AlfalfaGEDB | Msa0056290

M. sativa cultivar zhongmu-4 / Msa0056290

KEGG: K00430
GO: -
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056290	sp\|Q96522\|PER45_ARATH	67.427	307	97	1	22	328	22	325	1.86e-155	441

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056290	A0A072VDU0	97.256	328	9	0	1	328	1	328	0.0	659

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007870	Msa0056290	0.966918	1.441490e-126	-8.615850e-47
Msa0011060	Msa0056290	-0.809004	2.344585e-50	-8.615850e-47
Msa0011100	Msa0056290	-0.813706	2.234247e-51	-8.615850e-47
Msa0027020	Msa0056290	-0.805864	1.086253e-49	-8.615850e-47
Msa0040930	Msa0056290	0.815647	8.303794e-52	-8.615850e-47
Msa0051910	Msa0056290	0.802458	5.557048e-49	-8.615850e-47
Msa0056230	Msa0056290	-0.800315	1.526868e-48	-8.615850e-47
Msa0056290	Msa0098380	0.811465	6.905983e-51	-8.615850e-47
Msa0056290	Msa0111780	0.810784	9.704818e-51	-8.615850e-47
Msa0056290	Msa0117650	0.801976	6.982999e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056290	MtrunA17_Chr1g0148021	97.256	328	9	0	1	328	1	328	0.0	659
Msa0056290	MtrunA17_Chr4g0053871	65.017	303	100	2	26	327	26	323	2.80e-145	412
Msa0056290	MtrunA17_Chr4g0072091	65.677	303	102	1	26	328	23	323	6.35e-145	411
Msa0056290	MtrunA17_Chr5g0401431	60.125	321	125	2	10	327	8	328	5.04e-143	407
Msa0056290	MtrunA17_Chr7g0225221	58.416	303	120	2	26	328	24	320	3.24e-124	358
Msa0056290	MtrunA17_Chr6g0451571	43.252	326	171	6	6	328	20	334	2.58e-88	268
Msa0056290	MtrunA17_Chr4g0046131	42.598	331	178	5	6	326	16	344	2.19e-87	266
Msa0056290	MtrunA17_Chr1g0197411	42.320	319	179	3	13	328	14	330	2.90e-87	265
Msa0056290	MtrunA17_Chr1g0157051	43.925	321	167	8	10	327	7	317	3.98e-84	256
Msa0056290	MtrunA17_Chr2g0292211	46.319	326	165	7	7	328	22	341	1.65e-82	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0056290	AT4G30170.1	67.427	307	97	1	22	328	22	325	1.89e-156	441
Msa0056290	AT2G18980.1	63.863	321	113	1	8	328	6	323	7.05e-151	427
Msa0056290	AT5G67400.1	58.055	329	137	1	1	328	1	329	2.18e-141	403
Msa0056290	AT4G37520.1	60.855	304	118	1	26	328	26	329	1.80e-140	400
Msa0056290	AT4G37530.1	60.131	306	121	1	24	328	24	329	3.14e-140	400
Msa0056290	AT4G37520.2	60.526	304	116	2	26	328	26	326	1.87e-137	393
Msa0056290	AT3G49960.1	57.716	324	135	2	7	328	6	329	2.42e-137	393
Msa0056290	AT4G37530.2	63.281	256	93	1	24	278	24	279	3.32e-122	352
Msa0056290	AT5G14130.1	52.795	322	148	3	7	328	13	330	3.23e-115	337
Msa0056290	AT5G14130.2	52.795	322	148	3	7	328	54	371	8.20e-115	337

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Find 55 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTAGGGATGTCATAGCAT+TGG	0.540127	1_2:-11815625	Msa0056290:intron
AAGAAACAGGTTAACAAGGA+AGG	0.580311	1_2:+11816114	None:intergenic
AAGAATCTTCAGCAAGGAAT+TGG	0.349074	1_2:-11814675	Msa0056290:CDS
AATCTTTCACTAGCTGGTGA+TGG	0.509300	1_2:-11815738	Msa0056290:CDS
AATGACAAAGGATCTTTCAA+AGG	0.558847	1_2:+11814572	None:intergenic
ACAGGTTAACAAGGAAGGTG+AGG	0.591799	1_2:+11816119	None:intergenic
ACATGGATCCTATTACACCT+AGG	0.672246	1_2:-11814719	Msa0056290:CDS
ACCAAAATGTTTGCTTCGCA+TGG	0.466786	1_2:-11815063	Msa0056290:CDS
ACTGATCTAATTGCTCTATC+AGG	0.379757	1_2:-11815030	Msa0056290:intron
AGCTTTGCTAGTTTAAATTC+TGG	0.381289	1_2:+11815087	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTATTTGTGTATGTATGTAC+AGG	-	chr1_2:11814804-11814823	Msa0056290:CDS	30.0%
AATCAAACCAAACTGGTATA+AGG	+	chr1_2:11815195-11815214	None:intergenic	30.0%
TAAATTCTGGATGAGGTAAA+TGG	+	chr1_2:11815530-11815549	None:intergenic	30.0%
GAATATGAGACTCGTTATTT+AGG	-	chr1_2:11815659-11815678	Msa0056290:CDS	30.0%
CGAATTTACAACTTCAAAAG+TGG	-	chr1_2:11815796-11815815	Msa0056290:CDS	30.0%
AATGACAAAGGATCTTTCAA+AGG	+	chr1_2:11816058-11816077	None:intergenic	30.0%
GTATTTGTGTATGTATGTAC+AGG	-	chr1_2:11814804-11814823	Msa0056290:CDS	30.0%
AATCAAACCAAACTGGTATA+AGG	+	chr1_2:11815195-11815214	None:intergenic	30.0%
TAAATTCTGGATGAGGTAAA+TGG	+	chr1_2:11815530-11815549	None:intergenic	30.0%
GAATATGAGACTCGTTATTT+AGG	-	chr1_2:11815659-11815678	Msa0056290:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	11814491	11816158	11814491	ID=Msa0056290;Name=Msa0056290
chr1_2	mRNA	11814491	11816158	11814491	ID=Msa0056290-mRNA-1;Parent=Msa0056290;Name=Msa0056290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|0.66\|0\|1\|1\|1\|4\|0\|328
chr1_2	exon	11815943	11816158	11815943	ID=Msa0056290-mRNA-1:exon:4545;Parent=Msa0056290-mRNA-1
chr1_2	exon	11815626	11815823	11815626	ID=Msa0056290-mRNA-1:exon:4544;Parent=Msa0056290-mRNA-1
chr1_2	exon	11815031	11815196	11815031	ID=Msa0056290-mRNA-1:exon:4543;Parent=Msa0056290-mRNA-1
chr1_2	exon	11814491	11814897	11814491	ID=Msa0056290-mRNA-1:exon:4542;Parent=Msa0056290-mRNA-1
chr1_2	CDS	11815943	11816158	11815943	ID=Msa0056290-mRNA-1:cds;Parent=Msa0056290-mRNA-1
chr1_2	CDS	11815626	11815823	11815626	ID=Msa0056290-mRNA-1:cds;Parent=Msa0056290-mRNA-1
chr1_2	CDS	11815031	11815196	11815031	ID=Msa0056290-mRNA-1:cds;Parent=Msa0056290-mRNA-1
chr1_2	CDS	11814491	11814897	11814491	ID=Msa0056290-mRNA-1:cds;Parent=Msa0056290-mRNA-1

Gene Sequence

>Msa0056290

ATGGGTTCTCTCAGCTTCCTCACCTTCCTTGTTAACCTGTTTCTTTTGCAGCTCATGACTACTTGTAATGCAACAAAACTTAGAGTTGACTATTACAGAAACACATGTCCAAATGTTGAATCAATAGTCAAAAATGCAGTTGAGATGAAACTTCAGCAAACATTTGTTACAGCACCTGCTACACTTAGGCTCTTTTTCCATGATTGTTTTGTTCAGGGATGTGATGCTTCTGTGATGTTAGCTACAAGAAACAGCACTTCAGAAAAAGATAATCCTATTAATCTTTCACTAGCTGGTGATGGATTTGACACAGTAATCAAAGCAAAGGCTGCAGTTGATAGTGTACCTGGCTGCCAAAACAAGGTTTCATGTGCTGACATTTTGGCATTGGCAACTAGGGATGTCATAGCATTGACAGGAGGGCCATCTTATGCAGTAGAGTTGGGACGGCTCGATGGGAGAACATCTACAAAAGCAAGTGTGACAAACCATTTACCTCATCCAGAATTTAAACTAGCAAAGCTAACCAAAATGTTTGCTTCGCATGGCCTCACTCTTACTGATCTAATTGCTCTATCAGGAGCGCATACTATTGGATTCTCTCACTGCAGCCAATTTTCGAAACGAATTTACAACTTCAAAAGTGGGAAGGTAATTGATCCATCACTTAATCGTGGATATGCAAAACAGCTCCAAAATGTGTGTCCAAAAGATGTTGACCCTAGACTTGCCATTGACATGGATCCTATTACACCTAGGACATTTGATAACCAGTACTACAAGAATCTTCAGCAAGGAATTGGACTACTCTCTTCAGATCAATCTTTGTTTACTCATAAAAGTTCAAGAAACCTAGTGAACTTGTTTGCATCAGATAACACAGCCTTTGAAAGATCCTTTGTCATTGCTATAACAAAGCTTGGTCGAATCGGTGTCAAAACAGGAAGACAGGGCGAAATCAGACGCGATTGCTCGATGATTAACTGA

Protein sequence

>Msa0056290

MGSLSFLTFLVNLFLLQLMTTCNATKLRVDYYRNTCPNVESIVKNAVEMKLQQTFVTAPATLRLFFHDCFVQGCDASVMLATRNSTSEKDNPINLSLAGDGFDTVIKAKAAVDSVPGCQNKVSCADILALATRDVIALTGGPSYAVELGRLDGRTSTKASVTNHLPHPEFKLAKLTKMFASHGLTLTDLIALSGAHTIGFSHCSQFSKRIYNFKSGKVIDPSLNRGYAKQLQNVCPKDVDPRLAIDMDPITPRTFDNQYYKNLQQGIGLLSSDQSLFTHKSSRNLVNLFASDNTAFERSFVIAITKLGRIGVKTGRQGEIRRDCSMIN*