AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0487910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487910 MtrunA17_Chr3g0077201 92.793 333 12 6 1 332 1 322 0.0 585
Msa0487910 MtrunA17_Chr7g0218101 44.177 249 124 7 91 331 47 288 8.89e-57 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0487910 AT1G33780.1 65.370 257 76 4 75 331 70 313 2.44e-112 329
Msa0487910 AT3G29240.1 41.803 244 120 5 104 331 75 312 7.92e-54 179
Msa0487910 AT3G29240.2 41.803 244 120 5 104 331 75 312 7.92e-54 179

Find 96 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGTCTTCTTTCTTTCT+TGG 0.121045 3_4:-7023591 Msa0487910:intron
CCAAACCTCTTGAAACAAAA+TGG 0.155587 3_4:-7021873 Msa0487910:CDS
TCTGATTGTTCTCTGCATTT+TGG 0.182538 3_4:-7021637 Msa0487910:CDS
TAGCTCAAGTTTGCTGTATA+AGG 0.253519 3_4:-7021371 Msa0487910:CDS
CATGATTTCAGTTTCTTTGT+TGG 0.269750 3_4:-7021463 Msa0487910:CDS
AAAATCAATAAAAGTGAATA+TGG 0.277350 3_4:-7023411 Msa0487910:exon
TACTCGAATGTCAGATAATT+AGG 0.284320 3_4:-7021171 Msa0487910:three_prime_UTR
CACCCACAAGAAGGGCCTTT+TGG 0.291430 3_4:-7021736 Msa0487910:CDS
GGAGAGAAGTTGAAGCTTCC+AGG 0.302782 3_4:-7021577 Msa0487910:CDS
AGTTTCTTTGTTGGTTATGC+TGG 0.346630 3_4:-7021454 Msa0487910:CDS
ATCTGAATTATTAGTACCTA+TGG 0.354082 3_4:+7021254 None:intergenic
GCTGGTATTGCTGTGGCTTC+CGG 0.377196 3_4:+7021282 None:intergenic
GTAGTCCCTGGTCTATATTA+TGG 0.381600 3_4:-7021544 Msa0487910:CDS
CAGATTCTTCTGAAGGTTTG+TGG 0.391415 3_4:-7021342 Msa0487910:CDS
GTTGAGAAAACATTGATTCA+TGG 0.391724 3_4:+7020993 None:intergenic
TTAGTACCTATGGGTCTTGC+TGG 0.399257 3_4:+7021264 None:intergenic
CCGTGGTGGTCATGTTAATC+TGG 0.405342 3_4:-7022901 Msa0487910:CDS
CAGAATAAAATGAATTGGTT+GGG 0.406618 3_4:+7023351 None:intergenic
CCCGCCTTCTTTGTGTGTAT+CGG 0.407328 3_4:+7021909 None:intergenic
GTTATTCTCCTTCTAAGATC+TGG 0.410814 3_4:-7021766 Msa0487910:CDS
CCAGTCTCAGGTACAGGAAT+AGG 0.419654 3_4:+7021844 None:intergenic
CAAACCTCTTGAAACAAAAT+GGG 0.422046 3_4:-7021872 Msa0487910:CDS
TGCTTCATATCTTGTCCCTA+GGG 0.430039 3_4:+7020949 None:intergenic
GTCTAGTTCCAGATCTTAGA+AGG 0.431238 3_4:+7021758 None:intergenic
TGTTCCAGAATAAAATGAAT+TGG 0.441229 3_4:+7023346 None:intergenic
AGATTCTTCTGAAGGTTTGT+GGG 0.444169 3_4:-7021341 Msa0487910:CDS
TTCCAAAAGGCCCTTCTTGT+GGG 0.447471 3_4:+7021734 None:intergenic
TTAGCAGTGACAACAAGAAA+TGG 0.448377 3_4:+7023257 None:intergenic
AATCACGGCGGAGGTGGAGG+AGG 0.449102 3_4:-7023203 Msa0487910:CDS
CACGGCGGAGGTGGAGGAGG+AGG 0.453111 3_4:-7023200 Msa0487910:CDS
AACAATAATCACGGCGGAGG+TGG 0.457273 3_4:-7023209 Msa0487910:CDS
GGCGGAGGTGGAGGAGGAGG+AGG 0.457665 3_4:-7023197 Msa0487910:intron
TTGCTTCATATCTTGTCCCT+AGG 0.458293 3_4:+7020948 None:intergenic
TTGTTTACAGTTAATGATCT+CGG 0.459996 3_4:+7023295 None:intergenic
TGCAGCAGGGCTTGTGAAGA+AGG 0.465727 3_4:-7021500 Msa0487910:CDS
GTGGCTACCGACAAGCTTGA+TGG 0.470507 3_4:-7021811 Msa0487910:CDS
CCAGAATAAAATGAATTGGT+TGG 0.476573 3_4:+7023350 None:intergenic
CCTATTCCTGTACCTGAGAC+TGG 0.480085 3_4:-7021844 Msa0487910:CDS
AATAATCACGGCGGAGGTGG+AGG 0.494325 3_4:-7023206 Msa0487910:CDS
AACTGTTTAGATGATGCAGC+AGG 0.499367 3_4:-7021514 Msa0487910:CDS
TGGTTATGCTGGATGGCAAA+TGG 0.500950 3_4:-7021443 Msa0487910:CDS
ACAAGTACACAGCCAGTCTC+AGG 0.508596 3_4:+7021832 None:intergenic
ATTCCAAAAGGCCCTTCTTG+TGG 0.511329 3_4:+7021733 None:intergenic
TGTTTAATCTTCTTGTGAAG+AGG 0.512942 3_4:+7021697 None:intergenic
GGGACTACCTCTTCAAATCC+TGG 0.516956 3_4:+7021559 None:intergenic
TAGCAGTGACAACAAGAAAT+GGG 0.520121 3_4:+7023258 None:intergenic
GAGAATAACAGTTCTTTCAA+AGG 0.520498 3_4:+7021780 None:intergenic
GTGGTCATGTTAATCTGGAT+TGG 0.533501 3_4:-7022896 Msa0487910:CDS
GCTTTGACAGATTCTTCTGA+AGG 0.533529 3_4:-7021349 Msa0487910:CDS
CGAGCTCCATAATATAGACC+AGG 0.539007 3_4:+7021538 None:intergenic
TCTTTGTTGGTTATGCTGGA+TGG 0.540720 3_4:-7021450 Msa0487910:CDS
TAAACTATATAGAGATGAGC+TGG 0.545843 3_4:-7022859 Msa0487910:intron
CTTCTTGTTCTTCTTGCCGC+CGG 0.547442 3_4:+7023232 None:intergenic
CCGATACACACAAAGAAGGC+GGG 0.549826 3_4:-7021909 Msa0487910:CDS
GCGAATACCATCAAGCTTGT+CGG 0.551494 3_4:+7021804 None:intergenic
TCTGAATTATTAGTACCTAT+GGG 0.556246 3_4:+7021255 None:intergenic
GCAGCAGGGCTTGTGAAGAA+GGG 0.558137 3_4:-7021499 Msa0487910:CDS
ACACAGCCAGTCTCAGGTAC+AGG 0.559250 3_4:+7021838 None:intergenic
ATGAAATTGAGTCAGAGTAT+TGG 0.561047 3_4:-7021408 Msa0487910:CDS
ATGGGTACGCAGGATTGAGC+CGG 0.561903 3_4:-7021301 Msa0487910:exon
GCAATACCAGCAAGACCCAT+AGG 0.564699 3_4:-7021270 Msa0487910:three_prime_UTR
GGAACTAGACACCCACAAGA+AGG 0.566894 3_4:-7021745 Msa0487910:CDS
TGAGACTGGCTGTGTACTTG+TGG 0.571797 3_4:-7021830 Msa0487910:CDS
GGATTTGAAGAGGTAGTCCC+TGG 0.577229 3_4:-7021556 Msa0487910:CDS
AATTGATGCATGTAAAATGT+TGG 0.577452 3_4:-7021222 Msa0487910:three_prime_UTR
GGGTCTTGCTGGTATTGCTG+TGG 0.585429 3_4:+7021275 None:intergenic
TTCTTCTGAAGGTTTGTGGG+AGG 0.586761 3_4:-7021338 Msa0487910:CDS
CGATTGATGACAATTCCAAA+AGG 0.587218 3_4:+7021721 None:intergenic
CAGCAGGGCTTGTGAAGAAG+GGG 0.599227 3_4:-7021498 Msa0487910:CDS
AAGAACAATAATCACGGCGG+AGG 0.604640 3_4:-7023212 Msa0487910:CDS
ATGCAGAGAACAATCAGAGA+AGG 0.607603 3_4:+7021642 None:intergenic
TGACAACAAGAAATGGGATG+CGG 0.608709 3_4:+7023264 None:intergenic
GAAGCTTCCAGGATTTGAAG+AGG 0.610660 3_4:-7021566 Msa0487910:CDS
GAACTAGACACCCACAAGAA+GGG 0.612099 3_4:-7021744 Msa0487910:CDS
CAGAGAACAATCAGAGAAGG+TGG 0.616018 3_4:+7021645 None:intergenic
GATGCCGATACACACAAAGA+AGG 0.619105 3_4:-7021913 Msa0487910:CDS
TTTGCAACTTATGGGTACGC+AGG 0.620393 3_4:-7021311 Msa0487910:CDS
CTTGTTGTCACTGCTAACGC+CGG 0.621404 3_4:-7023251 Msa0487910:CDS
AACAAGAAGAACAATAATCA+CGG 0.628711 3_4:-7023218 Msa0487910:CDS
CGATACACACAAAGAAGGCG+GGG 0.630007 3_4:-7021908 Msa0487910:CDS
GCCGATACACACAAAGAAGG+CGG 0.635205 3_4:-7021910 Msa0487910:CDS
ACAAAGAAACTGAAATCATG+AGG 0.637763 3_4:+7021466 None:intergenic
CAACAAGAAATGGGATGCGG+CGG 0.642061 3_4:+7023267 None:intergenic
TGAGTCAGAGTATTGGTATG+TGG 0.643034 3_4:-7021401 Msa0487910:CDS
GGTGACCAGTCTATTCCAGA+AGG 0.645000 3_4:-7022972 Msa0487910:CDS
ACTGTTTAGATGATGCAGCA+GGG 0.653857 3_4:-7021513 Msa0487910:CDS
GTTGTCACTGCTAACGCCGG+CGG 0.656759 3_4:-7023248 Msa0487910:CDS
ATAGAAAACTAAAAGCAAGA+CGG 0.665000 3_4:+7021136 None:intergenic
GAGCTCCATAATATAGACCA+GGG 0.684906 3_4:+7021539 None:intergenic
TTTACAGTTAATGATCTCGG+CGG 0.719903 3_4:+7023298 None:intergenic
CCAGATTAACATGACCACCA+CGG 0.729731 3_4:+7022901 None:intergenic
TTCTCAACCTATGAACAACG+TGG 0.739052 3_4:-7020978 Msa0487910:three_prime_UTR
TCTCAGAATGAGAACCGTGG+TGG 0.747290 3_4:-7022915 Msa0487910:CDS
AACTCTCAGAATGAGAACCG+TGG 0.749394 3_4:-7022918 Msa0487910:CDS
AAGAAGAACAATAATCACGG+CGG 0.784381 3_4:-7023215 Msa0487910:CDS
AAAGTGAATATGGATCTGTG+TGG 0.831813 3_4:-7023401 Msa0487910:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAAAATAGTTGAT+TGG + chr3_4:7021060-7021079 None:intergenic 10.0%
!! AAAATCAATAAAAGTGAATA+TGG - chr3_4:7021172-7021191 Msa0487910:three_prime_UTR 15.0%
!!! TTTTAAAAGCATAGTAAAAT+TGG + chr3_4:7021501-7021520 None:intergenic 15.0%
!! TTATACATGATACATAATTA+TGG - chr3_4:7021998-7022017 Msa0487910:intron 15.0%
!!! GATTTGTATCATTTTATTTA+TGG - chr3_4:7022296-7022315 Msa0487910:intron 15.0%
!! TTAAGGATTTATACAATAAA+TGG - chr3_4:7022390-7022409 Msa0487910:intron 15.0%
!!! TGAAAACATATTTGAAATTA+TGG - chr3_4:7022426-7022445 Msa0487910:intron 15.0%
!!! ATATTTGAAATTATGGAAAA+CGG - chr3_4:7022433-7022452 Msa0487910:intron 15.0%
!! TATCGTCTAATGATTAATAT+TGG - chr3_4:7022245-7022264 Msa0487910:intron 20.0%
!!! GTTACTAAATCATGATTTTT+AGG + chr3_4:7022919-7022938 None:intergenic 20.0%
!!! TTTTAGTTTTCTATCAATAG+AGG - chr3_4:7023456-7023475 Msa0487910:intron 20.0%
! TGATAATAATTCAACACGAT+TGG + chr3_4:7021138-7021157 None:intergenic 25.0%
! CAGAATAAAATGAATTGGTT+GGG + chr3_4:7021235-7021254 None:intergenic 25.0%
! TGTTCCAGAATAAAATGAAT+TGG + chr3_4:7021240-7021259 None:intergenic 25.0%
! TTGTTTACAGTTAATGATCT+CGG + chr3_4:7021291-7021310 None:intergenic 25.0%
! AACAAGAAGAACAATAATCA+CGG - chr3_4:7021365-7021384 Msa0487910:CDS 25.0%
! CTTAACTATTGGACTTATAT+GGG + chr3_4:7021924-7021943 None:intergenic 25.0%
! TCTTAACTATTGGACTTATA+TGG + chr3_4:7021925-7021944 None:intergenic 25.0%
! ATATAAGTCCAATAGTTAAG+AGG - chr3_4:7021924-7021943 Msa0487910:CDS 25.0%
! GAGAGACTAAAAAAAGTTAT+AGG - chr3_4:7021951-7021970 Msa0487910:intron 25.0%
! AAAAAGTTATAGGAAGTCAA+TGG - chr3_4:7021961-7021980 Msa0487910:intron 25.0%
! AATCATACTTGATAGATAGT+TGG - chr3_4:7022129-7022148 Msa0487910:intron 25.0%
! TTAATGACAAGTTCATCAAA+AGG + chr3_4:7022165-7022184 None:intergenic 25.0%
! ACCAAGTTATAGAAAAATGA+AGG - chr3_4:7022270-7022289 Msa0487910:intron 25.0%
! CCAAGTTATAGAAAAATGAA+GGG - chr3_4:7022271-7022290 Msa0487910:intron 25.0%
! CTTAATAACAAGTACAAACA+AGG + chr3_4:7022375-7022394 None:intergenic 25.0%
!!! CTTGTTTGTACTTGTTATTA+AGG - chr3_4:7022373-7022392 Msa0487910:intron 25.0%
! ATAGATACATAGAATGCAAA+AGG + chr3_4:7022506-7022525 None:intergenic 25.0%
! TCTGAATTATTAGTACCTAT+GGG + chr3_4:7023331-7023350 None:intergenic 25.0%
! ATCTGAATTATTAGTACCTA+TGG + chr3_4:7023332-7023351 None:intergenic 25.0%
! AATTGATGCATGTAAAATGT+TGG - chr3_4:7023361-7023380 Msa0487910:CDS 25.0%
! ATAGAAAACTAAAAGCAAGA+CGG + chr3_4:7023450-7023469 None:intergenic 25.0%
TCTTTGTCTTCTTTCTTTCT+TGG - chr3_4:7020992-7021011 Msa0487910:three_prime_UTR 30.0%
CCAGAATAAAATGAATTGGT+TGG + chr3_4:7021236-7021255 None:intergenic 30.0%
! CCAACCAATTCATTTTATTC+TGG - chr3_4:7021233-7021252 Msa0487910:three_prime_UTR 30.0%
AGATTAATCAACAACACAAC+AGG + chr3_4:7021576-7021595 None:intergenic 30.0%
GTTGATTAATCTAACCTTAC+AGG - chr3_4:7021584-7021603 Msa0487910:CDS 30.0%
TAATCTAACCTTACAGGTAA+TGG - chr3_4:7021590-7021609 Msa0487910:CDS 30.0%
!!! CCATTATTATTTTTGCCTTC+TGG + chr3_4:7021629-7021648 None:intergenic 30.0%
CCAGAAGGCAAAAATAATAA+TGG - chr3_4:7021626-7021645 Msa0487910:CDS 30.0%
TAAACTATATAGAGATGAGC+TGG - chr3_4:7021724-7021743 Msa0487910:CDS 30.0%
GAATGAAGTTATTCCAATTC+AGG + chr3_4:7021837-7021856 None:intergenic 30.0%
TCATTCCATTGTAGAAAAGA+TGG - chr3_4:7021851-7021870 Msa0487910:CDS 30.0%
!! CCCTTCATTTTTCTATAACT+TGG + chr3_4:7022274-7022293 None:intergenic 30.0%
!! CATTTTATTTATGGCTCGTT+TGG - chr3_4:7022305-7022324 Msa0487910:intron 30.0%
ATTGATGTAGAAGCTACTAT+TGG - chr3_4:7022545-7022564 Msa0487910:intron 30.0%
CAAACCTCTTGAAACAAAAT+GGG - chr3_4:7022711-7022730 Msa0487910:intron 30.0%
GAGAATAACAGTTCTTTCAA+AGG + chr3_4:7022806-7022825 None:intergenic 30.0%
TGTTTAATCTTCTTGTGAAG+AGG + chr3_4:7022889-7022908 None:intergenic 30.0%
!! AGCATGTTTTTGCTAAAATC+AGG - chr3_4:7022985-7023004 Msa0487910:intron 30.0%
ACAAAGAAACTGAAATCATG+AGG + chr3_4:7023120-7023139 None:intergenic 30.0%
CATGATTTCAGTTTCTTTGT+TGG - chr3_4:7023120-7023139 Msa0487910:intron 30.0%
ATGAAATTGAGTCAGAGTAT+TGG - chr3_4:7023175-7023194 Msa0487910:intron 30.0%
TACTCGAATGTCAGATAATT+AGG - chr3_4:7023412-7023431 Msa0487910:exon 30.0%
!! GTTGAGAAAACATTGATTCA+TGG + chr3_4:7023593-7023612 None:intergenic 30.0%
! ATGAAAGTGACGTTTTCGAA+AGG + chr3_4:7020972-7020991 None:intergenic 35.0%
AAAGTGAATATGGATCTGTG+TGG - chr3_4:7021182-7021201 Msa0487910:three_prime_UTR 35.0%
TTTACAGTTAATGATCTCGG+CGG + chr3_4:7021288-7021307 None:intergenic 35.0%
TAGCAGTGACAACAAGAAAT+GGG + chr3_4:7021328-7021347 None:intergenic 35.0%
TTAGCAGTGACAACAAGAAA+TGG + chr3_4:7021329-7021348 None:intergenic 35.0%
AAGAAGAACAATAATCACGG+CGG - chr3_4:7021368-7021387 Msa0487910:CDS 35.0%
!! AAAATTGGTTTGCAGGTTGA+TGG + chr3_4:7021486-7021505 None:intergenic 35.0%
!! GCATAGTAAAATTGGTTTGC+AGG + chr3_4:7021493-7021512 None:intergenic 35.0%
TTAATCAACAACACAACAGG+CGG + chr3_4:7021573-7021592 None:intergenic 35.0%
! CTCTACCATCTTTTCTACAA+TGG + chr3_4:7021859-7021878 None:intergenic 35.0%
TCTCTCTACCTCTTAACTAT+TGG + chr3_4:7021935-7021954 None:intergenic 35.0%
CAATTAACCTTTATCCCACT+AGG + chr3_4:7022052-7022071 None:intergenic 35.0%
GGGATAAAGGTTAATTGTCA+AGG - chr3_4:7022055-7022074 Msa0487910:intron 35.0%
! ATTAATCTAAGATGCCTCCT+TGG - chr3_4:7022180-7022199 Msa0487910:intron 35.0%
TAGACGATAAACACCTCAAT+GGG + chr3_4:7022234-7022253 None:intergenic 35.0%
TTAGACGATAAACACCTCAA+TGG + chr3_4:7022235-7022254 None:intergenic 35.0%
TAGAATGCAAAAGGCGAAAA+AGG + chr3_4:7022497-7022516 None:intergenic 35.0%
CCTGTATTGCTTCTTAGATA+TGG + chr3_4:7022581-7022600 None:intergenic 35.0%
CCATATCTAAGAAGCAATAC+AGG - chr3_4:7022578-7022597 Msa0487910:intron 35.0%
!! CCATTTTGTTTCAAGAGGTT+TGG + chr3_4:7022713-7022732 None:intergenic 35.0%
CCAAACCTCTTGAAACAAAA+TGG - chr3_4:7022710-7022729 Msa0487910:intron 35.0%
!! GTTATTCTCCTTCTAAGATC+TGG - chr3_4:7022817-7022836 Msa0487910:intron 35.0%
! CGATTGATGACAATTCCAAA+AGG + chr3_4:7022865-7022884 None:intergenic 35.0%
! TCTGATTGTTCTCTGCATTT+TGG - chr3_4:7022946-7022965 Msa0487910:CDS 35.0%
! AGTTTCTTTGTTGGTTATGC+TGG - chr3_4:7023129-7023148 Msa0487910:intron 35.0%
!! TAGCTCAAGTTTGCTGTATA+AGG - chr3_4:7023212-7023231 Msa0487910:CDS 35.0%
! AGATTCTTCTGAAGGTTTGT+GGG - chr3_4:7023242-7023261 Msa0487910:CDS 35.0%
! GAGGAGATTTTGCAACTTAT+GGG - chr3_4:7023264-7023283 Msa0487910:CDS 35.0%
!! CTTTTGTTGTGTTTGTGCAT+TGG + chr3_4:7023560-7023579 None:intergenic 35.0%
! GATTTTTCCACGTTGTTCAT+AGG + chr3_4:7023615-7023634 None:intergenic 35.0%
TGGATTGCAGAGATAGATGA+AGG + chr3_4:7021040-7021059 None:intergenic 40.0%
TGACAACAAGAAATGGGATG+CGG + chr3_4:7021322-7021341 None:intergenic 40.0%
!!! TTTTGCCTTCTGGAATAGAC+TGG + chr3_4:7021619-7021638 None:intergenic 40.0%
GTGGTCATGTTAATCTGGAT+TGG - chr3_4:7021687-7021706 Msa0487910:CDS 40.0%
TGTACCTCTGTCTGTTTAAG+TGG - chr3_4:7021798-7021817 Msa0487910:CDS 40.0%
TTCGAGTCAACTTCCTGAAT+TGG - chr3_4:7021821-7021840 Msa0487910:CDS 40.0%
! AGAGTCTTGTCATAACCCAT+AGG - chr3_4:7021875-7021894 Msa0487910:CDS 40.0%
AACATGTCCAAACCACCTAT+GGG + chr3_4:7021893-7021912 None:intergenic 40.0%
AAACATGTCCAAACCACCTA+TGG + chr3_4:7021894-7021913 None:intergenic 40.0%
! ATAGGTGGTTTGGACATGTT+TGG - chr3_4:7021893-7021912 Msa0487910:CDS 40.0%
TTAACCTTTATCCCACTAGG+TGG + chr3_4:7022049-7022068 None:intergenic 40.0%
!! TGAGCCCATTTTGTTTCAAG+AGG + chr3_4:7022718-7022737 None:intergenic 40.0%
! GTCTAGTTCCAGATCTTAGA+AGG + chr3_4:7022828-7022847 None:intergenic 40.0%
ATGCAGAGAACAATCAGAGA+AGG + chr3_4:7022944-7022963 None:intergenic 40.0%
! GATTGTTCTCTGCATTTTGG+TGG - chr3_4:7022949-7022968 Msa0487910:CDS 40.0%
AAAAACATGCTTGCCTCAAG+AGG + chr3_4:7022976-7022995 None:intergenic 40.0%
GTAGTCCCTGGTCTATATTA+TGG - chr3_4:7023039-7023058 Msa0487910:intron 40.0%
GAGCTCCATAATATAGACCA+GGG + chr3_4:7023047-7023066 None:intergenic 40.0%
AACTGTTTAGATGATGCAGC+AGG - chr3_4:7023069-7023088 Msa0487910:intron 40.0%
ACTGTTTAGATGATGCAGCA+GGG - chr3_4:7023070-7023089 Msa0487910:intron 40.0%
! TCTTTGTTGGTTATGCTGGA+TGG - chr3_4:7023133-7023152 Msa0487910:intron 40.0%
!! TGAGTCAGAGTATTGGTATG+TGG - chr3_4:7023182-7023201 Msa0487910:intron 40.0%
GCTTTGACAGATTCTTCTGA+AGG - chr3_4:7023234-7023253 Msa0487910:CDS 40.0%
! CAGATTCTTCTGAAGGTTTG+TGG - chr3_4:7023241-7023260 Msa0487910:CDS 40.0%
! GGAGGAGATTTTGCAACTTA+TGG - chr3_4:7023263-7023282 Msa0487910:CDS 40.0%
TTCTCAACCTATGAACAACG+TGG - chr3_4:7023605-7023624 Msa0487910:five_prime_UTR 40.0%
AACAACGTGGAAAAATCCCT+AGG - chr3_4:7023618-7023637 Msa0487910:five_prime_UTR 40.0%
ACAACGTGGAAAAATCCCTA+GGG - chr3_4:7023619-7023638 Msa0487910:five_prime_UTR 40.0%
TGCTTCATATCTTGTCCCTA+GGG + chr3_4:7023637-7023656 None:intergenic 40.0%
TTGCTTCATATCTTGTCCCT+AGG + chr3_4:7023638-7023657 None:intergenic 40.0%
AAGAACAATAATCACGGCGG+AGG - chr3_4:7021371-7021390 Msa0487910:CDS 45.0%
ACTGGTCACCATTACCTGTA+AGG + chr3_4:7021601-7021620 None:intergenic 45.0%
AACTCTCAGAATGAGAACCG+TGG - chr3_4:7021665-7021684 Msa0487910:CDS 45.0%
CCAGATTAACATGACCACCA+CGG + chr3_4:7021685-7021704 None:intergenic 45.0%
CGAACCACTTAAACAGACAG+AGG + chr3_4:7021805-7021824 None:intergenic 45.0%
GTCTTGTCATAACCCATAGG+TGG - chr3_4:7021878-7021897 Msa0487910:CDS 45.0%
GTCATAACCCATAGGTGGTT+TGG - chr3_4:7021883-7021902 Msa0487910:CDS 45.0%
ATTCAGAAGACTCCACCTAG+TGG - chr3_4:7022034-7022053 Msa0487910:intron 45.0%
TTCAGAAGACTCCACCTAGT+GGG - chr3_4:7022035-7022054 Msa0487910:intron 45.0%
TGACTGTATCTGTCCCATTG+AGG - chr3_4:7022218-7022237 Msa0487910:intron 45.0%
GGAGCAACTTACTCGATGTT+AGG - chr3_4:7022599-7022618 Msa0487910:intron 45.0%
GATGCCGATACACACAAAGA+AGG - chr3_4:7022670-7022689 Msa0487910:intron 45.0%
GCGAATACCATCAAGCTTGT+CGG + chr3_4:7022782-7022801 None:intergenic 45.0%
GAACTAGACACCCACAAGAA+GGG - chr3_4:7022839-7022858 Msa0487910:intron 45.0%
TTCCAAAAGGCCCTTCTTGT+GGG + chr3_4:7022852-7022871 None:intergenic 45.0%
ATTCCAAAAGGCCCTTCTTG+TGG + chr3_4:7022853-7022872 None:intergenic 45.0%
CAGAGAACAATCAGAGAAGG+TGG + chr3_4:7022941-7022960 None:intergenic 45.0%
GAAGCTTCCAGGATTTGAAG+AGG - chr3_4:7023017-7023036 Msa0487910:intron 45.0%
CGAGCTCCATAATATAGACC+AGG + chr3_4:7023048-7023067 None:intergenic 45.0%
TGGTTATGCTGGATGGCAAA+TGG - chr3_4:7023140-7023159 Msa0487910:intron 45.0%
! TTCTTCTGAAGGTTTGTGGG+AGG - chr3_4:7023245-7023264 Msa0487910:CDS 45.0%
TTTGCAACTTATGGGTACGC+AGG - chr3_4:7023272-7023291 Msa0487910:CDS 45.0%
TTAGTACCTATGGGTCTTGC+TGG + chr3_4:7023322-7023341 None:intergenic 45.0%
CAACAAGAAATGGGATGCGG+CGG + chr3_4:7021319-7021338 None:intergenic 50.0%
! CTTGTTGTCACTGCTAACGC+CGG - chr3_4:7021332-7021351 Msa0487910:CDS 50.0%
CTTCTTGTTCTTCTTGCCGC+CGG + chr3_4:7021354-7021373 None:intergenic 50.0%
AACAATAATCACGGCGGAGG+TGG - chr3_4:7021374-7021393 Msa0487910:CDS 50.0%
GGTGACCAGTCTATTCCAGA+AGG - chr3_4:7021611-7021630 Msa0487910:CDS 50.0%
TCTCAGAATGAGAACCGTGG+TGG - chr3_4:7021668-7021687 Msa0487910:CDS 50.0%
CCGTGGTGGTCATGTTAATC+TGG - chr3_4:7021682-7021701 Msa0487910:CDS 50.0%
GACTCCACCTAGTGGGATAA+AGG - chr3_4:7022042-7022061 Msa0487910:intron 50.0%
CTAAGATGCCTCCTTGGTTG+AGG - chr3_4:7022186-7022205 Msa0487910:intron 50.0%
CATGTTGTCAGCCTCAACCA+AGG + chr3_4:7022200-7022219 None:intergenic 50.0%
GCCGATACACACAAAGAAGG+CGG - chr3_4:7022673-7022692 Msa0487910:intron 50.0%
CCCGCCTTCTTTGTGTGTAT+CGG + chr3_4:7022677-7022696 None:intergenic 50.0%
CCGATACACACAAAGAAGGC+GGG - chr3_4:7022674-7022693 Msa0487910:intron 50.0%
CGATACACACAAAGAAGGCG+GGG - chr3_4:7022675-7022694 Msa0487910:intron 50.0%
CCAGTCTCAGGTACAGGAAT+AGG + chr3_4:7022742-7022761 None:intergenic 50.0%
CCTATTCCTGTACCTGAGAC+TGG - chr3_4:7022739-7022758 Msa0487910:intron 50.0%
ACAAGTACACAGCCAGTCTC+AGG + chr3_4:7022754-7022773 None:intergenic 50.0%
! TGAGACTGGCTGTGTACTTG+TGG - chr3_4:7022753-7022772 Msa0487910:intron 50.0%
GGAACTAGACACCCACAAGA+AGG - chr3_4:7022838-7022857 Msa0487910:intron 50.0%
!! GCATTTTGGTGGACCTCTTG+AGG - chr3_4:7022960-7022979 Msa0487910:CDS 50.0%
GGAGAGAAGTTGAAGCTTCC+AGG - chr3_4:7023006-7023025 Msa0487910:intron 50.0%
GGGACTACCTCTTCAAATCC+TGG + chr3_4:7023027-7023046 None:intergenic 50.0%
GGATTTGAAGAGGTAGTCCC+TGG - chr3_4:7023027-7023046 Msa0487910:intron 50.0%
GCAATACCAGCAAGACCCAT+AGG - chr3_4:7023313-7023332 Msa0487910:CDS 50.0%
AATAATCACGGCGGAGGTGG+AGG - chr3_4:7021377-7021396 Msa0487910:CDS 55.0%
GTTGTCAGCCTCAACCAAGG+AGG + chr3_4:7022197-7022216 None:intergenic 55.0%
ACACAGCCAGTCTCAGGTAC+AGG + chr3_4:7022748-7022767 None:intergenic 55.0%
GTGGCTACCGACAAGCTTGA+TGG - chr3_4:7022772-7022791 Msa0487910:intron 55.0%
! CACCCACAAGAAGGGCCTTT+TGG - chr3_4:7022847-7022866 Msa0487910:intron 55.0%
TGCAGCAGGGCTTGTGAAGA+AGG - chr3_4:7023083-7023102 Msa0487910:intron 55.0%
GCAGCAGGGCTTGTGAAGAA+GGG - chr3_4:7023084-7023103 Msa0487910:intron 55.0%
CAGCAGGGCTTGTGAAGAAG+GGG - chr3_4:7023085-7023104 Msa0487910:intron 55.0%
ATGGGTACGCAGGATTGAGC+CGG - chr3_4:7023282-7023301 Msa0487910:CDS 55.0%
GCTGGTATTGCTGTGGCTTC+CGG + chr3_4:7023304-7023323 None:intergenic 55.0%
GGGTCTTGCTGGTATTGCTG+TGG + chr3_4:7023311-7023330 None:intergenic 55.0%
GTTGTCACTGCTAACGCCGG+CGG - chr3_4:7021335-7021354 Msa0487910:CDS 60.0%
AATCACGGCGGAGGTGGAGG+AGG - chr3_4:7021380-7021399 Msa0487910:CDS 65.0%
CACGGCGGAGGTGGAGGAGG+AGG - chr3_4:7021383-7021402 Msa0487910:CDS 75.0%
GGCGGAGGTGGAGGAGGAGG+AGG - chr3_4:7021386-7021405 Msa0487910:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 7020943 7023662 7020943 ID=Msa0487910;Name=Msa0487910
chr3_4 mRNA 7020943 7023662 7020943 ID=Msa0487910-mRNA-1;Parent=Msa0487910;Name=Msa0487910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|0.66|0.5|4|363|332
chr3_4 exon 7020943 7021947 7020943 ID=Msa0487910-mRNA-1:exon:2473;Parent=Msa0487910-mRNA-1
chr3_4 exon 7022860 7022999 7022860 ID=Msa0487910-mRNA-1:exon:2472;Parent=Msa0487910-mRNA-1
chr3_4 exon 7023198 7023440 7023198 ID=Msa0487910-mRNA-1:exon:2471;Parent=Msa0487910-mRNA-1
chr3_4 exon 7023592 7023662 7023592 ID=Msa0487910-mRNA-1:exon:2470;Parent=Msa0487910-mRNA-1
chr3_4 five_prime_UTR 7023592 7023662 7023592 ID=Msa0487910-mRNA-1:five_prime_utr;Parent=Msa0487910-mRNA-1
chr3_4 five_prime_UTR 7023415 7023440 7023415 ID=Msa0487910-mRNA-1:five_prime_utr;Parent=Msa0487910-mRNA-1
chr3_4 CDS 7023198 7023414 7023198 ID=Msa0487910-mRNA-1:cds;Parent=Msa0487910-mRNA-1
chr3_4 CDS 7022860 7022999 7022860 ID=Msa0487910-mRNA-1:cds;Parent=Msa0487910-mRNA-1
chr3_4 CDS 7021306 7021947 7021306 ID=Msa0487910-mRNA-1:cds;Parent=Msa0487910-mRNA-1
chr3_4 three_prime_UTR 7020943 7021305 7020943 ID=Msa0487910-mRNA-1:three_prime_utr;Parent=Msa0487910-mRNA-1
Gene Sequence

>Msa0487910

ATGGATCTGTGTGGCGTTAATGTGAAGAACAATCTTTTGTACCCAACCAATTCATTTTATTCTGGAACAACAAGATCATCATCTTTTTACAACGCCGCCGAGATCATTAACTGTAAACAACAACGCCGCCGCATCCCATTTCTTGTTGTCACTGCTAACGCCGGCGGCAAGAAGAACAAGAAGAACAATAATCACGGCGGAGGTGGAGGAGGAGGAGGTAATGGTGACCAGTCTATTCCAGAAGGCAAAAATAATAATGGTGATAAATCAAATAACAACTCTCAGAATGAGAACCGTGGTGGTCATGTTAATCTGGATTGGCGTGAATTCAGAGCTAAACTATATAGAGATGAGCTGAAAGAAATAGCAGATGCCGATACACACAAAGAAGGCGGGGCATTACACATTTCCAAACCTCTTGAAACAAAATGGGCTCATCCTATTCCTGTACCTGAGACTGGCTGTGTACTTGTGGCTACCGACAAGCTTGATGGTATTCGCACCTTTGAAAGAACTGTTATTCTCCTTCTAAGATCTGGAACTAGACACCCACAAGAAGGGCCTTTTGGAATTGTCATCAATCGTCCTCTTCACAAGAAGATTAAACAGATGAATCCTAAAAATCATGATTTAGTAACCACCTTCTCTGATTGTTCTCTGCATTTTGGTGGACCTCTTGAGGCAAGCATGTTTTTGCTAAAATCAGGAGAGAAGTTGAAGCTTCCAGGATTTGAAGAGGTAGTCCCTGGTCTATATTATGGAGCTCGAAACTGTTTAGATGATGCAGCAGGGCTTGTGAAGAAGGGGATTATCAAGCCTCATGATTTCAGTTTCTTTGTTGGTTATGCTGGATGGCAAATGGATCAGTTGCGAGATGAAATTGAGTCAGAGTATTGGTATGTGGCTGCATGTAGCTCAAGTTTGCTGTATAAGGCTTTGACAGATTCTTCTGAAGGTTTGTGGGAGGAGATTTTGCAACTTATGGGTACGCAGGATTGA

Protein sequence

>Msa0487910

MDLCGVNVKNNLLYPTNSFYSGTTRSSSFYNAAEIINCKQQRRRIPFLVVTANAGGKKNKKNNNHGGGGGGGGNGDQSIPEGKNNNGDKSNNNSQNENRGGHVNLDWREFRAKLYRDELKEIADADTHKEGGALHISKPLETKWAHPIPVPETGCVLVATDKLDGIRTFERTVILLLRSGTRHPQEGPFGIVINRPLHKKIKQMNPKNHDLVTTFSDCSLHFGGPLEASMFLLKSGEKLKLPGFEEVVPGLYYGARNCLDDAAGLVKKGIIKPHDFSFFVGYAGWQMDQLRDEIESEYWYVAACSSSLLYKALTDSSEGLWEEILQLMGTQD*