AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1300570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300570 MtrunA17_Chr4g0065821 91.286 241 14 2 1 241 1 234 8.58e-160 442
Msa1300570 MtrunA17_Chr4g0065781 64.730 241 82 2 1 241 1 238 3.33e-107 309
Msa1300570 MtrunA17_Chr4g0065791 58.921 241 84 3 1 241 1 226 3.48e-98 285
Msa1300570 MtrunA17_Chr4g0065811 84.932 146 22 0 96 241 1 146 1.83e-87 255
Msa1300570 MtrunA17_Chr2g0287281 47.556 225 115 2 18 241 22 244 1.44e-66 206
Msa1300570 MtrunA17_Chr4g0065801 73.333 60 14 1 1 60 55 112 1.79e-22 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1300570 AT3G23600.1 61.411 241 91 1 1 241 1 239 5.87e-110 316
Msa1300570 AT3G23600.2 60.581 241 90 2 1 241 1 236 2.29e-106 307
Msa1300570 AT3G23570.3 57.676 241 100 1 1 241 1 239 8.13e-101 293
Msa1300570 AT3G23570.1 57.676 241 100 1 1 241 1 239 8.13e-101 293
Msa1300570 AT3G23570.2 57.676 241 100 1 1 241 1 239 8.13e-101 293
Msa1300570 AT1G35420.3 25.962 208 138 6 41 240 74 273 5.42e-17 78.6
Msa1300570 AT1G35420.2 25.962 208 138 6 41 240 115 314 8.84e-17 78.6
Msa1300570 AT1G35420.1 25.962 208 138 6 41 240 110 309 8.94e-17 78.2

Find 66 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGAAGCCTTCACAGCTTC+TGG 0.161900 8_3:+62173268 None:intergenic
AAAACAATTTGAACAAGTTT+TGG 0.262734 8_3:-62173735 Msa1300570:CDS
CTATAGGTCTGTCAACATTC+TGG 0.278776 8_3:+62174772 None:intergenic
CACGGCAGCTTGGATGAGTT+TGG 0.291730 8_3:+62174298 None:intergenic
AGTAAAGGTATTTCTACTAT+TGG 0.306037 8_3:-62174483 Msa1300570:CDS
TCTCGCATGGCTGGACTATA+AGG 0.338659 8_3:-62173306 Msa1300570:CDS
CTGAAGCCTTCACAGCTTCT+GGG 0.359372 8_3:+62173269 None:intergenic
AATATTCCAATTGCTATACT+TGG 0.381640 8_3:-62173794 Msa1300570:CDS
TTCCTAATGTCTCGCATGGC+TGG 0.401802 8_3:-62173315 Msa1300570:CDS
CACGTCAGATCTTGTTGGAT+TGG 0.404632 8_3:-62173240 Msa1300570:CDS
ATTTCTACTATTGGAGCTGC+TGG 0.404890 8_3:-62174474 Msa1300570:CDS
TTGACAGACCTATAGATGTT+TGG 0.407177 8_3:-62174764 Msa1300570:CDS
GCTAAGACTGTGTGTGAACT+TGG 0.413908 8_3:-62174326 Msa1300570:CDS
GCAGACAAGGTTGCAGCAAC+CGG 0.418523 8_3:-62174843 Msa1300570:CDS
TATAGGTCTGTCAACATTCT+GGG 0.426489 8_3:+62174773 None:intergenic
CTGAACTCCTTCAGTGGTGC+TGG 0.438411 8_3:-62175324 Msa1300570:CDS
GGTGTTGATGCTTATCTCAC+TGG 0.438465 8_3:-62175282 Msa1300570:CDS
TAAAAGTACTAACTGGTTGA+TGG 0.439377 8_3:+62174733 None:intergenic
TCAGCTCCAAGTATAGCAAT+TGG 0.450408 8_3:+62173788 None:intergenic
GTATTATATTTATAGGAGAA+AGG 0.450413 8_3:-62174543 Msa1300570:intron
TCTTTCACCCAAACATCTAT+AGG 0.455726 8_3:+62174756 None:intergenic
GTCCAGCCATGCGAGACATT+AGG 0.464533 8_3:+62173313 None:intergenic
TGACAGACCTATAGATGTTT+GGG 0.465529 8_3:-62174763 Msa1300570:CDS
TCTTAAGTGAGAAATCTTGT+TGG 0.473769 8_3:-62173206 Msa1300570:exon
TGACCTCTGGAGGAGTAACT+TGG 0.499609 8_3:+62173759 None:intergenic
CCACTGAAGGAGTTCAGAAC+TGG 0.500926 8_3:+62175330 None:intergenic
GCTGGCCATGTTGCTAAACT+TGG 0.501919 8_3:-62175306 Msa1300570:CDS
GGAGGCACGTCAGATCTTGT+TGG 0.510275 8_3:-62173245 Msa1300570:CDS
GGATCGCCGTTGAAGAAGTC+GGG 0.513477 8_3:+62174804 None:intergenic
AATGTCGGAGACGAGGAGAA+TGG 0.515388 8_3:+62175239 None:intergenic
AGAAGCTGTGAAGGCTTCAG+AGG 0.515748 8_3:-62173266 Msa1300570:CDS
GGCCATGTTGCTAAACTTGG+TGG 0.517313 8_3:-62175303 Msa1300570:CDS
GTGAAGGATGTTTGCAGACA+AGG 0.524084 8_3:-62174856 Msa1300570:intron
TGTTGTAAATAATAAAAGCA+TGG 0.526441 8_3:+62173140 None:intergenic
GTGGTTCCCGACTTCTTCAA+CGG 0.543789 8_3:-62174810 Msa1300570:CDS
TCAACATTCTGGGGATCGTA+GGG 0.550493 8_3:+62174783 None:intergenic
GCAAAATACATGAGAAGGAA+AGG 0.551853 8_3:+62175198 None:intergenic
GGCGGGTTTGAGCAGCATGC+CGG 0.559592 8_3:+62175351 None:intergenic
GGGAACCACCACATAATATC+CGG 0.564070 8_3:+62174824 None:intergenic
GTCAACATTCTGGGGATCGT+AGG 0.566995 8_3:+62174782 None:intergenic
ATATTTCCTAATGTCTCGCA+TGG 0.567492 8_3:-62173319 Msa1300570:CDS
TCGTCCACTGTGATATATGA+TGG 0.569466 8_3:+62174266 None:intergenic
TACCGAAAATGTCGGAGACG+AGG 0.570501 8_3:+62175232 None:intergenic
TAAAGACCCAGAAGCTGTGA+AGG 0.579286 8_3:-62173275 Msa1300570:CDS
GGGATCGCCGTTGAAGAAGT+CGG 0.584664 8_3:+62174803 None:intergenic
CTGAAGGAGTTCAGAACTGG+CGG 0.590785 8_3:+62175333 None:intergenic
TGCAGCAACCGGATATTATG+TGG 0.592827 8_3:-62174832 Msa1300570:CDS
CCTCCGCAAAATACATGAGA+AGG 0.598547 8_3:+62175193 None:intergenic
GATGTGCTAACACGGCAGCT+TGG 0.600195 8_3:+62174288 None:intergenic
CCAGTTCTGAACTCCTTCAG+TGG 0.601307 8_3:-62175330 Msa1300570:CDS
CTAAGACTGTGTGTGAACTT+GGG 0.604992 8_3:-62174325 Msa1300570:CDS
AACATGGCCAGCACCACTGA+AGG 0.605814 8_3:+62175317 None:intergenic
CACCACCAAGTTTAGCAACA+TGG 0.606489 8_3:+62175301 None:intergenic
AGCTGTGAAGGCTTCAGAGG+AGG 0.607631 8_3:-62173263 Msa1300570:CDS
TGAAGGAGTTCAGAACTGGC+GGG 0.608726 8_3:+62175334 None:intergenic
GGAGACGAGGAGAATGGCGA+AGG 0.615322 8_3:+62175245 None:intergenic
ATAGGTCTGTCAACATTCTG+GGG 0.625001 8_3:+62174774 None:intergenic
ATCACAGTGGACGACATCAA+AGG 0.644789 8_3:-62174257 Msa1300570:intron
TAGAACAGTACCGAAAATGT+CGG 0.648160 8_3:+62175224 None:intergenic
AGAATGGCGAAGGTGCAAAG+AGG 0.653955 8_3:+62175255 None:intergenic
ATGAAGAACTCCTAGAGTGG+AGG 0.658305 8_3:-62173183 Msa1300570:three_prime_UTR
TGGATGAAGAACTCCTAGAG+TGG 0.659595 8_3:-62173186 Msa1300570:three_prime_UTR
ATATGATGGATGTGCTAACA+CGG 0.668508 8_3:+62174280 None:intergenic
AGCAACCGGATATTATGTGG+TGG 0.672628 8_3:-62174829 Msa1300570:CDS
CGACCAAGTTACTCCTCCAG+AGG 0.688981 8_3:-62173762 Msa1300570:CDS
ACATCCATCATATATCACAG+TGG 0.821753 8_3:-62174270 Msa1300570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTCAAATATATTTAAAAT+TGG + chr8_3:62174380-62174399 None:intergenic 10.0%
!! AAAAAAAATATTCTAATAAG+CGG + chr8_3:62174484-62174503 None:intergenic 10.0%
!!! AATATTTTTTTTTTTGAAGA+AGG - chr8_3:62174492-62174511 Msa1300570:CDS 10.0%
!!! ATATTTTTTTTTTTGAAGAA+GGG - chr8_3:62174493-62174512 Msa1300570:CDS 10.0%
!!! TTTTAAAACATATTATTTGT+CGG - chr8_3:62174539-62174558 Msa1300570:intron 10.0%
!! GAAAATTTATCATAATATTT+GGG + chr8_3:62174632-62174651 None:intergenic 10.0%
!!! CATTCAAATATATTTAAAAT+TGG + chr8_3:62174380-62174399 None:intergenic 10.0%
!! AAAAAAAATATTCTAATAAG+CGG + chr8_3:62174484-62174503 None:intergenic 10.0%
!!! AATATTTTTTTTTTTGAAGA+AGG - chr8_3:62174492-62174511 Msa1300570:CDS 10.0%
!!! ATATTTTTTTTTTTGAAGAA+GGG - chr8_3:62174493-62174512 Msa1300570:CDS 10.0%
!!! TTTTAAAACATATTATTTGT+CGG - chr8_3:62174539-62174558 Msa1300570:intron 10.0%
!! GAAAATTTATCATAATATTT+GGG + chr8_3:62174632-62174651 None:intergenic 10.0%
!!! AAATATAGATTTTGACTTTT+TGG - chr8_3:62173544-62173563 Msa1300570:intron 15.0%
!! TAAATATATTTGAATGTAAG+AGG - chr8_3:62174384-62174403 Msa1300570:intron 15.0%
!! GGAAAATTTATCATAATATT+TGG + chr8_3:62174633-62174652 None:intergenic 15.0%
!! TAAATAACAACAAAATAGAA+TGG + chr8_3:62174824-62174843 None:intergenic 15.0%
!! TAGTATATTGGAATTTAATT+TGG + chr8_3:62174934-62174953 None:intergenic 15.0%
!!! AAATATAGATTTTGACTTTT+TGG - chr8_3:62173544-62173563 Msa1300570:intron 15.0%
!! TAAATATATTTGAATGTAAG+AGG - chr8_3:62174384-62174403 Msa1300570:intron 15.0%
!! GGAAAATTTATCATAATATT+TGG + chr8_3:62174633-62174652 None:intergenic 15.0%
!! TAAATAACAACAAAATAGAA+TGG + chr8_3:62174824-62174843 None:intergenic 15.0%
!! TAGTATATTGGAATTTAATT+TGG + chr8_3:62174934-62174953 None:intergenic 15.0%
!!! TTTTTCACTTACAAAAGAAT+TGG - chr8_3:62173584-62173603 Msa1300570:intron 20.0%
!!! ATCATTATAAAAGTACTAAC+TGG + chr8_3:62173783-62173802 None:intergenic 20.0%
!! CTTGCATGTATTATATTTAT+AGG - chr8_3:62173956-62173975 Msa1300570:intron 20.0%
!! GTATTATATTTATAGGAGAA+AGG - chr8_3:62173963-62173982 Msa1300570:intron 20.0%
!!! AGAAATACCTTTACTTTTTA+AGG + chr8_3:62174018-62174037 None:intergenic 20.0%
!! ATGAACATTGTAAGAATATA+TGG + chr8_3:62174654-62174673 None:intergenic 20.0%
!!! TAATTATTAGTCTTTCTTTC+AGG - chr8_3:62174685-62174704 Msa1300570:intron 20.0%
!!! AAAACAATTTGAACAAGTTT+TGG - chr8_3:62174771-62174790 Msa1300570:CDS 20.0%
!!! TAGTTGATAATTATGTTGAT+TGG - chr8_3:62174965-62174984 Msa1300570:intron 20.0%
!!! AGTTGATAATTATGTTGATT+GGG - chr8_3:62174966-62174985 Msa1300570:intron 20.0%
!!! TTTTTCACTTACAAAAGAAT+TGG - chr8_3:62173584-62173603 Msa1300570:intron 20.0%
!!! ATCATTATAAAAGTACTAAC+TGG + chr8_3:62173783-62173802 None:intergenic 20.0%
!! CTTGCATGTATTATATTTAT+AGG - chr8_3:62173956-62173975 Msa1300570:intron 20.0%
!! GTATTATATTTATAGGAGAA+AGG - chr8_3:62173963-62173982 Msa1300570:intron 20.0%
!!! AGAAATACCTTTACTTTTTA+AGG + chr8_3:62174018-62174037 None:intergenic 20.0%
!! ATGAACATTGTAAGAATATA+TGG + chr8_3:62174654-62174673 None:intergenic 20.0%
!!! TAATTATTAGTCTTTCTTTC+AGG - chr8_3:62174685-62174704 Msa1300570:intron 20.0%
!!! AAAACAATTTGAACAAGTTT+TGG - chr8_3:62174771-62174790 Msa1300570:CDS 20.0%
!!! TAGTTGATAATTATGTTGAT+TGG - chr8_3:62174965-62174984 Msa1300570:intron 20.0%
!!! AGTTGATAATTATGTTGATT+GGG - chr8_3:62174966-62174985 Msa1300570:intron 20.0%
!!! ACATGCTTAATTTGTTTTGT+AGG - chr8_3:62173424-62173443 Msa1300570:intron 25.0%
! ATCATCATACCTTAAAATTG+GGG + chr8_3:62173458-62173477 None:intergenic 25.0%
! CATCATCATACCTTAAAATT+GGG + chr8_3:62173459-62173478 None:intergenic 25.0%
! TCATCATCATACCTTAAAAT+TGG + chr8_3:62173460-62173479 None:intergenic 25.0%
!! AATCTATATTTAAGACCAGA+GGG + chr8_3:62173535-62173554 None:intergenic 25.0%
!! AAATCTATATTTAAGACCAG+AGG + chr8_3:62173536-62173555 None:intergenic 25.0%
! TCAACAAAATGTAAACCATA+AGG + chr8_3:62173623-62173642 None:intergenic 25.0%
!!! CTTTTTAAGGCTTCAATTAT+TGG + chr8_3:62174005-62174024 None:intergenic 25.0%
! ATTGAAGCCTTAAAAAGTAA+AGG - chr8_3:62174008-62174027 Msa1300570:intron 25.0%
!!! AGTAAAGGTATTTCTACTAT+TGG - chr8_3:62174023-62174042 Msa1300570:intron 25.0%
! AATATTCCAATTGCTATACT+TGG - chr8_3:62174712-62174731 Msa1300570:intron 25.0%
! ATGTATATATGTATGTGTGA+TGG + chr8_3:62174847-62174866 None:intergenic 25.0%
! TACTCAGAATTTCTTGTATA+AGG + chr8_3:62174894-62174913 None:intergenic 25.0%
! ATAATTATCAACTAACGCTA+TGG + chr8_3:62174959-62174978 None:intergenic 25.0%
!!! TTAGTTTTTCTACTTTGTCT+GGG + chr8_3:62175055-62175074 None:intergenic 25.0%
!!! ATTAGTTTTTCTACTTTGTC+TGG + chr8_3:62175056-62175075 None:intergenic 25.0%
!!! ACATGCTTAATTTGTTTTGT+AGG - chr8_3:62173424-62173443 Msa1300570:intron 25.0%
! ATCATCATACCTTAAAATTG+GGG + chr8_3:62173458-62173477 None:intergenic 25.0%
! CATCATCATACCTTAAAATT+GGG + chr8_3:62173459-62173478 None:intergenic 25.0%
! TCATCATCATACCTTAAAAT+TGG + chr8_3:62173460-62173479 None:intergenic 25.0%
!! AATCTATATTTAAGACCAGA+GGG + chr8_3:62173535-62173554 None:intergenic 25.0%
!! AAATCTATATTTAAGACCAG+AGG + chr8_3:62173536-62173555 None:intergenic 25.0%
! TCAACAAAATGTAAACCATA+AGG + chr8_3:62173623-62173642 None:intergenic 25.0%
!!! CTTTTTAAGGCTTCAATTAT+TGG + chr8_3:62174005-62174024 None:intergenic 25.0%
! ATTGAAGCCTTAAAAAGTAA+AGG - chr8_3:62174008-62174027 Msa1300570:intron 25.0%
!!! AGTAAAGGTATTTCTACTAT+TGG - chr8_3:62174023-62174042 Msa1300570:intron 25.0%
! AATATTCCAATTGCTATACT+TGG - chr8_3:62174712-62174731 Msa1300570:intron 25.0%
! ATGTATATATGTATGTGTGA+TGG + chr8_3:62174847-62174866 None:intergenic 25.0%
! TACTCAGAATTTCTTGTATA+AGG + chr8_3:62174894-62174913 None:intergenic 25.0%
! ATAATTATCAACTAACGCTA+TGG + chr8_3:62174959-62174978 None:intergenic 25.0%
!!! TTAGTTTTTCTACTTTGTCT+GGG + chr8_3:62175055-62175074 None:intergenic 25.0%
!!! ATTAGTTTTTCTACTTTGTC+TGG + chr8_3:62175056-62175075 None:intergenic 25.0%
! TTTCCTTCTCATGTATTTTG+CGG - chr8_3:62173310-62173329 Msa1300570:CDS 30.0%
! GATATAAAGCCCCAATTTTA+AGG - chr8_3:62173446-62173465 Msa1300570:intron 30.0%
CATATTGAAAACGTGAGAAT+TGG + chr8_3:62173488-62173507 None:intergenic 30.0%
! GGTTGTTTCAATATTCCTTA+TGG - chr8_3:62173605-62173624 Msa1300570:intron 30.0%
! TTTTGTTGATCTGTTTGTGA+AGG - chr8_3:62173634-62173653 Msa1300570:intron 30.0%
!! TAAAAGTACTAACTGGTTGA+TGG + chr8_3:62173776-62173795 None:intergenic 30.0%
AGGCACAATAACAATAAACA+AGG + chr8_3:62173917-62173936 None:intergenic 30.0%
ATCAAGGAATATGCAAATTG+AGG + chr8_3:62174301-62174320 None:intergenic 30.0%
TTTGCATATTCCTTGATTAG+AGG - chr8_3:62174304-62174323 Msa1300570:CDS 30.0%
!! TCAAATTGTTTTATGACCTC+TGG + chr8_3:62174763-62174782 None:intergenic 30.0%
TCTTAAGTGAGAAATCTTGT+TGG - chr8_3:62175300-62175319 Msa1300570:CDS 30.0%
! TTTCCTTCTCATGTATTTTG+CGG - chr8_3:62173310-62173329 Msa1300570:CDS 30.0%
! GATATAAAGCCCCAATTTTA+AGG - chr8_3:62173446-62173465 Msa1300570:intron 30.0%
CATATTGAAAACGTGAGAAT+TGG + chr8_3:62173488-62173507 None:intergenic 30.0%
! GGTTGTTTCAATATTCCTTA+TGG - chr8_3:62173605-62173624 Msa1300570:intron 30.0%
! TTTTGTTGATCTGTTTGTGA+AGG - chr8_3:62173634-62173653 Msa1300570:intron 30.0%
!! TAAAAGTACTAACTGGTTGA+TGG + chr8_3:62173776-62173795 None:intergenic 30.0%
AGGCACAATAACAATAAACA+AGG + chr8_3:62173917-62173936 None:intergenic 30.0%
ATCAAGGAATATGCAAATTG+AGG + chr8_3:62174301-62174320 None:intergenic 30.0%
TTTGCATATTCCTTGATTAG+AGG - chr8_3:62174304-62174323 Msa1300570:CDS 30.0%
!! TCAAATTGTTTTATGACCTC+TGG + chr8_3:62174763-62174782 None:intergenic 30.0%
TCTTAAGTGAGAAATCTTGT+TGG - chr8_3:62175300-62175319 Msa1300570:CDS 30.0%
! TAGAACAGTACCGAAAATGT+CGG + chr8_3:62173285-62173304 None:intergenic 35.0%
GCAAAATACATGAGAAGGAA+AGG + chr8_3:62173311-62173330 None:intergenic 35.0%
TATAGGTCTGTCAACATTCT+GGG + chr8_3:62173736-62173755 None:intergenic 35.0%
TTGACAGACCTATAGATGTT+TGG - chr8_3:62173742-62173761 Msa1300570:CDS 35.0%
TGACAGACCTATAGATGTTT+GGG - chr8_3:62173743-62173762 Msa1300570:CDS 35.0%
TCTTTCACCCAAACATCTAT+AGG + chr8_3:62173753-62173772 None:intergenic 35.0%
!! ATATGATGGATGTGCTAACA+CGG + chr8_3:62174229-62174248 None:intergenic 35.0%
ACATCCATCATATATCACAG+TGG - chr8_3:62174236-62174255 Msa1300570:intron 35.0%
!! AATTGTTTTATGACCTCTGG+AGG + chr8_3:62174760-62174779 None:intergenic 35.0%
!! AACGCTATGGACTAGTATAT+TGG + chr8_3:62174946-62174965 None:intergenic 35.0%
! ATTATGTTGATTGGGTAGTG+AGG - chr8_3:62174974-62174993 Msa1300570:intron 35.0%
TAAGTTCTTGAGTTCAAACC+TGG - chr8_3:62175029-62175048 Msa1300570:intron 35.0%
!!! ATGTATCGTTTTGTTTGTGC+AGG - chr8_3:62175147-62175166 Msa1300570:intron 35.0%
ATATTTCCTAATGTCTCGCA+TGG - chr8_3:62175187-62175206 Msa1300570:intron 35.0%
! TAGAACAGTACCGAAAATGT+CGG + chr8_3:62173285-62173304 None:intergenic 35.0%
GCAAAATACATGAGAAGGAA+AGG + chr8_3:62173311-62173330 None:intergenic 35.0%
TATAGGTCTGTCAACATTCT+GGG + chr8_3:62173736-62173755 None:intergenic 35.0%
TTGACAGACCTATAGATGTT+TGG - chr8_3:62173742-62173761 Msa1300570:CDS 35.0%
TGACAGACCTATAGATGTTT+GGG - chr8_3:62173743-62173762 Msa1300570:CDS 35.0%
TCTTTCACCCAAACATCTAT+AGG + chr8_3:62173753-62173772 None:intergenic 35.0%
!! ATATGATGGATGTGCTAACA+CGG + chr8_3:62174229-62174248 None:intergenic 35.0%
ACATCCATCATATATCACAG+TGG - chr8_3:62174236-62174255 Msa1300570:intron 35.0%
!! AATTGTTTTATGACCTCTGG+AGG + chr8_3:62174760-62174779 None:intergenic 35.0%
!! AACGCTATGGACTAGTATAT+TGG + chr8_3:62174946-62174965 None:intergenic 35.0%
! ATTATGTTGATTGGGTAGTG+AGG - chr8_3:62174974-62174993 Msa1300570:intron 35.0%
TAAGTTCTTGAGTTCAAACC+TGG - chr8_3:62175029-62175048 Msa1300570:intron 35.0%
!!! ATGTATCGTTTTGTTTGTGC+AGG - chr8_3:62175147-62175166 Msa1300570:intron 35.0%
ATATTTCCTAATGTCTCGCA+TGG - chr8_3:62175187-62175206 Msa1300570:intron 35.0%
ATAGGTCTGTCAACATTCTG+GGG + chr8_3:62173735-62173754 None:intergenic 40.0%
CTATAGGTCTGTCAACATTC+TGG + chr8_3:62173737-62173756 None:intergenic 40.0%
! GTGCCTTCCACATAATTTTC+TGG - chr8_3:62173931-62173950 Msa1300570:intron 40.0%
GTGCCAGAAAATTATGTGGA+AGG + chr8_3:62173937-62173956 None:intergenic 40.0%
GCAAGTGCCAGAAAATTATG+TGG + chr8_3:62173941-62173960 None:intergenic 40.0%
ATTTCTACTATTGGAGCTGC+TGG - chr8_3:62174032-62174051 Msa1300570:intron 40.0%
GTGAGTGTCTTTCACTTGTT+TGG - chr8_3:62174069-62174088 Msa1300570:intron 40.0%
CTAAGACTGTGTGTGAACTT+GGG - chr8_3:62174181-62174200 Msa1300570:intron 40.0%
TCGTCCACTGTGATATATGA+TGG + chr8_3:62174243-62174262 None:intergenic 40.0%
ATTCCTTGATTAGAGGACTC+AGG - chr8_3:62174311-62174330 Msa1300570:CDS 40.0%
TTTCCTGAGTCCTCTAATCA+AGG + chr8_3:62174317-62174336 None:intergenic 40.0%
TCAGCTCCAAGTATAGCAAT+TGG + chr8_3:62174721-62174740 None:intergenic 40.0%
! ATTTTCACATCCTCCACTCT+AGG + chr8_3:62175336-62175355 None:intergenic 40.0%
ATAGGTCTGTCAACATTCTG+GGG + chr8_3:62173735-62173754 None:intergenic 40.0%
CTATAGGTCTGTCAACATTC+TGG + chr8_3:62173737-62173756 None:intergenic 40.0%
! GTGCCTTCCACATAATTTTC+TGG - chr8_3:62173931-62173950 Msa1300570:intron 40.0%
GTGCCAGAAAATTATGTGGA+AGG + chr8_3:62173937-62173956 None:intergenic 40.0%
GCAAGTGCCAGAAAATTATG+TGG + chr8_3:62173941-62173960 None:intergenic 40.0%
ATTTCTACTATTGGAGCTGC+TGG - chr8_3:62174032-62174051 Msa1300570:intron 40.0%
GTGAGTGTCTTTCACTTGTT+TGG - chr8_3:62174069-62174088 Msa1300570:intron 40.0%
CTAAGACTGTGTGTGAACTT+GGG - chr8_3:62174181-62174200 Msa1300570:intron 40.0%
TCGTCCACTGTGATATATGA+TGG + chr8_3:62174243-62174262 None:intergenic 40.0%
ATTCCTTGATTAGAGGACTC+AGG - chr8_3:62174311-62174330 Msa1300570:CDS 40.0%
TTTCCTGAGTCCTCTAATCA+AGG + chr8_3:62174317-62174336 None:intergenic 40.0%
TCAGCTCCAAGTATAGCAAT+TGG + chr8_3:62174721-62174740 None:intergenic 40.0%
! ATTTTCACATCCTCCACTCT+AGG + chr8_3:62175336-62175355 None:intergenic 40.0%
CACCACCAAGTTTAGCAACA+TGG + chr8_3:62173208-62173227 None:intergenic 45.0%
!! GGTGTTGATGCTTATCTCAC+TGG - chr8_3:62173224-62173243 Msa1300570:CDS 45.0%
CCTCCGCAAAATACATGAGA+AGG + chr8_3:62173316-62173335 None:intergenic 45.0%
! CCTTCTCATGTATTTTGCGG+AGG - chr8_3:62173313-62173332 Msa1300570:CDS 45.0%
! CATGTATTTTGCGGAGGTCA+TGG - chr8_3:62173319-62173338 Msa1300570:CDS 45.0%
TTGATACTAAACGCTCCCTC+TGG - chr8_3:62173517-62173536 Msa1300570:intron 45.0%
GTGAAGGATGTTTGCAGACA+AGG - chr8_3:62173650-62173669 Msa1300570:intron 45.0%
TGCAGCAACCGGATATTATG+TGG - chr8_3:62173674-62173693 Msa1300570:intron 45.0%
AGCAACCGGATATTATGTGG+TGG - chr8_3:62173677-62173696 Msa1300570:intron 45.0%
GGGAACCACCACATAATATC+CGG + chr8_3:62173685-62173704 None:intergenic 45.0%
! TCAACATTCTGGGGATCGTA+GGG + chr8_3:62173726-62173745 None:intergenic 45.0%
! TTGGAGCTGCTGGATTTTGT+TGG - chr8_3:62174042-62174061 Msa1300570:intron 45.0%
! TGGAGCTGCTGGATTTTGTT+GGG - chr8_3:62174043-62174062 Msa1300570:intron 45.0%
GCTAAGACTGTGTGTGAACT+TGG - chr8_3:62174180-62174199 Msa1300570:intron 45.0%
ATCACAGTGGACGACATCAA+AGG - chr8_3:62174249-62174268 Msa1300570:intron 45.0%
AGTGGACGACATCAAAGGTA+TGG - chr8_3:62174254-62174273 Msa1300570:intron 45.0%
! TTTTCTACTTTGTCTGGGCC+AGG + chr8_3:62175050-62175069 None:intergenic 45.0%
TAAAGACCCAGAAGCTGTGA+AGG - chr8_3:62175231-62175250 Msa1300570:CDS 45.0%
CACGTCAGATCTTGTTGGAT+TGG - chr8_3:62175266-62175285 Msa1300570:CDS 45.0%
TGGATGAAGAACTCCTAGAG+TGG - chr8_3:62175320-62175339 Msa1300570:CDS 45.0%
ATGAAGAACTCCTAGAGTGG+AGG - chr8_3:62175323-62175342 Msa1300570:CDS 45.0%
CACCACCAAGTTTAGCAACA+TGG + chr8_3:62173208-62173227 None:intergenic 45.0%
!! GGTGTTGATGCTTATCTCAC+TGG - chr8_3:62173224-62173243 Msa1300570:CDS 45.0%
CCTCCGCAAAATACATGAGA+AGG + chr8_3:62173316-62173335 None:intergenic 45.0%
! CCTTCTCATGTATTTTGCGG+AGG - chr8_3:62173313-62173332 Msa1300570:CDS 45.0%
! CATGTATTTTGCGGAGGTCA+TGG - chr8_3:62173319-62173338 Msa1300570:CDS 45.0%
TTGATACTAAACGCTCCCTC+TGG - chr8_3:62173517-62173536 Msa1300570:intron 45.0%
GTGAAGGATGTTTGCAGACA+AGG - chr8_3:62173650-62173669 Msa1300570:intron 45.0%
TGCAGCAACCGGATATTATG+TGG - chr8_3:62173674-62173693 Msa1300570:intron 45.0%
AGCAACCGGATATTATGTGG+TGG - chr8_3:62173677-62173696 Msa1300570:intron 45.0%
GGGAACCACCACATAATATC+CGG + chr8_3:62173685-62173704 None:intergenic 45.0%
! TCAACATTCTGGGGATCGTA+GGG + chr8_3:62173726-62173745 None:intergenic 45.0%
! TTGGAGCTGCTGGATTTTGT+TGG - chr8_3:62174042-62174061 Msa1300570:intron 45.0%
! TGGAGCTGCTGGATTTTGTT+GGG - chr8_3:62174043-62174062 Msa1300570:intron 45.0%
GCTAAGACTGTGTGTGAACT+TGG - chr8_3:62174180-62174199 Msa1300570:intron 45.0%
ATCACAGTGGACGACATCAA+AGG - chr8_3:62174249-62174268 Msa1300570:intron 45.0%
AGTGGACGACATCAAAGGTA+TGG - chr8_3:62174254-62174273 Msa1300570:intron 45.0%
! TTTTCTACTTTGTCTGGGCC+AGG + chr8_3:62175050-62175069 None:intergenic 45.0%
TAAAGACCCAGAAGCTGTGA+AGG - chr8_3:62175231-62175250 Msa1300570:CDS 45.0%
CACGTCAGATCTTGTTGGAT+TGG - chr8_3:62175266-62175285 Msa1300570:CDS 45.0%
TGGATGAAGAACTCCTAGAG+TGG - chr8_3:62175320-62175339 Msa1300570:CDS 45.0%
ATGAAGAACTCCTAGAGTGG+AGG - chr8_3:62175323-62175342 Msa1300570:CDS 45.0%
TGAAGGAGTTCAGAACTGGC+GGG + chr8_3:62173175-62173194 None:intergenic 50.0%
CTGAAGGAGTTCAGAACTGG+CGG + chr8_3:62173176-62173195 None:intergenic 50.0%
CCACTGAAGGAGTTCAGAAC+TGG + chr8_3:62173179-62173198 None:intergenic 50.0%
!! CCAGTTCTGAACTCCTTCAG+TGG - chr8_3:62173176-62173195 Msa1300570:three_prime_UTR 50.0%
GCTGGCCATGTTGCTAAACT+TGG - chr8_3:62173200-62173219 Msa1300570:exon 50.0%
GGCCATGTTGCTAAACTTGG+TGG - chr8_3:62173203-62173222 Msa1300570:exon 50.0%
! AGAATGGCGAAGGTGCAAAG+AGG + chr8_3:62173254-62173273 None:intergenic 50.0%
AATGTCGGAGACGAGGAGAA+TGG + chr8_3:62173270-62173289 None:intergenic 50.0%
! CTCCTCGTCTCCGACATTTT+CGG - chr8_3:62173272-62173291 Msa1300570:CDS 50.0%
TACCGAAAATGTCGGAGACG+AGG + chr8_3:62173277-62173296 None:intergenic 50.0%
GTGGTTCCCGACTTCTTCAA+CGG - chr8_3:62173696-62173715 Msa1300570:intron 50.0%
! GTCAACATTCTGGGGATCGT+AGG + chr8_3:62173727-62173746 None:intergenic 50.0%
! GGAGCTGCTGGATTTTGTTG+GGG - chr8_3:62174044-62174063 Msa1300570:intron 50.0%
! TGACCTCTGGAGGAGTAACT+TGG + chr8_3:62174750-62174769 None:intergenic 50.0%
TTCCTAATGTCTCGCATGGC+TGG - chr8_3:62175191-62175210 Msa1300570:intron 50.0%
TCTCGCATGGCTGGACTATA+AGG - chr8_3:62175200-62175219 Msa1300570:intron 50.0%
CTGAAGCCTTCACAGCTTCT+GGG + chr8_3:62175240-62175259 None:intergenic 50.0%
! TCTGAAGCCTTCACAGCTTC+TGG + chr8_3:62175241-62175260 None:intergenic 50.0%
AGAAGCTGTGAAGGCTTCAG+AGG - chr8_3:62175240-62175259 Msa1300570:CDS 50.0%
TGAAGGAGTTCAGAACTGGC+GGG + chr8_3:62173175-62173194 None:intergenic 50.0%
CTGAAGGAGTTCAGAACTGG+CGG + chr8_3:62173176-62173195 None:intergenic 50.0%
CCACTGAAGGAGTTCAGAAC+TGG + chr8_3:62173179-62173198 None:intergenic 50.0%
!! CCAGTTCTGAACTCCTTCAG+TGG - chr8_3:62173176-62173195 Msa1300570:three_prime_UTR 50.0%
GCTGGCCATGTTGCTAAACT+TGG - chr8_3:62173200-62173219 Msa1300570:exon 50.0%
GGCCATGTTGCTAAACTTGG+TGG - chr8_3:62173203-62173222 Msa1300570:exon 50.0%
! AGAATGGCGAAGGTGCAAAG+AGG + chr8_3:62173254-62173273 None:intergenic 50.0%
AATGTCGGAGACGAGGAGAA+TGG + chr8_3:62173270-62173289 None:intergenic 50.0%
! CTCCTCGTCTCCGACATTTT+CGG - chr8_3:62173272-62173291 Msa1300570:CDS 50.0%
TACCGAAAATGTCGGAGACG+AGG + chr8_3:62173277-62173296 None:intergenic 50.0%
GTGGTTCCCGACTTCTTCAA+CGG - chr8_3:62173696-62173715 Msa1300570:intron 50.0%
! GTCAACATTCTGGGGATCGT+AGG + chr8_3:62173727-62173746 None:intergenic 50.0%
! GGAGCTGCTGGATTTTGTTG+GGG - chr8_3:62174044-62174063 Msa1300570:intron 50.0%
! TGACCTCTGGAGGAGTAACT+TGG + chr8_3:62174750-62174769 None:intergenic 50.0%
TTCCTAATGTCTCGCATGGC+TGG - chr8_3:62175191-62175210 Msa1300570:intron 50.0%
TCTCGCATGGCTGGACTATA+AGG - chr8_3:62175200-62175219 Msa1300570:intron 50.0%
CTGAAGCCTTCACAGCTTCT+GGG + chr8_3:62175240-62175259 None:intergenic 50.0%
! TCTGAAGCCTTCACAGCTTC+TGG + chr8_3:62175241-62175260 None:intergenic 50.0%
AGAAGCTGTGAAGGCTTCAG+AGG - chr8_3:62175240-62175259 Msa1300570:CDS 50.0%
CTGAACTCCTTCAGTGGTGC+TGG - chr8_3:62173182-62173201 Msa1300570:three_prime_UTR 55.0%
AACATGGCCAGCACCACTGA+AGG + chr8_3:62173192-62173211 None:intergenic 55.0%
GCAGACAAGGTTGCAGCAAC+CGG - chr8_3:62173663-62173682 Msa1300570:intron 55.0%
GGATCGCCGTTGAAGAAGTC+GGG + chr8_3:62173705-62173724 None:intergenic 55.0%
GGGATCGCCGTTGAAGAAGT+CGG + chr8_3:62173706-62173725 None:intergenic 55.0%
! GCTGCTGGATTTTGTTGGGG+TGG - chr8_3:62174047-62174066 Msa1300570:intron 55.0%
CACGGCAGCTTGGATGAGTT+TGG + chr8_3:62174211-62174230 None:intergenic 55.0%
GATGTGCTAACACGGCAGCT+TGG + chr8_3:62174221-62174240 None:intergenic 55.0%
CGACCAAGTTACTCCTCCAG+AGG - chr8_3:62174744-62174763 Msa1300570:intron 55.0%
GTCCAGCCATGCGAGACATT+AGG + chr8_3:62175196-62175215 None:intergenic 55.0%
AGCTGTGAAGGCTTCAGAGG+AGG - chr8_3:62175243-62175262 Msa1300570:CDS 55.0%
! GGAGGCACGTCAGATCTTGT+TGG - chr8_3:62175261-62175280 Msa1300570:CDS 55.0%
CTGAACTCCTTCAGTGGTGC+TGG - chr8_3:62173182-62173201 Msa1300570:three_prime_UTR 55.0%
AACATGGCCAGCACCACTGA+AGG + chr8_3:62173192-62173211 None:intergenic 55.0%
GCAGACAAGGTTGCAGCAAC+CGG - chr8_3:62173663-62173682 Msa1300570:intron 55.0%
GGATCGCCGTTGAAGAAGTC+GGG + chr8_3:62173705-62173724 None:intergenic 55.0%
GGGATCGCCGTTGAAGAAGT+CGG + chr8_3:62173706-62173725 None:intergenic 55.0%
! GCTGCTGGATTTTGTTGGGG+TGG - chr8_3:62174047-62174066 Msa1300570:intron 55.0%
CACGGCAGCTTGGATGAGTT+TGG + chr8_3:62174211-62174230 None:intergenic 55.0%
GATGTGCTAACACGGCAGCT+TGG + chr8_3:62174221-62174240 None:intergenic 55.0%
CGACCAAGTTACTCCTCCAG+AGG - chr8_3:62174744-62174763 Msa1300570:intron 55.0%
GTCCAGCCATGCGAGACATT+AGG + chr8_3:62175196-62175215 None:intergenic 55.0%
AGCTGTGAAGGCTTCAGAGG+AGG - chr8_3:62175243-62175262 Msa1300570:CDS 55.0%
! GGAGGCACGTCAGATCTTGT+TGG - chr8_3:62175261-62175280 Msa1300570:CDS 55.0%
GGAGACGAGGAGAATGGCGA+AGG + chr8_3:62173264-62173283 None:intergenic 60.0%
GGAGACGAGGAGAATGGCGA+AGG + chr8_3:62173264-62173283 None:intergenic 60.0%
! GGCGGGTTTGAGCAGCATGC+CGG + chr8_3:62173158-62173177 None:intergenic 65.0%
! GGCGGGTTTGAGCAGCATGC+CGG + chr8_3:62173158-62173177 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 62173146 62175382 62173146 ID=Msa1300570;Name=Msa1300570
chr8_3 mRNA 62173146 62175382 62173146 ID=Msa1300570-mRNA-1;Parent=Msa1300570;Name=Msa1300570-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.8|0.5|1|1|1|6|73|241
chr8_3 exon 62173146 62173359 62173146 ID=Msa1300570-mRNA-1:exon:18491;Parent=Msa1300570-mRNA-1
chr8_3 exon 62173721 62173821 62173721 ID=Msa1300570-mRNA-1:exon:18490;Parent=Msa1300570-mRNA-1
chr8_3 exon 62174258 62174347 62174258 ID=Msa1300570-mRNA-1:exon:18489;Parent=Msa1300570-mRNA-1
chr8_3 exon 62174460 62174550 62174460 ID=Msa1300570-mRNA-1:exon:18488;Parent=Msa1300570-mRNA-1
chr8_3 exon 62174746 62174872 62174746 ID=Msa1300570-mRNA-1:exon:18487;Parent=Msa1300570-mRNA-1
chr8_3 exon 62175207 62175382 62175207 ID=Msa1300570-mRNA-1:exon:18486;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62175207 62175382 62175207 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62174746 62174872 62174746 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62174460 62174550 62174460 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62174258 62174347 62174258 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62173721 62173821 62173721 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 CDS 62173219 62173359 62173219 ID=Msa1300570-mRNA-1:cds;Parent=Msa1300570-mRNA-1
chr8_3 three_prime_UTR 62173146 62173218 62173146 ID=Msa1300570-mRNA-1:three_prime_utr;Parent=Msa1300570-mRNA-1
Gene Sequence

>Msa1300570

ATGTTAGGTCCGGCATGCTGCTCAAACCCGCCAGTTCTGAACTCCTTCAGTGGTGCTGGCCATGTTGCTAAACTTGGTGGTGTTGATGCTTATCTCACTGGTTCTCCTCTTTGCACCTTCGCCATTCTCCTCGTCTCCGACATTTTCGGTACTGTTCTATTGCCTTTCCTTCTCATGATGTTTGCAGACAAGGTTGCAGCAACCGGATATTATGTGGTGGTTCCCGACTTCTTCAACGGCGATCCCTACGATCCCCAGAATGTTGACAGACCTATAGATGTTTGGGTGAAAGACCATCAACCAGAGAAAGGTTTTGAAATTTCACAACCAATAATTGAAGCCTTAAAAAGTAAAGGTATTTCTACTATTGGAGCTGCTGGATTTTGTTGGGGTGCTAAGACTGTGTGTGAACTTGGGAAATCCAAACTCATCCAAGCTGCCGTGTTAGCACATCCATCATATATCACAGTGGACGACATCAAAGGTGTTAATATTCCAATTGCTATACTTGGAGCTGAGAACGACCAAGTTACTCCTCCAGAGGTCATAAAACAATTTGAACAAGTTTTGGCTGCTAAATCTGAAGTTGATAGTTTTGTAAAAATATTTCCTAATGTCTCGCATGGCTGGACTATAAGGTATGACACTAAAGACCCAGAAGCTGTGAAGGCTTCAGAGGAGGCACGTCAGATCTTGTTGGATTGGTTTGATAAACATCTTAAGTGA

Protein sequence

>Msa1300570

MLGPACCSNPPVLNSFSGAGHVAKLGGVDAYLTGSPLCTFAILLVSDIFGTVLLPFLLMMFADKVAATGYYVVVPDFFNGDPYDPQNVDRPIDVWVKDHQPEKGFEISQPIIEALKSKGISTIGAAGFCWGAKTVCELGKSKLIQAAVLAHPSYITVDDIKGVNIPIAILGAENDQVTPPEVIKQFEQVLAAKSEVDSFVKIFPNVSHGWTIRYDTKDPEAVKASEEARQILLDWFDKHLK*