AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0357510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357510 MtrunA17_Chr3g0095791 94.620 316 17 0 1 316 376 691 0.0 614
Msa0357510 MtrunA17_Chr2g0307191 78.797 316 67 0 1 316 377 692 0.0 531
Msa0357510 MtrunA17_Chr2g0298581 75.633 316 77 0 1 316 377 692 0.0 523
Msa0357510 MtrunA17_Chr3g0077511 67.823 317 100 1 2 316 378 694 8.46e-163 469
Msa0357510 MtrunA17_Chr1g0186381 35.647 317 195 5 2 314 400 711 2.44e-68 226
Msa0357510 MtrunA17_Chr4g0046401 35.897 312 199 1 4 314 401 712 2.69e-65 218
Msa0357510 MtrunA17_Chr3g0102531 29.787 329 210 5 7 314 378 706 1.05e-44 162
Msa0357510 MtrunA17_Chr3g0102541 29.934 304 206 3 19 316 409 711 5.30e-43 157
Msa0357510 MtrunA17_Chr3g0102551 29.268 287 198 2 31 312 426 712 1.48e-41 153
Msa0357510 MtrunA17_Chr2g0307221 73.333 75 20 0 88 162 1 75 1.19e-35 124
Msa0357510 MtrunA17_Chr8g0364641 29.773 309 201 6 16 315 639 940 6.90e-35 134
Msa0357510 MtrunA17_Chr3g0088821 28.146 302 209 5 17 314 739 1036 1.31e-33 130
Msa0357510 MtrunA17_Chr8g0352231 27.393 303 212 4 17 315 739 1037 1.59e-33 130
Msa0357510 MtrunA17_Chr2g0322331 29.299 314 210 9 2 308 40 348 2.38e-33 126
Msa0357510 MtrunA17_Chr8g0383701 28.378 296 203 5 24 315 765 1055 4.09e-33 129
Msa0357510 MtrunA17_Chr4g0073711 28.378 296 202 4 25 315 707 997 7.32e-33 128
Msa0357510 MtrunA17_Chr2g0296991 26.403 303 214 4 17 315 706 1003 9.84e-33 128
Msa0357510 MtrunA17_Chr7g0267731 26.733 303 214 5 17 315 647 945 3.08e-32 126
Msa0357510 MtrunA17_Chr8g0379241 27.393 303 210 4 17 314 650 947 1.07e-30 122
Msa0357510 MtrunA17_Chr2g0284211 26.316 304 214 4 16 314 637 935 1.79e-29 118
Msa0357510 MtrunA17_Chr3g0137951 27.243 301 203 6 23 315 753 1045 5.58e-29 117
Msa0357510 MtrunA17_Chr1g0183381 25.828 302 214 5 17 314 567 862 2.55e-28 115
Msa0357510 MtrunA17_Chr3g0078671 24.917 301 209 5 25 315 715 1008 2.37e-27 112
Msa0357510 MtrunA17_Chr1g0201731 27.907 301 208 4 19 315 761 1056 2.96e-27 112
Msa0357510 MtrunA17_Chr2g0322351 26.460 291 196 9 24 308 426 704 1.12e-26 110
Msa0357510 MtrunA17_Chr2g0297351 27.869 305 188 9 27 315 698 986 5.25e-25 105
Msa0357510 MtrunA17_Chr2g0322361 25.402 311 225 5 8 313 414 722 8.55e-25 104
Msa0357510 MtrunA17_Chr2g0322371 24.595 309 224 6 11 313 407 712 2.18e-24 103
Msa0357510 MtrunA17_Chr4g0025201 23.248 314 229 7 8 313 406 715 2.06e-21 94.7
Msa0357510 MtrunA17_Chr1g0165421 25.325 308 224 4 11 315 789 1093 2.11e-20 92.0
Msa0357510 MtrunA17_Chr5g0410641 23.311 296 221 5 23 315 791 1083 2.06e-19 89.0
Msa0357510 MtrunA17_Chr4g0039801 26.059 307 197 7 24 315 813 1104 2.50e-18 85.9
Msa0357510 MtrunA17_Chr1g0165411 24.746 295 216 4 24 315 774 1065 2.69e-18 85.9
Msa0357510 MtrunA17_Chr7g0269741 23.920 301 214 5 23 315 839 1132 3.88e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0357510 AT4G24010.1 36.271 295 183 4 24 316 415 706 6.88e-59 201
Msa0357510 AT4G24000.2 32.292 288 191 3 24 309 213 498 7.06e-56 189
Msa0357510 AT4G24000.1 32.292 288 191 3 24 309 405 690 2.09e-54 189
Msa0357510 AT4G23990.2 31.667 300 201 3 12 309 208 505 5.34e-51 177
Msa0357510 AT4G23990.1 32.986 288 189 3 24 309 434 719 1.44e-49 176
Msa0357510 AT1G55850.1 29.861 288 199 2 30 314 417 704 6.02e-43 157
Msa0357510 AT5G17420.1 30.693 303 200 5 18 315 688 985 4.49e-38 144
Msa0357510 AT5G05170.1 27.213 305 206 6 18 314 727 1023 2.51e-32 127
Msa0357510 AT4G18780.1 27.900 319 218 5 1 314 630 941 4.58e-32 126
Msa0357510 AT5G09870.1 26.537 309 206 6 17 315 731 1028 9.94e-32 125
Msa0357510 AT4G32410.1 27.907 301 201 6 23 315 747 1039 1.15e-31 125
Msa0357510 AT5G64740.1 25.890 309 208 6 17 315 746 1043 2.62e-30 121
Msa0357510 AT2G21770.1 25.649 308 208 6 18 315 750 1046 5.00e-30 120
Msa0357510 AT5G44030.3 28.041 296 204 7 24 314 437 728 5.50e-30 120
Msa0357510 AT5G44030.2 27.946 297 205 7 24 315 745 1037 9.50e-30 120
Msa0357510 AT5G44030.1 27.946 297 205 7 24 315 716 1008 1.18e-29 119
Msa0357510 AT4G39350.1 26.948 308 206 5 17 315 745 1042 1.25e-29 119
Msa0357510 AT2G25540.1 25.914 301 207 6 23 315 727 1019 3.20e-29 118
Msa0357510 AT3G03050.1 23.183 289 216 4 27 312 819 1104 1.41e-23 101
Msa0357510 AT2G32530.1 27.551 294 185 8 3 277 413 697 1.03e-22 99.0
Msa0357510 AT2G33100.2 25.424 295 214 5 24 315 709 1000 1.61e-21 95.9
Msa0357510 AT2G33100.1 25.424 295 214 5 24 315 709 1000 1.61e-21 95.9
Msa0357510 AT4G38190.1 24.399 291 214 4 27 314 780 1067 3.36e-21 94.7
Msa0357510 AT2G32540.1 25.094 267 180 6 25 275 430 692 3.04e-20 91.7
Msa0357510 AT5G16910.1 22.712 295 222 4 24 315 816 1107 5.19e-19 88.2
Msa0357510 AT2G32610.1 26.316 304 180 9 4 277 408 697 2.35e-18 86.3
Msa0357510 AT1G32180.1 24.104 307 229 3 11 314 638 943 2.82e-18 85.9
Msa0357510 AT1G32180.2 24.104 307 229 3 11 314 638 943 2.82e-18 85.9
Msa0357510 AT4G15290.1 26.148 283 187 8 12 278 417 693 1.01e-17 84.3
Msa0357510 AT1G02730.1 22.924 301 217 5 23 315 851 1144 1.69e-17 84.0
Msa0357510 AT2G32620.1 25.828 302 178 11 3 277 413 695 1.83e-16 80.5
Msa0357510 AT2G32620.4 25.828 302 178 11 3 277 317 599 1.92e-16 80.5
Msa0357510 AT4G15320.4 24.648 284 191 7 12 278 432 709 7.49e-16 78.6
Msa0357510 AT4G15320.5 24.648 284 191 7 12 278 417 694 7.63e-16 78.6
Msa0357510 AT4G15320.3 24.648 284 191 7 12 278 417 694 8.08e-16 78.6
Msa0357510 AT2G32620.3 27.811 169 97 4 3 161 413 566 2.58e-13 70.9
Msa0357510 AT4G15320.2 27.333 150 107 2 12 161 463 610 4.39e-13 70.5
Msa0357510 AT4G15320.1 27.333 150 107 2 12 161 506 653 4.55e-13 70.5
Msa0357510 AT2G32620.2 29.787 141 90 3 3 143 413 544 2.94e-11 64.7

Find 65 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAACATTGTTTGCTTCTT+TGG 0.132316 3_1:+40777697 Msa0357510:CDS
TTTGCTTCTTTGGTGGTTTA+TGG 0.157159 3_1:+40777707 Msa0357510:CDS
TTGTTCATCCCACCAAATTC+TGG 0.226805 3_1:-40777476 None:intergenic
CCAGTTTGTGTTACTTTCAT+AGG 0.261272 3_1:-40772279 None:intergenic
CTTATAATCCCCTCAATAAT+AGG 0.283744 3_1:-40777808 None:intergenic
ACTATTGCCTACACACTATA+TGG 0.309599 3_1:+40776529 Msa0357510:CDS
AAAGGTTAGACAATGAATAA+TGG 0.332845 3_1:-40776479 None:intergenic
GTGTGTAGGCAATAGTATAT+TGG 0.358637 3_1:-40776522 None:intergenic
AAACTTGAGAGTACCGTTAC+TGG 0.362985 3_1:+40776274 Msa0357510:CDS
AATATAGCCCATTCACTTAC+GGG 0.364012 3_1:+40776443 Msa0357510:CDS
GTGGTGGCTCCTCCAGAATT+TGG 0.369642 3_1:+40777464 Msa0357510:CDS
TGAAGGTGCAACATTGTTCA+TGG 0.370739 3_1:+40777651 Msa0357510:CDS
AAGGTTAGACAATGAATAAT+GGG 0.392893 3_1:-40776478 None:intergenic
AGTTTGATTGTAAAATCAAT+TGG 0.395815 3_1:+40777502 Msa0357510:CDS
CCTATGAAAGTAACACAAAC+TGG 0.407291 3_1:+40772279 Msa0357510:CDS
TGTGTAGGCAATAGTATATT+GGG 0.407784 3_1:-40776521 None:intergenic
AAATATAGCCCATTCACTTA+CGG 0.428766 3_1:+40776442 Msa0357510:CDS
TCTAAGTTATCCTATTATTG+AGG 0.444182 3_1:+40777798 Msa0357510:CDS
CCTCAGATTTGCTTCTTGAA+AGG 0.449878 3_1:+40776559 Msa0357510:CDS
ATTATGAGCAACACAATCAA+TGG 0.451362 3_1:-40777676 None:intergenic
ACATCTGAACTTCTCTTGCT+TGG 0.451840 3_1:+40776412 Msa0357510:CDS
ACCTCCATCCTCTGCAATGA+AGG 0.452138 3_1:-40776303 None:intergenic
AACATTGTTTGCTTCTTTGG+TGG 0.455728 3_1:+40777700 Msa0357510:CDS
CTAAGTTATCCTATTATTGA+GGG 0.461749 3_1:+40777799 Msa0357510:CDS
CTTGAAATCCCGTAAGTGAA+TGG 0.463902 3_1:-40776451 None:intergenic
TTGAAATCCCGTAAGTGAAT+GGG 0.480525 3_1:-40776450 None:intergenic
TAAGTATGAAACGCAAGGTT+GGG 0.483268 3_1:+40777827 Msa0357510:CDS
TAAGGTAAAGCAATATGAGC+AGG 0.488142 3_1:+40777615 Msa0357510:CDS
ACCTCCTTCATTGCAGAGGA+TGG 0.492040 3_1:+40776299 Msa0357510:CDS
GATTGCTTCAGTTGGTAAAG+TGG 0.503160 3_1:+40776389 Msa0357510:CDS
AATATAATGTTGAATTTGAG+TGG 0.511523 3_1:-40777428 None:intergenic
AGGAATTTCTGTATTTCCAA+AGG 0.511930 3_1:+40776579 Msa0357510:CDS
CAAAGCAGTTGACAAAGATA+AGG 0.514880 3_1:+40777597 Msa0357510:CDS
TCAAATTCAACATTATATTG+AGG 0.524787 3_1:+40777432 Msa0357510:CDS
TGTGGTTGTGAAGTAGCAAA+AGG 0.531218 3_1:-40776497 None:intergenic
AAAATGGTTTGGGTTGAACA+AGG 0.531329 3_1:+40777555 Msa0357510:CDS
GGCAATAGTATATTGGGTTG+TGG 0.531752 3_1:-40776515 None:intergenic
GTGGCTCCTCCAGAATTTGG+TGG 0.535117 3_1:+40777467 Msa0357510:CDS
CAATCCCTCTTTCATGTCAG+TGG 0.552279 3_1:-40776371 None:intergenic
TGTTACAGGTTACAGAACCT+TGG 0.553078 3_1:+40777377 Msa0357510:intron
ATAAGTATGAAACGCAAGGT+TGG 0.556954 3_1:+40777826 Msa0357510:CDS
AAATGGTTTGGGTTGAACAA+GGG 0.557787 3_1:+40777556 Msa0357510:CDS
ATTGAGGTAATTTCAAGTGG+TGG 0.566111 3_1:+40777448 Msa0357510:CDS
TGCACCCACTGACATGAAAG+AGG 0.566701 3_1:+40776366 Msa0357510:CDS
TATATTGAGGTAATTTCAAG+TGG 0.585743 3_1:+40777445 Msa0357510:CDS
ATGGAGACTACTCAATGTGA+AGG 0.587324 3_1:+40777726 Msa0357510:CDS
TAAGTTATCCTATTATTGAG+GGG 0.588766 3_1:+40777800 Msa0357510:CDS
TGGCTCCTCCAGAATTTGGT+GGG 0.594327 3_1:+40777468 Msa0357510:CDS
GAAAGAGGGATTGCTTCAGT+TGG 0.598558 3_1:+40776381 Msa0357510:CDS
TTCATCCCACCAAATTCTGG+AGG 0.600177 3_1:-40777473 None:intergenic
AATCCCTCTTTCATGTCAGT+GGG 0.600324 3_1:-40776370 None:intergenic
AATGATTCCATATAGTGTGT+AGG 0.600717 3_1:-40776536 None:intergenic
GGCTACCTCCTTCATTGCAG+AGG 0.605797 3_1:+40776295 Msa0357510:CDS
TTTACAAGAAGCGAGTGTAG+TGG 0.619981 3_1:+40772247 Msa0357510:CDS
ATGAAGGAGGTAGCCAGTAA+CGG 0.622292 3_1:-40776287 None:intergenic
CCTTTCAAGAAGCAAATCTG+AGG 0.627942 3_1:-40776559 None:intergenic
AAGGTAAAGCAATATGAGCA+GGG 0.632419 3_1:+40777616 Msa0357510:CDS
TCCATCCTCTGCAATGAAGG+AGG 0.634394 3_1:-40776300 None:intergenic
GATTATAAGTATGAAACGCA+AGG 0.635785 3_1:+40777822 Msa0357510:CDS
GAGTCACTGAAAGCAATATG+TGG 0.636647 3_1:+40772185 Msa0357510:CDS
TCCTTCATTGCAGAGGATGG+AGG 0.645824 3_1:+40776302 Msa0357510:CDS
GCACCCACTGACATGAAAGA+GGG 0.658795 3_1:+40776367 Msa0357510:CDS
ACTGTAAACACTATAAACCA+AGG 0.661029 3_1:-40777394 None:intergenic
GGTGCACATCCTAAGAAACA+TGG 0.692331 3_1:-40776349 None:intergenic
TAACACAAACTGGAGTACTG+AGG 0.700667 3_1:+40772289 Msa0357510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATATTTTAGTTTTTGA+TGG + chr3_1:40772386-40772405 Msa0357510:intron 10.0%
!!! TATTGTTTTTTAAAATTGAA+AGG - chr3_1:40772700-40772719 None:intergenic 10.0%
!!! TTTCTCTAAAAAATAAAATA+AGG + chr3_1:40773179-40773198 Msa0357510:intron 10.0%
!!! ATGTTTTCAAATTAAAAAAT+AGG + chr3_1:40773288-40773307 Msa0357510:intron 10.0%
!!! TGTTTTCAAATTAAAAAATA+GGG + chr3_1:40773289-40773308 Msa0357510:intron 10.0%
!! AGTACATATTTAATTATTAA+GGG - chr3_1:40773641-40773660 None:intergenic 10.0%
!! TAGTACATATTTAATTATTA+AGG - chr3_1:40773642-40773661 None:intergenic 10.0%
!! CTTTATAATTTAAATATCAA+TGG + chr3_1:40773746-40773765 Msa0357510:intron 10.0%
!!! TTGTTTCATATTTTATAATA+GGG + chr3_1:40773879-40773898 Msa0357510:intron 10.0%
!! TTACAAAAAAAATAAGATAA+AGG - chr3_1:40774912-40774931 None:intergenic 10.0%
!!! TTATTTTTTTTGTAACAATT+TGG + chr3_1:40774917-40774936 Msa0357510:intron 10.0%
!! TAATAAAAAAAATGAGAAAA+AGG + chr3_1:40775696-40775715 Msa0357510:intron 10.0%
!!! CTATAAAAAAAAACAATTTT+AGG - chr3_1:40775867-40775886 None:intergenic 10.0%
!!! TTTAGAATGTATTTTTTATT+TGG - chr3_1:40776006-40776025 None:intergenic 10.0%
!! TAAAAAATACATTCTAAATA+TGG + chr3_1:40776008-40776027 Msa0357510:intron 10.0%
!! AAAAAATACATTCTAAATAT+GGG + chr3_1:40776009-40776028 Msa0357510:intron 10.0%
!!! ATAAAAAACTATTTTTGTAT+AGG + chr3_1:40776675-40776694 Msa0357510:intron 10.0%
!! TAAATTAATATACTTAATCA+AGG - chr3_1:40777353-40777372 None:intergenic 10.0%
!! TATTAATTTATTTATGTTAC+AGG + chr3_1:40777363-40777382 Msa0357510:intron 10.0%
!!! ATTTGAAGATCTTTTTATAA+AGG - chr3_1:40772443-40772462 None:intergenic 15.0%
!! TTATAAAAAGATCTTCAAAT+TGG + chr3_1:40772443-40772462 Msa0357510:intron 15.0%
!!! ATGTTTTTTTGTATGTTTTA+CGG + chr3_1:40772800-40772819 Msa0357510:intron 15.0%
!!! TTATTTGAATAACCATTTTA+TGG + chr3_1:40772881-40772900 Msa0357510:intron 15.0%
!!! TATTTGAATAACCATTTTAT+GGG + chr3_1:40772882-40772901 Msa0357510:intron 15.0%
!!! ATCTGAAATTTTTAAAATTG+AGG + chr3_1:40773261-40773280 Msa0357510:intron 15.0%
!! AAAAGTTAATCTTAATCATA+AGG + chr3_1:40773478-40773497 Msa0357510:intron 15.0%
!!! ATGTATATTTTAACATAAGA+GGG - chr3_1:40773553-40773572 None:intergenic 15.0%
!!! AATGTATATTTTAACATAAG+AGG - chr3_1:40773554-40773573 None:intergenic 15.0%
!!! GTGTAGATTTTATTTTTAAA+GGG - chr3_1:40773582-40773601 None:intergenic 15.0%
!!! AGTGTAGATTTTATTTTTAA+AGG - chr3_1:40773583-40773602 None:intergenic 15.0%
!! TATTTAATTATTAAGGGAAA+GGG - chr3_1:40773635-40773654 None:intergenic 15.0%
!! ATATTTAATTATTAAGGGAA+AGG - chr3_1:40773636-40773655 None:intergenic 15.0%
!!! ATGAATCTATTTTTCTTAAA+TGG - chr3_1:40773724-40773743 None:intergenic 15.0%
!! TTACTAAATACAGTAAAATA+TGG - chr3_1:40773837-40773856 None:intergenic 15.0%
!!! GTTGTTTCATATTTTATAAT+AGG + chr3_1:40773878-40773897 Msa0357510:intron 15.0%
!!! ACTTAAAAAAAAAAGTATTG+CGG - chr3_1:40773986-40774005 None:intergenic 15.0%
!! ACAAAATTGAACAATAAAAA+TGG + chr3_1:40774731-40774750 Msa0357510:intron 15.0%
!! CAAAATTGAACAATAAAAAT+GGG + chr3_1:40774732-40774751 Msa0357510:intron 15.0%
!! TAACATTAATTCATGATATT+TGG + chr3_1:40775520-40775539 Msa0357510:intron 15.0%
!!! CTTATTTATTTGTAACATTT+TGG - chr3_1:40775782-40775801 None:intergenic 15.0%
!! AATCAAAATGTAATATACAT+TGG - chr3_1:40775925-40775944 None:intergenic 15.0%
!!! AATGTATATTACATTTTGAT+TGG + chr3_1:40775924-40775943 Msa0357510:intron 15.0%
!! ATATCAATCAAGTTAATAAT+GGG - chr3_1:40776227-40776246 None:intergenic 15.0%
!!! ACTTTGATGATAATAAATAG+AGG + chr3_1:40772854-40772873 Msa0357510:intron 20.0%
!! ACTAACAAGAGAAAATAAAA+AGG + chr3_1:40773329-40773348 Msa0357510:intron 20.0%
!!! TATGCATATTACATTTTGAT+TGG - chr3_1:40773411-40773430 None:intergenic 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr3_1:40773552-40773571 None:intergenic 20.0%
!!! AATCTATTTTTCTTAAATGG+TGG - chr3_1:40773721-40773740 None:intergenic 20.0%
!!! CTTAAAAAAAAAAGTATTGC+GGG - chr3_1:40773985-40774004 None:intergenic 20.0%
!! TAAAGAAGAAATTTGAATGA+AGG - chr3_1:40774191-40774210 None:intergenic 20.0%
!! CAAAATTGAACAATCAAAAT+GGG - chr3_1:40774256-40774275 None:intergenic 20.0%
!! ACAAAATTGAACAATCAAAA+TGG - chr3_1:40774257-40774276 None:intergenic 20.0%
!!! ATCGTGACTTTTTTTTATTT+AGG + chr3_1:40774343-40774362 Msa0357510:intron 20.0%
!!! CTTTTTGATTTGATTTTTCT+TGG - chr3_1:40774592-40774611 None:intergenic 20.0%
!! TGAACACCTAAATATAATTA+AGG + chr3_1:40774868-40774887 Msa0357510:intron 20.0%
!! ATCTTGCCTTAATTATATTT+AGG - chr3_1:40774877-40774896 None:intergenic 20.0%
!!! ATCTTTATTTTTTCTCGTTT+AGG + chr3_1:40774946-40774965 Msa0357510:intron 20.0%
!! TAACATTAATTCACGATATT+TGG - chr3_1:40775176-40775195 None:intergenic 20.0%
!! TTGCAACATTTATGAAATTA+AGG - chr3_1:40775238-40775257 None:intergenic 20.0%
!! TTAATTTCATAAATGTTGCA+AGG + chr3_1:40775237-40775256 Msa0357510:intron 20.0%
!!! AAACTAAATCTCTTTTCTAT+AGG + chr3_1:40775457-40775476 Msa0357510:intron 20.0%
!!! AACTAAATCTCTTTTCTATA+GGG + chr3_1:40775458-40775477 Msa0357510:intron 20.0%
!!! ATCTTTATTTTTTTCCGTTT+AGG - chr3_1:40775753-40775772 None:intergenic 20.0%
!! ACGGAAAAAAATAAAGATAA+AGG + chr3_1:40775755-40775774 Msa0357510:intron 20.0%
!! TATAGACAAGATTACATTAT+AGG - chr3_1:40775813-40775832 None:intergenic 20.0%
!! ATTCTAAATATGGGTAATTA+AGG + chr3_1:40776018-40776037 Msa0357510:intron 20.0%
!! GATATCAATCAAGTTAATAA+TGG - chr3_1:40776228-40776247 None:intergenic 20.0%
!! CATGAAAAATATTAGTTGAT+AGG - chr3_1:40776799-40776818 None:intergenic 20.0%
!! TGCAAAATGACATAAAAAAA+TGG - chr3_1:40777309-40777328 None:intergenic 20.0%
!! AATATAATGTTGAATTTGAG+TGG - chr3_1:40777431-40777450 None:intergenic 20.0%
!! TCAAATTCAACATTATATTG+AGG + chr3_1:40777432-40777451 Msa0357510:CDS 20.0%
!! AGTTTGATTGTAAAATCAAT+TGG + chr3_1:40777502-40777521 Msa0357510:CDS 20.0%
!!! AAGGATTTTAATGAAATGTT+TGG + chr3_1:40777745-40777764 Msa0357510:CDS 20.0%
! AAAAGTTGAAATTGTAGCAA+TGG - chr3_1:40772353-40772372 None:intergenic 25.0%
! ATTTGAATTCACACCTTATA+AGG - chr3_1:40772612-40772631 None:intergenic 25.0%
!! TTTTTGAATTATGAGATGAG+AGG - chr3_1:40772672-40772691 None:intergenic 25.0%
!!! AGTATTGTTTTGAAAAGAAC+TGG - chr3_1:40772837-40772856 None:intergenic 25.0%
! CTACATTTCTTTGTATATCT+TGG - chr3_1:40772912-40772931 None:intergenic 25.0%
! CAAGATATACAAAGAAATGT+AGG + chr3_1:40772910-40772929 Msa0357510:intron 25.0%
!!! TTATTTTTAGCAATGTACTG+TGG - chr3_1:40773214-40773233 None:intergenic 25.0%
! ATAAGTCCTAAATTCTGTAA+TGG + chr3_1:40773230-40773249 Msa0357510:intron 25.0%
!! TTTTCTCCATTACAGAATTT+AGG - chr3_1:40773239-40773258 None:intergenic 25.0%
! TGTAATTCAAGCATCTTATA+GGG - chr3_1:40773611-40773630 None:intergenic 25.0%
! TTGTAATTCAAGCATCTTAT+AGG - chr3_1:40773612-40773631 None:intergenic 25.0%
! TACATCAAATTTCTTTCATC+TGG + chr3_1:40774089-40774108 Msa0357510:intron 25.0%
! GAATGTAAGTGATGAATTTA+AGG - chr3_1:40774119-40774138 None:intergenic 25.0%
! GAAACAAGAATTGATCAATA+GGG - chr3_1:40774219-40774238 None:intergenic 25.0%
! TGAAACAAGAATTGATCAAT+AGG - chr3_1:40774220-40774239 None:intergenic 25.0%
!! GTTAGCATATTTTATTAGGT+TGG - chr3_1:40774372-40774391 None:intergenic 25.0%
! AAGTCATCTGTTATACTTTA+AGG - chr3_1:40774539-40774558 None:intergenic 25.0%
! GAATGTAACCGATAAATTTA+AGG + chr3_1:40774770-40774789 Msa0357510:intron 25.0%
! CTGAATGTCCTTAAATTTAT+CGG - chr3_1:40774781-40774800 None:intergenic 25.0%
! AATTAAGGCAAGATTACATT+AGG + chr3_1:40774883-40774902 Msa0357510:intron 25.0%
! ATTAAGGCAAGATTACATTA+GGG + chr3_1:40774884-40774903 Msa0357510:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG - chr3_1:40775491-40775510 None:intergenic 25.0%
! TACAAAAGTTAAGATTGTTC+TGG + chr3_1:40775301-40775320 Msa0357510:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG + chr3_1:40775491-40775510 Msa0357510:intron 25.0%
!!! TGGTATTTTTGGATAAAGAT+AGG - chr3_1:40776332-40776351 None:intergenic 25.0%
! AAGGTTAGACAATGAATAAT+GGG - chr3_1:40776481-40776500 None:intergenic 25.0%
! AAAGGTTAGACAATGAATAA+TGG - chr3_1:40776482-40776501 None:intergenic 25.0%
! TTAATCGTAGTAATTACCTT+TGG - chr3_1:40776598-40776617 None:intergenic 25.0%
! TATACATAAACACTTATGCA+AGG - chr3_1:40776628-40776647 None:intergenic 25.0%
! TTGCATAAGTGTTTATGTAT+AGG + chr3_1:40776627-40776646 Msa0357510:intron 25.0%
! ATCAACTATAGTTAGTTGAT+AGG + chr3_1:40776746-40776765 Msa0357510:intron 25.0%
! TATATTGAGGTAATTTCAAG+TGG + chr3_1:40777445-40777464 Msa0357510:CDS 25.0%
! TTATAGAAGCAGCAAAAAAA+TGG + chr3_1:40777539-40777558 Msa0357510:CDS 25.0%
! ATAAACATTGTTTGCTTCTT+TGG + chr3_1:40777697-40777716 Msa0357510:CDS 25.0%
! TCTAAGTTATCCTATTATTG+AGG + chr3_1:40777798-40777817 Msa0357510:CDS 25.0%
! CTAAGTTATCCTATTATTGA+GGG + chr3_1:40777799-40777818 Msa0357510:CDS 25.0%
! TAAGTTATCCTATTATTGAG+GGG + chr3_1:40777800-40777819 Msa0357510:CDS 25.0%
!!! TGAGAGGATAATCTTATTTT+TGG + chr3_1:40777937-40777956 Msa0357510:three_prime_UTR 25.0%
TTTAATCAGTCAATGAACGT+TGG - chr3_1:40772522-40772541 None:intergenic 30.0%
CCATTCAAACAAACTTTCAT+TGG - chr3_1:40772572-40772591 None:intergenic 30.0%
! CCAATGAAAGTTTGTTTGAA+TGG + chr3_1:40772569-40772588 Msa0357510:intron 30.0%
GATGTCAATCATACCTTATA+AGG + chr3_1:40772596-40772615 Msa0357510:intron 30.0%
ATCTTGGTTATCCCATAAAA+TGG - chr3_1:40772896-40772915 None:intergenic 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr3_1:40773548-40773567 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr3_1:40773549-40773568 None:intergenic 30.0%
! GCGTGTTAGCATATTTTATT+AGG - chr3_1:40774376-40774395 None:intergenic 30.0%
TTGTTTGGACTTAAAAGCTT+TGG - chr3_1:40774420-40774439 None:intergenic 30.0%
!!! GAGTTTGCTAGCATTTTTTT+CGG - chr3_1:40774482-40774501 None:intergenic 30.0%
! TTGATTTTTCTTGGTTGTGA+GGG - chr3_1:40774583-40774602 None:intergenic 30.0%
!! TTTGATTTTTCTTGGTTGTG+AGG - chr3_1:40774584-40774603 None:intergenic 30.0%
CTCACGAAAATTGAAAAATG+CGG + chr3_1:40774696-40774715 Msa0357510:intron 30.0%
TTAAGGCAAGATTACATTAG+GGG + chr3_1:40774885-40774904 Msa0357510:intron 30.0%
!! TGTGCTTTTAAGAGAGATAA+AGG - chr3_1:40774973-40774992 None:intergenic 30.0%
GAACATCTTCATCATATTTC+TGG - chr3_1:40775616-40775635 None:intergenic 30.0%
AGAAGATGATGAAGATTCAA+AGG - chr3_1:40775120-40775139 None:intergenic 30.0%
ATTTCATAAATGTTGCAAGG+CGG + chr3_1:40775240-40775259 Msa0357510:intron 30.0%
TCTAACTCAATATTCCAACA+CGG - chr3_1:40775380-40775399 None:intergenic 30.0%
GAACATCTTCATCATATTTC+TGG + chr3_1:40775616-40775635 Msa0357510:intron 30.0%
TGAGAGATAAAAGACCTAAA+CGG + chr3_1:40775736-40775755 Msa0357510:intron 30.0%
AAATACCCTCTAAACAAGAT+AGG + chr3_1:40775965-40775984 Msa0357510:intron 30.0%
AATACCCTCTAAACAAGATA+GGG + chr3_1:40775966-40775985 Msa0357510:intron 30.0%
! ATTACCCTATCTTGTTTAGA+GGG - chr3_1:40775973-40775992 None:intergenic 30.0%
AATATGGGTAATTAAGGATC+AGG + chr3_1:40776024-40776043 Msa0357510:intron 30.0%
! TTAACTTGATTGATATCCAC+AGG + chr3_1:40776231-40776250 Msa0357510:intron 30.0%
! CCTAAGAAACATGGTATTTT+TGG - chr3_1:40776343-40776362 None:intergenic 30.0%
CCAAAAATACCATGTTTCTT+AGG + chr3_1:40776340-40776359 Msa0357510:CDS 30.0%
AAATATAGCCCATTCACTTA+CGG + chr3_1:40776442-40776461 Msa0357510:CDS 30.0%
TGTGTAGGCAATAGTATATT+GGG - chr3_1:40776524-40776543 None:intergenic 30.0%
AATGATTCCATATAGTGTGT+AGG - chr3_1:40776539-40776558 None:intergenic 30.0%
AGGAATTTCTGTATTTCCAA+AGG + chr3_1:40776579-40776598 Msa0357510:CDS 30.0%
!! TTTTAGAGATGCAACTCAAA+AGG - chr3_1:40776868-40776887 None:intergenic 30.0%
GAAACAACTTATGTTACAAG+TGG + chr3_1:40777188-40777207 Msa0357510:intron 30.0%
ACTGTAAACACTATAAACCA+AGG - chr3_1:40777397-40777416 None:intergenic 30.0%
AAGCAGCAAAAAAATGGTTT+GGG + chr3_1:40777545-40777564 Msa0357510:CDS 30.0%
!! CAGGGTAAGTTTAATTTTGA+AGG + chr3_1:40777634-40777653 Msa0357510:CDS 30.0%
ATTATGAGCAACACAATCAA+TGG - chr3_1:40777679-40777698 None:intergenic 30.0%
CTTATAATCCCCTCAATAAT+AGG - chr3_1:40777811-40777830 None:intergenic 30.0%
GATTATAAGTATGAAACGCA+AGG + chr3_1:40777822-40777841 Msa0357510:CDS 30.0%
! TAAGCTTAGATGATTTTGAG+AGG + chr3_1:40777921-40777940 Msa0357510:three_prime_UTR 30.0%
!! CCAGTTTGTGTTACTTTCAT+AGG - chr3_1:40772282-40772301 None:intergenic 35.0%
CCTATGAAAGTAACACAAAC+TGG + chr3_1:40772279-40772298 Msa0357510:CDS 35.0%
! AGATGAGAGGTATGATTGAA+AGG - chr3_1:40772659-40772678 None:intergenic 35.0%
!! TGATTGGTTGATAACAAGAG+AGG - chr3_1:40773395-40773414 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr3_1:40773547-40773566 None:intergenic 35.0%
!! ATGTTTTTGTTCTCACGTTC+GGG - chr3_1:40774166-40774185 None:intergenic 35.0%
!! GATGTTTTTGTTCTCACGTT+CGG - chr3_1:40774167-40774186 None:intergenic 35.0%
! AATTTGAAACTGCAGCAGTT+TGG - chr3_1:40774284-40774303 None:intergenic 35.0%
! GAGGCTTTTGTTCTTTTGTT+TGG - chr3_1:40774435-40774454 None:intergenic 35.0%
! ATACTTTAAGGATTGCTAGC+AGG - chr3_1:40774527-40774546 None:intergenic 35.0%
ACGGTAATTCTCACGATATT+TGG + chr3_1:40774651-40774670 Msa0357510:intron 35.0%
GAAGCTTCAAAGAAAGAAGA+TGG + chr3_1:40775586-40775605 Msa0357510:intron 35.0%
! TGATTGGTTGATATCATGAG+AGG + chr3_1:40775940-40775959 Msa0357510:intron 35.0%
! GATTGGTTGATATCATGAGA+GGG + chr3_1:40775941-40775960 Msa0357510:intron 35.0%
! GATTACCCTATCTTGTTTAG+AGG - chr3_1:40775974-40775993 None:intergenic 35.0%
AATATAGCCCATTCACTTAC+GGG + chr3_1:40776443-40776462 Msa0357510:CDS 35.0%
TTGAAATCCCGTAAGTGAAT+GGG - chr3_1:40776453-40776472 None:intergenic 35.0%
GTGTGTAGGCAATAGTATAT+TGG - chr3_1:40776525-40776544 None:intergenic 35.0%
ACTATTGCCTACACACTATA+TGG + chr3_1:40776529-40776548 Msa0357510:CDS 35.0%
! ATTGAGGTAATTTCAAGTGG+TGG + chr3_1:40777448-40777467 Msa0357510:CDS 35.0%
GAAGCAGCAAAAAAATGGTT+TGG + chr3_1:40777544-40777563 Msa0357510:CDS 35.0%
!! AAAATGGTTTGGGTTGAACA+AGG + chr3_1:40777555-40777574 Msa0357510:CDS 35.0%
!! AAATGGTTTGGGTTGAACAA+GGG + chr3_1:40777556-40777575 Msa0357510:CDS 35.0%
CAAAGCAGTTGACAAAGATA+AGG + chr3_1:40777597-40777616 Msa0357510:CDS 35.0%
TAAGGTAAAGCAATATGAGC+AGG + chr3_1:40777615-40777634 Msa0357510:CDS 35.0%
AAGGTAAAGCAATATGAGCA+GGG + chr3_1:40777616-40777635 Msa0357510:CDS 35.0%
AACATTGTTTGCTTCTTTGG+TGG + chr3_1:40777700-40777719 Msa0357510:CDS 35.0%
! TTTGCTTCTTTGGTGGTTTA+TGG + chr3_1:40777707-40777726 Msa0357510:CDS 35.0%
GATAGCTAACGAGAAAAAGT+TGG - chr3_1:40777771-40777790 None:intergenic 35.0%
ATAAGTATGAAACGCAAGGT+TGG + chr3_1:40777826-40777845 Msa0357510:CDS 35.0%
TAAGTATGAAACGCAAGGTT+GGG + chr3_1:40777827-40777846 Msa0357510:CDS 35.0%
! ACGTACTCATATGCTTTTCA+TGG - chr3_1:40777868-40777887 None:intergenic 35.0%
GAGTCACTGAAAGCAATATG+TGG + chr3_1:40772185-40772204 Msa0357510:CDS 40.0%
TTTACAAGAAGCGAGTGTAG+TGG + chr3_1:40772247-40772266 Msa0357510:CDS 40.0%
!! TAACACAAACTGGAGTACTG+AGG + chr3_1:40772289-40772308 Msa0357510:CDS 40.0%
! TACGTTACCCTCTCTTGTTT+AGG + chr3_1:40773359-40773378 Msa0357510:intron 40.0%
! ACGTTACCCTCTCTTGTTTA+GGG + chr3_1:40773360-40773379 Msa0357510:intron 40.0%
TTCAAGCATCTTATAGGGAG+AGG - chr3_1:40773606-40773625 None:intergenic 40.0%
!! TGTTTTTGTTCTCACGTTCG+GGG - chr3_1:40774165-40774184 None:intergenic 40.0%
! AAAAGCTTTGGCTGATAGTG+AGG - chr3_1:40774408-40774427 None:intergenic 40.0%
GCTGAAATGGTTATGTCATG+AGG - chr3_1:40774454-40774473 None:intergenic 40.0%
!! TTTTTCGGTTGCTGCTGAAA+TGG - chr3_1:40774467-40774486 None:intergenic 40.0%
AAACTCCCAAAACATCACAG+CGG + chr3_1:40774496-40774515 Msa0357510:intron 40.0%
!! TGACGTGGTTCTGGAAATAA+CGG + chr3_1:40774632-40774651 Msa0357510:intron 40.0%
! TGCAAAGCTGCTCTCAATTT+TGG + chr3_1:40775341-40775360 Msa0357510:intron 40.0%
! GCAAAGCTGCTCTCAATTTT+GGG + chr3_1:40775342-40775361 Msa0357510:intron 40.0%
! CAAAGCTGCTCTCAATTTTG+GGG + chr3_1:40775343-40775362 Msa0357510:intron 40.0%
!!! GGGTTATTTTTATGCCGTGT+TGG + chr3_1:40775363-40775382 Msa0357510:intron 40.0%
CAATGGACGACTTAAGTGAT+TGG + chr3_1:40776149-40776168 Msa0357510:intron 40.0%
GACGACTTAAGTGATTGGAA+TGG + chr3_1:40776154-40776173 Msa0357510:intron 40.0%
ACTTGATTGATATCCACAGG+TGG + chr3_1:40776234-40776253 Msa0357510:intron 40.0%
CTTGATTGATATCCACAGGT+GGG + chr3_1:40776235-40776254 Msa0357510:intron 40.0%
!! AAACTTGAGAGTACCGTTAC+TGG + chr3_1:40776274-40776293 Msa0357510:CDS 40.0%
AATCCCTCTTTCATGTCAGT+GGG - chr3_1:40776373-40776392 None:intergenic 40.0%
!! GATTGCTTCAGTTGGTAAAG+TGG + chr3_1:40776389-40776408 Msa0357510:CDS 40.0%
ACATCTGAACTTCTCTTGCT+TGG + chr3_1:40776412-40776431 Msa0357510:CDS 40.0%
CTTGAAATCCCGTAAGTGAA+TGG - chr3_1:40776454-40776473 None:intergenic 40.0%
TGTGGTTGTGAAGTAGCAAA+AGG - chr3_1:40776500-40776519 None:intergenic 40.0%
! GGCAATAGTATATTGGGTTG+TGG - chr3_1:40776518-40776537 None:intergenic 40.0%
CCTTTCAAGAAGCAAATCTG+AGG - chr3_1:40776562-40776581 None:intergenic 40.0%
! CCTCAGATTTGCTTCTTGAA+AGG + chr3_1:40776559-40776578 Msa0357510:CDS 40.0%
TGTTACAGGTTACAGAACCT+TGG + chr3_1:40777377-40777396 Msa0357510:intron 40.0%
TTGTTCATCCCACCAAATTC+TGG - chr3_1:40777479-40777498 None:intergenic 40.0%
! TGAAGGTGCAACATTGTTCA+TGG + chr3_1:40777651-40777670 Msa0357510:CDS 40.0%
ATGGAGACTACTCAATGTGA+AGG + chr3_1:40777726-40777745 Msa0357510:CDS 40.0%
! CGTTACCCTCTCTTGTTTAG+GGG + chr3_1:40773361-40773380 Msa0357510:intron 45.0%
! GTTACCCTCTCTTGTTTAGG+GGG + chr3_1:40773362-40773381 Msa0357510:intron 45.0%
ACTACCCCCTAAACAAGAGA+GGG - chr3_1:40773369-40773388 None:intergenic 45.0%
AACTACCCCCTAAACAAGAG+AGG - chr3_1:40773370-40773389 None:intergenic 45.0%
AAAAGTCACGATACCTGACG+CGG - chr3_1:40774335-40774354 None:intergenic 45.0%
! TGTTGCCGCTGTGATGTTTT+GGG - chr3_1:40774504-40774523 None:intergenic 45.0%
! GTTATTTCCAGAACCACGTC+AGG - chr3_1:40774633-40774652 None:intergenic 45.0%
CATAAATGTTGCAAGGCGGA+TGG + chr3_1:40775244-40775263 Msa0357510:intron 45.0%
AAAGTCAGGCAAAGGAGATC+TGG - chr3_1:40776111-40776130 None:intergenic 45.0%
ACACACTCAAAGTCAGGCAA+AGG - chr3_1:40776119-40776138 None:intergenic 45.0%
TACCTCACACACTCAAAGTC+AGG - chr3_1:40776125-40776144 None:intergenic 45.0%
AGTGTGTGAGGTAAACGCAA+TGG + chr3_1:40776132-40776151 Msa0357510:intron 45.0%
ATGAAGGAGGTAGCCAGTAA+CGG - chr3_1:40776290-40776309 None:intergenic 45.0%
GGTGCACATCCTAAGAAACA+TGG - chr3_1:40776352-40776371 None:intergenic 45.0%
CAATCCCTCTTTCATGTCAG+TGG - chr3_1:40776374-40776393 None:intergenic 45.0%
GAAAGAGGGATTGCTTCAGT+TGG + chr3_1:40776381-40776400 Msa0357510:CDS 45.0%
TTCATCCCACCAAATTCTGG+AGG - chr3_1:40777476-40777495 None:intergenic 45.0%
!! TAAAATATTAAATAAGTTAA+AGG - chr3_1:40772378-40772397 None:intergenic 5.0%
!!! ATTATTGTAATTTTATTTTT+TGG + chr3_1:40773856-40773875 Msa0357510:intron 5.0%
!! TAGAAAATAATAATAATATA+CGG + chr3_1:40775396-40775415 Msa0357510:intron 5.0%
TCTCTCTCTCTCTCTCTCTC+TGG - chr3_1:40772950-40772969 None:intergenic 50.0%
!! GTTGTTTCTAGAACCGCGTC+AGG + chr3_1:40774319-40774338 Msa0357510:intron 50.0%
! GTGTTGCCGCTGTGATGTTT+TGG - chr3_1:40774505-40774524 None:intergenic 50.0%
TCAACTCACCATACCTGACG+TGG + chr3_1:40774617-40774636 Msa0357510:intron 50.0%
TTCCAGAACCACGTCAGGTA+TGG - chr3_1:40774628-40774647 None:intergenic 50.0%
AAATGTTGCAAGGCGGATGG+TGG + chr3_1:40775247-40775266 Msa0357510:intron 50.0%
AGGCTTAGTCACTAGCGGAA+GGG + chr3_1:40775270-40775289 Msa0357510:intron 50.0%
TAGTCACTAGCGGAAGGGTT+AGG + chr3_1:40775275-40775294 Msa0357510:intron 50.0%
AGGATCAGGATTCTCTCTCG+TGG + chr3_1:40776038-40776057 Msa0357510:intron 50.0%
TGGATGGTCCACATTCACAC+GGG - chr3_1:40776091-40776110 None:intergenic 50.0%
CTGGATGGTCCACATTCACA+CGG - chr3_1:40776092-40776111 None:intergenic 50.0%
TCAGGCAAAGGAGATCTGGA+TGG - chr3_1:40776107-40776126 None:intergenic 50.0%
TGCCTGACTTTGAGTGTGTG+AGG + chr3_1:40776120-40776139 Msa0357510:intron 50.0%
GCATAAGAGAATCCCACCTG+TGG - chr3_1:40776250-40776269 None:intergenic 50.0%
ACCTCCTTCATTGCAGAGGA+TGG + chr3_1:40776299-40776318 Msa0357510:CDS 50.0%
TCCATCCTCTGCAATGAAGG+AGG - chr3_1:40776303-40776322 None:intergenic 50.0%
TCCTTCATTGCAGAGGATGG+AGG + chr3_1:40776302-40776321 Msa0357510:CDS 50.0%
ACCTCCATCCTCTGCAATGA+AGG - chr3_1:40776306-40776325 None:intergenic 50.0%
TGCACCCACTGACATGAAAG+AGG + chr3_1:40776366-40776385 Msa0357510:CDS 50.0%
GCACCCACTGACATGAAAGA+GGG + chr3_1:40776367-40776386 Msa0357510:CDS 50.0%
TGGCTCCTCCAGAATTTGGT+GGG + chr3_1:40777468-40777487 Msa0357510:CDS 50.0%
TCACGTTCGGGGTTGTGGAA+TGG - chr3_1:40774154-40774173 None:intergenic 55.0%
TGTTCTCACGTTCGGGGTTG+TGG - chr3_1:40774159-40774178 None:intergenic 55.0%
! GCTTTGGCTGATAGTGAGGC+AGG - chr3_1:40774404-40774423 None:intergenic 55.0%
CACCATACCTGACGTGGTTC+TGG + chr3_1:40774623-40774642 Msa0357510:intron 55.0%
GGTGGAGGCTTAGTCACTAG+CGG + chr3_1:40775265-40775284 Msa0357510:intron 55.0%
GAGGCTTAGTCACTAGCGGA+AGG + chr3_1:40775269-40775288 Msa0357510:intron 55.0%
CTCTCTCGTGGCAATCTCAC+TGG + chr3_1:40776050-40776069 Msa0357510:intron 55.0%
TCCACATTCACACGGGAGTC+GGG - chr3_1:40776084-40776103 None:intergenic 55.0%
GTCCACATTCACACGGGAGT+CGG - chr3_1:40776085-40776104 None:intergenic 55.0%
GGCTACCTCCTTCATTGCAG+AGG + chr3_1:40776295-40776314 Msa0357510:CDS 55.0%
GTGGTGGCTCCTCCAGAATT+TGG + chr3_1:40777464-40777483 Msa0357510:CDS 55.0%
GTGGCTCCTCCAGAATTTGG+TGG + chr3_1:40777467-40777486 Msa0357510:CDS 55.0%
! TGTTGCAAGGCGGATGGTGG+AGG + chr3_1:40775250-40775269 Msa0357510:intron 60.0%
CACATTCACACGGGAGTCGG+GGG - chr3_1:40776082-40776101 None:intergenic 60.0%
CCACATTCACACGGGAGTCG+GGG - chr3_1:40776083-40776102 None:intergenic 60.0%
CCCCGACTCCCGTGTGAATG+TGG + chr3_1:40776080-40776099 Msa0357510:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 40772176 40777984 40772176 ID=Msa0357510;Name=Msa0357510
chr3_1 mRNA 40772176 40777984 40772176 ID=Msa0357510-mRNA-1;Parent=Msa0357510;Name=Msa0357510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.33|1|1|1|3|132|316
chr3_1 exon 40772176 40772310 40772176 ID=Msa0357510-mRNA-1:exon:7083;Parent=Msa0357510-mRNA-1
chr3_1 exon 40776253 40776600 40776253 ID=Msa0357510-mRNA-1:exon:7084;Parent=Msa0357510-mRNA-1
chr3_1 exon 40777385 40777984 40777385 ID=Msa0357510-mRNA-1:exon:7085;Parent=Msa0357510-mRNA-1
chr3_1 CDS 40772176 40772310 40772176 ID=Msa0357510-mRNA-1:cds;Parent=Msa0357510-mRNA-1
chr3_1 CDS 40776253 40776600 40776253 ID=Msa0357510-mRNA-1:cds;Parent=Msa0357510-mRNA-1
chr3_1 CDS 40777385 40777852 40777385 ID=Msa0357510-mRNA-1:cds;Parent=Msa0357510-mRNA-1
chr3_1 three_prime_UTR 40777853 40777984 40777853 ID=Msa0357510-mRNA-1:three_prime_utr;Parent=Msa0357510-mRNA-1
Gene Sequence

>Msa0357510

ATGTATGTAGAGTCACTGAAAGCAATATGTGGTCAACAAACTACTAATCAAAATGCTTCAAGACATGTAGTTTTACAAGAAGCGAGTGTAGTGGCTTCTTGTTCCTATGAAAGTAACACAAACTGGAGTACTGAGGTGGGATTCTCTTATGCTATAAAACTTGAGAGTACCGTTACTGGCTACCTCCTTCATTGCAGAGGATGGAGGTCAACCTATCTTTATCCAAAAATACCATGTTTCTTAGGATGTGCACCCACTGACATGAAAGAGGGATTGCTTCAGTTGGTAAAGTGGACATCTGAACTTCTCTTGCTTGGAATCTCTAAATATAGCCCATTCACTTACGGGATTTCAAGATTGCCCATTATTCATTGTCTAACCTTTTGCTACTTCACAACCACAACCCAATATACTATTGCCTACACACTATATGGAATCATTCCTCAGATTTGCTTCTTGAAAGGAATTTCTGTATTTCCAAAGGTTACAGAACCTTGGTTTATAGTGTTTACAGTATTATATGTATCCACTCAAATTCAACATTATATTGAGGTAATTTCAAGTGGTGGCTCCTCCAGAATTTGGTGGGATGAACAAAGAAGTTTGATTGTAAAATCAATTGGATGTTTTTTTGCAATTATAGAAGCAGCAAAAAAATGGTTTGGGTTGAACAAGGGAAAATTCAATTTATCAAACAAAGCAGTTGACAAAGATAAGGTAAAGCAATATGAGCAGGGTAAGTTTAATTTTGAAGGTGCAACATTGTTCATGGCACCATTGATTGTGTTGCTCATAATAAACATTGTTTGCTTCTTTGGTGGTTTATGGAGACTACTCAATGTGAAGGATTTTAATGAAATGTTTGGCCAACTTTTTCTCGTTAGCTATCTAATAGCTCTAAGTTATCCTATTATTGAGGGGATTATAAGTATGAAACGCAAGGTTGGGTAG

Protein sequence

>Msa0357510

MYVESLKAICGQQTTNQNASRHVVLQEASVVASCSYESNTNWSTEVGFSYAIKLESTVTGYLLHCRGWRSTYLYPKIPCFLGCAPTDMKEGLLQLVKWTSELLLLGISKYSPFTYGISRLPIIHCLTFCYFTTTTQYTIAYTLYGIIPQICFLKGISVFPKVTEPWFIVFTVLYVSTQIQHYIEVISSGGSSRIWWDEQRSLIVKSIGCFFAIIEAAKKWFGLNKGKFNLSNKAVDKDKVKQYEQGKFNFEGATLFMAPLIVLLIINIVCFFGGLWRLLNVKDFNEMFGQLFLVSYLIALSYPIIEGIISMKRKVG*