g0254181 42.342 111 57 3 85 195 19 122 2.86e-19 83.2
Msa0007870 MtrunA17_Chr3g0114491 43.750 112 59 3 26 136 17 125 2.62e-18 80.1
Msa0007870 MtrunA17_Chr1g0181491 36.641 131 79 3 25 155 10 136 2.29e-17 77.8
Msa0007870 MtrunA17_Chr3g0104101 33.803 142 87 5 193 328 9 149 8.89e-17 76.3
Msa0007870 MtrunA17_Chr7g0268491 45.122 82 44 1 247 328 17 97 3.32e-15 70.5
Msa0007870 MtrunA17_Chr4g0013811 40.541 74 44 0 139 212 5 78 3.12e-13 64.3
Msa0007870 MtrunA17_Chr7g0254171 31.159 138 90 3 72 208 3 136 4.00e-12 63.2
Msa0007870 MtrunA17_Chr6g0468731 50.685 73 30 3 66 138 22 88 4.72e-12 61.6
Msa0007870 MtrunA17_Chr5g0423911 42.424 66 38 0 259 324 2 67 2.51e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007870 AT4G30170.1 67.427 307 97 1 22 328 22 325 1.89e-156 441
Msa0007870 AT2G18980.1 63.863 321 113 1 8 328 6 323 7.05e-151 427
Msa0007870 AT5G67400.1 58.055 329 137 1 1 328 1 329 2.18e-141 403
Msa0007870 AT4G37520.1 60.855 304 118 1 26 328 26 329 1.80e-140 400
Msa0007870 AT4G37530.1 60.131 306 121 1 24 328 24 329 3.14e-140 400
Msa0007870 AT4G37520.2 60.526 304 116 2 26 328 26 326 1.87e-137 393
Msa0007870 AT3G49960.1 57.716 324 135 2 7 328 6 329 2.42e-137 393
Msa0007870 AT4G37530.2 63.281 256 93 1 24 278 24 279 3.32e-122 352
Msa0007870 AT5G14130.1 52.795 322 148 3 7 328 13 330 3.23e-115 337
Msa0007870 AT5G14130.2 52.795 322 148 3 7 328 54 371 8.20e-115 337
Msa0007870 AT4G17690.1 47.213 305 150 5 27 328 26 322 9.96e-93 279
Msa0007870 AT5G47000.1 43.976 332 172 7 3 328 7 330 5.50e-89 270
Msa0007870 AT5G40150.1 43.887 319 162 5 16 328 21 328 6.10e-89 270
Msa0007870 AT3G28200.1 43.506 308 160 5 25 328 19 316 3.87e-87 265
Msa0007870 AT2G34060.1 40.294 340 188 5 1 327 8 345 7.58e-86 262
Msa0007870 AT1G24110.1 43.034 323 179 4 8 328 3 322 9.31e-81 248
Msa0007870 AT5G42180.1 42.089 316 174 5 13 327 9 316 8.17e-80 246
Msa0007870 AT2G18140.1 40.663 332 184 3 8 328 6 335 1.49e-79 246
Msa0007870 AT1G05260.1 39.394 330 193 4 1 328 1 325 1.15e-78 243
Msa0007870 AT3G21770.1 40.323 310 179 4 19 326 21 326 8.31e-78 241
Msa0007870 AT2G18150.1 38.739 333 190 3 8 328 6 336 1.27e-76 238
Msa0007870 AT4G31760.1 40.252 318 180 5 13 328 17 326 2.97e-76 237
Msa0007870 AT5G06730.1 40.308 325 185 6 9 328 14 334 3.49e-76 238
Msa0007870 AT4G36430.1 41.118 304 176 2 26 328 29 330 8.12e-76 236
Msa0007870 AT4G16270.1 43.000 300 162 7 32 328 55 348 8.64e-76 236
Msa0007870 AT5G15180.1 39.506 324 190 4 6 328 11 329 3.22e-75 234
Msa0007870 AT2G38380.1 41.693 319 175 6 16 328 20 333 3.78e-75 235
Msa0007870 AT4G11290.1 40.248 323 185 5 10 328 8 326 5.11e-75 234
Msa0007870 AT5G64120.1 38.369 331 191 6 3 328 6 328 1.88e-74 233
Msa0007870 AT1G71695.1 39.474 342 183 7 3 328 6 339 6.42e-74 232
Msa0007870 AT3G50990.1 41.104 326 182 5 10 328 19 341 2.68e-73 230
Msa0007870 AT1G05240.1 39.672 305 176 4 27 328 26 325 3.79e-73 229
Msa0007870 AT1G05250.1 39.672 305 176 4 27 328 26 325 3.79e-73 229
Msa0007870 AT5G51890.1 38.679 318 186 6 13 328 12 322 3.81e-73 229
Msa0007870 AT5G06720.1 39.077 325 186 5 13 328 12 333 4.19e-73 229
Msa0007870 AT5G19880.1 40.923 325 182 6 10 328 9 329 4.50e-73 229
Msa0007870 AT3G01190.1 41.325 317 178 5 13 328 12 321 6.15e-73 228
Msa0007870 AT5G17820.1 39.024 328 184 6 1 328 2 313 8.96e-73 228
Msa0007870 AT5G39580.1 38.820 322 188 5 8 328 6 319 2.12e-72 227
Msa0007870 AT3G32980.1 39.275 331 193 5 3 328 7 334 4.96e-72 227
Msa0007870 AT2G24800.1 40.196 306 174 5 26 328 30 329 5.57e-72 226
Msa0007870 AT5G17820.2 39.024 328 184 6 1 328 55 366 8.70e-72 227
Msa0007870 AT2G38390.1 40.419 334 181 9 1 328 12 333 1.61e-70 223
Msa0007870 AT2G22420.1 37.730 326 195 6 4 328 1 319 4.92e-70 221
Msa0007870 AT4G33420.1 40.391 307 168 6 23 328 33 325 6.66e-70 221
Msa0007870 AT5G66390.1 41.000 300 172 4 31 328 37 333 1.19e-69 220
Msa0007870 AT5G05340.1 38.562 306 175 4 26 328 29 324 1.99e-69 219
Msa0007870 AT4G33420.2 40.391 307 168 6 23 328 80 372 2.52e-69 221
Msa0007870 AT3G49120.1 37.423 326 198 3 7 328 12 335 7.36e-69 219
Msa0007870 AT5G64110.1 40.867 323 175 6 14 328 16 330 7.43e-69 218
Msa0007870 AT5G19890.1 39.319 323 184 6 10 328 13 327 1.20e-68 218
Msa0007870 AT3G03670.1 37.538 325 191 7 8 328 5 321 8.02e-68 215
Msa0007870 AT3G49110.1 36.810 326 200 3 7 328 13 336 9.40e-68 216
Msa0007870 AT4G08780.1 38.436 307 183 3 26 328 23 327 4.20e-67 214
Msa0007870 AT1G14540.1 38.558 319 183 6 14 328 6 315 1.25e-66 212
Msa0007870 AT2G41480.1 37.195 328 194 5 6 328 8 328 4.32e-66 211
Msa0007870 AT1G49570.1 39.016 305 177 6 25 324 46 346 7.00e-66 211
Msa0007870 AT4G25980.1 38.318 321 187 5 13 328 12 326 9.75e-66 210
Msa0007870 AT2G39040.1 39.228 311 176 8 26 328 45 350 1.10e-65 211
Msa0007870 AT4G08770.1 37.134 307 187 3 26 328 23 327 8.81e-65 208
Msa0007870 AT4G33870.1 34.000 350 191 6 12 325 53 398 2.37e-64 209
Msa0007870 AT1G14550.1 38.973 331 183 11 3 328 5 321 9.14e-64 205
Msa0007870 AT1G30870.1 39.286 308 168 8 27 328 51 345 2.22e-62 202
Msa0007870 AT1G68850.1 35.588 340 202 10 1 328 1 335 3.15e-62 201
Msa0007870 AT4G26010.1 36.792 318 183 8 13 328 8 309 9.32e-62 199
Msa0007870 AT4G26010.2 36.792 318 183 8 13 328 36 337 1.53e-61 199
Msa0007870 AT5G58400.1 38.344 326 182 9 9 328 13 325 5.70e-61 197
Msa0007870 AT5G24070.1 37.742 310 178 6 26 328 34 335 1.47e-60 197
Msa0007870 AT2G43480.1 36.774 310 181 6 26 328 34 335 3.27e-60 196
Msa0007870 AT5G64100.1 38.284 303 174 6 29 328 39 331 5.36e-59 193
Msa0007870 AT1G44970.1 36.928 306 189 2 25 328 43 346 5.47e-59 193
Msa0007870 AT1G34510.1 37.107 318 182 7 13 328 8 309 1.49e-57 188
Msa0007870 AT5G22410.1 36.646 322 189 9 8 324 10 321 4.43e-57 188
Msa0007870 AT1G77100.1 35.152 330 197 7 4 328 2 319 2.06e-56 186
Msa0007870 AT2G35380.1 38.033 305 179 6 31 328 34 335 9.07e-55 182
Msa0007870 AT5G58390.1 36.923 325 187 9 10 328 4 316 1.71e-54 181
Msa0007870 AT4G21960.1 33.987 306 189 6 27 328 31 327 1.08e-51 174
Msa0007870 AT2G37130.1 34.740 308 187 5 26 328 29 327 9.25e-51 171
Msa0007870 AT2G37130.2 34.754 305 185 5 29 328 1 296 2.21e-50 169
Msa0007870 AT3G17070.1 32.132 333 203 8 7 328 19 339 7.75e-44 154
Msa0007870 AT2G35380.2 36.290 248 149 5 87 328 3 247 7.15e-37 133
Msa0007870 AT5G39580.2 38.265 196 114 3 8 203 6 194 2.42e-35 129
Msa0007870 AT2G24800.2 39.645 169 96 3 26 194 30 192 5.73e-33 122
Msa0007870 AT3G17070.2 30.712 267 170 6 69 328 18 276 3.47e-30 116
Msa0007870 AT4G25980.2 40.230 174 98 4 27 200 71 238 3.46e-29 114

Find 55 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAATTCGTTTCGAAAAT+TGG 0.126752 1_1:+11244346 None:intergenic
GGTTTCATGTGCTGACATTT+TGG 0.193486 1_1:-11245157 Msa0007870:CDS
TAAATTCTGGATGAGGTAAA+TGG 0.281278 1_1:+11244602 None:intergenic
GCCATGCGAAGCAAACATTT+TGG 0.290824 1_1:+11244564 None:intergenic
CCAGCTAGTGAAAGATTAAT+AGG 0.295737 1_1:+11245246 None:intergenic
TTGACTATTGATTCAACATT+TGG 0.300177 1_1:+11245530 None:intergenic
AGTCTAGGGTCAACATCTTT+TGG 0.323696 1_1:+11244252 None:intergenic
AAGAATCTTCAGCAAGGAAT+TGG 0.349074 1_1:-11244177 Msa0007870:CDS
TCAAATGTCCTAGGTGTAAT+AGG 0.351694 1_1:+11244213 None:intergenic
CAGCACATGAAACCTTGTTT+TGG 0.362555 1_1:+11245166 None:intergenic
ACTGATCTAATTGCTCTATC+AGG 0.379757 1_1:-11244532 Msa0007870:intron
AGCTTTGCTAGTTTAAATTC+TGG 0.381289 1_1:+11244589 None:intergenic
GTTGCAGGAGCGCATACTAT+TGG 0.391862 1_1:-11244384 Msa0007870:intron
GCTGAAGATTCTTGTAGTAC+TGG 0.400409 1_1:+11244187 None:intergenic
GGTCGAATCGGTGTCAAAAC+AGG 0.418276 1_1:-11244036 Msa0007870:CDS
TCATGAGCTGCAAAAGAAAC+AGG 0.424815 1_1:+11245603 None:intergenic
CCTATTAATCTTTCACTAGC+TGG 0.433861 1_1:-11245246 Msa0007870:CDS
GTCATTGCTATAACAAAGCT+TGG 0.446107 1_1:-11244057 Msa0007870:CDS
CGAATTTACAACTTCAAAAG+TGG 0.458989 1_1:-11244333 Msa0007870:CDS
ACCAAAATGTTTGCTTCGCA+TGG 0.466786 1_1:-11244565 Msa0007870:CDS
CGGTGTCAAAACAGGAAGAC+AGG 0.474584 1_1:-11244028 Msa0007870:CDS
GCCATCTTATGCAGTAGAGT+TGG 0.478366 1_1:-11244668 Msa0007870:CDS
GCTAGTTTAAATTCTGGATG+AGG 0.479771 1_1:+11244595 None:intergenic
CCATCTTATGCAGTAGAGTT+GGG 0.481756 1_1:-11244667 Msa0007870:CDS
ATAACAAAGCTTGGTCGAAT+CGG 0.497022 1_1:-11244048 Msa0007870:CDS
TGACCTGAACAAAACAATCA+TGG 0.497510 1_1:+11245441 None:intergenic
CTGATGCAAACAAGTTCACT+AGG 0.502413 1_1:+11244106 None:intergenic
AATCTTTCACTAGCTGGTGA+TGG 0.509300 1_1:-11245240 Msa0007870:CDS
TAGAGTTGGGACGGCTCGAT+GGG 0.527193 1_1:-11244654 Msa0007870:CDS
CCCTAGACTTGCCATTGACA+TGG 0.537266 1_1:-11244238 Msa0007870:CDS
AACTAGGGATGTCATAGCAT+TGG 0.540127 1_1:-11245127 Msa0007870:intron
GCTGCAGTTGATAGTGTACC+TGG 0.544755 1_1:-11245192 Msa0007870:CDS
GCATATCCACGATTAAGTGA+TGG 0.545065 1_1:+11244297 None:intergenic
TCCATGTCAATGGCAAGTCT+AGG 0.545251 1_1:+11244237 None:intergenic
TTACAGCACCTGCTACACTT+AGG 0.551805 1_1:-11245472 Msa0007870:CDS
CCCAACTCTACTGCATAAGA+TGG 0.558764 1_1:+11244667 None:intergenic
AATGACAAAGGATCTTTCAA+AGG 0.558847 1_1:+11244074 None:intergenic
GTAGAGTTGGGACGGCTCGA+TGG 0.559055 1_1:-11244655 Msa0007870:CDS
CCATGTCAATGGCAAGTCTA+GGG 0.561301 1_1:+11244238 None:intergenic
TGTAATAGGATCCATGTCAA+TGG 0.569424 1_1:+11244227 None:intergenic
TACTGGTTATCAAATGTCCT+AGG 0.574304 1_1:+11244204 None:intergenic
AAGAAACAGGTTAACAAGGA+AGG 0.580311 1_1:+11245616 None:intergenic
TGTACCTGGCTGCCAAAACA+AGG 0.585491 1_1:-11245178 Msa0007870:CDS
ACAGGTTAACAAGGAAGGTG+AGG 0.591799 1_1:+11245621 None:intergenic
GAATTTACAACTTCAAAAGT+GGG 0.602558 1_1:-11244332 Msa0007870:CDS
TTACAACTTCAAAAGTGGGA+AGG 0.608022 1_1:-11244328 Msa0007870:CDS
TGACACAGTAATCAAAGCAA+AGG 0.610314 1_1:-11245214 Msa0007870:CDS
CTTATGCAGTAGAGTTGGGA+CGG 0.614543 1_1:-11244663 Msa0007870:CDS
CTTTGTTATAGCAATGACAA+AGG 0.633095 1_1:+11244062 None:intergenic
ATTGATCCATCACTTAATCG+TGG 0.647751 1_1:-11244303 Msa0007870:CDS
GCAAAAGAAACAGGTTAACA+AGG 0.651841 1_1:+11245612 None:intergenic
CAATTAGATCAGTAAGAGTG+AGG 0.653342 1_1:+11244542 None:intergenic
TACTACAAGAATCTTCAGCA+AGG 0.656089 1_1:-11244183 Msa0007870:CDS
ACATGGATCCTATTACACCT+AGG 0.672246 1_1:-11244221 Msa0007870:CDS
GGTGTCAAAACAGGAAGACA+GGG 0.680653 1_1:-11244027 Msa0007870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTGCTTATAAAT+GGG + chr1_1:11244825-11244844 None:intergenic 10.0%
!!! TTTATAAATTTGCTTATAAA+TGG + chr1_1:11244826-11244845 None:intergenic 10.0%
!!! TTATAAATTTGCTTATAAAT+GGG + chr1_1:11244825-11244844 None:intergenic 10.0%
!!! TTTATAAATTTGCTTATAAA+TGG + chr1_1:11244826-11244845 None:intergenic 10.0%
!!! GTTTTACTAAACTATTATAA+CGG - chr1_1:11244745-11244764 Msa0007870:intron 15.0%
!! ATAAAATATCATTCTTCTTA+TGG - chr1_1:11244841-11244860 Msa0007870:intron 15.0%
!! ATAACATTATTGAATAACTT+TGG - chr1_1:11244873-11244892 Msa0007870:intron 15.0%
!! ATAATTTAAACTGAAATGAA+TGG - chr1_1:11245225-11245244 Msa0007870:CDS 15.0%
!!! GTTTTACTAAACTATTATAA+CGG - chr1_1:11244745-11244764 Msa0007870:intron 15.0%
!! ATAAAATATCATTCTTCTTA+TGG - chr1_1:11244841-11244860 Msa0007870:intron 15.0%
!! ATAACATTATTGAATAACTT+TGG - chr1_1:11244873-11244892 Msa0007870:intron 15.0%
!! ATAATTTAAACTGAAATGAA+TGG - chr1_1:11245225-11245244 Msa0007870:CDS 15.0%
!! TGCAATGATTAACTTATATT+AGG + chr1_1:11244575-11244594 None:intergenic 20.0%
!!! AAACTGAACAGAATTTTTAA+TGG + chr1_1:11244729-11244748 None:intergenic 20.0%
!! TGCAATGATTAACTTATATT+AGG + chr1_1:11244575-11244594 None:intergenic 20.0%
!!! AAACTGAACAGAATTTTTAA+TGG + chr1_1:11244729-11244748 None:intergenic 20.0%
!!! TTGACTATTGATTCAACATT+TGG + chr1_1:11244104-11244123 None:intergenic 25.0%
! TATTTGTGTATGTATGTACA+GGG - chr1_1:11244307-11244326 Msa0007870:CDS 25.0%
! CATTGCAATTTAGTAAAGTT+CGG - chr1_1:11244588-11244607 Msa0007870:CDS 25.0%
! ACTAAACTATTATAACGGTT+CGG - chr1_1:11244750-11244769 Msa0007870:intron 25.0%
! CAATGTTACAATTATCTACA+TGG + chr1_1:11244899-11244918 None:intergenic 25.0%
!!! AAATAATTGCTTTTTCAGAC+AGG - chr1_1:11244937-11244956 Msa0007870:intron 25.0%
! TGTAAATTCGTTTCGAAAAT+TGG + chr1_1:11245288-11245307 None:intergenic 25.0%
! GAATTTACAACTTCAAAAGT+GGG - chr1_1:11245299-11245318 Msa0007870:CDS 25.0%
!!! TTGACTATTGATTCAACATT+TGG + chr1_1:11244104-11244123 None:intergenic 25.0%
! TATTTGTGTATGTATGTACA+GGG - chr1_1:11244307-11244326 Msa0007870:CDS 25.0%
! CATTGCAATTTAGTAAAGTT+CGG - chr1_1:11244588-11244607 Msa0007870:CDS 25.0%
! ACTAAACTATTATAACGGTT+CGG - chr1_1:11244750-11244769 Msa0007870:intron 25.0%
! CAATGTTACAATTATCTACA+TGG + chr1_1:11244899-11244918 None:intergenic 25.0%
!!! AAATAATTGCTTTTTCAGAC+AGG - chr1_1:11244937-11244956 Msa0007870:intron 25.0%
! TGTAAATTCGTTTCGAAAAT+TGG + chr1_1:11245288-11245307 None:intergenic 25.0%
! GAATTTACAACTTCAAAAGT+GGG - chr1_1:11245299-11245318 Msa0007870:CDS 25.0%
!! TTTCCATGATTGTTTTGTTC+AGG - chr1_1:11244187-11244206 Msa0007870:CDS 30.0%
GTATTTGTGTATGTATGTAC+AGG - chr1_1:11244306-11244325 Msa0007870:CDS 30.0%
AATCAAACCAAACTGGTATA+AGG + chr1_1:11244697-11244716 None:intergenic 30.0%
TAAATTCTGGATGAGGTAAA+TGG + chr1_1:11245032-11245051 None:intergenic 30.0%
! AGCTTTGCTAGTTTAAATTC+TGG + chr1_1:11245045-11245064 None:intergenic 30.0%
GAATATGAGACTCGTTATTT+AGG - chr1_1:11245161-11245180 Msa0007870:CDS 30.0%
CGAATTTACAACTTCAAAAG+TGG - chr1_1:11245298-11245317 Msa0007870:CDS 30.0%
AATGACAAAGGATCTTTCAA+AGG + chr1_1:11245560-11245579 None:intergenic 30.0%
! CTTTGTTATAGCAATGACAA+AGG + chr1_1:11245572-11245591 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTTC+AGG - chr1_1:11244187-11244206 Msa0007870:CDS 30.0%
GTATTTGTGTATGTATGTAC+AGG - chr1_1:11244306-11244325 Msa0007870:CDS 30.0%
AATCAAACCAAACTGGTATA+AGG + chr1_1:11244697-11244716 None:intergenic 30.0%
TAAATTCTGGATGAGGTAAA+TGG + chr1_1:11245032-11245051 None:intergenic 30.0%
! AGCTTTGCTAGTTTAAATTC+TGG + chr1_1:11245045-11245064 None:intergenic 30.0%
GAATATGAGACTCGTTATTT+AGG - chr1_1:11245161-11245180 Msa0007870:CDS 30.0%
CGAATTTACAACTTCAAAAG+TGG - chr1_1:11245298-11245317 Msa0007870:CDS 30.0%
AATGACAAAGGATCTTTCAA+AGG + chr1_1:11245560-11245579 None:intergenic 30.0%
! CTTTGTTATAGCAATGACAA+AGG + chr1_1:11245572-11245591 None:intergenic 30.0%
AAGAAACAGGTTAACAAGGA+AGG + chr1_1:11244018-11244037 None:intergenic 35.0%
GCAAAAGAAACAGGTTAACA+AGG + chr1_1:11244022-11244041 None:intergenic 35.0%
TGACCTGAACAAAACAATCA+TGG + chr1_1:11244193-11244212 None:intergenic 35.0%
! AGGTCAGTGTTCTATGTTTT+TGG - chr1_1:11244207-11244226 Msa0007870:CDS 35.0%
CCAGCTAGTGAAAGATTAAT+AGG + chr1_1:11244388-11244407 None:intergenic 35.0%
CCTATTAATCTTTCACTAGC+TGG - chr1_1:11244385-11244404 Msa0007870:intron 35.0%
TGACACAGTAATCAAAGCAA+AGG - chr1_1:11244417-11244436 Msa0007870:intron 35.0%
! TAGTAAAGTTCGGTTCGAAA+AGG - chr1_1:11244598-11244617 Msa0007870:CDS 35.0%
!! ATAGTTCTAGTGTGTTCGAT+TGG - chr1_1:11244643-11244662 Msa0007870:CDS 35.0%
AACCAAACTGGTATAAGGTT+CGG + chr1_1:11244692-11244711 None:intergenic 35.0%
!! ATCAAGGTTTTAATCGGTTC+AGG + chr1_1:11244790-11244809 None:intergenic 35.0%
GAACCGATTAAAACCTTGAT+CGG - chr1_1:11244790-11244809 Msa0007870:intron 35.0%
AACCGATTAAAACCTTGATC+GGG - chr1_1:11244791-11244810 Msa0007870:intron 35.0%
!!! TAATTGCTTTTTCAGACAGG+AGG - chr1_1:11244940-11244959 Msa0007870:intron 35.0%
!!! AATTGCTTTTTCAGACAGGA+GGG - chr1_1:11244941-11244960 Msa0007870:intron 35.0%
! GCTAGTTTAAATTCTGGATG+AGG + chr1_1:11245039-11245058 None:intergenic 35.0%
CAATTAGATCAGTAAGAGTG+AGG + chr1_1:11245092-11245111 None:intergenic 35.0%
ACTGATCTAATTGCTCTATC+AGG - chr1_1:11245099-11245118 Msa0007870:intron 35.0%
AAACTGAAATGAATGGTTGC+AGG - chr1_1:11245232-11245251 Msa0007870:CDS 35.0%
TTACAACTTCAAAAGTGGGA+AGG - chr1_1:11245303-11245322 Msa0007870:CDS 35.0%
ATTGATCCATCACTTAATCG+TGG - chr1_1:11245328-11245347 Msa0007870:intron 35.0%
! CATCTTTTGGACACACATTT+TGG + chr1_1:11245369-11245388 None:intergenic 35.0%
TGTAATAGGATCCATGTCAA+TGG + chr1_1:11245407-11245426 None:intergenic 35.0%
TCAAATGTCCTAGGTGTAAT+AGG + chr1_1:11245421-11245440 None:intergenic 35.0%
! TACTGGTTATCAAATGTCCT+AGG + chr1_1:11245430-11245449 None:intergenic 35.0%
TACTACAAGAATCTTCAGCA+AGG - chr1_1:11245448-11245467 Msa0007870:CDS 35.0%
AAGAATCTTCAGCAAGGAAT+TGG - chr1_1:11245454-11245473 Msa0007870:CDS 35.0%
GTCATTGCTATAACAAAGCT+TGG - chr1_1:11245574-11245593 Msa0007870:CDS 35.0%
ATAACAAAGCTTGGTCGAAT+CGG - chr1_1:11245583-11245602 Msa0007870:CDS 35.0%
AAGAAACAGGTTAACAAGGA+AGG + chr1_1:11244018-11244037 None:intergenic 35.0%
GCAAAAGAAACAGGTTAACA+AGG + chr1_1:11244022-11244041 None:intergenic 35.0%
TGACCTGAACAAAACAATCA+TGG + chr1_1:11244193-11244212 None:intergenic 35.0%
! AGGTCAGTGTTCTATGTTTT+TGG - chr1_1:11244207-11244226 Msa0007870:CDS 35.0%
CCAGCTAGTGAAAGATTAAT+AGG + chr1_1:11244388-11244407 None:intergenic 35.0%
CCTATTAATCTTTCACTAGC+TGG - chr1_1:11244385-11244404 Msa0007870:intron 35.0%
TGACACAGTAATCAAAGCAA+AGG - chr1_1:11244417-11244436 Msa0007870:intron 35.0%
! TAGTAAAGTTCGGTTCGAAA+AGG - chr1_1:11244598-11244617 Msa0007870:CDS 35.0%
!! ATAGTTCTAGTGTGTTCGAT+TGG - chr1_1:11244643-11244662 Msa0007870:CDS 35.0%
AACCAAACTGGTATAAGGTT+CGG + chr1_1:11244692-11244711 None:intergenic 35.0%
!! ATCAAGGTTTTAATCGGTTC+AGG + chr1_1:11244790-11244809 None:intergenic 35.0%
GAACCGATTAAAACCTTGAT+CGG - chr1_1:11244790-11244809 Msa0007870:intron 35.0%
AACCGATTAAAACCTTGATC+GGG - chr1_1:11244791-11244810 Msa0007870:intron 35.0%
!!! TAATTGCTTTTTCAGACAGG+AGG - chr1_1:11244940-11244959 Msa0007870:intron 35.0%
!!! AATTGCTTTTTCAGACAGGA+GGG - chr1_1:11244941-11244960 Msa0007870:intron 35.0%
! GCTAGTTTAAATTCTGGATG+AGG + chr1_1:11245039-11245058 None:intergenic 35.0%
CAATTAGATCAGTAAGAGTG+AGG + chr1_1:11245092-11245111 None:intergenic 35.0%
ACTGATCTAATTGCTCTATC+AGG - chr1_1:11245099-11245118 Msa0007870:intron 35.0%
AAACTGAAATGAATGGTTGC+AGG - chr1_1:11245232-11245251 Msa0007870:CDS 35.0%
TTACAACTTCAAAAGTGGGA+AGG - chr1_1:11245303-11245322 Msa0007870:CDS 35.0%
ATTGATCCATCACTTAATCG+TGG - chr1_1:11245328-11245347 Msa0007870:intron 35.0%
! CATCTTTTGGACACACATTT+TGG + chr1_1:11245369-11245388 None:intergenic 35.0%
TGTAATAGGATCCATGTCAA+TGG + chr1_1:11245407-11245426 None:intergenic 35.0%
TCAAATGTCCTAGGTGTAAT+AGG + chr1_1:11245421-11245440 None:intergenic 35.0%
! TACTGGTTATCAAATGTCCT+AGG + chr1_1:11245430-11245449 None:intergenic 35.0%
TACTACAAGAATCTTCAGCA+AGG - chr1_1:11245448-11245467 Msa0007870:CDS 35.0%
AAGAATCTTCAGCAAGGAAT+TGG - chr1_1:11245454-11245473 Msa0007870:CDS 35.0%
GTCATTGCTATAACAAAGCT+TGG - chr1_1:11245574-11245593 Msa0007870:CDS 35.0%
ATAACAAAGCTTGGTCGAAT+CGG - chr1_1:11245583-11245602 Msa0007870:CDS 35.0%
TCATGAGCTGCAAAAGAAAC+AGG + chr1_1:11244031-11244050 None:intergenic 40.0%
AAAAAGAGCCTAAGTGTAGC+AGG + chr1_1:11244170-11244189 None:intergenic 40.0%
AATCTTTCACTAGCTGGTGA+TGG - chr1_1:11244391-11244410 Msa0007870:intron 40.0%
!! CAGCACATGAAACCTTGTTT+TGG + chr1_1:11244468-11244487 None:intergenic 40.0%
!! GGTTTCATGTGCTGACATTT+TGG - chr1_1:11244474-11244493 Msa0007870:intron 40.0%
!! ATGTGCTGACATTTTGGCAT+TGG - chr1_1:11244480-11244499 Msa0007870:intron 40.0%
!!! ACATTTTGGCATTGGCAACT+AGG - chr1_1:11244488-11244507 Msa0007870:intron 40.0%
!!! CATTTTGGCATTGGCAACTA+GGG - chr1_1:11244489-11244508 Msa0007870:intron 40.0%
AACTAGGGATGTCATAGCAT+TGG - chr1_1:11244504-11244523 Msa0007870:intron 40.0%
! TTGGACTGGAAACATGAAAC+TGG - chr1_1:11244662-11244681 Msa0007870:CDS 40.0%
TACCGAACCTTATACCAGTT+TGG - chr1_1:11244687-11244706 Msa0007870:intron 40.0%
TGTCGTGAATCAAACCAAAC+TGG + chr1_1:11244704-11244723 None:intergenic 40.0%
!! AGGTTTTAATCGGTTCAGGA+AGG + chr1_1:11244786-11244805 None:intergenic 40.0%
!! CTCCCGATCAAGGTTTTAAT+CGG + chr1_1:11244796-11244815 None:intergenic 40.0%
CCATCTTATGCAGTAGAGTT+GGG - chr1_1:11244964-11244983 Msa0007870:intron 40.0%
ACCAAAATGTTTGCTTCGCA+TGG - chr1_1:11245066-11245085 Msa0007870:intron 40.0%
GCATATCCACGATTAAGTGA+TGG + chr1_1:11245337-11245356 None:intergenic 40.0%
!! AGTCTAGGGTCAACATCTTT+TGG + chr1_1:11245382-11245401 None:intergenic 40.0%
ACATGGATCCTATTACACCT+AGG - chr1_1:11245410-11245429 Msa0007870:intron 40.0%
GCTGAAGATTCTTGTAGTAC+TGG + chr1_1:11245447-11245466 None:intergenic 40.0%
CTGATGCAAACAAGTTCACT+AGG + chr1_1:11245528-11245547 None:intergenic 40.0%
TCATGAGCTGCAAAAGAAAC+AGG + chr1_1:11244031-11244050 None:intergenic 40.0%
AAAAAGAGCCTAAGTGTAGC+AGG + chr1_1:11244170-11244189 None:intergenic 40.0%
AATCTTTCACTAGCTGGTGA+TGG - chr1_1:11244391-11244410 Msa0007870:intron 40.0%
!! CAGCACATGAAACCTTGTTT+TGG + chr1_1:11244468-11244487 None:intergenic 40.0%
!! GGTTTCATGTGCTGACATTT+TGG - chr1_1:11244474-11244493 Msa0007870:intron 40.0%
!! ATGTGCTGACATTTTGGCAT+TGG - chr1_1:11244480-11244499 Msa0007870:intron 40.0%
!!! ACATTTTGGCATTGGCAACT+AGG - chr1_1:11244488-11244507 Msa0007870:intron 40.0%
!!! CATTTTGGCATTGGCAACTA+GGG - chr1_1:11244489-11244508 Msa0007870:intron 40.0%
AACTAGGGATGTCATAGCAT+TGG - chr1_1:11244504-11244523 Msa0007870:intron 40.0%
! TTGGACTGGAAACATGAAAC+TGG - chr1_1:11244662-11244681 Msa0007870:CDS 40.0%
TACCGAACCTTATACCAGTT+TGG - chr1_1:11244687-11244706 Msa0007870:intron 40.0%
TGTCGTGAATCAAACCAAAC+TGG + chr1_1:11244704-11244723 None:intergenic 40.0%
!! AGGTTTTAATCGGTTCAGGA+AGG + chr1_1:11244786-11244805 None:intergenic 40.0%
!! CTCCCGATCAAGGTTTTAAT+CGG + chr1_1:11244796-11244815 None:intergenic 40.0%
CCATCTTATGCAGTAGAGTT+GGG - chr1_1:11244964-11244983 Msa0007870:intron 40.0%
ACCAAAATGTTTGCTTCGCA+TGG - chr1_1:11245066-11245085 Msa0007870:intron 40.0%
GCATATCCACGATTAAGTGA+TGG + chr1_1:11245337-11245356 None:intergenic 40.0%
!! AGTCTAGGGTCAACATCTTT+TGG + chr1_1:11245382-11245401 None:intergenic 40.0%
ACATGGATCCTATTACACCT+AGG - chr1_1:11245410-11245429 Msa0007870:intron 40.0%
GCTGAAGATTCTTGTAGTAC+TGG + chr1_1:11245447-11245466 None:intergenic 40.0%
CTGATGCAAACAAGTTCACT+AGG + chr1_1:11245528-11245547 None:intergenic 40.0%
ACAGGTTAACAAGGAAGGTG+AGG + chr1_1:11244013-11244032 None:intergenic 45.0%
TTACAGCACCTGCTACACTT+AGG - chr1_1:11244159-11244178 Msa0007870:CDS 45.0%
TCTAGTGTGTTCGATTGGAC+TGG - chr1_1:11244648-11244667 Msa0007870:CDS 45.0%
! ATCGGTTCAGGAAGGAAAAC+TGG + chr1_1:11244778-11244797 None:intergenic 45.0%
CGATTAAAACCTTGATCGGG+AGG - chr1_1:11244794-11244813 Msa0007870:intron 45.0%
GCCATCTTATGCAGTAGAGT+TGG - chr1_1:11244963-11244982 Msa0007870:intron 45.0%
CCCAACTCTACTGCATAAGA+TGG + chr1_1:11244967-11244986 None:intergenic 45.0%
CTTATGCAGTAGAGTTGGGA+CGG - chr1_1:11244968-11244987 Msa0007870:intron 45.0%
! GCCATGCGAAGCAAACATTT+TGG + chr1_1:11245070-11245089 None:intergenic 45.0%
CCATGTCAATGGCAAGTCTA+GGG + chr1_1:11245396-11245415 None:intergenic 45.0%
TCCATGTCAATGGCAAGTCT+AGG + chr1_1:11245397-11245416 None:intergenic 45.0%
GGTGTCAAAACAGGAAGACA+GGG - chr1_1:11245604-11245623 Msa0007870:CDS 45.0%
ACAGGTTAACAAGGAAGGTG+AGG + chr1_1:11244013-11244032 None:intergenic 45.0%
TTACAGCACCTGCTACACTT+AGG - chr1_1:11244159-11244178 Msa0007870:CDS 45.0%
TCTAGTGTGTTCGATTGGAC+TGG - chr1_1:11244648-11244667 Msa0007870:CDS 45.0%
! ATCGGTTCAGGAAGGAAAAC+TGG + chr1_1:11244778-11244797 None:intergenic 45.0%
CGATTAAAACCTTGATCGGG+AGG - chr1_1:11244794-11244813 Msa0007870:intron 45.0%
GCCATCTTATGCAGTAGAGT+TGG - chr1_1:11244963-11244982 Msa0007870:intron 45.0%
CCCAACTCTACTGCATAAGA+TGG + chr1_1:11244967-11244986 None:intergenic 45.0%
CTTATGCAGTAGAGTTGGGA+CGG - chr1_1:11244968-11244987 Msa0007870:intron 45.0%
! GCCATGCGAAGCAAACATTT+TGG + chr1_1:11245070-11245089 None:intergenic 45.0%
CCATGTCAATGGCAAGTCTA+GGG + chr1_1:11245396-11245415 None:intergenic 45.0%
TCCATGTCAATGGCAAGTCT+AGG + chr1_1:11245397-11245416 None:intergenic 45.0%
GGTGTCAAAACAGGAAGACA+GGG - chr1_1:11245604-11245623 Msa0007870:CDS 45.0%
GTCGTGTCTAGTGTCTGTGT+CGG - chr1_1:11244241-11244260 Msa0007870:CDS 50.0%
!! GCTGCAGTTGATAGTGTACC+TGG - chr1_1:11244439-11244458 Msa0007870:intron 50.0%
TGTACCTGGCTGCCAAAACA+AGG - chr1_1:11244453-11244472 Msa0007870:intron 50.0%
!!! GAAACCTTGTTTTGGCAGCC+AGG + chr1_1:11244460-11244479 None:intergenic 50.0%
! GTTGCAGGAGCGCATACTAT+TGG - chr1_1:11245247-11245266 Msa0007870:CDS 50.0%
CCCTAGACTTGCCATTGACA+TGG - chr1_1:11245393-11245412 Msa0007870:intron 50.0%
!! GGTCGAATCGGTGTCAAAAC+AGG - chr1_1:11245595-11245614 Msa0007870:CDS 50.0%
! CGGTGTCAAAACAGGAAGAC+AGG - chr1_1:11245603-11245622 Msa0007870:CDS 50.0%
GTCGTGTCTAGTGTCTGTGT+CGG - chr1_1:11244241-11244260 Msa0007870:CDS 50.0%
!! GCTGCAGTTGATAGTGTACC+TGG - chr1_1:11244439-11244458 Msa0007870:intron 50.0%
TGTACCTGGCTGCCAAAACA+AGG - chr1_1:11244453-11244472 Msa0007870:intron 50.0%
!!! GAAACCTTGTTTTGGCAGCC+AGG + chr1_1:11244460-11244479 None:intergenic 50.0%
! GTTGCAGGAGCGCATACTAT+TGG - chr1_1:11245247-11245266 Msa0007870:CDS 50.0%
CCCTAGACTTGCCATTGACA+TGG - chr1_1:11245393-11245412 Msa0007870:intron 50.0%
!! GGTCGAATCGGTGTCAAAAC+AGG - chr1_1:11245595-11245614 Msa0007870:CDS 50.0%
! CGGTGTCAAAACAGGAAGAC+AGG - chr1_1:11245603-11245622 Msa0007870:CDS 50.0%
TAGAGTTGGGACGGCTCGAT+GGG - chr1_1:11244977-11244996 Msa0007870:intron 55.0%
TAGAGTTGGGACGGCTCGAT+GGG - chr1_1:11244977-11244996 Msa0007870:intron 55.0%
TGGGAGTAGCCTCCCGATCA+AGG + chr1_1:11244806-11244825 None:intergenic 60.0%
GTAGAGTTGGGACGGCTCGA+TGG - chr1_1:11244976-11244995 Msa0007870:intron 60.0%
TGGGAGTAGCCTCCCGATCA+AGG + chr1_1:11244806-11244825 None:intergenic 60.0%
GTAGAGTTGGGACGGCTCGA+TGG - chr1_1:11244976-11244995 Msa0007870:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 11243993 11245660 11243993 ID=Msa0007870;Name=Msa0007870
chr1_1 mRNA 11243993 11245660 11243993 ID=Msa0007870-mRNA-1;Parent=Msa0007870;Name=Msa0007870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0|1|1|1|4|0|328
chr1_1 exon 11245445 11245660 11245445 ID=Msa0007870-mRNA-1:exon:4179;Parent=Msa0007870-mRNA-1
chr1_1 exon 11245128 11245325 11245128 ID=Msa0007870-mRNA-1:exon:4178;Parent=Msa0007870-mRNA-1
chr1_1 exon 11244533 11244698 11244533 ID=Msa0007870-mRNA-1:exon:4177;Parent=Msa0007870-mRNA-1
chr1_1 exon 11243993 11244399 11243993 ID=Msa0007870-mRNA-1:exon:4176;Parent=Msa0007870-mRNA-1
chr1_1 CDS 11245445 11245660 11245445 ID=Msa0007870-mRNA-1:cds;Parent=Msa0007870-mRNA-1
chr1_1 CDS 11245128 11245325 11245128 ID=Msa0007870-mRNA-1:cds;Parent=Msa0007870-mRNA-1
chr1_1 CDS 11244533 11244698 11244533 ID=Msa0007870-mRNA-1:cds;Parent=Msa0007870-mRNA-1
chr1_1 CDS 11243993 11244399 11243993 ID=Msa0007870-mRNA-1:cds;Parent=Msa0007870-mRNA-1
Gene Sequence

>Msa0007870

ATGGGTTCTCTCAGCTTCCTCACCTTCCTTGTTAACCTGTTTCTTTTGCAGCTCATGACTACTTGTAATGCAACAAAACTTAGAGTTGACTATTACAGAAACACATGTCCAAATGTTGAATCAATAGTCAAAAATGCAGTTGAGATGAAACTTCAGCAAACATTTGTTACAGCACCTGCTACACTTAGGCTCTTTTTCCATGATTGTTTTGTTCAGGGATGTGATGCTTCTGTGATGTTAGCTACAAGAAACAGCACTTCAGAAAAAGATAATCCTATTAATCTTTCACTAGCTGGTGATGGATTTGACACAGTAATCAAAGCAAAGGCTGCAGTTGATAGTGTACCTGGCTGCCAAAACAAGGTTTCATGTGCTGACATTTTGGCATTGGCAACTAGGGATGTCATAGCATTGACAGGAGGGCCATCTTATGCAGTAGAGTTGGGACGGCTCGATGGGAGAACATCTACAAAAGCAAGTGTGACAAACCATTTACCTCATCCAGAATTTAAACTAGCAAAGCTAACCAAAATGTTTGCTTCGCATGGCCTCACTCTTACTGATCTAATTGCTCTATCAGGAGCGCATACTATTGGATTCTCTCACTGCAGCCAATTTTCGAAACGAATTTACAACTTCAAAAGTGGGAAGGTAATTGATCCATCACTTAATCGTGGATATGCAAAACAGCTCCAAAATGTGTGTCCAAAAGATGTTGACCCTAGACTTGCCATTGACATGGATCCTATTACACCTAGGACATTTGATAACCAGTACTACAAGAATCTTCAGCAAGGAATTGGACTACTCTCTTCAGATCAATCTTTGTTTACTCATAAAAGTTCAAGAAACCTAGTGAACTTGTTTGCATCAGATAACACAGCCTTTGAAAGATCCTTTGTCATTGCTATAACAAAGCTTGGTCGAATCGGTGTCAAAACAGGAAGACAGGGCGAAATCAGACGCGATTGCTCGATGATTAACTGA
Protein sequence

>Msa0007870

MGSLSFLTFLVNLFLLQLMTTCNATKLRVDYYRNTCPNVESIVKNAVEMKLQQTFVTAPATLRLFFHDCFVQGCDASVMLATRNSTSEKDNPINLSLAGDGFDTVIKAKAAVDSVPGCQNKVSCADILALATRDVIALTGGPSYAVELGRLDGRTSTKASVTNHLPHPEFKLAKLTKMFASHGLTLTDLIALSGAHTIGFSHCSQFSKRIYNFKSGKVIDPSLNRGYAKQLQNVCPKDVDPRLAIDMDPITPRTFDNQYYKNLQQGIGLLSSDQSLFTHKSSRNLVNLFASDNTAFERSFVIAITKLGRIGVKTGRQGEIRRDCSMIN*