Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027480 | XP_013468473.1 | 96.604 | 265 | 9 | 0 | 1 | 265 | 15 | 279 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027480 | sp|P49842|STK19_HUMAN | 29.439 | 214 | 135 | 6 | 56 | 264 | 165 | 367 | 1.73e-25 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027480 | Msa0027540 | 0.800750 | 1.244725e-48 | -8.615850e-47 |
| Msa0027480 | Msa0030380 | 0.817644 | 2.963259e-52 | -8.615850e-47 |
| Msa0027480 | Msa0041970 | 0.806605 | 7.586506e-50 | -8.615850e-47 |
| Msa0027480 | Msa0044710 | 0.813930 | 1.995112e-51 | -8.615850e-47 |
| Msa0027480 | Msa0075310 | 0.812745 | 3.632581e-51 | -8.615850e-47 |
| Msa0027480 | Msa0136390 | 0.816278 | 6.005589e-52 | -8.615850e-47 |
| Msa0027480 | Msa0143080 | 0.814008 | 1.917392e-51 | -8.615850e-47 |
| Msa0027480 | Msa0165390 | 0.975667 | 2.244074e-140 | -8.615850e-47 |
| Msa0027480 | Msa0173740 | 0.825010 | 5.918571e-54 | -8.615850e-47 |
| Msa0027480 | Msa0173820 | 0.828425 | 9.054987e-55 | -8.615850e-47 |
| Msa0027480 | Msa0173830 | 0.834198 | 3.443930e-56 | -8.615850e-47 |
| Msa0027480 | Msa0178990 | 0.809704 | 1.658680e-50 | -8.615850e-47 |
| Msa0027480 | Msa0182930 | 0.813791 | 2.140170e-51 | -8.615850e-47 |
| Msa0027480 | Msa0223100 | 0.808107 | 3.642602e-50 | -8.615850e-47 |
| Msa0027480 | Msa0223290 | 0.816340 | 5.817702e-52 | -8.615850e-47 |
| Msa0027480 | Msa0236980 | 0.817483 | 3.221749e-52 | -8.615850e-47 |
| Msa0027480 | Msa0244270 | 0.822119 | 2.808883e-53 | -8.615850e-47 |
| Msa0027480 | Msa0252180 | 0.802121 | 6.521207e-49 | -8.615850e-47 |
| Msa0027480 | Msa0280490 | 0.805362 | 1.384752e-49 | -8.615850e-47 |
| Msa0027480 | Msa0288240 | 0.833351 | 5.606236e-56 | -8.615850e-47 |
| Msa0027480 | Msa0326670 | 0.816588 | 5.119184e-52 | -8.615850e-47 |
| Msa0027480 | Msa0328210 | 0.838580 | 2.642627e-57 | -8.615850e-47 |
| Msa0027480 | Msa0344640 | 0.801485 | 8.808560e-49 | -8.615850e-47 |
| Msa0027480 | Msa0380040 | 0.802186 | 6.321844e-49 | -8.615850e-47 |
| Msa0027480 | Msa0469970 | 0.808770 | 2.630927e-50 | -8.615850e-47 |
| Msa0027480 | Msa0480320 | 0.813525 | 2.449818e-51 | -8.615850e-47 |
| Msa0027480 | Msa0487910 | 0.815758 | 7.846908e-52 | -8.615850e-47 |
| Msa0027480 | Msa0535450 | 0.810696 | 1.014031e-50 | -8.615850e-47 |
| Msa0027480 | Msa0553220 | -0.804700 | 1.904625e-49 | -8.615850e-47 |
| Msa0027480 | Msa0607340 | -0.806016 | 1.009225e-49 | -8.615850e-47 |
| Msa0027480 | Msa0618010 | 0.808789 | 2.605942e-50 | -8.615850e-47 |
| Msa0027480 | Msa0619070 | 0.808914 | 2.450826e-50 | -8.615850e-47 |
| Msa0027480 | Msa0655660 | -0.818056 | 2.391524e-52 | -8.615850e-47 |
| Msa0027480 | Msa0677270 | 0.801540 | 8.581119e-49 | -8.615850e-47 |
| Msa0027480 | Msa0789270 | 0.813191 | 2.899868e-51 | -8.615850e-47 |
| Msa0027480 | Msa0789280 | 0.809455 | 1.876044e-50 | -8.615850e-47 |
| Msa0027480 | Msa0789290 | 0.804868 | 1.756917e-49 | -8.615850e-47 |
| Msa0027480 | Msa0790390 | -0.800525 | 1.383739e-48 | -8.615850e-47 |
| Msa0027480 | Msa1072460 | -0.817016 | 4.103250e-52 | -8.615850e-47 |
| Msa0027480 | Msa1130210 | -0.804340 | 2.264285e-49 | -8.615850e-47 |
| Msa0027480 | Msa1265960 | 0.802185 | 6.326364e-49 | -8.615850e-47 |
| Msa0027480 | Msa1282920 | 0.813275 | 2.779181e-51 | -8.615850e-47 |
| Msa0027480 | Msa1403580 | -0.805859 | 1.089162e-49 | -8.615850e-47 |
| Msa0027480 | Msa1439960 | 0.805189 | 1.505377e-49 | -8.615850e-47 |
| Msa0027480 | Msa1452470 | 0.808141 | 3.582806e-50 | -8.615850e-47 |
| Msa0027480 | Msa1454110 | 0.802440 | 5.603764e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027480 | MtrunA17_Chr1g0183731 | 96.604 | 265 | 9 | 0 | 1 | 265 | 15 | 279 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027480 | AT2G20495.1 | 63.177 | 277 | 88 | 1 | 3 | 265 | 6 | 282 | 5.86e-117 | 337 |
| Msa0027480 | AT2G20495.3 | 63.177 | 277 | 88 | 1 | 3 | 265 | 28 | 304 | 1.86e-116 | 336 |
| Msa0027480 | AT2G20495.4 | 63.177 | 277 | 88 | 1 | 3 | 265 | 28 | 304 | 1.86e-116 | 336 |
| Msa0027480 | AT2G20495.2 | 55.235 | 277 | 83 | 2 | 3 | 265 | 6 | 255 | 2.00e-94 | 278 |
| Msa0027480 | AT2G20495.5 | 61.702 | 188 | 58 | 1 | 3 | 176 | 28 | 215 | 1.04e-67 | 210 |
Find 70 sgRNAs with CRISPR-Local
Find 459 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTTTACGTTGGGAATT+TGG | 0.149659 | 1_1:-51793034 | None:intergenic |
| CAAGTAAATCGATGACTTTC+TGG | 0.173845 | 1_1:-51798901 | None:intergenic |
| TTTATAAATGGATATATAAT+TGG | 0.196125 | 1_1:+51799021 | Msa0027480:three_prime_UTR |
| ATTATTTCATCCTTTGATTA+AGG | 0.199441 | 1_1:+51799098 | Msa0027480:three_prime_UTR |
| TTAAGAAGTGAGCCAATATT+TGG | 0.201191 | 1_1:-51796174 | None:intergenic |
| GGAGATGATGTTGGCCGTTT+TGG | 0.216965 | 1_1:+51798749 | Msa0027480:CDS |
| CTTCGTGATTTGATTGGTTC+TGG | 0.263566 | 1_1:+51798816 | Msa0027480:CDS |
| GTTGTTTACGTTGGGAATTT+GGG | 0.272118 | 1_1:-51793033 | None:intergenic |
| AAATATTGGCTCACTTCTTA+AGG | 0.278463 | 1_1:+51796176 | Msa0027480:CDS |
| TGGATAGCAATTCCAAATAT+TGG | 0.303054 | 1_1:+51796162 | Msa0027480:CDS |
| GATTTAGTTGCTTATTGCTT+TGG | 0.339625 | 1_1:+51798974 | Msa0027480:three_prime_UTR |
| TCGCCGGCGTTTGGTGCCTT+TGG | 0.341623 | 1_1:-51792833 | None:intergenic |
| TCTCAGTCGTCGTCAATATA+AGG | 0.345742 | 1_1:+51798728 | Msa0027480:CDS |
| GGATGCCTGCATTAATTAGA+AGG | 0.346961 | 1_1:-51795305 | None:intergenic |
| GAGTGATGATGAGGTGTTTC+CGG | 0.351277 | 1_1:-51792872 | None:intergenic |
| ACAAGTGGATAGGGAATTAG+AGG | 0.366461 | 1_1:+51793194 | Msa0027480:CDS |
| CAGTATCCAGCTTTGAATCT+AGG | 0.367011 | 1_1:-51794173 | None:intergenic |
| ATTGCTATCCAATACATGTT+TGG | 0.383912 | 1_1:-51796150 | None:intergenic |
| CAGAAAGTCATCGATTTACT+TGG | 0.388972 | 1_1:+51798902 | Msa0027480:three_prime_UTR |
| TAATTAAACCAACCTGTATC+AGG | 0.391322 | 1_1:-51793442 | None:intergenic |
| TTATTGATCCAAACATGTAT+TGG | 0.394700 | 1_1:+51796142 | Msa0027480:CDS |
| AATATTGGCTCACTTCTTAA+GGG | 0.398984 | 1_1:+51796177 | Msa0027480:CDS |
| CTAGATTCAAAGCTGGATAC+TGG | 0.403549 | 1_1:+51794174 | Msa0027480:CDS |
| TTTCATCTTCGTGATTTGAT+TGG | 0.404061 | 1_1:+51798810 | Msa0027480:CDS |
| ACTTCTTAAGGGTCTTGTTC+AGG | 0.406180 | 1_1:+51796188 | Msa0027480:CDS |
| AATTGAGACTTCAATATAAA+CGG | 0.415521 | 1_1:-51793147 | None:intergenic |
| GCAGCAGACAAATCATTTCA+TGG | 0.416429 | 1_1:-51798927 | None:intergenic |
| TGTTTATACCAGTCGGAGTC+TGG | 0.426579 | 1_1:-51798854 | None:intergenic |
| TTTCGATGACTACCTGATAC+AGG | 0.431931 | 1_1:+51793430 | Msa0027480:CDS |
| CAGTGCTCACTCTTATCACT+TGG | 0.442591 | 1_1:+51795255 | Msa0027480:intron |
| GGATAGAACACAAGTGGATA+GGG | 0.450293 | 1_1:+51793185 | Msa0027480:CDS |
| TGATGAGGTGTTTCCGGCGT+CGG | 0.488956 | 1_1:-51792866 | None:intergenic |
| AGATCGTGTTGTTAAAAGAA+TGG | 0.489174 | 1_1:+51794098 | Msa0027480:CDS |
| ATTTCCCTTCTAATTAATGC+AGG | 0.491086 | 1_1:+51795300 | Msa0027480:CDS |
| TACGGAGGGATAAAGTGCTT+CGG | 0.502955 | 1_1:+51793363 | Msa0027480:CDS |
| GTTTGGATCAATAAGTTGCC+TGG | 0.512904 | 1_1:-51796133 | None:intergenic |
| CAGCTTTGAATCTAGGACAT+GGG | 0.516008 | 1_1:-51794166 | None:intergenic |
| AGGATAGAACACAAGTGGAT+AGG | 0.516568 | 1_1:+51793184 | Msa0027480:CDS |
| ATTTATTTGTGCAGTTGCTA+CGG | 0.518702 | 1_1:+51793345 | Msa0027480:intron |
| TAAAAGAATGGAAGGAAAGA+CGG | 0.526403 | 1_1:+51794110 | Msa0027480:CDS |
| TACAGCATGATCATCTTGTC+CGG | 0.530142 | 1_1:-51793402 | None:intergenic |
| CCAGCTTTGAATCTAGGACA+TGG | 0.532480 | 1_1:-51794167 | None:intergenic |
| CGTGTTGTTAAAAGAATGGA+AGG | 0.532834 | 1_1:+51794102 | Msa0027480:CDS |
| CATCCAAAGGCACCAAACGC+CGG | 0.533648 | 1_1:+51792830 | Msa0027480:CDS |
| TTACTTTGTTCAGGGAAGGA+AGG | 0.542305 | 1_1:+51798692 | Msa0027480:intron |
| AGATCTGACCAGACTCCGAC+TGG | 0.550141 | 1_1:+51798846 | Msa0027480:CDS |
| GTGCTCACTCTTATCACTTG+GGG | 0.551777 | 1_1:+51795257 | Msa0027480:intron |
| AGTGCTCACTCTTATCACTT+GGG | 0.551965 | 1_1:+51795256 | Msa0027480:intron |
| CCATGTCCTAGATTCAAAGC+TGG | 0.558260 | 1_1:+51794167 | Msa0027480:CDS |
| TCAATATAAGGAGATGATGT+TGG | 0.563090 | 1_1:+51798740 | Msa0027480:CDS |
| TATATTGACGACGACTGAGA+AGG | 0.568489 | 1_1:-51798725 | None:intergenic |
| ACTTCAGAATTCACGACGCA+TGG | 0.570222 | 1_1:+51792789 | Msa0027480:exon |
| ATATTGACGACGACTGAGAA+GGG | 0.577460 | 1_1:-51798724 | None:intergenic |
| AAAAGAATGGAAGGAAAGAC+GGG | 0.580255 | 1_1:+51794111 | Msa0027480:CDS |
| AGATGAAATCTCATATCAAG+TGG | 0.585012 | 1_1:-51798795 | None:intergenic |
| TTGTTTACGTTGGGAATTTG+GGG | 0.588572 | 1_1:-51793032 | None:intergenic |
| ATTTCAGAATCTTCATCCAA+AGG | 0.592530 | 1_1:+51792817 | Msa0027480:CDS |
| ATTTGTGCAGTTGCTACGGA+GGG | 0.601414 | 1_1:+51793349 | Msa0027480:intron |
| TTGAAGAGCGAGTAGTGTAT+CGG | 0.616190 | 1_1:-51792991 | None:intergenic |
| GATGAAATCTCATATCAAGT+GGG | 0.616247 | 1_1:-51798794 | None:intergenic |
| TGTGAAGGATAGAACACAAG+TGG | 0.616638 | 1_1:+51793179 | Msa0027480:CDS |
| GGATACTGGCATCGAACATG+AGG | 0.616710 | 1_1:+51794188 | Msa0027480:CDS |
| TATTTGTGCAGTTGCTACGG+AGG | 0.619404 | 1_1:+51793348 | Msa0027480:intron |
| GATGCCTGCATTAATTAGAA+GGG | 0.622432 | 1_1:-51795304 | None:intergenic |
| TCAATTGTATAGCAGTGTGA+AGG | 0.633361 | 1_1:+51793164 | Msa0027480:CDS |
| CGAACTGAAAATTCCGACGC+CGG | 0.636610 | 1_1:+51792853 | Msa0027480:CDS |
| TGCTCACTCTTATCACTTGG+GGG | 0.640890 | 1_1:+51795258 | Msa0027480:CDS |
| ATGAAATCTCATATCAAGTG+GGG | 0.664901 | 1_1:-51798793 | None:intergenic |
| GGAAACACCTCATCATCACT+CGG | 0.683915 | 1_1:+51792874 | Msa0027480:CDS |
| GTGTGTACCGAGTGATGATG+AGG | 0.693005 | 1_1:-51792881 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATGTTTATTTTATTTAT+AGG | + | chr1_1:51793113-51793132 | Msa0027480:intron | 10.0% |
| !!! | TTTATTTTATTTATAGGTTT+CGG | + | chr1_1:51793119-51793138 | Msa0027480:intron | 10.0% |
| !!! | AATTTTAATTATAAAAGAAG+GGG | - | chr1_1:51793975-51793994 | None:intergenic | 10.0% |
| !!! | CAATTTTAATTATAAAAGAA+GGG | - | chr1_1:51793976-51793995 | None:intergenic | 10.0% |
| !! | ATTATAATAACTAAGTAATA+TGG | + | chr1_1:51796877-51796896 | Msa0027480:intron | 10.0% |
| !! | TTTATAAATGGATATATAAT+TGG | + | chr1_1:51799021-51799040 | Msa0027480:three_prime_UTR | 10.0% |
| !!! | TTTAAGCTTTTTAGTTTTAA+TGG | + | chr1_1:51793284-51793303 | Msa0027480:intron | 15.0% |
| !!! | ATGATTTGTATTAAGATTTA+AGG | + | chr1_1:51793319-51793338 | Msa0027480:intron | 15.0% |
| !!! | GATAAAAATATCTAAAATGA+AGG | - | chr1_1:51793942-51793961 | None:intergenic | 15.0% |
| !!! | CCAATTTTAATTATAAAAGA+AGG | - | chr1_1:51793977-51793996 | None:intergenic | 15.0% |
| !!! | CCTTCTTTTATAATTAAAAT+TGG | + | chr1_1:51793974-51793993 | Msa0027480:intron | 15.0% |
| !!! | GTTTGATTTTTATTGAATTA+AGG | - | chr1_1:51794573-51794592 | None:intergenic | 15.0% |
| !! | ATCAAAGTAAAAATTTAACA+TGG | - | chr1_1:51795148-51795167 | None:intergenic | 15.0% |
| !! | AAAAAAATATGAAGTTTACT+TGG | - | chr1_1:51795465-51795484 | None:intergenic | 15.0% |
| !!! | GTAATATGGAAATTAATTTT+AGG | + | chr1_1:51796891-51796910 | Msa0027480:intron | 15.0% |
| !! | ATAATATCAAATGATATGAA+AGG | + | chr1_1:51796977-51796996 | Msa0027480:intron | 15.0% |
| !!! | TTTATAATGTTTGTGTATTT+TGG | + | chr1_1:51798632-51798651 | Msa0027480:intron | 15.0% |
| !! | AATTGAGACTTCAATATAAA+CGG | - | chr1_1:51793150-51793169 | None:intergenic | 20.0% |
| !! | TAAATATAAACCATTTACTC+CGG | - | chr1_1:51793731-51793750 | None:intergenic | 20.0% |
| !! | ATATTTAAATGTACGTGATA+AGG | + | chr1_1:51793744-51793763 | Msa0027480:intron | 20.0% |
| !! | ATTGTATGTATATATGTCTT+CGG | + | chr1_1:51793839-51793858 | Msa0027480:intron | 20.0% |
| !! | TAATTAAAATTGGATGTCTT+TGG | + | chr1_1:51793984-51794003 | Msa0027480:intron | 20.0% |
| !!! | AAAAACAATTCCGTTTTTTA+TGG | - | chr1_1:51794831-51794850 | None:intergenic | 20.0% |
| !!! | AAAAAACGGAATTGTTTTTT+TGG | + | chr1_1:51794832-51794851 | Msa0027480:intron | 20.0% |
| !!! | AATTGTTTTTTTGGAACTTT+TGG | + | chr1_1:51794841-51794860 | Msa0027480:intron | 20.0% |
| !!! | ACTTTGATTTTAAATCATGT+AGG | + | chr1_1:51795160-51795179 | Msa0027480:intron | 20.0% |
| !!! | ATATTTTTTTTTTGCCAATG+TGG | + | chr1_1:51795475-51795494 | Msa0027480:intron | 20.0% |
| !! | AAAACAAAAAAAACGCTTAA+AGG | - | chr1_1:51795743-51795762 | None:intergenic | 20.0% |
| !! | ATATTATATGCCTAATCAAA+GGG | - | chr1_1:51795879-51795898 | None:intergenic | 20.0% |
| !! | AATATTATATGCCTAATCAA+AGG | - | chr1_1:51795880-51795899 | None:intergenic | 20.0% |
| !!! | ATCTTTAATTTATAACTGCT+AGG | + | chr1_1:51795928-51795947 | Msa0027480:intron | 20.0% |
| !! | TAAACAACGTTAAAGTAAAA+GGG | - | chr1_1:51795975-51795994 | None:intergenic | 20.0% |
| !! | ATAAACAACGTTAAAGTAAA+AGG | - | chr1_1:51795976-51795995 | None:intergenic | 20.0% |
| !! | ATAATTATGTATAATGACTC+TGG | + | chr1_1:51796095-51796114 | Msa0027480:intron | 20.0% |
| !! | AGTTTAATCTATATCATTTG+TGG | + | chr1_1:51796261-51796280 | Msa0027480:intron | 20.0% |
| !! | AGCATAAATATAAGTCATTT+AGG | + | chr1_1:51796620-51796639 | Msa0027480:intron | 20.0% |
| !!! | GTCATTTTCTTTGAATTTTT+TGG | - | chr1_1:51797323-51797342 | None:intergenic | 20.0% |
| !! | TACATGAATGAATAATAGAA+TGG | - | chr1_1:51797987-51798006 | None:intergenic | 20.0% |
| !! | ACAAACATTATAAATTTCCA+TGG | - | chr1_1:51798626-51798645 | None:intergenic | 20.0% |
| !!! | TAATTGTTTTACTTTGTTCA+GGG | + | chr1_1:51798684-51798703 | Msa0027480:intron | 20.0% |
| !! | ATTATTTCATCCTTTGATTA+AGG | + | chr1_1:51799098-51799117 | Msa0027480:three_prime_UTR | 20.0% |
| !!! | TAAACTTTTTCCTTAATCAA+AGG | - | chr1_1:51799111-51799130 | None:intergenic | 20.0% |
| !! | TAGTTAATGTTGTTTACGTT+GGG | - | chr1_1:51793044-51793063 | None:intergenic | 25.0% |
| !! | ATAGTTAATGTTGTTTACGT+TGG | - | chr1_1:51793045-51793064 | None:intergenic | 25.0% |
| !! | AATTAGAGGTTTGTTTGTTT+AGG | + | chr1_1:51793208-51793227 | Msa0027480:intron | 25.0% |
| !!! | GCTTTTTAGTTTTAATGGAT+TGG | + | chr1_1:51793289-51793308 | Msa0027480:intron | 25.0% |
| !! | CGGCTTTTTAAATTAAATAC+CGG | + | chr1_1:51793383-51793402 | Msa0027480:CDS | 25.0% |
| ! | TGAAAACGACTTATAGAATA+TGG | - | chr1_1:51793578-51793597 | None:intergenic | 25.0% |
| ! | TAGCTCATATGAAAAAACTT+TGG | + | chr1_1:51793605-51793624 | Msa0027480:intron | 25.0% |
| ! | TGGAAATGATTAAACAGTAT+AGG | - | chr1_1:51794241-51794260 | None:intergenic | 25.0% |
| ! | CATCAGAAATCTTTATAATC+TGG | + | chr1_1:51794285-51794304 | Msa0027480:intron | 25.0% |
| ! | CAAAACTCTTGAATACAAAA+TGG | + | chr1_1:51794698-51794717 | Msa0027480:intron | 25.0% |
| ! | TGACAAATGAGTGTATAATT+AGG | - | chr1_1:51795584-51795603 | None:intergenic | 25.0% |
| ! | TGTCATATCTTTCTTTCATT+CGG | + | chr1_1:51795599-51795618 | Msa0027480:intron | 25.0% |
| ! | TCAAAGCATGAAATAAGATA+AGG | - | chr1_1:51795831-51795850 | None:intergenic | 25.0% |
| ! | TTATTGATCCAAACATGTAT+TGG | + | chr1_1:51796142-51796161 | Msa0027480:CDS | 25.0% |
| !!! | AGTTAAGAGTGTTAGATAAA+AGG | + | chr1_1:51796416-51796435 | Msa0027480:intron | 25.0% |
| ! | AATAAGAGCTTGAACATTAT+TGG | + | chr1_1:51796447-51796466 | Msa0027480:intron | 25.0% |
| ! | AAACACTATCTCCTATTTAT+AGG | + | chr1_1:51796504-51796523 | Msa0027480:intron | 25.0% |
| ! | AACACTATCTCCTATTTATA+GGG | + | chr1_1:51796505-51796524 | Msa0027480:intron | 25.0% |
| ! | ACACCAAATCAAAATCATTT+AGG | - | chr1_1:51796740-51796759 | None:intergenic | 25.0% |
| !!! | AAATGATTTTGATTTGGTGT+TGG | + | chr1_1:51796740-51796759 | Msa0027480:intron | 25.0% |
| !!! | AATGATTTTGATTTGGTGTT+GGG | + | chr1_1:51796741-51796760 | Msa0027480:intron | 25.0% |
| ! | AAACACTATCTCCTATTTAT+AGG | + | chr1_1:51796504-51796523 | Msa0027480:intron | 25.0% |
| ! | AACACTATCTCCTATTTATA+GGG | + | chr1_1:51796505-51796524 | Msa0027480:intron | 25.0% |
| !! | GATATTCTGAGAATATAAAC+TGG | + | chr1_1:51796925-51796944 | Msa0027480:intron | 25.0% |
| !! | TAAAATGATAGTGTGATGAA+GGG | - | chr1_1:51797108-51797127 | None:intergenic | 25.0% |
| !!! | CACACTATCATTTTAGTTTT+TGG | + | chr1_1:51797113-51797132 | Msa0027480:intron | 25.0% |
| ! | TTACATGAATGAACAATAGA+AGG | - | chr1_1:51797724-51797743 | None:intergenic | 25.0% |
| ! | AATAGACATCAGAACAAAAA+TGG | - | chr1_1:51798456-51798475 | None:intergenic | 25.0% |
| !! | TTGAGTTATTTCATTCTGAT+TGG | + | chr1_1:51798524-51798543 | Msa0027480:intron | 25.0% |
| !! | TGAGTTATTTCATTCTGATT+GGG | + | chr1_1:51798525-51798544 | Msa0027480:intron | 25.0% |
| !!! | GTAATTGTTTTACTTTGTTC+AGG | + | chr1_1:51798683-51798702 | Msa0027480:intron | 25.0% |
| !!! | ATTTTGATGTTTATACCAGT+CGG | - | chr1_1:51798864-51798883 | None:intergenic | 25.0% |
| ATTTCAGAATCTTCATCCAA+AGG | + | chr1_1:51792817-51792836 | Msa0027480:CDS | 30.0% | |
| AACGTGTAAAGAAAGAGAAA+TGG | - | chr1_1:51792927-51792946 | None:intergenic | 30.0% | |
| ATTTATTTGTGCAGTTGCTA+CGG | + | chr1_1:51793345-51793364 | Msa0027480:intron | 30.0% | |
| TAATTAAACCAACCTGTATC+AGG | - | chr1_1:51793445-51793464 | None:intergenic | 30.0% | |
| AAACTACTGTGAGAGATTTA+GGG | + | chr1_1:51793503-51793522 | Msa0027480:intron | 30.0% | |
| !! | AATTGTCTTGTTTGAGCTTA+TGG | + | chr1_1:51793535-51793554 | Msa0027480:intron | 30.0% |
| ACATGTACATAAGCACATTT+AGG | + | chr1_1:51793655-51793674 | Msa0027480:intron | 30.0% | |
| TTGACAAATGTTTGGTTGTT+TGG | + | chr1_1:51793808-51793827 | Msa0027480:intron | 30.0% | |
| ! | AATATCTAAAATGAAGGCAC+TGG | - | chr1_1:51793936-51793955 | None:intergenic | 30.0% |
| AGTTAGAAGAATTAACACGA+CGG | - | chr1_1:51794064-51794083 | None:intergenic | 30.0% | |
| ! | AGATCGTGTTGTTAAAAGAA+TGG | + | chr1_1:51794098-51794117 | Msa0027480:CDS | 30.0% |
| TAAAAGAATGGAAGGAAAGA+CGG | + | chr1_1:51794110-51794129 | Msa0027480:CDS | 30.0% | |
| TTTATAATCTGGCTAATGTC+CGG | + | chr1_1:51794296-51794315 | Msa0027480:intron | 30.0% | |
| CAATATGAATATCTGACACA+TGG | + | chr1_1:51794340-51794359 | Msa0027480:intron | 30.0% | |
| TAGTAAGCTGCCAATTAATT+TGG | - | chr1_1:51794676-51794695 | None:intergenic | 30.0% | |
| !!! | TGTTTTTTTGGAACTTTTGG+TGG | + | chr1_1:51794844-51794863 | Msa0027480:intron | 30.0% |
| !!! | GTTTTTTTGGAACTTTTGGT+GGG | + | chr1_1:51794845-51794864 | Msa0027480:intron | 30.0% |
| ! | TGATTTTAAATCATGTAGGC+TGG | + | chr1_1:51795164-51795183 | Msa0027480:intron | 30.0% |
| ACTCGTTTAGTAAATATCCT+GGG | - | chr1_1:51795206-51795225 | None:intergenic | 30.0% | |
| AACTCGTTTAGTAAATATCC+TGG | - | chr1_1:51795207-51795226 | None:intergenic | 30.0% | |
| !!! | TAAACGAGTTTTTTTGCTGA+TGG | + | chr1_1:51795217-51795236 | Msa0027480:intron | 30.0% |
| ATTTCCCTTCTAATTAATGC+AGG | + | chr1_1:51795300-51795319 | Msa0027480:CDS | 30.0% | |
| TCAACTTCATTTCCTGTAAA+TGG | + | chr1_1:51795439-51795458 | Msa0027480:intron | 30.0% | |
| TTTGGTATTGTAAACCACAT+TGG | - | chr1_1:51795492-51795511 | None:intergenic | 30.0% | |
| !!! | AAAGTGAATGCTACTGATTT+TGG | - | chr1_1:51795510-51795529 | None:intergenic | 30.0% |
| ATGAAACAACTGTTATCTTG+TGG | + | chr1_1:51795540-51795559 | Msa0027480:intron | 30.0% | |
| AATGTACGATAAGATCAAAC+AGG | - | chr1_1:51795667-51795686 | None:intergenic | 30.0% | |
| GAAAGTTTGTCTTGTATTGT+AGG | - | chr1_1:51795857-51795876 | None:intergenic | 30.0% | |
| ATATAATCAACATAAGCAGC+AGG | - | chr1_1:51795906-51795925 | None:intergenic | 30.0% | |
| AAGTAAAAGGGAAATTTGTG+TGG | - | chr1_1:51795963-51795982 | None:intergenic | 30.0% | |
| ATATATACGCACACATGTTA+TGG | - | chr1_1:51796054-51796073 | None:intergenic | 30.0% | |
| ! | TGTGCGTATATATGTTCTTT+TGG | + | chr1_1:51796061-51796080 | Msa0027480:intron | 30.0% |
| ATTGCTATCCAATACATGTT+TGG | - | chr1_1:51796153-51796172 | None:intergenic | 30.0% | |
| TGGATAGCAATTCCAAATAT+TGG | + | chr1_1:51796162-51796181 | Msa0027480:CDS | 30.0% | |
| TTAAGAAGTGAGCCAATATT+TGG | - | chr1_1:51796177-51796196 | None:intergenic | 30.0% | |
| !! | AAATATTGGCTCACTTCTTA+AGG | + | chr1_1:51796176-51796195 | Msa0027480:CDS | 30.0% |
| !! | AATATTGGCTCACTTCTTAA+GGG | + | chr1_1:51796177-51796196 | Msa0027480:CDS | 30.0% |
| ATTTGTGGTCATGTATAACA+TGG | + | chr1_1:51796276-51796295 | Msa0027480:intron | 30.0% | |
| ! | AACATGGACCATCTTTTAAA+TGG | + | chr1_1:51796292-51796311 | Msa0027480:intron | 30.0% |
| CCAATAGACCATTTAAAAGA+TGG | - | chr1_1:51796303-51796322 | None:intergenic | 30.0% | |
| ! | CCATCTTTTAAATGGTCTAT+TGG | + | chr1_1:51796300-51796319 | Msa0027480:intron | 30.0% |
| AGTCACATATCCCTATAAAT+AGG | - | chr1_1:51796518-51796537 | None:intergenic | 30.0% | |
| GTAAATAGGAGATAGTGTTT+AGG | - | chr1_1:51796547-51796566 | None:intergenic | 30.0% | |
| AAACACTATCTCCTATTTAC+AGG | + | chr1_1:51796547-51796566 | Msa0027480:intron | 30.0% | |
| AACACTATCTCCTATTTACA+GGG | + | chr1_1:51796548-51796567 | Msa0027480:intron | 30.0% | |
| AGACTAAACACTAAACACTT+TGG | + | chr1_1:51796576-51796595 | Msa0027480:intron | 30.0% | |
| ! | GGGAAAAGTATGAAAAAGAA+AGG | + | chr1_1:51796658-51796677 | Msa0027480:intron | 30.0% |
| !!! | GTGCCTAAATGATTTTGATT+TGG | + | chr1_1:51796734-51796753 | Msa0027480:intron | 30.0% |
| AGTCTCAAATCCCTATAAAT+AGG | - | chr1_1:51796827-51796846 | None:intergenic | 30.0% | |
| TGTTTCTTGCTTTCTCATTT+AGG | - | chr1_1:51796856-51796875 | None:intergenic | 30.0% | |
| TGGTTCCAAGAAATAAACTA+AGG | + | chr1_1:51796945-51796964 | Msa0027480:intron | 30.0% | |
| ! | GAGTACCTTAGTTTATTTCT+TGG | - | chr1_1:51796953-51796972 | None:intergenic | 30.0% |
| ! | AATTAAGAATAAGAGAGTGC+AGG | + | chr1_1:51797027-51797046 | Msa0027480:intron | 30.0% |
| ! | AAAATGATAGTGTGATGAAG+GGG | - | chr1_1:51797107-51797126 | None:intergenic | 30.0% |
| ! | CTAAAATGATAGTGTGATGA+AGG | - | chr1_1:51797109-51797128 | None:intergenic | 30.0% |
| TTAGGTAATTGACAGTACTT+GGG | + | chr1_1:51797468-51797487 | Msa0027480:intron | 30.0% | |
| AATCCACTACATGGAATTTA+AGG | + | chr1_1:51798081-51798100 | Msa0027480:intron | 30.0% | |
| ATCCACTACATGGAATTTAA+GGG | + | chr1_1:51798082-51798101 | Msa0027480:intron | 30.0% | |
| !! | ATATTCTGAAATACCTGAAG+AGG | + | chr1_1:51798196-51798215 | Msa0027480:intron | 30.0% |
| CTACATAGGATAGATATATC+CGG | - | chr1_1:51798480-51798499 | None:intergenic | 30.0% | |
| GATATATCTATCCTATGTAG+TGG | + | chr1_1:51798480-51798499 | Msa0027480:intron | 30.0% | |
| ! | GAGTTATTTCATTCTGATTG+GGG | + | chr1_1:51798526-51798545 | Msa0027480:intron | 30.0% |
| !!! | GTTTGTGTATTTTGGTCTTT+AGG | + | chr1_1:51798640-51798659 | Msa0027480:intron | 30.0% |
| TCAATATAAGGAGATGATGT+TGG | + | chr1_1:51798740-51798759 | Msa0027480:CDS | 30.0% | |
| ATGAAATCTCATATCAAGTG+GGG | - | chr1_1:51798796-51798815 | None:intergenic | 30.0% | |
| GATGAAATCTCATATCAAGT+GGG | - | chr1_1:51798797-51798816 | None:intergenic | 30.0% | |
| AGATGAAATCTCATATCAAG+TGG | - | chr1_1:51798798-51798817 | None:intergenic | 30.0% | |
| TTTCATCTTCGTGATTTGAT+TGG | + | chr1_1:51798810-51798829 | Msa0027480:CDS | 30.0% | |
| GATTTAGTTGCTTATTGCTT+TGG | + | chr1_1:51798974-51798993 | Msa0027480:three_prime_UTR | 30.0% | |
| ! | ATGGAGGTGTAGAATTGAAA+AGG | - | chr1_1:51792908-51792927 | None:intergenic | 35.0% |
| GTGTAAAGAAAGAGAAATGG+AGG | - | chr1_1:51792924-51792943 | None:intergenic | 35.0% | |
| TTGTTTACGTTGGGAATTTG+GGG | - | chr1_1:51793035-51793054 | None:intergenic | 35.0% | |
| GTTGTTTACGTTGGGAATTT+GGG | - | chr1_1:51793036-51793055 | None:intergenic | 35.0% | |
| ! | TGTTGTTTACGTTGGGAATT+TGG | - | chr1_1:51793037-51793056 | None:intergenic | 35.0% |
| TCAATTGTATAGCAGTGTGA+AGG | + | chr1_1:51793164-51793183 | Msa0027480:CDS | 35.0% | |
| CTAAATCTCTCACAGTAGTT+TGG | - | chr1_1:51793504-51793523 | None:intergenic | 35.0% | |
| CAAACTACTGTGAGAGATTT+AGG | + | chr1_1:51793502-51793521 | Msa0027480:intron | 35.0% | |
| AAACATTTGTCAACTAGGAG+AGG | - | chr1_1:51793801-51793820 | None:intergenic | 35.0% | |
| TCTCCTAGTTGACAAATGTT+TGG | + | chr1_1:51793800-51793819 | Msa0027480:intron | 35.0% | |
| CAACCAAACATTTGTCAACT+AGG | - | chr1_1:51793806-51793825 | None:intergenic | 35.0% | |
| GGTCACAAGAATGTATTGTT+GGG | + | chr1_1:51793860-51793879 | Msa0027480:intron | 35.0% | |
| GTCACAAGAATGTATTGTTG+GGG | + | chr1_1:51793861-51793880 | Msa0027480:intron | 35.0% | |
| ! | CGTGTTGTTAAAAGAATGGA+AGG | + | chr1_1:51794102-51794121 | Msa0027480:CDS | 35.0% |
| AAAAGAATGGAAGGAAAGAC+GGG | + | chr1_1:51794111-51794130 | Msa0027480:CDS | 35.0% | |
| !! | CAGAATGTGAAGTTTTTGAG+TGG | + | chr1_1:51794136-51794155 | Msa0027480:CDS | 35.0% |
| GAAACAGATTGTGTATGTGT+TGG | + | chr1_1:51794607-51794626 | Msa0027480:intron | 35.0% | |
| ACTGACCTTCTCTTTCTTTA+TGG | - | chr1_1:51794636-51794655 | None:intergenic | 35.0% | |
| ATAAAGAAAGAGAAGGTCAG+TGG | + | chr1_1:51794635-51794654 | Msa0027480:intron | 35.0% | |
| GGGAATAGCTCCAAATTAAT+TGG | + | chr1_1:51794663-51794682 | Msa0027480:intron | 35.0% | |
| CAGAAAACCCCAAATTTACA+CGG | - | chr1_1:51794770-51794789 | None:intergenic | 35.0% | |
| !! | TAAATTTGGGGTTTTCTGGA+GGG | + | chr1_1:51794772-51794791 | Msa0027480:intron | 35.0% |
| TTATGGATCAGTCCTGAAAT+CGG | - | chr1_1:51794814-51794833 | None:intergenic | 35.0% | |
| CAGGACTGATCCATAAAAAA+CGG | + | chr1_1:51794818-51794837 | Msa0027480:intron | 35.0% | |
| ! | CCTGGAATACAATGTCATTT+GGG | + | chr1_1:51794974-51794993 | Msa0027480:intron | 35.0% |
| TGACATGTTCACATATACAG+TGG | + | chr1_1:51795079-51795098 | Msa0027480:intron | 35.0% | |
| ATGGCAAACTTGAAAATGTC+TGG | - | chr1_1:51795129-51795148 | None:intergenic | 35.0% | |
| GTCAATATATATCTTAGCCC+AGG | + | chr1_1:51795186-51795205 | Msa0027480:intron | 35.0% | |
| TTTGCTGATGGTTGTTTGTT+TGG | + | chr1_1:51795229-51795248 | Msa0027480:intron | 35.0% | |
| GATGCCTGCATTAATTAGAA+GGG | - | chr1_1:51795307-51795326 | None:intergenic | 35.0% | |
| TGCAATCCATTTCACTTACA+AGG | - | chr1_1:51795329-51795348 | None:intergenic | 35.0% | |
| ! | GATTGCATCATTGCTCATTT+TGG | + | chr1_1:51795342-51795361 | Msa0027480:intron | 35.0% |
| TAAACTGTCACAACTTTGCT+TGG | + | chr1_1:51795389-51795408 | Msa0027480:intron | 35.0% | |
| AAGTTTACTTGGCCATTTAC+AGG | - | chr1_1:51795454-51795473 | None:intergenic | 35.0% | |
| GATAAGATCAAACAGGAAAC+TGG | - | chr1_1:51795660-51795679 | None:intergenic | 35.0% | |
| ATTAGCTGCATTGAGAATCT+TGG | + | chr1_1:51795798-51795817 | Msa0027480:intron | 35.0% | |
| GCATGAAATAAGATAAGGAG+TGG | - | chr1_1:51795826-51795845 | None:intergenic | 35.0% | |
| GACAAACTTTCCCTTTGATT+AGG | + | chr1_1:51795866-51795885 | Msa0027480:intron | 35.0% | |
| TGTTATGGATGCAACTAAAC+AGG | - | chr1_1:51796039-51796058 | None:intergenic | 35.0% | |
| GTTTACCATGTCTTTATGTC+TGG | + | chr1_1:51796225-51796244 | Msa0027480:intron | 35.0% | |
| TAAACCGTCCGATTAAATAG+AGG | + | chr1_1:51796371-51796390 | Msa0027480:intron | 35.0% | |
| TCTACCTCTATTTAATCGGA+CGG | - | chr1_1:51796378-51796397 | None:intergenic | 35.0% | |
| TCCGATTAAATAGAGGTAGA+AGG | + | chr1_1:51796378-51796397 | Msa0027480:intron | 35.0% | |
| CCCTTCTACCTCTATTTAAT+CGG | - | chr1_1:51796382-51796401 | None:intergenic | 35.0% | |
| CCGATTAAATAGAGGTAGAA+GGG | + | chr1_1:51796379-51796398 | Msa0027480:intron | 35.0% | |
| ATTAAATAGAGGTAGAAGGG+TGG | + | chr1_1:51796382-51796401 | Msa0027480:intron | 35.0% | |
| AGTCTCATATCCCTGTAAAT+AGG | - | chr1_1:51796561-51796580 | None:intergenic | 35.0% | |
| ! | AAATGATAGTGTGATGAAGG+GGG | - | chr1_1:51797106-51797125 | None:intergenic | 35.0% |
| GAAATCTGTGGGATAATTGA+TGG | - | chr1_1:51797283-51797302 | None:intergenic | 35.0% | |
| TCAATTATCCCACAGATTTC+AGG | + | chr1_1:51797283-51797302 | Msa0027480:intron | 35.0% | |
| CTTAGGTAATTGACAGTACT+TGG | + | chr1_1:51797467-51797486 | Msa0027480:intron | 35.0% | |
| ATTTCTCGAGAGATTGAAAG+AGG | + | chr1_1:51797533-51797552 | Msa0027480:intron | 35.0% | |
| AATCCGCTACATGGAATTTA+AGG | + | chr1_1:51797815-51797834 | Msa0027480:intron | 35.0% | |
| ATCCGCTACATGGAATTTAA+GGG | + | chr1_1:51797816-51797835 | Msa0027480:intron | 35.0% | |
| !! | GAATTTAAGGGCATTGTGTT+GGG | + | chr1_1:51797828-51797847 | Msa0027480:intron | 35.0% |
| TGTATCTATGCACTACTAGT+AGG | + | chr1_1:51797946-51797965 | Msa0027480:intron | 35.0% | |
| !!! | GAATACGTGTTGCTATTTTG+AGG | + | chr1_1:51798055-51798074 | Msa0027480:intron | 35.0% |
| TTGAGGTTTAATCCACTACA+TGG | + | chr1_1:51798072-51798091 | Msa0027480:intron | 35.0% | |
| !! | GAATTTAAGGGCATTGTGTT+AGG | + | chr1_1:51797828-51797847 | Msa0027480:intron | 35.0% |
| CAGGTATTTCAGAATATCTG+AGG | - | chr1_1:51798193-51798212 | None:intergenic | 35.0% | |
| GTACATATTTCAAGCTCACA+AGG | + | chr1_1:51798308-51798327 | Msa0027480:intron | 35.0% | |
| TCGTAATTCTGATCTCTGTT+AGG | + | chr1_1:51798384-51798403 | Msa0027480:intron | 35.0% | |
| ACATCAGAACAAAAATGGAC+TGG | - | chr1_1:51798451-51798470 | None:intergenic | 35.0% | |
| TTTGTTCTGATGTCTATTGC+CGG | + | chr1_1:51798458-51798477 | Msa0027480:intron | 35.0% | |
| ATTCTGATTGGGGTATGATT+TGG | + | chr1_1:51798536-51798555 | Msa0027480:intron | 35.0% | |
| TTCTGATTGGGGTATGATTT+GGG | + | chr1_1:51798537-51798556 | Msa0027480:intron | 35.0% | |
| !!! | ATGCTCAGTTACTTTTTCCA+TGG | + | chr1_1:51798606-51798625 | Msa0027480:intron | 35.0% |
| ! | TGTTTTACTTTGTTCAGGGA+AGG | + | chr1_1:51798688-51798707 | Msa0027480:intron | 35.0% |
| ! | AAGACGCTTCTTTTCCAAAA+CGG | - | chr1_1:51798766-51798785 | None:intergenic | 35.0% |
| CAAGTAAATCGATGACTTTC+TGG | - | chr1_1:51798904-51798923 | None:intergenic | 35.0% | |
| !! | CAGAAAGTCATCGATTTACT+TGG | + | chr1_1:51798902-51798921 | Msa0027480:three_prime_UTR | 35.0% |
| ! | TGAGATCGTTTTCTGCGAAT+TGG | - | chr1_1:51792965-51792984 | None:intergenic | 40.0% |
| TTGAAGAGCGAGTAGTGTAT+CGG | - | chr1_1:51792994-51793013 | None:intergenic | 40.0% | |
| TGTGAAGGATAGAACACAAG+TGG | + | chr1_1:51793179-51793198 | Msa0027480:CDS | 40.0% | |
| AGGATAGAACACAAGTGGAT+AGG | + | chr1_1:51793184-51793203 | Msa0027480:CDS | 40.0% | |
| GGATAGAACACAAGTGGATA+GGG | + | chr1_1:51793185-51793204 | Msa0027480:CDS | 40.0% | |
| ACAAGTGGATAGGGAATTAG+AGG | + | chr1_1:51793194-51793213 | Msa0027480:CDS | 40.0% | |
| TACAGCATGATCATCTTGTC+CGG | - | chr1_1:51793405-51793424 | None:intergenic | 40.0% | |
| TTTCGATGACTACCTGATAC+AGG | + | chr1_1:51793430-51793449 | Msa0027480:CDS | 40.0% | |
| ATGCATGTATGTTGTCAGTC+TGG | + | chr1_1:51793478-51793497 | Msa0027480:intron | 40.0% | |
| CGGTCACAAGAATGTATTGT+TGG | + | chr1_1:51793859-51793878 | Msa0027480:intron | 40.0% | |
| TTGGATGTCTTTGGCGTTTA+TGG | + | chr1_1:51793993-51794012 | Msa0027480:intron | 40.0% | |
| !! | CAGCTTTGAATCTAGGACAT+GGG | - | chr1_1:51794169-51794188 | None:intergenic | 40.0% |
| !! | CAGTATCCAGCTTTGAATCT+AGG | - | chr1_1:51794176-51794195 | None:intergenic | 40.0% |
| CTAGATTCAAAGCTGGATAC+TGG | + | chr1_1:51794174-51794193 | Msa0027480:CDS | 40.0% | |
| GACAGTAAAATGAGCAGAAG+TGG | - | chr1_1:51794261-51794280 | None:intergenic | 40.0% | |
| CTGACACATGGTACTCAAAT+CGG | + | chr1_1:51794352-51794371 | Msa0027480:intron | 40.0% | |
| TGACACATGGTACTCAAATC+GGG | + | chr1_1:51794353-51794372 | Msa0027480:intron | 40.0% | |
| CGATACACGATTCAAAACAG+TGG | - | chr1_1:51794400-51794419 | None:intergenic | 40.0% | |
| GGAAGCCATAAAGAAAGAGA+AGG | + | chr1_1:51794628-51794647 | Msa0027480:intron | 40.0% | |
| TGTGACACATCAGATATTGC+AGG | - | chr1_1:51794728-51794747 | None:intergenic | 40.0% | |
| CAAATTTACACGGTTCCCTT+GGG | - | chr1_1:51794760-51794779 | None:intergenic | 40.0% | |
| CAAGGGAACCGTGTAAATTT+GGG | + | chr1_1:51794759-51794778 | Msa0027480:intron | 40.0% | |
| AAGGGAACCGTGTAAATTTG+GGG | + | chr1_1:51794760-51794779 | Msa0027480:intron | 40.0% | |
| !! | CGTGTAAATTTGGGGTTTTC+TGG | + | chr1_1:51794768-51794787 | Msa0027480:intron | 40.0% |
| !! | GTAAATTTGGGGTTTTCTGG+AGG | + | chr1_1:51794771-51794790 | Msa0027480:intron | 40.0% |
| TATGGATCAGTCCTGAAATC+GGG | - | chr1_1:51794813-51794832 | None:intergenic | 40.0% | |
| ! | TTTCGTTTGTTGCAGAAACC+AGG | - | chr1_1:51794884-51794903 | None:intergenic | 40.0% |
| CGAAAATGTCACAGTATCGT+AGG | + | chr1_1:51794899-51794918 | Msa0027480:intron | 40.0% | |
| CGTAGGATACCAGATTGAAT+CGG | + | chr1_1:51794916-51794935 | Msa0027480:intron | 40.0% | |
| GTAGGATACCAGATTGAATC+GGG | + | chr1_1:51794917-51794936 | Msa0027480:intron | 40.0% | |
| TAGGATACCAGATTGAATCG+GGG | + | chr1_1:51794918-51794937 | Msa0027480:intron | 40.0% | |
| GCCTGGAATACAATGTCATT+TGG | + | chr1_1:51794973-51794992 | Msa0027480:intron | 40.0% | |
| CCCAAATGACATTGTATTCC+AGG | - | chr1_1:51794977-51794996 | None:intergenic | 40.0% | |
| AGTGCTCACTCTTATCACTT+GGG | + | chr1_1:51795256-51795275 | Msa0027480:intron | 40.0% | |
| GGATGCCTGCATTAATTAGA+AGG | - | chr1_1:51795308-51795327 | None:intergenic | 40.0% | |
| AGGCATCCTTGTAAGTGAAA+TGG | + | chr1_1:51795320-51795339 | Msa0027480:intron | 40.0% | |
| AAACTGGCGTGTTAGAATCA+GGG | - | chr1_1:51795644-51795663 | None:intergenic | 40.0% | |
| TATGGATGCAACTAAACAGG+AGG | - | chr1_1:51796036-51796055 | None:intergenic | 40.0% | |
| GTTTGGATCAATAAGTTGCC+TGG | - | chr1_1:51796136-51796155 | None:intergenic | 40.0% | |
| !! | ACTTCTTAAGGGTCTTGTTC+AGG | + | chr1_1:51796188-51796207 | Msa0027480:CDS | 40.0% |
| AGCATCCAGACATAAAGACA+TGG | - | chr1_1:51796233-51796252 | None:intergenic | 40.0% | |
| ! | ACTTTGGAGATACACTTGCT+TGG | + | chr1_1:51796592-51796611 | Msa0027480:intron | 40.0% |
| TTTAGGCACACACACACAAA+AGG | + | chr1_1:51796637-51796656 | Msa0027480:intron | 40.0% | |
| TTAGGCACACACACACAAAA+GGG | + | chr1_1:51796638-51796657 | Msa0027480:intron | 40.0% | |
| ! | GTTGTGCATTTTGCTTCAGA+GGG | - | chr1_1:51797151-51797170 | None:intergenic | 40.0% |
| ! | AGTTGTGCATTTTGCTTCAG+AGG | - | chr1_1:51797152-51797171 | None:intergenic | 40.0% |
| GAGCAATGCTCTTGTATTTG+AGG | - | chr1_1:51797188-51797207 | None:intergenic | 40.0% | |
| !! | TACAAGAGCATTGCTCCATA+TGG | + | chr1_1:51797192-51797211 | Msa0027480:intron | 40.0% |
| TTGGAGGTTGGATATCAGAT+GGG | - | chr1_1:51797220-51797239 | None:intergenic | 40.0% | |
| ATTGGAGGTTGGATATCAGA+TGG | - | chr1_1:51797221-51797240 | None:intergenic | 40.0% | |
| !! | GATAATTGATGGCGGAATTC+TGG | - | chr1_1:51797272-51797291 | None:intergenic | 40.0% |
| ATCTGTGGGATAATTGATGG+CGG | - | chr1_1:51797280-51797299 | None:intergenic | 40.0% | |
| GAAACGAACCTGAAATCTGT+GGG | - | chr1_1:51797294-51797313 | None:intergenic | 40.0% | |
| TGAAACGAACCTGAAATCTG+TGG | - | chr1_1:51797295-51797314 | None:intergenic | 40.0% | |
| AGGTATGAAGCGAATTCTGA+GGG | - | chr1_1:51797423-51797442 | None:intergenic | 40.0% | |
| AAGGTATGAAGCGAATTCTG+AGG | - | chr1_1:51797424-51797443 | None:intergenic | 40.0% | |
| ! | GCTTCATACCTTCTAGAAAG+TGG | + | chr1_1:51797432-51797451 | Msa0027480:intron | 40.0% |
| TCAATTACCTAAGCCATCTC+AGG | - | chr1_1:51797460-51797479 | None:intergenic | 40.0% | |
| TGGGTAAATGACATCGTTTC+TGG | + | chr1_1:51797487-51797506 | Msa0027480:intron | 40.0% | |
| CTGGTCAAATTGATCAATCC+TGG | + | chr1_1:51797506-51797525 | Msa0027480:intron | 40.0% | |
| ATCTCTCGAGAAATTTGACC+AGG | - | chr1_1:51797527-51797546 | None:intergenic | 40.0% | |
| GAGATTGAAAGAGGTTGTGA+TGG | + | chr1_1:51797542-51797561 | Msa0027480:intron | 40.0% | |
| ATTGAAAGAGGTTGTGATGG+TGG | + | chr1_1:51797545-51797564 | Msa0027480:intron | 40.0% | |
| TTGAAAGAGGTTGTGATGGT+GGG | + | chr1_1:51797546-51797565 | Msa0027480:intron | 40.0% | |
| TACAATGCACCATCTACTAG+TGG | - | chr1_1:51797697-51797716 | None:intergenic | 40.0% | |
| TTCGATGTTAATCCGCTACA+TGG | + | chr1_1:51797806-51797825 | Msa0027480:intron | 40.0% | |
| TGCCCTTAAATTCCATGTAG+CGG | - | chr1_1:51797821-51797840 | None:intergenic | 40.0% | |
| !! | GGAATTTAAGGGCATTGTGT+TGG | + | chr1_1:51797827-51797846 | Msa0027480:intron | 40.0% |
| ATCTATGCACTACTAGTAGG+TGG | + | chr1_1:51797949-51797968 | Msa0027480:intron | 40.0% | |
| TGCCCTTAAATTCCATGTAG+TGG | - | chr1_1:51797821-51797840 | None:intergenic | 40.0% | |
| !! | TTAAGGGCATTGTGTTAGGA+AGG | + | chr1_1:51798098-51798117 | Msa0027480:intron | 40.0% |
| !! | TTCTGAAATACCTGAAGAGG+TGG | + | chr1_1:51798199-51798218 | Msa0027480:intron | 40.0% |
| ! | TCTGAAATACCTGAAGAGGT+GGG | + | chr1_1:51798200-51798219 | Msa0027480:intron | 40.0% |
| GAGATGAGCGTTCAATTTAG+AGG | - | chr1_1:51798229-51798248 | None:intergenic | 40.0% | |
| TATCTATCCTATGTAGTGGC+TGG | + | chr1_1:51798484-51798503 | Msa0027480:intron | 40.0% | |
| TTACTTTGTTCAGGGAAGGA+AGG | + | chr1_1:51798692-51798711 | Msa0027480:intron | 40.0% | |
| ATATTGACGACGACTGAGAA+GGG | - | chr1_1:51798727-51798746 | None:intergenic | 40.0% | |
| TATATTGACGACGACTGAGA+AGG | - | chr1_1:51798728-51798747 | None:intergenic | 40.0% | |
| TCTCAGTCGTCGTCAATATA+AGG | + | chr1_1:51798728-51798747 | Msa0027480:CDS | 40.0% | |
| ! | CTTCGTGATTTGATTGGTTC+TGG | + | chr1_1:51798816-51798835 | Msa0027480:CDS | 40.0% |
| GCAGCAGACAAATCATTTCA+TGG | - | chr1_1:51798930-51798949 | None:intergenic | 40.0% | |
| ACTTCAGAATTCACGACGCA+TGG | + | chr1_1:51792789-51792808 | Msa0027480:exon | 45.0% | |
| ! | GAGTGATGATGAGGTGTTTC+CGG | - | chr1_1:51792875-51792894 | None:intergenic | 45.0% |
| GGAAACACCTCATCATCACT+CGG | + | chr1_1:51792874-51792893 | Msa0027480:CDS | 45.0% | |
| TATTTGTGCAGTTGCTACGG+AGG | + | chr1_1:51793348-51793367 | Msa0027480:intron | 45.0% | |
| ATTTGTGCAGTTGCTACGGA+GGG | + | chr1_1:51793349-51793368 | Msa0027480:intron | 45.0% | |
| ! | TACGGAGGGATAAAGTGCTT+CGG | + | chr1_1:51793363-51793382 | Msa0027480:CDS | 45.0% |
| GATGACTACCTGATACAGGT+TGG | + | chr1_1:51793434-51793453 | Msa0027480:intron | 45.0% | |
| !! | CCAGCTTTGAATCTAGGACA+TGG | - | chr1_1:51794170-51794189 | None:intergenic | 45.0% |
| CCATGTCCTAGATTCAAAGC+TGG | + | chr1_1:51794167-51794186 | Msa0027480:CDS | 45.0% | |
| ! | AAGAGAAGGTCAGTGGCTTT+TGG | + | chr1_1:51794642-51794661 | Msa0027480:intron | 45.0% |
| ! | AGAGAAGGTCAGTGGCTTTT+GGG | + | chr1_1:51794643-51794662 | Msa0027480:intron | 45.0% |
| CCAAATTTACACGGTTCCCT+TGG | - | chr1_1:51794761-51794780 | None:intergenic | 45.0% | |
| CCAAGGGAACCGTGTAAATT+TGG | + | chr1_1:51794758-51794777 | Msa0027480:intron | 45.0% | |
| ATCAGTCCTGAAATCGGGTT+GGG | - | chr1_1:51794808-51794827 | None:intergenic | 45.0% | |
| TTTGTTGCAGAAACCAGGTC+GGG | - | chr1_1:51794879-51794898 | None:intergenic | 45.0% | |
| ! | GTTTGTTGCAGAAACCAGGT+CGG | - | chr1_1:51794880-51794899 | None:intergenic | 45.0% |
| CAGATTGAATCGGGGTACAT+GGG | + | chr1_1:51794926-51794945 | Msa0027480:intron | 45.0% | |
| TGGGATACTCCCGTGATATA+TGG | + | chr1_1:51794945-51794964 | Msa0027480:intron | 45.0% | |
| GGGATACTCCCGTGATATAT+GGG | + | chr1_1:51794946-51794965 | Msa0027480:intron | 45.0% | |
| AGGCGTATCCCATATATCAC+GGG | - | chr1_1:51794957-51794976 | None:intergenic | 45.0% | |
| CAGGCGTATCCCATATATCA+CGG | - | chr1_1:51794958-51794977 | None:intergenic | 45.0% | |
| TAGGATACGAAAACAGCCGT+GGG | - | chr1_1:51795022-51795041 | None:intergenic | 45.0% | |
| ATAGGATACGAAAACAGCCG+TGG | - | chr1_1:51795023-51795042 | None:intergenic | 45.0% | |
| !! | CGGCTGTTTTCGTATCCTAT+CGG | + | chr1_1:51795023-51795042 | Msa0027480:intron | 45.0% |
| !! | GGCTGTTTTCGTATCCTATC+GGG | + | chr1_1:51795024-51795043 | Msa0027480:intron | 45.0% |
| TCCTATCGGGATATGTATCG+TGG | + | chr1_1:51795037-51795056 | Msa0027480:intron | 45.0% | |
| CCTATCGGGATATGTATCGT+GGG | + | chr1_1:51795038-51795057 | Msa0027480:intron | 45.0% | |
| CAGTGCTCACTCTTATCACT+TGG | + | chr1_1:51795255-51795274 | Msa0027480:intron | 45.0% | |
| GTGCTCACTCTTATCACTTG+GGG | + | chr1_1:51795257-51795276 | Msa0027480:intron | 45.0% | |
| TGCTCACTCTTATCACTTGG+GGG | + | chr1_1:51795258-51795277 | Msa0027480:CDS | 45.0% | |
| ACTCTTATCACTTGGGGGAA+AGG | + | chr1_1:51795263-51795282 | Msa0027480:CDS | 45.0% | |
| ACTGTCACAACTTTGCTTGG+AGG | + | chr1_1:51795392-51795411 | Msa0027480:intron | 45.0% | |
| AACTGGCGTGTTAGAATCAG+GGG | - | chr1_1:51795643-51795662 | None:intergenic | 45.0% | |
| GAAACTGGCGTGTTAGAATC+AGG | - | chr1_1:51795645-51795664 | None:intergenic | 45.0% | |
| ! | TGGTGCATACTTTTCAGACC+AGG | + | chr1_1:51796115-51796134 | Msa0027480:intron | 45.0% |
| GATATCAGATGGGCACCATA+TGG | - | chr1_1:51797210-51797229 | None:intergenic | 45.0% | |
| ATATCCAACCTCCAATCCCA+TGG | + | chr1_1:51797225-51797244 | Msa0027480:intron | 45.0% | |
| TATCCAACCTCCAATCCCAT+GGG | + | chr1_1:51797226-51797245 | Msa0027480:intron | 45.0% | |
| AATTCTGGCACCAGATCTAG+TGG | - | chr1_1:51797257-51797276 | None:intergenic | 45.0% | |
| AAAGAGGTTGCGACAATGGA+GGG | + | chr1_1:51797571-51797590 | Msa0027480:intron | 45.0% | |
| ATCTGTGCACCACTAGTAGA+TGG | + | chr1_1:51797685-51797704 | Msa0027480:intron | 45.0% | |
| !! | TTAAGGGCATTGTGTTGGGA+TGG | + | chr1_1:51797832-51797851 | Msa0027480:intron | 45.0% |
| !!! | GAGGAAGCATTTTGGCATTC+TGG | + | chr1_1:51797923-51797942 | Msa0027480:intron | 45.0% |
| GAACGCTCATCTCACTTGTT+TGG | + | chr1_1:51798236-51798255 | Msa0027480:intron | 45.0% | |
| CACCACTAGTACAACAGATG+TGG | + | chr1_1:51798425-51798444 | Msa0027480:intron | 45.0% | |
| TGTTTATACCAGTCGGAGTC+TGG | - | chr1_1:51798857-51798876 | None:intergenic | 45.0% | |
| !!! | CAATTTTTTTTATTTATAAA+TGG | + | chr1_1:51799009-51799028 | Msa0027480:three_prime_UTR | 5.0% |
| ! | ATTTTCAGTTCGCCGGCGTT+TGG | - | chr1_1:51792845-51792864 | None:intergenic | 50.0% |
| ! | CGTCGGAATTTTCAGTTCGC+CGG | - | chr1_1:51792852-51792871 | None:intergenic | 50.0% |
| CGAACTGAAAATTCCGACGC+CGG | + | chr1_1:51792853-51792872 | Msa0027480:CDS | 50.0% | |
| ! | GTGTGTACCGAGTGATGATG+AGG | - | chr1_1:51792884-51792903 | None:intergenic | 50.0% |
| GTTGTTCATCCAAGCAGAGC+CGG | + | chr1_1:51793709-51793728 | Msa0027480:intron | 50.0% | |
| CTAGGAGAGGTTGACAACGT+GGG | - | chr1_1:51793788-51793807 | None:intergenic | 50.0% | |
| ACTAGGAGAGGTTGACAACG+TGG | - | chr1_1:51793789-51793808 | None:intergenic | 50.0% | |
| ! | GGATACTGGCATCGAACATG+AGG | + | chr1_1:51794188-51794207 | Msa0027480:CDS | 50.0% |
| ATCTGGCTAATGTCCGGCTT+TGG | + | chr1_1:51794302-51794321 | Msa0027480:intron | 50.0% | |
| TCTGGCTAATGTCCGGCTTT+GGG | + | chr1_1:51794303-51794322 | Msa0027480:intron | 50.0% | |
| CATGAGCATTCTCCCAAAGC+CGG | - | chr1_1:51794318-51794337 | None:intergenic | 50.0% | |
| TGTCACATAAACCCGACCCA+AGG | + | chr1_1:51794741-51794760 | Msa0027480:intron | 50.0% | |
| GTCACATAAACCCGACCCAA+GGG | + | chr1_1:51794742-51794761 | Msa0027480:intron | 50.0% | |
| TTTACACGGTTCCCTTGGGT+CGG | - | chr1_1:51794756-51794775 | None:intergenic | 50.0% | |
| GATCAGTCCTGAAATCGGGT+TGG | - | chr1_1:51794809-51794828 | None:intergenic | 50.0% | |
| CCATGTACCCCGATTCAATC+TGG | - | chr1_1:51794928-51794947 | None:intergenic | 50.0% | |
| CCAGATTGAATCGGGGTACA+TGG | + | chr1_1:51794925-51794944 | Msa0027480:intron | 50.0% | |
| CGTGATATATGGGATACGCC+TGG | + | chr1_1:51794956-51794975 | Msa0027480:intron | 50.0% | |
| ACCCTGATACGTATTGCCCA+CGG | + | chr1_1:51795003-51795022 | Msa0027480:intron | 50.0% | |
| CCCACGATACATATCCCGAT+AGG | - | chr1_1:51795041-51795060 | None:intergenic | 50.0% | |
| ATCACTTGGGGGAAAGGTGA+AGG | + | chr1_1:51795269-51795288 | Msa0027480:CDS | 50.0% | |
| GAGTTGGGGTTTGTGGAAGT+AGG | - | chr1_1:51797061-51797080 | None:intergenic | 50.0% | |
| ! | GCATTTTGCTTCAGAGGGTG+CGG | - | chr1_1:51797146-51797165 | None:intergenic | 50.0% |
| ! | CTCAGGAGCCACTTTCTAGA+AGG | - | chr1_1:51797443-51797462 | None:intergenic | 50.0% |
| CTAGAAAGTGGCTCCTGAGA+TGG | + | chr1_1:51797444-51797463 | Msa0027480:intron | 50.0% | |
| !! | GTTGTGATGGTGGGAGAAAG+AGG | + | chr1_1:51797555-51797574 | Msa0027480:intron | 50.0% |
| GGAGAAAGAGGTTGCGACAA+TGG | + | chr1_1:51797567-51797586 | Msa0027480:intron | 50.0% | |
| GAAAGAGGTTGCGACAATGG+AGG | + | chr1_1:51797570-51797589 | Msa0027480:intron | 50.0% | |
| GAGGGTGGTAGCAAAGAGTT+GGG | + | chr1_1:51797589-51797608 | Msa0027480:intron | 50.0% | |
| AAAGAGTTGGGAGAGACCAG+AGG | + | chr1_1:51797601-51797620 | Msa0027480:intron | 50.0% | |
| AAGAGTTGGGAGAGACCAGA+GGG | + | chr1_1:51797602-51797621 | Msa0027480:intron | 50.0% | |
| GAAGGTAAAGGGAGGGTAGA+AGG | + | chr1_1:51797637-51797656 | Msa0027480:intron | 50.0% | |
| TGGTGCACAGATACACCAGA+GGG | - | chr1_1:51797677-51797696 | None:intergenic | 50.0% | |
| CATTGTGTTGGGATGGAGGA+GGG | + | chr1_1:51797839-51797858 | Msa0027480:intron | 50.0% | |
| AAAGAGTTGGGAGAGACCAG+AGG | + | chr1_1:51797601-51797620 | Msa0027480:intron | 50.0% | |
| AAGAGTTGGGAGAGACCAGA+GGG | + | chr1_1:51797602-51797621 | Msa0027480:intron | 50.0% | |
| !!! | GGTGGAAGGAGGAAGCATTT+TGG | + | chr1_1:51797915-51797934 | Msa0027480:intron | 50.0% |
| !! | AGGGCATTGTGTTAGGAAGG+AGG | + | chr1_1:51798101-51798120 | Msa0027480:intron | 50.0% |
| GCATTGTGTTAGGAAGGAGG+AGG | + | chr1_1:51798104-51798123 | Msa0027480:intron | 50.0% | |
| GGCCACATCTGTTGTACTAG+TGG | - | chr1_1:51798430-51798449 | None:intergenic | 50.0% | |
| CTATCCTATGTAGTGGCTGG+TGG | + | chr1_1:51798487-51798506 | Msa0027480:intron | 50.0% | |
| CTATCCACCAGCCACTACAT+AGG | - | chr1_1:51798494-51798513 | None:intergenic | 50.0% | |
| ! | GGAGATGATGTTGGCCGTTT+TGG | + | chr1_1:51798749-51798768 | Msa0027480:CDS | 50.0% |
| !! | CATCCAAAGGCACCAAACGC+CGG | + | chr1_1:51792830-51792849 | Msa0027480:CDS | 55.0% |
| ! | TGATGAGGTGTTTCCGGCGT+CGG | - | chr1_1:51792869-51792888 | None:intergenic | 55.0% |
| CCATTTACTCCGGCTCTGCT+TGG | - | chr1_1:51793721-51793740 | None:intergenic | 55.0% | |
| CCAAGCAGAGCCGGAGTAAA+TGG | + | chr1_1:51793718-51793737 | Msa0027480:intron | 55.0% | |
| !! | GAAGGCACTGGAGTAGCACT+CGG | - | chr1_1:51793924-51793943 | None:intergenic | 55.0% |
| TTACACGGTTCCCTTGGGTC+GGG | - | chr1_1:51794755-51794774 | None:intergenic | 55.0% | |
| GCAAAGCCCAACCCGATTTC+AGG | + | chr1_1:51794799-51794818 | Msa0027480:intron | 55.0% | |
| GCCGTGGGCAATACGTATCA+GGG | - | chr1_1:51795007-51795026 | None:intergenic | 55.0% | |
| AGCCGTGGGCAATACGTATC+AGG | - | chr1_1:51795008-51795027 | None:intergenic | 55.0% | |
| GAGAGAGGAGTTGGGGTTTG+TGG | - | chr1_1:51797068-51797087 | None:intergenic | 55.0% | |
| TGAAGGGGGTGAAAGCTGGA+GGG | - | chr1_1:51797092-51797111 | None:intergenic | 55.0% | |
| ATGAAGGGGGTGAAAGCTGG+AGG | - | chr1_1:51797093-51797112 | None:intergenic | 55.0% | |
| GTGATGAAGGGGGTGAAAGC+TGG | - | chr1_1:51797096-51797115 | None:intergenic | 55.0% | |
| !! | GATCTAGTGGTGCCACCCAT+GGG | - | chr1_1:51797244-51797263 | None:intergenic | 55.0% |
| !! | AGATCTAGTGGTGCCACCCA+TGG | - | chr1_1:51797245-51797264 | None:intergenic | 55.0% |
| ATGGGTGGCACCACTAGATC+TGG | + | chr1_1:51797244-51797263 | Msa0027480:intron | 55.0% | |
| AGTGGCTCCTGAGATGGCTT+AGG | + | chr1_1:51797450-51797469 | Msa0027480:intron | 55.0% | |
| GGAGGGTGGTAGCAAAGAGT+TGG | + | chr1_1:51797588-51797607 | Msa0027480:intron | 55.0% | |
| GAGCTGGGAAGGTAAAGGGA+GGG | + | chr1_1:51797630-51797649 | Msa0027480:intron | 55.0% | |
| GGTAAAGGGAGGGTAGAAGG+AGG | + | chr1_1:51797640-51797659 | Msa0027480:intron | 55.0% | |
| !! | GAGGAAGCATTTCACCCCTC+TGG | + | chr1_1:51797659-51797678 | Msa0027480:intron | 55.0% |
| GGTGCACAGATACACCAGAG+GGG | - | chr1_1:51797676-51797695 | None:intergenic | 55.0% | |
| GTGGTGCACAGATACACCAG+AGG | - | chr1_1:51797678-51797697 | None:intergenic | 55.0% | |
| !! | AGGGCATTGTGTTGGGATGG+AGG | + | chr1_1:51797835-51797854 | Msa0027480:intron | 55.0% |
| GCATTGTGTTGGGATGGAGG+AGG | + | chr1_1:51797838-51797857 | Msa0027480:intron | 55.0% | |
| GAGGGTGGCAGCAAAGAGTT+GGG | + | chr1_1:51797857-51797876 | Msa0027480:intron | 55.0% | |
| GTGAGGGAGCTGGTAAGGTT+GGG | + | chr1_1:51797892-51797911 | Msa0027480:intron | 55.0% | |
| TGAGGGAGCTGGTAAGGTTG+GGG | + | chr1_1:51797893-51797912 | Msa0027480:intron | 55.0% | |
| TAGGAAGGAGGAGGTGAGTG+AGG | + | chr1_1:51798113-51798132 | Msa0027480:intron | 55.0% | |
| AAGGAGGAGGTGAGTGAGGT+GGG | + | chr1_1:51798117-51798136 | Msa0027480:intron | 55.0% | |
| TAGAGGCTACCCACCTCTTC+AGG | - | chr1_1:51798212-51798231 | None:intergenic | 55.0% | |
| ! | AGTGGCTGGTGGATAGTCTG+TGG | + | chr1_1:51798498-51798517 | Msa0027480:intron | 55.0% |
| ! | GTGGCTGGTGGATAGTCTGT+GGG | + | chr1_1:51798499-51798518 | Msa0027480:intron | 55.0% |
| ! | TGGCTGGTGGATAGTCTGTG+GGG | + | chr1_1:51798500-51798519 | Msa0027480:intron | 55.0% |
| AGATCTGACCAGACTCCGAC+TGG | + | chr1_1:51798846-51798865 | Msa0027480:CDS | 55.0% | |
| TGGAGGGGGAGAGAGGAGTT+GGG | - | chr1_1:51797076-51797095 | None:intergenic | 60.0% | |
| TGAAAGCTGGAGGGGGAGAG+AGG | - | chr1_1:51797083-51797102 | None:intergenic | 60.0% | |
| AAGGGGGTGAAAGCTGGAGG+GGG | - | chr1_1:51797090-51797109 | None:intergenic | 60.0% | |
| GAAGGGGGTGAAAGCTGGAG+GGG | - | chr1_1:51797091-51797110 | None:intergenic | 60.0% | |
| CCACCCATGGGATTGGAGGT+TGG | - | chr1_1:51797232-51797251 | None:intergenic | 60.0% | |
| CCAACCTCCAATCCCATGGG+TGG | + | chr1_1:51797229-51797248 | Msa0027480:intron | 60.0% | |
| !! | AGTGGTGCCACCCATGGGAT+TGG | - | chr1_1:51797239-51797258 | None:intergenic | 60.0% |
| GAGGTTGCGACAATGGAGGG+TGG | + | chr1_1:51797574-51797593 | Msa0027480:intron | 60.0% | |
| AGTTGGGAGAGACCAGAGGG+CGG | + | chr1_1:51797605-51797624 | Msa0027480:intron | 60.0% | |
| GGGGGAGCTGGGAAGGTAAA+GGG | + | chr1_1:51797626-51797645 | Msa0027480:intron | 60.0% | |
| GGAGCTGGGAAGGTAAAGGG+AGG | + | chr1_1:51797629-51797648 | Msa0027480:intron | 60.0% | |
| TGTGTTGGGATGGAGGAGGG+TGG | + | chr1_1:51797842-51797861 | Msa0027480:intron | 60.0% | |
| GGAGGGTGGCAGCAAAGAGT+TGG | + | chr1_1:51797856-51797875 | Msa0027480:intron | 60.0% | |
| TTGGGAGAGACCAGAGGGTG+AGG | + | chr1_1:51797875-51797894 | Msa0027480:intron | 60.0% | |
| TGGGAGAGACCAGAGGGTGA+GGG | + | chr1_1:51797876-51797895 | Msa0027480:intron | 60.0% | |
| TTACCAGCTCCCTCACCCTC+TGG | - | chr1_1:51797888-51797907 | None:intergenic | 60.0% | |
| AGAGGGTGAGGGAGCTGGTA+AGG | + | chr1_1:51797887-51797906 | Msa0027480:intron | 60.0% | |
| GGTGAGGGAGCTGGTAAGGT+TGG | + | chr1_1:51797891-51797910 | Msa0027480:intron | 60.0% | |
| GAGGGAGCTGGTAAGGTTGG+GGG | + | chr1_1:51797894-51797913 | Msa0027480:intron | 60.0% | |
| CTGGTAAGGTTGGGGGTGGA+AGG | + | chr1_1:51797901-51797920 | Msa0027480:intron | 60.0% | |
| GTAAGGTTGGGGGTGGAAGG+AGG | + | chr1_1:51797904-51797923 | Msa0027480:intron | 60.0% | |
| GAAGGAGGAGGTGAGTGAGG+TGG | + | chr1_1:51798116-51798135 | Msa0027480:intron | 60.0% | |
| AGGAGGTGAGTGAGGTGGGT+GGG | + | chr1_1:51798121-51798140 | Msa0027480:intron | 60.0% | |
| !! | TCGCCGGCGTTTGGTGCCTT+TGG | - | chr1_1:51792836-51792855 | None:intergenic | 65.0% |
| GGAGGGGGAGAGAGGAGTTG+GGG | - | chr1_1:51797075-51797094 | None:intergenic | 65.0% | |
| CTGGAGGGGGAGAGAGGAGT+TGG | - | chr1_1:51797077-51797096 | None:intergenic | 65.0% | |
| ! | GGTGCCACCCATGGGATTGG+AGG | - | chr1_1:51797236-51797255 | None:intergenic | 65.0% |
| GTTGGGAGAGACCAGAGGGC+GGG | + | chr1_1:51797606-51797625 | Msa0027480:intron | 65.0% | |
| TTGGGAGAGACCAGAGGGCG+GGG | + | chr1_1:51797607-51797626 | Msa0027480:intron | 65.0% | |
| CGGGGGAGCTGGGAAGGTAA+AGG | + | chr1_1:51797625-51797644 | Msa0027480:intron | 65.0% | |
| AGACCAGAGGGTGAGGGAGC+TGG | + | chr1_1:51797882-51797901 | Msa0027480:intron | 65.0% | |
| GGAGCTGGTAAGGTTGGGGG+TGG | + | chr1_1:51797897-51797916 | Msa0027480:intron | 65.0% | |
| GAGGAGGTGAGTGAGGTGGG+TGG | + | chr1_1:51798120-51798139 | Msa0027480:intron | 65.0% | |
| ! | GTGGGTTGCGCAACCCGACC+TGG | + | chr1_1:51794863-51794882 | Msa0027480:intron | 70.0% |
| TGGGAGAGACCAGAGGGCGG+GGG | + | chr1_1:51797608-51797627 | Msa0027480:intron | 70.0% | |
| AGACCAGAGGGCGGGGGAGC+TGG | + | chr1_1:51797614-51797633 | Msa0027480:intron | 75.0% | |
| GACCAGAGGGCGGGGGAGCT+GGG | + | chr1_1:51797615-51797634 | Msa0027480:intron | 75.0% | |
| TTCCCAGCTCCCCCGCCCTC+TGG | - | chr1_1:51797620-51797639 | None:intergenic | 75.0% | |
| AGAGGGCGGGGGAGCTGGGA+AGG | + | chr1_1:51797619-51797638 | Msa0027480:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51792774 | 51799133 | 51792774 | ID=Msa0027480;Name=Msa0027480 |
| chr1_1 | mRNA | 51792774 | 51799133 | 51792774 | ID=Msa0027480-mRNA-1;Parent=Msa0027480;Name=Msa0027480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=34|1|1|1|0.71|1|8|237|265 |
| chr1_1 | exon | 51792774 | 51792895 | 51792774 | ID=Msa0027480-mRNA-1:exon:15235;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51792973 | 51793046 | 51792973 | ID=Msa0027480-mRNA-1:exon:15236;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51793135 | 51793215 | 51793135 | ID=Msa0027480-mRNA-1:exon:15237;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51793359 | 51793451 | 51793359 | ID=Msa0027480-mRNA-1:exon:15238;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51794096 | 51794215 | 51794096 | ID=Msa0027480-mRNA-1:exon:15239;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51795258 | 51795329 | 51795258 | ID=Msa0027480-mRNA-1:exon:15240;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51796132 | 51796209 | 51796132 | ID=Msa0027480-mRNA-1:exon:15241;Parent=Msa0027480-mRNA-1 |
| chr1_1 | exon | 51798705 | 51799133 | 51798705 | ID=Msa0027480-mRNA-1:exon:15242;Parent=Msa0027480-mRNA-1 |
| chr1_1 | five_prime_UTR | 51792774 | 51792807 | 51792774 | ID=Msa0027480-mRNA-1:five_prime_utr;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51792808 | 51792895 | 51792808 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51792973 | 51793046 | 51792973 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51793135 | 51793215 | 51793135 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51793359 | 51793451 | 51793359 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51794096 | 51794215 | 51794096 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51795258 | 51795329 | 51795258 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51796132 | 51796209 | 51796132 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | CDS | 51798705 | 51798896 | 51798705 | ID=Msa0027480-mRNA-1:cds;Parent=Msa0027480-mRNA-1 |
| chr1_1 | three_prime_UTR | 51798897 | 51799133 | 51798897 | ID=Msa0027480-mRNA-1:three_prime_utr;Parent=Msa0027480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
