AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1264940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264940 MtrunA17_Chr4g0073191 97.906 382 8 0 1 382 29 410 0.0 776
Msa1264940 MtrunA17_Chr3g0140081 30.263 380 223 13 17 368 1 366 2.75e-17 82.4
Msa1264940 MtrunA17_Chr7g0260211 34.122 296 151 9 118 372 175 467 2.52e-15 77.4
Msa1264940 MtrunA17_Chr4g0019631 31.746 252 148 8 87 323 37 279 1.74e-14 73.6
Msa1264940 MtrunA17_Chr1g0204831 30.738 244 136 6 158 371 207 447 6.09e-12 67.0
Msa1264940 MtrunA17_Chr1g0166381 30.043 233 126 6 173 371 231 460 7.90e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1264940 AT5G57770.1 58.000 400 144 11 2 382 9 403 2.55e-134 390
Msa1264940 AT5G57770.2 57.798 327 120 9 2 315 9 330 1.35e-104 312
Msa1264940 AT3G22810.3 31.515 330 176 9 87 371 1 325 7.09e-25 104
Msa1264940 AT3G22810.1 29.211 380 213 11 40 371 92 463 2.00e-24 104
Msa1264940 AT3G22810.2 32.792 308 160 7 40 307 92 392 3.07e-23 100
Msa1264940 AT4G14740.1 32.550 298 157 7 115 371 174 468 4.25e-23 100
Msa1264940 AT4G14740.2 32.550 298 157 7 115 371 174 468 4.25e-23 100
Msa1264940 AT4G14740.3 32.881 295 154 7 115 368 35 326 7.05e-23 98.6
Msa1264940 AT4G14740.4 36.283 226 109 3 115 307 174 397 5.46e-20 91.3
Msa1264940 AT5G47440.1 30.357 280 166 9 115 370 111 385 1.04e-16 81.6
Msa1264940 AT5G43870.1 31.165 369 201 13 40 372 96 447 1.19e-15 78.6
Msa1264940 AT4G17350.1 28.014 282 177 8 115 374 112 389 1.63e-15 77.8
Msa1264940 AT5G43870.2 34.589 292 152 9 40 305 96 374 4.96e-14 73.2
Msa1264940 AT4G16670.1 29.965 287 161 10 115 368 129 408 1.21e-11 66.2
Msa1264940 AT4G16670.2 31.818 220 118 6 115 308 129 342 9.15e-11 63.2

Find 80 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAATAAAGAAATGGTTTA+AGG 0.192823 8_2:+68601826 Msa1264940:CDS
CTGCTATTGTAATTTAATTC+AGG 0.195574 8_2:-68601640 None:intergenic
TCATATAATTTCAGTAAAAT+TGG 0.235781 8_2:-68603612 None:intergenic
GAGGATCTTAGAAGTGTTAT+TGG 0.247047 8_2:+68602064 Msa1264940:CDS
GAATGGATGATGCAGATTTC+AGG 0.263694 8_2:+68601269 Msa1264940:CDS
TGGCTAACTGTAGCATTAAA+AGG 0.287338 8_2:+68602499 Msa1264940:intron
TAAATTACAATAGCAGTTTA+CGG 0.296909 8_2:+68601647 Msa1264940:CDS
TGGATTTCCTTTCACTTGCT+TGG 0.326888 8_2:+68601003 Msa1264940:CDS
CTAGGCTCGAATTGTTTGAT+AGG 0.330134 8_2:-68601092 None:intergenic
CAGCTGCAGCAGTGAGAGTT+AGG 0.331764 8_2:-68602120 None:intergenic
TATTGAAGACAACTACGATT+TGG 0.335481 8_2:+68602588 Msa1264940:CDS
AATAGCCTCTGCTGCTGCTT+TGG 0.340557 8_2:+68601994 Msa1264940:CDS
AGGATTATAGACACTGTTCT+TGG 0.349804 8_2:-68603027 None:intergenic
TGCTATTGTAATTTAATTCA+GGG 0.382516 8_2:-68601639 None:intergenic
ATTGAAGTCTAATGATCTTA+AGG 0.384539 8_2:+68601303 Msa1264940:CDS
ACTAGCACTTGTGCCATTCA+TGG 0.391346 8_2:-68602092 None:intergenic
TTGGTGTAACTTTGCTGTAC+AGG 0.391695 8_2:+68601022 Msa1264940:CDS
CATGCAGCAATGTCCATTGC+AGG 0.399965 8_2:+68601899 Msa1264940:CDS
AATCTTGAGCATATGATTGA+TGG 0.426592 8_2:-68603563 None:intergenic
TTAAGATCATTAGACTTCAA+TGG 0.430741 8_2:-68601301 None:intergenic
TACATGTTATCTGATTGTTT+TGG 0.432430 8_2:+68603471 Msa1264940:CDS
AGTGATCCATGTTGTGGCTC+AGG 0.434842 8_2:-68601053 None:intergenic
GGAAGAGCCATGGGGCTACT+AGG 0.434940 8_2:-68601110 None:intergenic
ATGCATGCAGAGCTGTATAA+AGG 0.440766 8_2:+68603430 Msa1264940:CDS
AGGAAGATTGATTCTTGCAC+AGG 0.450333 8_2:+68602627 Msa1264940:CDS
TAGCCCCATGGCTCTTCCTT+CGG 0.453577 8_2:+68601115 Msa1264940:CDS
AAATCGTAGTTGTCTTCAAT+AGG 0.457610 8_2:-68602586 None:intergenic
AAAGTATGTCAATAAAGAAA+TGG 0.463515 8_2:+68601819 Msa1264940:CDS
GGATCAAGGAACAGATTGAA+TGG 0.466276 8_2:+68602547 Msa1264940:CDS
TGCAAAAGTAGCTGAATCAA+TGG 0.476188 8_2:+68602030 Msa1264940:CDS
TTGTCTTCAATAGGCAAGAT+GGG 0.487903 8_2:-68602577 None:intergenic
AGTGGTAATATCTGCTTCCA+TGG 0.499258 8_2:-68601794 None:intergenic
GATCAAGGAACAGATTGAAT+GGG 0.501658 8_2:+68602548 Msa1264940:CDS
ATCTTCGTCGTTACAAGACA+TGG 0.507918 8_2:+68603533 Msa1264940:CDS
GTTGTCTTCAATAGGCAAGA+TGG 0.510367 8_2:-68602578 None:intergenic
CTCACCGAAGGAAGAGCCAT+GGG 0.512745 8_2:-68601119 None:intergenic
TAGGCTCGAATTGTTTGATA+GGG 0.514312 8_2:-68601091 None:intergenic
GCCACACTTAAAGTAAGATC+AGG 0.526345 8_2:+68602526 Msa1264940:CDS
TGCTGCTGCAACCCCTGCAA+TGG 0.526734 8_2:-68601912 None:intergenic
ATCATATCATGTAGATGCCA+TGG 0.527791 8_2:+68601777 Msa1264940:intron
AGCTACCAAAGCAGCAGCAG+AGG 0.532052 8_2:-68601999 None:intergenic
TAACCTTAGCTTCACTGTTG+AGG 0.534080 8_2:-68603047 None:intergenic
GACTCAGGATGTGCATCTGA+AGG 0.534790 8_2:-68600978 None:intergenic
TTAAAGTAAGATCAGGATCA+AGG 0.540160 8_2:+68602533 Msa1264940:CDS
AATCCTCAACAGTGAAGCTA+AGG 0.541104 8_2:+68603044 Msa1264940:CDS
AGATGCACATCCTGAGTCCA+TGG 0.541397 8_2:+68600983 Msa1264940:CDS
GTTATTGGCTCAGCCATGAA+TGG 0.544355 8_2:+68602079 Msa1264940:CDS
TCCTGATCTTACTTTAAGTG+TGG 0.557535 8_2:-68602527 None:intergenic
GAGCATATGATTGATGGTTG+TGG 0.559092 8_2:-68603557 None:intergenic
GCAAAAGTAGCTGAATCAAT+GGG 0.559749 8_2:+68602031 Msa1264940:CDS
GTGATCCATGTTGTGGCTCA+GGG 0.562607 8_2:-68601052 None:intergenic
CAGATAACATGTATCATCCT+CGG 0.570436 8_2:-68603461 None:intergenic
AGTTACACCAAGCAAGTGAA+AGG 0.575345 8_2:-68601010 None:intergenic
AGCAAGTGAAAGGAAATCCA+TGG 0.584542 8_2:-68601000 None:intergenic
GAAAGGAAATCCATGGACTC+AGG 0.585901 8_2:-68600993 None:intergenic
ACTCAGGATGTGCATCTGAA+GGG 0.587610 8_2:-68600977 None:intergenic
ATCAATGGGAGCTAAGAAAG+AGG 0.593937 8_2:+68602045 Msa1264940:CDS
CTGAACCCTGAGCCACAACA+TGG 0.595899 8_2:+68601047 Msa1264940:CDS
ATGCAGCAATGTCCATTGCA+GGG 0.597636 8_2:+68601900 Msa1264940:CDS
CTCAGGATGTGCATCTGAAG+GGG 0.602490 8_2:-68600976 None:intergenic
TGAAGGGGATAGATTAAACT+CGG 0.616318 8_2:-68600961 None:intergenic
ACATAGATTGCAAAGAGCAG+AGG 0.616604 8_2:+68601874 Msa1264940:CDS
AGAACAAGTGATCCATGTTG+TGG 0.619287 8_2:-68601059 None:intergenic
ATCAAGGAACAGATTGAATG+GGG 0.619443 8_2:+68602549 Msa1264940:CDS
TGTCTTCAATAGGCAAGATG+GGG 0.632757 8_2:-68602576 None:intergenic
CACTTTCAAGCTAGACATGG+TGG 0.633111 8_2:+68603507 Msa1264940:CDS
ACTCACCGAAGGAAGAGCCA+TGG 0.639654 8_2:-68601120 None:intergenic
GGAAGATTGATTCTTGCACA+GGG 0.639974 8_2:+68602628 Msa1264940:CDS
TACAGGTTATACTCATGATG+AGG 0.654471 8_2:+68603270 Msa1264940:intron
ATTCGAGCCTAGTAGCCCCA+TGG 0.664825 8_2:+68601103 Msa1264940:CDS
TGCAGCAATGTCCATTGCAG+GGG 0.667723 8_2:+68601901 Msa1264940:CDS
AGGCACTTTCAAGCTAGACA+TGG 0.677280 8_2:+68603504 Msa1264940:CDS
GTATAAAGGTTCAGAAACCG+AGG 0.678370 8_2:+68603444 Msa1264940:CDS
AGATCATTAGACTTCAATGG+AGG 0.678880 8_2:-68601298 None:intergenic
ACAGGGTGCTGAGTTATATG+TGG 0.679997 8_2:+68602645 Msa1264940:CDS
TTATATGTGGAATCACCAGA+AGG 0.687221 8_2:+68602658 Msa1264940:CDS
GTCTTCAATAGGCAAGATGG+GGG 0.690345 8_2:-68602575 None:intergenic
TCTTCGTCGTTACAAGACAT+GGG 0.693504 8_2:+68603534 Msa1264940:CDS
TCAAGGAACAGATTGAATGG+GGG 0.721493 8_2:+68602550 Msa1264940:CDS
TCACCGAAGGAAGAGCCATG+GGG 0.748102 8_2:-68601118 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAAAGTTTATTTTCTAT+TGG - chr8_2:68602373-68602392 None:intergenic 10.0%
!! CATAAATAATTAAAAGAAAA+GGG - chr8_2:68603346-68603365 None:intergenic 10.0%
!! TCATAAATAATTAAAAGAAA+AGG - chr8_2:68603347-68603366 None:intergenic 10.0%
!! TAGAAAAACATATAATACAT+AGG - chr8_2:68602965-68602984 None:intergenic 15.0%
!!! TTAATTCTTTATGGTATTTT+TGG - chr8_2:68603142-68603161 None:intergenic 15.0%
!! TTAAGTTAAGCTTAATTTAA+TGG - chr8_2:68603170-68603189 None:intergenic 15.0%
!!! TTTAGAGTATAGTTTAAACT+TGG - chr8_2:68601146-68601165 None:intergenic 20.0%
!! TGTTATATAACTGAATTAGA+TGG - chr8_2:68601349-68601368 None:intergenic 20.0%
!! TGCTATTGTAATTTAATTCA+GGG - chr8_2:68601642-68601661 None:intergenic 20.0%
!! TAAATTACAATAGCAGTTTA+CGG + chr8_2:68601647-68601666 Msa1264940:CDS 20.0%
!! AAAGTATGTCAATAAAGAAA+TGG + chr8_2:68601819-68601838 Msa1264940:CDS 20.0%
!! TTTAGTGTAATTATATGTGT+CGG + chr8_2:68602246-68602265 Msa1264940:intron 20.0%
!!! AAAAGTTTATTTTCTATTGG+TGG - chr8_2:68602370-68602389 None:intergenic 20.0%
!! AAGTTAAGAATTATGACATT+TGG - chr8_2:68602715-68602734 None:intergenic 20.0%
!! CTATATATGGTTATACTAAT+TGG - chr8_2:68602790-68602809 None:intergenic 20.0%
!! TAACTTAAAAGTCATACAAA+TGG - chr8_2:68602879-68602898 None:intergenic 20.0%
!! ATTTCAATTATGTCTTAACA+GGG + chr8_2:68602995-68603014 Msa1264940:intron 20.0%
!!! ATTTTAATTTTTCTGACCTT+TGG + chr8_2:68603226-68603245 Msa1264940:intron 20.0%
! AATATTGATCAAAAGTGAGT+AGG - chr8_2:68601216-68601235 None:intergenic 25.0%
! TTAAGATCATTAGACTTCAA+TGG - chr8_2:68601304-68601323 None:intergenic 25.0%
! ATTGAAGTCTAATGATCTTA+AGG + chr8_2:68601303-68601322 Msa1264940:CDS 25.0%
! CTGCTATTGTAATTTAATTC+AGG - chr8_2:68601643-68601662 None:intergenic 25.0%
! ATCTACATGATATGATATGA+TGG - chr8_2:68601773-68601792 None:intergenic 25.0%
!! TTTATTGACATACTTTTCAG+TGG - chr8_2:68601815-68601834 None:intergenic 25.0%
! GTCAATAAAGAAATGGTTTA+AGG + chr8_2:68601826-68601845 Msa1264940:CDS 25.0%
! TCCATAATAGATGAAATGAA+TGG + chr8_2:68602425-68602444 Msa1264940:intron 25.0%
! TCCATTCATTTCATCTATTA+TGG - chr8_2:68602429-68602448 None:intergenic 25.0%
! CTGTTACTGAAAAAAATTGT+TGG + chr8_2:68602479-68602498 Msa1264940:intron 25.0%
!!! TTGGATTTTGACTTTGAAAA+AGG + chr8_2:68602607-68602626 Msa1264940:CDS 25.0%
! ATATGGTTATACTAATTGGA+TGG - chr8_2:68602786-68602805 None:intergenic 25.0%
! CTTAATAATTCTCCTTCTTT+AGG - chr8_2:68602813-68602832 None:intergenic 25.0%
!! GAAAGTCAAACTTTTGTAAT+AGG + chr8_2:68602907-68602926 Msa1264940:intron 25.0%
! GATTTCAATTATGTCTTAAC+AGG + chr8_2:68602994-68603013 Msa1264940:intron 25.0%
! ATGGTGTCTTTAATTCTTTA+TGG - chr8_2:68603151-68603170 None:intergenic 25.0%
!! GTAGTGGTTGTTATTATTAT+AGG + chr8_2:68603394-68603413 Msa1264940:intron 25.0%
!! TACATGTTATCTGATTGTTT+TGG + chr8_2:68603471-68603490 Msa1264940:CDS 25.0%
TGACGCATGAAAATAATTTG+TGG + chr8_2:68601404-68601423 Msa1264940:intron 30.0%
!!! ATGTTCTGTTTTTTCAGTCA+TGG + chr8_2:68601593-68601612 Msa1264940:intron 30.0%
!!! TGTTTTTTCAGTCATGGATA+TGG + chr8_2:68601599-68601618 Msa1264940:intron 30.0%
ATAGCAGTTTACGGAAAAAA+TGG + chr8_2:68601656-68601675 Msa1264940:CDS 30.0%
TAGCAGTTTACGGAAAAAAT+GGG + chr8_2:68601657-68601676 Msa1264940:CDS 30.0%
! ATATTTTTCACTCAGTTTCC+TGG + chr8_2:68601686-68601705 Msa1264940:intron 30.0%
TAATTACACTAAATCGTGTC+CGG - chr8_2:68602239-68602258 None:intergenic 30.0%
GATAATACCCAAAACTATGA+AGG - chr8_2:68602302-68602321 None:intergenic 30.0%
!! GTTTATTTTCTATTGGTGGA+GGG - chr8_2:68602366-68602385 None:intergenic 30.0%
!! AGTTTATTTTCTATTGGTGG+AGG - chr8_2:68602367-68602386 None:intergenic 30.0%
AACAGATTGTACATAGAGTA+CGG - chr8_2:68602464-68602483 None:intergenic 30.0%
TTAAAGTAAGATCAGGATCA+AGG + chr8_2:68602533-68602552 Msa1264940:CDS 30.0%
AAATCGTAGTTGTCTTCAAT+AGG - chr8_2:68602589-68602608 None:intergenic 30.0%
TATTGAAGACAACTACGATT+TGG + chr8_2:68602588-68602607 Msa1264940:CDS 30.0%
AACCATATATAGCCTAAAGA+AGG + chr8_2:68602798-68602817 Msa1264940:intron 30.0%
! CTACTTTGATTTAGGTGAAT+AGG + chr8_2:68603096-68603115 Msa1264940:intron 30.0%
ATGATCTTTACTCAAACTAC+AGG + chr8_2:68603253-68603272 Msa1264940:intron 30.0%
TAATCTGCTAAAAAGCAAGA+AGG + chr8_2:68603298-68603317 Msa1264940:CDS 30.0%
TAGAATGCACGAATAACTTA+TGG + chr8_2:68603372-68603391 Msa1264940:intron 30.0%
!!! ATTGTTTTGGCAACAAGAAA+AGG + chr8_2:68603484-68603503 Msa1264940:CDS 30.0%
AATCTTGAGCATATGATTGA+TGG - chr8_2:68603566-68603585 None:intergenic 30.0%
TGAAGGGGATAGATTAAACT+CGG - chr8_2:68600964-68600983 None:intergenic 35.0%
TAGGCTCGAATTGTTTGATA+GGG - chr8_2:68601094-68601113 None:intergenic 35.0%
TTGATCAAAAGTGAGTAGGT+TGG - chr8_2:68601212-68601231 None:intergenic 35.0%
!! TACGAAAAAGAGTGCTAGAA+TGG + chr8_2:68601252-68601271 Msa1264940:intron 35.0%
AGATCATTAGACTTCAATGG+AGG - chr8_2:68601301-68601320 None:intergenic 35.0%
TAAACACAAAACACAGACAC+CGG + chr8_2:68601372-68601391 Msa1264940:intron 35.0%
ATCATATCATGTAGATGCCA+TGG + chr8_2:68601777-68601796 Msa1264940:intron 35.0%
TGCAAAAGTAGCTGAATCAA+TGG + chr8_2:68602030-68602049 Msa1264940:CDS 35.0%
GCAAAAGTAGCTGAATCAAT+GGG + chr8_2:68602031-68602050 Msa1264940:CDS 35.0%
!! GAGGATCTTAGAAGTGTTAT+TGG + chr8_2:68602064-68602083 Msa1264940:CDS 35.0%
AGTGTAATTATATGTGTCGG+CGG + chr8_2:68602249-68602268 Msa1264940:intron 35.0%
ATACCCAAAACTATGAAGGA+CGG - chr8_2:68602298-68602317 None:intergenic 35.0%
TGGCTAACTGTAGCATTAAA+AGG + chr8_2:68602499-68602518 Msa1264940:intron 35.0%
TCCTGATCTTACTTTAAGTG+TGG - chr8_2:68602530-68602549 None:intergenic 35.0%
GATCAAGGAACAGATTGAAT+GGG + chr8_2:68602548-68602567 Msa1264940:CDS 35.0%
ATCAAGGAACAGATTGAATG+GGG + chr8_2:68602549-68602568 Msa1264940:CDS 35.0%
TTGTCTTCAATAGGCAAGAT+GGG - chr8_2:68602580-68602599 None:intergenic 35.0%
TTATATGTGGAATCACCAGA+AGG + chr8_2:68602658-68602677 Msa1264940:CDS 35.0%
!! ATTGCATTGAAAGTACCTTC+TGG - chr8_2:68602676-68602695 None:intergenic 35.0%
! GAATTATGACATTTGGAGCA+GGG - chr8_2:68602708-68602727 None:intergenic 35.0%
! AGAATTATGACATTTGGAGC+AGG - chr8_2:68602709-68602728 None:intergenic 35.0%
! ATACTAATTGGATGGTAGTG+TGG - chr8_2:68602778-68602797 None:intergenic 35.0%
CTCCTTCTTTAGGCTATATA+TGG - chr8_2:68602803-68602822 None:intergenic 35.0%
AGGATTATAGACACTGTTCT+TGG - chr8_2:68603030-68603049 None:intergenic 35.0%
TGAAGCTAAGGTTAGGATTA+TGG + chr8_2:68603056-68603075 Msa1264940:intron 35.0%
! GTGTCTGTCTACTTTGATTT+AGG + chr8_2:68603088-68603107 Msa1264940:intron 35.0%
ATGATTACATCTTGCTTCAC+TGG + chr8_2:68603194-68603213 Msa1264940:intron 35.0%
AGTAAAGATCATTGCTCCAA+AGG - chr8_2:68603245-68603264 None:intergenic 35.0%
TACAGGTTATACTCATGATG+AGG + chr8_2:68603270-68603289 Msa1264940:intron 35.0%
CAGATAACATGTATCATCCT+CGG - chr8_2:68603464-68603483 None:intergenic 35.0%
AGCAAGTGAAAGGAAATCCA+TGG - chr8_2:68601003-68601022 None:intergenic 40.0%
TGGATTTCCTTTCACTTGCT+TGG + chr8_2:68601003-68601022 Msa1264940:CDS 40.0%
AGTTACACCAAGCAAGTGAA+AGG - chr8_2:68601013-68601032 None:intergenic 40.0%
! TTGGTGTAACTTTGCTGTAC+AGG + chr8_2:68601022-68601041 Msa1264940:CDS 40.0%
AGAACAAGTGATCCATGTTG+TGG - chr8_2:68601062-68601081 None:intergenic 40.0%
CTAGGCTCGAATTGTTTGAT+AGG - chr8_2:68601095-68601114 None:intergenic 40.0%
TTTAAACTTGGACTCACCGA+AGG - chr8_2:68601134-68601153 None:intergenic 40.0%
GAATGGATGATGCAGATTTC+AGG + chr8_2:68601269-68601288 Msa1264940:CDS 40.0%
TTTGTGTGTCTGATAAGCGA+CGG - chr8_2:68601490-68601509 None:intergenic 40.0%
! TTTTTCACTCAGTTTCCTGG+TGG + chr8_2:68601689-68601708 Msa1264940:intron 40.0%
AGTGGTAATATCTGCTTCCA+TGG - chr8_2:68601797-68601816 None:intergenic 40.0%
ACATAGATTGCAAAGAGCAG+AGG + chr8_2:68601874-68601893 Msa1264940:CDS 40.0%
ATCAATGGGAGCTAAGAAAG+AGG + chr8_2:68602045-68602064 Msa1264940:CDS 40.0%
! GTGTAATTATATGTGTCGGC+GGG + chr8_2:68602250-68602269 Msa1264940:intron 40.0%
! TGTCCGTCCTTCATAGTTTT+GGG + chr8_2:68602292-68602311 Msa1264940:intron 40.0%
GCCACACTTAAAGTAAGATC+AGG + chr8_2:68602526-68602545 Msa1264940:CDS 40.0%
GGATCAAGGAACAGATTGAA+TGG + chr8_2:68602547-68602566 Msa1264940:CDS 40.0%
TCAAGGAACAGATTGAATGG+GGG + chr8_2:68602550-68602569 Msa1264940:CDS 40.0%
TGTCTTCAATAGGCAAGATG+GGG - chr8_2:68602579-68602598 None:intergenic 40.0%
GTTGTCTTCAATAGGCAAGA+TGG - chr8_2:68602581-68602600 None:intergenic 40.0%
! AGGAAGATTGATTCTTGCAC+AGG + chr8_2:68602627-68602646 Msa1264940:CDS 40.0%
! GGAAGATTGATTCTTGCACA+GGG + chr8_2:68602628-68602647 Msa1264940:CDS 40.0%
AATCCTCAACAGTGAAGCTA+AGG + chr8_2:68603044-68603063 Msa1264940:CDS 40.0%
TAACCTTAGCTTCACTGTTG+AGG - chr8_2:68603050-68603069 None:intergenic 40.0%
TCAACAGTGAAGCTAAGGTT+AGG + chr8_2:68603049-68603068 Msa1264940:intron 40.0%
GCACGAATAACTTATGGTAG+TGG + chr8_2:68603378-68603397 Msa1264940:intron 40.0%
ATGCATGCAGAGCTGTATAA+AGG + chr8_2:68603430-68603449 Msa1264940:CDS 40.0%
GTATAAAGGTTCAGAAACCG+AGG + chr8_2:68603444-68603463 Msa1264940:CDS 40.0%
ATCTTCGTCGTTACAAGACA+TGG + chr8_2:68603533-68603552 Msa1264940:CDS 40.0%
TCTTCGTCGTTACAAGACAT+GGG + chr8_2:68603534-68603553 Msa1264940:CDS 40.0%
! GAGCATATGATTGATGGTTG+TGG - chr8_2:68603560-68603579 None:intergenic 40.0%
ACTCAGGATGTGCATCTGAA+GGG - chr8_2:68600980-68600999 None:intergenic 45.0%
GAAAGGAAATCCATGGACTC+AGG - chr8_2:68600996-68601015 None:intergenic 45.0%
TCATGCGTCAGTGTTGTATC+CGG - chr8_2:68601394-68601413 None:intergenic 45.0%
ATGCAGCAATGTCCATTGCA+GGG + chr8_2:68601900-68601919 Msa1264940:CDS 45.0%
!! GTTATTGGCTCAGCCATGAA+TGG + chr8_2:68602079-68602098 Msa1264940:CDS 45.0%
! ACTAGCACTTGTGCCATTCA+TGG - chr8_2:68602095-68602114 None:intergenic 45.0%
GGGACTATGAAGCACGAATA+CGG + chr8_2:68602204-68602223 Msa1264940:intron 45.0%
GGACTATGAAGCACGAATAC+GGG + chr8_2:68602205-68602224 Msa1264940:intron 45.0%
TATGAAGGACGGACACTCAT+TGG - chr8_2:68602287-68602306 None:intergenic 45.0%
! GTGTCCGTCCTTCATAGTTT+TGG + chr8_2:68602291-68602310 Msa1264940:intron 45.0%
GTCTTCAATAGGCAAGATGG+GGG - chr8_2:68602578-68602597 None:intergenic 45.0%
!! ACAGGGTGCTGAGTTATATG+TGG + chr8_2:68602645-68602664 Msa1264940:CDS 45.0%
AGGCACTTTCAAGCTAGACA+TGG + chr8_2:68603504-68603523 Msa1264940:CDS 45.0%
CACTTTCAAGCTAGACATGG+TGG + chr8_2:68603507-68603526 Msa1264940:CDS 45.0%
!!! TTTAATTAATACAATTATTT+TGG + chr8_2:68602183-68602202 Msa1264940:intron 5.0%
!!! TTAATTAATACAATTATTTT+GGG + chr8_2:68602184-68602203 Msa1264940:intron 5.0%
!!! TATTTTTTAAAATTCAATAT+TGG + chr8_2:68602399-68602418 Msa1264940:intron 5.0%
CTCAGGATGTGCATCTGAAG+GGG - chr8_2:68600979-68600998 None:intergenic 50.0%
GACTCAGGATGTGCATCTGA+AGG - chr8_2:68600981-68601000 None:intergenic 50.0%
AGATGCACATCCTGAGTCCA+TGG + chr8_2:68600983-68601002 Msa1264940:CDS 50.0%
GTGATCCATGTTGTGGCTCA+GGG - chr8_2:68601055-68601074 None:intergenic 50.0%
AGTGATCCATGTTGTGGCTC+AGG - chr8_2:68601056-68601075 None:intergenic 50.0%
TGCATGTAACTCTCACCACC+AGG - chr8_2:68601707-68601726 None:intergenic 50.0%
CATGCAGCAATGTCCATTGC+AGG + chr8_2:68601899-68601918 Msa1264940:CDS 50.0%
TGCAGCAATGTCCATTGCAG+GGG + chr8_2:68601901-68601920 Msa1264940:CDS 50.0%
! AATAGCCTCTGCTGCTGCTT+TGG + chr8_2:68601994-68602013 Msa1264940:CDS 50.0%
CTGAACCCTGAGCCACAACA+TGG + chr8_2:68601047-68601066 Msa1264940:CDS 55.0%
ATTCGAGCCTAGTAGCCCCA+TGG + chr8_2:68601103-68601122 Msa1264940:CDS 55.0%
TAGCCCCATGGCTCTTCCTT+CGG + chr8_2:68601115-68601134 Msa1264940:CDS 55.0%
TCACCGAAGGAAGAGCCATG+GGG - chr8_2:68601121-68601140 None:intergenic 55.0%
CTCACCGAAGGAAGAGCCAT+GGG - chr8_2:68601122-68601141 None:intergenic 55.0%
ACTCACCGAAGGAAGAGCCA+TGG - chr8_2:68601123-68601142 None:intergenic 55.0%
AGCTACCAAAGCAGCAGCAG+AGG - chr8_2:68602002-68602021 None:intergenic 55.0%
CAGCTGCAGCAGTGAGAGTT+AGG - chr8_2:68602123-68602142 None:intergenic 55.0%
ACGAATACGGGCATAGACGC+CGG + chr8_2:68602217-68602236 Msa1264940:intron 55.0%
GGAAGAGCCATGGGGCTACT+AGG - chr8_2:68601113-68601132 None:intergenic 60.0%
TGCTGCTGCAACCCCTGCAA+TGG - chr8_2:68601915-68601934 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 68600954 68603624 68600954 ID=Msa1264940;Name=Msa1264940
chr8_2 mRNA 68600954 68603624 68600954 ID=Msa1264940-mRNA-1;Parent=Msa1264940;Name=Msa1264940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|8|0|382
chr8_2 exon 68600954 68601136 68600954 ID=Msa1264940-mRNA-1:exon:22725;Parent=Msa1264940-mRNA-1
chr8_2 exon 68601262 68601324 68601262 ID=Msa1264940-mRNA-1:exon:22726;Parent=Msa1264940-mRNA-1
chr8_2 exon 68601610 68601678 68601610 ID=Msa1264940-mRNA-1:exon:22727;Parent=Msa1264940-mRNA-1
chr8_2 exon 68601791 68602148 68601791 ID=Msa1264940-mRNA-1:exon:22728;Parent=Msa1264940-mRNA-1
chr8_2 exon 68602512 68602679 68602512 ID=Msa1264940-mRNA-1:exon:22729;Parent=Msa1264940-mRNA-1
chr8_2 exon 68603016 68603065 68603016 ID=Msa1264940-mRNA-1:exon:22730;Parent=Msa1264940-mRNA-1
chr8_2 exon 68603275 68603323 68603275 ID=Msa1264940-mRNA-1:exon:22731;Parent=Msa1264940-mRNA-1
chr8_2 exon 68603416 68603624 68603416 ID=Msa1264940-mRNA-1:exon:22732;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68600954 68601136 68600954 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68601262 68601324 68601262 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68601610 68601678 68601610 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68601791 68602148 68601791 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68602512 68602679 68602512 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68603016 68603065 68603016 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68603275 68603323 68603275 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
chr8_2 CDS 68603416 68603624 68603416 ID=Msa1264940-mRNA-1:cds;Parent=Msa1264940-mRNA-1
Gene Sequence

>Msa1264940

ATGGCTTCCGAGTTTAATCTATCCCCTTCAGATGCACATCCTGAGTCCATGGATTTCCTTTCACTTGCTTGGTGTAACTTTGCTGTACAGGCTCTGAACCCTGAGCCACAACATGGATCACTTGTTCTACTTGATAACCCTATCAAACAATTCGAGCCTAGTAGCCCCATGGCTCTTCCTTCGAGTGCTAGAATGGATGATGCAGATTTCAGGTCTATACCTCCATTGAAGTCTAATGATCTTAAGTCATGGATATGGATGCAGCAAGCAATGCACCCTGAATTAAATTACAATAGCAGTTTACGGAAAAAATGGATGCCATGGAAGCAGATATTACCACTGAAAAGTATGTCAATAAAGAAATGGTTTAAGGAAATAAAGATGAAGAAGAAAGAAGAACATAGATTGCAAAGAGCAGAGGTGCATGCAGCAATGTCCATTGCAGGGGTTGCAGCAGCACTTGCTGCAATTGCTTCTGAAAATTCAAAAAAAGAGTCAAATGAAGATAGAGAGAAAGCAATAGCCTCTGCTGCTGCTTTGGTAGCTGCTCAGTGTGCAAAAGTAGCTGAATCAATGGGAGCTAAGAAAGAGGATCTTAGAAGTGTTATTGGCTCAGCCATGAATGGCACAAGTGCTAGTGATATCCTAACTCTCACTGCTGCAGCTGCAACATCATTAAAAGGAGCAGCCACACTTAAAGTAAGATCAGGATCAAGGAACAGATTGAATGGGGGAGCCCCCATCTTGCCTATTGAAGACAACTACGATTTGGATTTTGACTTTGAAAAAGGAAGATTGATTCTTGCACAGGGTGCTGAGTTATATGTGGAATCACCAGAAGGGAAGTACATGCCAAGAACAGTGTCTATAATCCTCAACAGTGAAGCTAAGGTTATACTCATGATGAGGAAGCATAATCTGCTAAAAAGCAAGAAGGAGTGTATTGTAATGAATATGCATGCAGAGCTGTATAAAGGTTCAGAAACCGAGGATGATACATGTTATCTGATTGTTTTGGCAACAAGAAAAGGCACTTTCAAGCTAGACATGGTGGATGATCTTCGTCGTTACAAGACATGGGCCACAACCATCAATCATATGCTCAAGATTTCTACTTCTTTTGCAAAATATGAGCTCCAATTTTACTGA

Protein sequence

>Msa1264940

MASEFNLSPSDAHPESMDFLSLAWCNFAVQALNPEPQHGSLVLLDNPIKQFEPSSPMALPSSARMDDADFRSIPPLKSNDLKSWIWMQQAMHPELNYNSSLRKKWMPWKQILPLKSMSIKKWFKEIKMKKKEEHRLQRAEVHAAMSIAGVAAALAAIASENSKKESNEDREKAIASAAALVAAQCAKVAESMGAKKEDLRSVIGSAMNGTSASDILTLTAAAATSLKGAATLKVRSGSRNRLNGGAPILPIEDNYDLDFDFEKGRLILAQGAELYVESPEGKYMPRTVSIILNSEAKVILMMRKHNLLKSKKECIVMNMHAELYKGSETEDDTCYLIVLATRKGTFKLDMVDDLRRYKTWATTINHMLKISTSFAKYELQFY*